CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1528

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31528I1528II2346IsynatCatT558354430.9749247301-7303
ORF1ab/nsp31528I1528II2346IsynatCatA55831400.02507617301-7303
ORF1ab/nsp31528I1528VI2346VnonsynAtcGtc8098080.9987647301-7303
ORF1ab/nsp31528I1528VI2346VnonsynAtCGtT80910.001236097301-7303
ORF1ab/nsp31528I1528TI2346TnonsynaTcaCc3633600.9917367301-7303
ORF1ab/nsp31528I1528TI2346TnonsynaTCaCA36330.008264467301-7303
ORF1ab/nsp31528I1528delI2346deldelATC---14814817301-7303
ORF1ab/nsp31528I1528SI2346SnonsynaTcaGc26240.9230777301-7303
ORF1ab/nsp31528I1528SI2346SnonsynaTCaGT2610.03846157301-7303
ORF1ab/nsp31528I1528SI2346SnonsynATCTCA2610.03846157301-7303
ORF1ab/nsp31528I1528LI2346LnonsynAtcCtc24190.7916677301-7303
ORF1ab/nsp31528I1528LI2346LnonsynAtCCtT2420.08333337301-7303
ORF1ab/nsp31528I1528LI2346LnonsynAtCTtG2420.08333337301-7303
ORF1ab/nsp31528I1528LI2346LnonsynAtCCtG2410.04166677301-7303
ORF1ab/nsp31528I1528del1I2346del1delaTca-c1450.3571437301-7303
ORF1ab/nsp31528I1528del1I2346del1delatCat-1420.1428577301-7303
ORF1ab/nsp31528I1528del1I2346del1delaTCaC-1420.1428577301-7303
ORF1ab/nsp31528I1528del1I2346del1delATc-Ac1420.1428577301-7303
ORF1ab/nsp31528I1528del1I2346del1delAtc-tc1420.1428577301-7303
ORF1ab/nsp31528I1528del1I2346del1delaTCa-A1410.07142867301-7303
ORF1ab/nsp31528I1528NI2346NnonsynaTcaAc1390.6923087301-7303
ORF1ab/nsp31528I1528NI2346NnonsynaTCaAT1340.3076927301-7303
ORF1ab/nsp31528I1528FI2346FnonsynAtcTtc980.8888897301-7303
ORF1ab/nsp31528I1528del2I2346del2delaTCa--960.6666677301-7303
ORF1ab/nsp31528I1528del2I2346del2delATc--c930.3333337301-7303
ORF1ab/nsp31528I1528FI2346FnonsynAtCTtT910.1111117301-7303
ORF1ab/nsp31528I1528RI2346RnonsynaTCaGG830.3757301-7303
ORF1ab/nsp31528I1528RI2346RnonsynATCCGG820.257301-7303
ORF1ab/nsp31528I1528RI2346RnonsynATCCGT810.1257301-7303
ORF1ab/nsp31528I1528RI2346RnonsynaTCaGA810.1257301-7303
ORF1ab/nsp31528I1528RI2346RnonsynATcCGc810.1257301-7303
ORF1ab/nsp31528I1528MI2346MnonsynatCatG7717301-7303
ORF1ab/nsp31528I1528KI2346KnonsynaTCaAG640.6666677301-7303
ORF1ab/nsp31528I1528KI2346KnonsynaTCaAA620.3333337301-7303
ORF1ab/nsp31528I1528YI2346YnonsynATcTAc430.757301-7303
ORF1ab/nsp31528I1528YI2346YnonsynATCTAT410.257301-7303
ORF1ab/nsp31528I1528AI2346AnonsynATcGCc2217301-7303
