CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1528 | I1528I | I2346I | syn | atC | atT | 5583 | 5443 | 0.974924 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528I | I2346I | syn | atC | atA | 5583 | 140 | 0.0250761 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528V | I2346V | nonsyn | Atc | Gtc | 809 | 808 | 0.998764 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528V | I2346V | nonsyn | AtC | GtT | 809 | 1 | 0.00123609 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528T | I2346T | nonsyn | aTc | aCc | 363 | 360 | 0.991736 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528T | I2346T | nonsyn | aTC | aCA | 363 | 3 | 0.00826446 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528del | I2346del | del | ATC | --- | 148 | 148 | 1 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528S | I2346S | nonsyn | aTc | aGc | 26 | 24 | 0.923077 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528S | I2346S | nonsyn | aTC | aGT | 26 | 1 | 0.0384615 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528S | I2346S | nonsyn | ATC | TCA | 26 | 1 | 0.0384615 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528L | I2346L | nonsyn | Atc | Ctc | 24 | 19 | 0.791667 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528L | I2346L | nonsyn | AtC | CtT | 24 | 2 | 0.0833333 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528L | I2346L | nonsyn | AtC | TtG | 24 | 2 | 0.0833333 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528L | I2346L | nonsyn | AtC | CtG | 24 | 1 | 0.0416667 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528del1 | I2346del1 | del | aTc | a-c | 14 | 5 | 0.357143 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528del1 | I2346del1 | del | atC | at- | 14 | 2 | 0.142857 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528del1 | I2346del1 | del | aTC | aC- | 14 | 2 | 0.142857 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528del1 | I2346del1 | del | ATc | -Ac | 14 | 2 | 0.142857 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528del1 | I2346del1 | del | Atc | -tc | 14 | 2 | 0.142857 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528del1 | I2346del1 | del | aTC | a-A | 14 | 1 | 0.0714286 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528N | I2346N | nonsyn | aTc | aAc | 13 | 9 | 0.692308 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528N | I2346N | nonsyn | aTC | aAT | 13 | 4 | 0.307692 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528F | I2346F | nonsyn | Atc | Ttc | 9 | 8 | 0.888889 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528del2 | I2346del2 | del | aTC | a-- | 9 | 6 | 0.666667 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528del2 | I2346del2 | del | ATc | --c | 9 | 3 | 0.333333 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528F | I2346F | nonsyn | AtC | TtT | 9 | 1 | 0.111111 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528R | I2346R | nonsyn | aTC | aGG | 8 | 3 | 0.375 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528R | I2346R | nonsyn | ATC | CGG | 8 | 2 | 0.25 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528R | I2346R | nonsyn | ATC | CGT | 8 | 1 | 0.125 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528R | I2346R | nonsyn | aTC | aGA | 8 | 1 | 0.125 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528R | I2346R | nonsyn | ATc | CGc | 8 | 1 | 0.125 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528M | I2346M | nonsyn | atC | atG | 7 | 7 | 1 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528K | I2346K | nonsyn | aTC | aAG | 6 | 4 | 0.666667 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528K | I2346K | nonsyn | aTC | aAA | 6 | 2 | 0.333333 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528Y | I2346Y | nonsyn | ATc | TAc | 4 | 3 | 0.75 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528Y | I2346Y | nonsyn | ATC | TAT | 4 | 1 | 0.25 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528A | I2346A | nonsyn | ATc | GCc | 2 | 2 | 1 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528X | I2346X | nonsyn | ATC | TAG | 2 | 2 | 1 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528H | I2346H | nonsyn | ATC | CAT | 1 | 1 | 1 | 7301-7303 |
ORF1ab/nsp3 | 1528 | I1528Q | I2346Q | nonsyn | ATC | CAG | 1 | 1 | 1 | 7301-7303 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 5443 | 5583 | All | 0.001041 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 140 | 5583 | All | 0.000027 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1610 | 1610 | B.1.2 | 0.014177 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1091 | 1091 | B.1.367 | 0.864501 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 808 | 809 | All | 0.000155 |
ORF1ab/nsp3 | 1528 | I1528V | AtC | GtT | 1 | 809 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 674 | 674 | AY.103 | 0.004185 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 429 | 432 | B.1.1.7 | 0.000384 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 3 | 432 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 360 | 363 | All | 0.000069 |
ORF1ab/nsp3 | 1528 | I1528T | aTC | aCA | 3 | 363 | All | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 209 | 210 | AY.4 | 0.000325 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 210 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 206 | 207 | B.1.617.2 | 0.000776 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 207 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 106 | 157 | B.1.160 | 0.003306 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 51 | 157 | B.1.160 | 0.001591 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 151 | 151 | B.1.1.519 | 0.005996 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 148 | 148 | All | 0.000028 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 143 | 147 | B.1 | 0.00131 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 4 | 147 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 125 | 125 | AY.4 | 0.000195 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 125 | 125 | B.1.1.406 | 0.811688 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 123 | 124 | AY.103 | 0.000764 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 124 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 106 | 106 | B.1.351 | 0.003151 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 99 | 99 | B.1.1 | 0.001796 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 72 | 73 | AY.61 | 0.007544 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 73 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 55 | 55 | B.1.177 | 0.000724 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 44 | 44 | B.1.617.2 | 0.000166 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 40 | 40 | P.1 | 0.00063 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 39 | 39 | B.1.1.7 | 0.000035 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 38 | 38 | AY.43 | 0.000168 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 33 | 37 | AY.3 | 0.000328 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 4 | 37 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 36 | 36 | AY.120 | 0.001338 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 33 | 36 | AY.20 | 0.001283 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 3 | 36 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 35 | 36 | AY.25 | 0.000211 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 36 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 35 | 36 | AY.44 | 0.000213 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 36 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 33 | 33 | AY.4 | 0.000051 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 32 | 32 | B.1.1.7 | 0.000029 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 31 | 31 | B.1.429 | 0.000729 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 30 | 30 | AY.103 | 0.000186 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 24 | 26 | All | 0.000005 |