ORF1ab/nsp31528I1528XI2346XnonsynATCTAG2217301-7303
ORF1ab/nsp31528I1528HI2346HnonsynATCCAT1117301-7303
ORF1ab/nsp31528I1528QI2346QnonsynATCCAG1117301-7303

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31528I1528IatCatT54435583All0.001041
ORF1ab/nsp31528I1528IatCatA1405583All0.000027
ORF1ab/nsp31528I1528IatCatT16101610B.1.20.014177
ORF1ab/nsp31528I1528IatCatT10911091B.1.3670.864501
ORF1ab/nsp31528I1528VAtcGtc808809All0.000155
ORF1ab/nsp31528I1528VAtCGtT1809All0
ORF1ab/nsp31528I1528VAtcGtc674674AY.1030.004185
ORF1ab/nsp31528I1528IatCatT429432B.1.1.70.000384
ORF1ab/nsp31528I1528IatCatA3432B.1.1.70.000003
ORF1ab/nsp31528I1528TaTcaCc360363All0.000069
ORF1ab/nsp31528I1528TaTCaCA3363All0.000001
ORF1ab/nsp31528I1528IatCatT209210AY.40.000325
ORF1ab/nsp31528I1528IatCatA1210AY.40.000002
ORF1ab/nsp31528I1528IatCatT206207B.1.617.20.000776
ORF1ab/nsp31528I1528IatCatA1207B.1.617.20.000004
ORF1ab/nsp31528I1528IatCatA106157B.1.1600.003306
ORF1ab/nsp31528I1528IatCatT51157B.1.1600.001591
ORF1ab/nsp31528I1528IatCatT151151B.1.1.5190.005996
ORF1ab/nsp31528I1528delATC---148148All0.000028
ORF1ab/nsp31528I1528IatCatT143147B.10.00131
ORF1ab/nsp31528I1528IatCatA4147B.10.000037
ORF1ab/nsp31528I1528TaTcaCc125125AY.40.000195
ORF1ab/nsp31528I1528IatCatT125125B.1.1.4060.811688
ORF1ab/nsp31528I1528IatCatT123124AY.1030.000764
ORF1ab/nsp31528I1528IatCatA1124AY.1030.000006
ORF1ab/nsp31528I1528IatCatT106106B.1.3510.003151
ORF1ab/nsp31528I1528IatCatT9999B.1.10.001796
ORF1ab/nsp31528I1528IatCatT7273AY.610.007544
ORF1ab/nsp31528I1528IatCatA173AY.610.000105
ORF1ab/nsp31528I1528IatCatT5555B.1.1770.000724
ORF1ab/nsp31528I1528TaTcaCc4444B.1.617.20.000166
ORF1ab/nsp31528I1528IatCatT4040P.10.00063
ORF1ab/nsp31528I1528VAtcGtc3939B.1.1.70.000035
ORF1ab/nsp31528I1528IatCatT3838AY.430.000168
ORF1ab/nsp31528I1528IatCatT3337AY.30.000328
ORF1ab/nsp31528I1528IatCatA437AY.30.00004
ORF1ab/nsp31528I1528IatCatT3636AY.1200.001338
ORF1ab/nsp31528I1528IatCatT3336AY.200.001283
ORF1ab/nsp31528I1528IatCatA336AY.200.000117
ORF1ab/nsp31528I1528IatCatT3536AY.250.000211
ORF1ab/nsp31528I1528IatCatA136AY.250.000006
ORF1ab/nsp31528I1528IatCatT3536AY.440.000213
ORF1ab/nsp31528I1528IatCatA136AY.440.000006
ORF1ab/nsp31528I1528VAtcGtc3333AY.40.000051
ORF1ab/nsp31528I1528delATC---3232B.1.1.70.000029
ORF1ab/nsp31528I1528IatCatT3131B.1.4290.000729
ORF1ab/nsp31528I1528TaTcaCc3030AY.1030.000186