ORF1ab/nsp3 | 1528 | I1528S | ATC | TCA | 1 | 26 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528S | aTC | aGT | 1 | 26 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 26 | 26 | B.1.177.60 | 0.005679 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 19 | 24 | All | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528L | AtC | TtG | 2 | 24 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528L | AtC | CtT | 2 | 24 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528L | AtC | CtG | 1 | 24 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 22 | 22 | AY.43 | 0.000097 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 21 | 21 | AY.75.1 | 0.003787 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 19 | 19 | AY.29.1 | 0.00419 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 18 | 19 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 1528 | I1528T | aTC | aCA | 1 | 19 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 18 | 18 | AY.5.4 | 0.004981 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 17 | 17 | B.1.1.309 | 0.099415 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 16 | 16 | AY.9.2 | 0.000588 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 16 | 16 | B.1.258 | 0.001065 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 16 | 16 | B.1.311 | 0.004393 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 16 | 16 | B.1.596 | 0.001394 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 16 | 16 | R.1 | 0.00144 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 15 | 15 | AY.46.6 | 0.001083 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTc | a-c | 5 | 14 | All | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528del1 | atC | at- | 2 | 14 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528del1 | Atc | -tc | 2 | 14 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528del1 | ATc | -Ac | 2 | 14 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTC | aC- | 2 | 14 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTC | a-A | 1 | 14 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 14 | 14 | AY.4.5 | 0.001505 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 14 | 14 | B.1.177.4 | 0.002955 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 14 | 14 | B.1.497 | 0.004407 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 13 | 14 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 1528 | I1528V | AtC | GtT | 1 | 14 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 14 | 14 | B.1.621 | 0.001239 |
ORF1ab/nsp3 | 1528 | I1528N | aTc | aAc | 9 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 1528 | I1528N | aTC | aAT | 4 | 13 | All | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 13 | 13 | AY.98.1 | 0.00063 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 12 | 12 | AY.38 | 0.005991 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 7 | 12 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 5 | 12 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 1528 | I1528F | Atc | Ttc | 8 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 1528 | I1528del2 | aTC | a-- | 6 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528del2 | ATc | --c | 3 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528F | AtC | TtT | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 7 | 9 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 2 | 9 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 9 | 9 | AY.9.2.1 | 0.017787 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 9 | 9 | B | 0.00115 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 1528 | I1528R | aTC | aGG | 3 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528R | ATC | CGG | 2 | 8 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528R | ATc | CGc | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528R | ATC | CGT | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528R | aTC | aGA | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 7 | 8 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 8 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp3 | 1528 | I1528M | atC | atG | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 7 | 7 | AY.114 | 0.001618 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 7 | 7 | B.1.240 | 0.001509 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 7 | 7 | B.1.561 | 0.002779 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp3 | 1528 | I1528K | aTC | aAG | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528K | aTC | aAA | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | AY.95 | 0.004566 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | B.1.1.241 | 0.012422 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | B.1.1.351 | 0.01676 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 5 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528S | ATC | TCA | 1 | 6 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 6 | 6 | B.1.630 | 0.031414 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 5 | 5 | B.1.564 | 0.002129 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 5 | 5 | B.1.625 | 0.011765 |
ORF1ab/nsp3 | 1528 | I1528Y | ATc | TAc | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1528 | I1528Y | ATC | TAT | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 4 | 4 | B.1.1.157 | 0.003653 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 4 | 4 | B.1.160.23 | 0.019324 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp3 | 1528 | I1528K | aTC | aAG | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1528 | I1528K | aTC | aAA | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | A.21 | 0.00831 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | AY.83 | 0.005172 |