ORF1ab/nsp31528I1528SaTcaGc2426All0.000005
ORF1ab/nsp31528I1528SATCTCA126All0
ORF1ab/nsp31528I1528SaTCaGT126All0
ORF1ab/nsp31528I1528IatCatT2626B.1.177.600.005679
ORF1ab/nsp31528I1528LAtcCtc1924All0.000004
ORF1ab/nsp31528I1528LAtCTtG224All0
ORF1ab/nsp31528I1528LAtCCtT224All0
ORF1ab/nsp31528I1528LAtCCtG124All0
ORF1ab/nsp31528I1528TaTcaCc2222AY.430.000097
ORF1ab/nsp31528I1528IatCatT2121AY.75.10.003787
ORF1ab/nsp31528I1528IatCatT1919AY.29.10.00419
ORF1ab/nsp31528I1528TaTcaCc1819B.1.1.70.000016
ORF1ab/nsp31528I1528TaTCaCA119B.1.1.70.000001
ORF1ab/nsp31528I1528IatCatT1818AY.5.40.004981
ORF1ab/nsp31528I1528IatCatT1717AY.260.000481
ORF1ab/nsp31528I1528IatCatT1717B.1.1.3090.099415
ORF1ab/nsp31528I1528IatCatT1616AY.9.20.000588
ORF1ab/nsp31528I1528IatCatT1616B.1.2580.001065
ORF1ab/nsp31528I1528IatCatT1616B.1.3110.004393
ORF1ab/nsp31528I1528IatCatT1616B.1.5960.001394
ORF1ab/nsp31528I1528IatCatT1616R.10.00144
ORF1ab/nsp31528I1528IatCatT1515AY.46.60.001083
ORF1ab/nsp31528I1528del1aTca-c514All0.000001
ORF1ab/nsp31528I1528del1atCat-214All0
ORF1ab/nsp31528I1528del1Atc-tc214All0
ORF1ab/nsp31528I1528del1ATc-Ac214All0
ORF1ab/nsp31528I1528del1aTCaC-214All0
ORF1ab/nsp31528I1528del1aTCa-A114All0
ORF1ab/nsp31528I1528IatCatT1414AY.4.50.001505
ORF1ab/nsp31528I1528delATC---1414AY.430.000062
ORF1ab/nsp31528I1528IatCatT1414B.1.177.40.002955
ORF1ab/nsp31528I1528IatCatT1414B.1.4970.004407
ORF1ab/nsp31528I1528VAtcGtc1314B.1.617.20.000049
ORF1ab/nsp31528I1528VAtCGtT114B.1.617.20.000004
ORF1ab/nsp31528I1528IatCatT1414B.1.6210.001239
ORF1ab/nsp31528I1528NaTcaAc913All0.000002
ORF1ab/nsp31528I1528NaTCaAT413All0.000001
ORF1ab/nsp31528I1528IatCatT1313AY.98.10.00063
ORF1ab/nsp31528I1528IatCatT1212AY.380.005991
ORF1ab/nsp31528I1528IatCatA712AY.390.000173
ORF1ab/nsp31528I1528IatCatT512AY.390.000124
ORF1ab/nsp31528I1528IatCatT1212AY.50.000248
ORF1ab/nsp31528I1528IatCatT1111AY.4.20.000239
ORF1ab/nsp31528I1528TaTcaCc1111B.10.000101
ORF1ab/nsp31528I1528FAtcTtc89All0.000002
ORF1ab/nsp31528I1528del2aTCa--69All0.000001
ORF1ab/nsp31528I1528del2ATc--c39All0.000001
ORF1ab/nsp31528I1528FAtCTtT19All0
ORF1ab/nsp31528I1528IatCatT79AY.1020.000186
ORF1ab/nsp31528I1528IatCatA29AY.1020.000053
ORF1ab/nsp31528I1528TaTcaCc99AY.30.00009
ORF1ab/nsp31528I1528TaTcaCc99AY.9.2.10.017787
ORF1ab/nsp31528I1528IatCatT99B0.00115
ORF1ab/nsp31528I1528IatCatT99B.1.5260.000212
ORF1ab/nsp31528I1528delATC---99B.1.617.20.000034
ORF1ab/nsp31528I1528RaTCaGG38All0.000001
ORF1ab/nsp31528I1528RATCCGG28All0
ORF1ab/nsp31528I1528RATcCGc18All0
ORF1ab/nsp31528I1528RATCCGT18All0
ORF1ab/nsp31528I1528RaTCaGA18All0
ORF1ab/nsp31528I1528IatCatT78AY.1190.000247
ORF1ab/nsp31528I1528IatCatA18AY.1190.000035
ORF1ab/nsp31528I1528TaTcaCc88AY.260.000226
ORF1ab/nsp31528I1528SaTcaGc88AY.40.000012
ORF1ab/nsp31528I1528TaTcaCc88C.370.000929
ORF1ab/nsp31528I1528MatCatG77All0.000001
ORF1ab/nsp31528I1528IatCatT77AY.1000.000322
ORF1ab/nsp31528I1528IatCatT77AY.1140.001618
ORF1ab/nsp31528I1528delATC---77AY.250.000042
ORF1ab/nsp31528I1528IatCatT77AY.470.000218
ORF1ab/nsp31528I1528TaTcaCc77B.1.20.000062
ORF1ab/nsp31528I1528IatCatT77B.1.2400.001509
ORF1ab/nsp31528I1528IatCatT77B.1.360.001021
ORF1ab/nsp31528I1528IatCatT77B.1.5610.002779
ORF1ab/nsp31528I1528IatCatT77P.1.140.000335
ORF1ab/nsp31528I1528KaTCaAG46All0.000001
ORF1ab/nsp31528I1528KaTCaAA26All0
ORF1ab/nsp31528I1528IatCatT66AY.1130.000854
ORF1ab/nsp31528I1528VAtcGtc66AY.200.000233
ORF1ab/nsp31528I1528IatCatT66AY.270.000388
ORF1ab/nsp31528I1528IatCatT66AY.290.000095
ORF1ab/nsp31528I1528TaTcaCc66AY.390.000148
ORF1ab/nsp31528I1528IatCatT66AY.420.000241
ORF1ab/nsp31528I1528IatCatT66AY.540.000572
ORF1ab/nsp31528I1528IatCatT66AY.950.004566
ORF1ab/nsp31528I1528IatCatT66B.1.1.2410.012422
ORF1ab/nsp31528I1528IatCatT66B.1.1.3510.01676
ORF1ab/nsp31528I1528SaTcaGc56B.1.1.70.000004
ORF1ab/nsp31528I1528SATCTCA16B.1.1.70.000001
ORF1ab/nsp31528I1528IatCatT66B.1.2430.000418
ORF1ab/nsp31528I1528IatCatT66B.1.6300.031414
ORF1ab/nsp31528I1528IatCatT55AY.1090.003698
ORF1ab/nsp31528I1528IatCatT55AY.710.002375
ORF1ab/nsp31528I1528delATC---55B.10.000046
ORF1ab/nsp31528I1528delATC---55B.1.10.000091
ORF1ab/nsp31528I1528IatCatT55B.1.1.10.001633
ORF1ab/nsp31528I1528LAtcCtc55B.1.1.70.000004
ORF1ab/nsp31528I1528VAtcGtc55B.1.20.000044
ORF1ab/nsp31528I1528IatCatT55B.1.258.170.00052
ORF1ab/nsp31528I1528IatCatT55B.1.5640.002129
ORF1ab/nsp31528I1528IatCatT55B.1.6250.011765
ORF1ab/nsp31528I1528YATcTAc34All0.000001
ORF1ab/nsp31528I1528YATCTAT14All0
ORF1ab/nsp31528I1528VAtcGtc44AY.1020.000106
ORF1ab/nsp31528I1528LAtcCtc44AY.1030.000025
ORF1ab/nsp31528I1528VAtcGtc44AY.440.000024
ORF1ab/nsp31528I1528IatCatT44AY.7.10.000451
ORF1ab/nsp31528I1528TaTcaCc44B.1.1.1570.003653