ORF1ab/nsp3 | 1528 | I1528R | aTC | aGG | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528R | ATc | CGc | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528R | ATC | CGG | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528N | aTc | aAc | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1528 | I1528N | aTC | aAT | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528R | aTC | aGG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528R | ATC | CGG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528R | ATC | CGT | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | B.1.1.333 | 0.003229 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528L | AtC | CtT | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528L | AtC | TtG | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | B.6.6 | 0.002667 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | C.14 | 0.012987 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 3 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 3 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1528 | I1528del1 | ATc | -Ac | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1528 | I1528del2 | ATc | --c | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1528 | I1528N | aTc | aAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1528 | I1528N | aTC | aAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1528 | I1528Y | ATc | TAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1528 | I1528F | Atc | Ttc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1528 | I1528F | AtC | TtT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1528 | I1528Y | ATC | TAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AE.3 | 0.064516 |
ORF1ab/nsp3 | 1528 | I1528A | ATc | GCc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528X | ATC | TAG | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1528 | I1528F | Atc | Ttc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1528 | I1528L | AtC | TtG | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1528 | I1528L | AtC | CtG | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528S | aTC | aGT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1528 | I1528del2 | aTC | a-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | B.1.411 | 0.007407 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTc | a-c | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1528 | I1528del1 | atC | at- | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1528 | I1528Y | ATc | TAc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1528 | I1528N | aTc | aAc | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528N | aTC | aAT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1528 | I1528N | aTc | aAc | 1 | 2 | B.60 | 0.015873 |
ORF1ab/nsp3 | 1528 | I1528N | aTC | aAT | 1 | 2 | B.60 | 0.015873 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1528 | I1528H | ATC | CAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528Q | ATC | CAG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528R | aTC | aGG | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1528 | I1528T | aTC | aCA | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1528 | I1528K | aTC | aAG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1528 | I1528del2 | aTC | a-- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1528 | I1528M | atC | atG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1528 | I1528N | aTc | aAc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTC | aC- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1528 | I1528T | aTC | aCA | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1528 | I1528del2 | aTC | a-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528del2 | aTC | a-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTC | a-A | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1528 | I1528del2 | ATc | --c | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1528 | I1528F | Atc | Ttc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1528 | I1528F | Atc | Ttc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528M | atC | atG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1528 | I1528K | aTC | aAG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528H | ATC | CAT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528Q | ATC | CAG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528F | Atc | Ttc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528M | atC | atG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTc | a-c | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1528 | I1528A | ATc | GCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTc | a-c | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.270 | 0.010309 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1528 | I1528M | atC | atG | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTC | aC- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.507 | 0.008696 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp3 | 1528 | I1528A | ATc | GCc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1528 | I1528M | atC | atG | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTc | a-c | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1528 | I1528N | aTc | aAc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1528 | I1528X | ATC | TAG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1528 | I1528del1 | aTc | a-c | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1528 | I1528R | aTC | aGA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1528 | I1528M | atC | atG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1528 | I1528V | Atc | Gtc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1528 | I1528del1 | Atc | -tc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.604 | 0.017241 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1528 | I1528L | Atc | Ctc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1528 | I1528F | Atc | Ttc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528X | ATC | TAG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528M | atC | atG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528del1 | Atc | -tc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1528 | I1528del1 | atC | at- | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atA | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1528 | I1528N | aTc | aAc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1528 | I1528del2 | aTC | a-- | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1528 | I1528S | aTc | aGc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp3 | 1528 | I1528F | Atc | Ttc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1528 | I1528N | aTc | aAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | K.1 | 0.02381 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1528 | I1528L | AtC | CtT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1528 | I1528I | atC | atT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1528 | I1528del | ATC | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1528 | I1528T | aTc | aCc | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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