ORF1ab/nsp31528I1528TaTcaCc44B.1.160.230.019324
ORF1ab/nsp31528I1528IatCatT44B.1.3690.001141
ORF1ab/nsp31528I1528TaTcaCc44B.1.4000.001716
ORF1ab/nsp31528I1528IatCatT44B.1.4690.01444
ORF1ab/nsp31528I1528KaTCaAG24B.1.617.20.000008
ORF1ab/nsp31528I1528KaTCaAA24B.1.617.20.000008
ORF1ab/nsp31528I1528IatCatT44D.20.0003
ORF1ab/nsp31528I1528IatCatT44P.1.70.001277
ORF1ab/nsp31528I1528IatCatT44Q.30.00058
ORF1ab/nsp31528I1528IatCatT33A.210.00831
ORF1ab/nsp31528I1528TaTcaCc33AY.1020.00008
ORF1ab/nsp31528I1528IatCatT33AY.1040.005952
ORF1ab/nsp31528I1528IatCatT33AY.1180.000188
ORF1ab/nsp31528I1528IatCatT33AY.130.000483
ORF1ab/nsp31528I1528IatCatT33AY.3.10.000256
ORF1ab/nsp31528I1528delATC---33AY.40.000005
ORF1ab/nsp31528I1528delATC---33AY.420.000121
ORF1ab/nsp31528I1528TaTcaCc33AY.440.000018
ORF1ab/nsp31528I1528IatCatT33AY.750.000168
ORF1ab/nsp31528I1528IatCatT33AY.830.005172
ORF1ab/nsp31528I1528RaTCaGG13AY.9.20.000037
ORF1ab/nsp31528I1528RATcCGc13AY.9.20.000037
ORF1ab/nsp31528I1528RATCCGG13AY.9.20.000037
ORF1ab/nsp31528I1528NaTcaAc23B.10.000018
ORF1ab/nsp31528I1528NaTCaAT13B.10.000009
ORF1ab/nsp31528I1528RaTCaGG13B.10.000009
ORF1ab/nsp31528I1528RATCCGG13B.10.000009
ORF1ab/nsp31528I1528RATCCGT13B.10.000009
ORF1ab/nsp31528I1528VAtcGtc33B.1.10.000054
ORF1ab/nsp31528I1528IatCatT33B.1.1.1920.006928
ORF1ab/nsp31528I1528IatCatT33B.1.1.2140.000166
ORF1ab/nsp31528I1528IatCatT33B.1.1.2160.002671
ORF1ab/nsp31528I1528IatCatT33B.1.1.3170.001235
ORF1ab/nsp31528I1528IatCatT33B.1.1.3330.003229
ORF1ab/nsp31528I1528IatCatT33B.1.36.290.001552
ORF1ab/nsp31528I1528delATC---33B.1.617.10.000387
ORF1ab/nsp31528I1528IatCatT33B.1.617.10.000387
ORF1ab/nsp31528I1528LAtcCtc13B.1.617.20.000004
ORF1ab/nsp31528I1528LAtCCtT13B.1.617.20.000004
ORF1ab/nsp31528I1528LAtCTtG13B.1.617.20.000004
ORF1ab/nsp31528I1528IatCatT33B.6.60.002667
ORF1ab/nsp31528I1528IatCatT33C.140.012987
ORF1ab/nsp31528I1528IatCatT33C.370.000348
ORF1ab/nsp31528I1528IatCatT23P.1.150.000465
ORF1ab/nsp31528I1528IatCatA13P.1.150.000232
ORF1ab/nsp31528I1528IatCatT33P.20.00056
ORF1ab/nsp31528I1528del1ATc-Ac220.111111
ORF1ab/nsp31528I1528del2ATc--c220.111111
ORF1ab/nsp31528I1528delATC---220.111111
ORF1ab/nsp31528I1528NaTcaAc120.055556
ORF1ab/nsp31528I1528NaTCaAT120.055556
ORF1ab/nsp31528I1528YATcTAc120.055556
ORF1ab/nsp31528I1528FAtcTtc120.055556
ORF1ab/nsp31528I1528FAtCTtT120.055556
ORF1ab/nsp31528I1528YATCTAT120.055556
ORF1ab/nsp31528I1528IatCatT22AE.30.064516
ORF1ab/nsp31528I1528AATcGCc22All0
ORF1ab/nsp31528I1528XATCTAG22All0
ORF1ab/nsp31528I1528IatCatT22AY.100.00106
ORF1ab/nsp31528I1528TaTcaCc22AY.1110.000366
ORF1ab/nsp31528I1528IatCatT22AY.1170.000169
ORF1ab/nsp31528I1528delATC---22AY.120.20.002571
ORF1ab/nsp31528I1528IatCatT22AY.140.000176
ORF1ab/nsp31528I1528IatCatA12AY.230.00007
ORF1ab/nsp31528I1528IatCatT12AY.230.00007
ORF1ab/nsp31528I1528TaTcaCc22AY.250.000012
ORF1ab/nsp31528I1528IatCatT22AY.320.001065
ORF1ab/nsp31528I1528TaTcaCc22AY.320.001065
ORF1ab/nsp31528I1528IatCatT22AY.340.000194
ORF1ab/nsp31528I1528TaTcaCc22AY.360.000296
ORF1ab/nsp31528I1528VAtcGtc22AY.390.000049
ORF1ab/nsp31528I1528FAtcTtc22AY.40.000003
ORF1ab/nsp31528I1528LAtcCtc22AY.40.000003
ORF1ab/nsp31528I1528IatCatT22AY.410.000588
ORF1ab/nsp31528I1528IatCatT22AY.450.000243
ORF1ab/nsp31528I1528IatCatT22AY.460.000208
ORF1ab/nsp31528I1528delATC---22AY.46.60.000144
ORF1ab/nsp31528I1528delATC---22AY.50.000041
ORF1ab/nsp31528I1528IatCatT22AY.5.30.000675
ORF1ab/nsp31528I1528IatCatT22AY.550.001835
ORF1ab/nsp31528I1528LAtcCtc12AY.590.00053
ORF1ab/nsp31528I1528LAtCTtG12AY.590.00053
ORF1ab/nsp31528I1528IatCatT22AY.690.000373
ORF1ab/nsp31528I1528IatCatT22AY.740.000231
ORF1ab/nsp31528I1528IatCatT22AY.780.003082
ORF1ab/nsp31528I1528TaTcaCc22AY.9.20.000073
ORF1ab/nsp31528I1528delATC---22AY.9.20.000073
ORF1ab/nsp31528I1528LAtCCtG12AY.9.20.000037
ORF1ab/nsp31528I1528LAtcCtc12AY.9.20.000037
ORF1ab/nsp31528I1528TaTcaCc22AY.99.20.000184
ORF1ab/nsp31528I1528SaTcaGc12B.10.000009
ORF1ab/nsp31528I1528SaTCaGT12B.10.000009
ORF1ab/nsp31528I1528IatCatT22B.1.1.1170.019417
ORF1ab/nsp31528I1528IatCatT22B.1.1.370.000386
ORF1ab/nsp31528I1528IatCatT22B.1.1.3720.001377
ORF1ab/nsp31528I1528IatCatT22B.1.1.4340.000697
ORF1ab/nsp31528I1528VAtcGtc22B.1.1.5190.000079
ORF1ab/nsp31528I1528del2aTCa--22B.1.1.70.000002
ORF1ab/nsp31528I1528delATC---22B.1.1770.000026
ORF1ab/nsp31528I1528TaTcaCc22B.1.1770.000026
ORF1ab/nsp31528I1528IatCatT22B.1.177.870.001456
ORF1ab/nsp31528I1528IatCatT22B.1.2100.004264
ORF1ab/nsp31528I1528LAtcCtc22B.1.2210.000142
ORF1ab/nsp31528I1528IatCatT22B.1.2340.000264
ORF1ab/nsp31528I1528delATC---22B.1.2580.000133
ORF1ab/nsp31528I1528TaTcaCc22B.1.3360.004878
ORF1ab/nsp31528I1528IatCatT22B.1.351.20.000605
ORF1ab/nsp31528I1528TaTcaCc22B.1.351.30.001753
ORF1ab/nsp31528I1528TaTcaCc22B.1.36.10.002281
ORF1ab/nsp31528I1528IatCatT22B.1.36.170.000988
ORF1ab/nsp31528I1528delATC---22B.1.4110.007407
ORF1ab/nsp31528I1528IatCatT22B.1.4700.002809
ORF1ab/nsp31528I1528delATC---22B.1.4970.00063
ORF1ab/nsp31528I1528delATC---22B.1.5250.000226
ORF1ab/nsp31528I1528VAtcGtc22B.1.617.10.000258
ORF1ab/nsp31528I1528del1aTca-c12B.1.617.10.000129
ORF1ab/nsp31528I1528del1atCat-12B.1.617.10.000129
ORF1ab/nsp31528I1528YATcTAc22B.1.617.20.000008
ORF1ab/nsp31528I1528NaTcaAc12B.1.617.20.000004
ORF1ab/nsp31528I1528NaTCaAT12B.1.617.20.000004
ORF1ab/nsp31528I1528TaTcaCc22B.1.6210.000177
ORF1ab/nsp31528I1528delATC---22B.1.6280.000705
ORF1ab/nsp31528I1528NaTcaAc12B.600.015873
ORF1ab/nsp31528I1528NaTCaAT12B.600.015873
ORF1ab/nsp31528I1528IatCatT22C.350.001548
ORF1ab/nsp31528I1528TaTcaCc22P.10.000032
ORF1ab/nsp31528I1528VAtcGtc22Q.10.000253
ORF1ab/nsp31528I1528IatCatT110.055556
ORF1ab/nsp31528I1528IatCatT11A.190.009434
ORF1ab/nsp31528I1528VAtcGtc11A.20.000662
ORF1ab/nsp31528I1528IatCatT11A.2.50.000499
ORF1ab/nsp31528I1528IatCatT11A.270.001656
ORF1ab/nsp31528I1528VAtcGtc11A.280.002646
ORF1ab/nsp31528I1528delATC---11A.280.002646
ORF1ab/nsp31528I1528delATC---11AD.20.000219
ORF1ab/nsp31528I1528HATCCAT11All0
ORF1ab/nsp31528I1528QATCCAG11All0
ORF1ab/nsp31528I1528IatCatT11AW.10.003049
ORF1ab/nsp31528I1528delATC---11AY.1010.00049
ORF1ab/nsp31528I1528SaTcaGc11AY.1020.000027
ORF1ab/nsp31528I1528delATC---11AY.1030.000006
ORF1ab/nsp31528I1528SaTcaGc11AY.1030.000006
ORF1ab/nsp31528I1528RaTCaGG11AY.1070.000466
ORF1ab/nsp31528I1528LAtcCtc11AY.1080.001103
ORF1ab/nsp31528I1528IatCatT11AY.1100.000113
ORF1ab/nsp31528I1528TaTCaCA11AY.1160.000287
ORF1ab/nsp31528I1528KaTCaAG11AY.1190.000035
ORF1ab/nsp31528I1528SaTcaGc11AY.1190.000035
ORF1ab/nsp31528I1528VAtcGtc11AY.1190.000035
ORF1ab/nsp31528I1528delATC---11AY.1200.000037
ORF1ab/nsp31528I1528TaTcaCc11AY.1200.000037
ORF1ab/nsp31528I1528IatCatT11AY.1210.000135
ORF1ab/nsp31528I1528IatCatT11AY.240.000431
ORF1ab/nsp31528I1528VAtcGtc11AY.240.000431
ORF1ab/nsp31528I1528del2aTCa--11AY.250.000006
ORF1ab/nsp31528I1528VAtcGtc11AY.250.000006
ORF1ab/nsp31528I1528TaTcaCc11AY.290.000016
ORF1ab/nsp31528I1528TaTcaCc11AY.29.10.000221
ORF1ab/nsp31528I1528delATC---11AY.30.00001
ORF1ab/nsp31528I1528MatCatG11AY.30.00001
ORF1ab/nsp31528I1528IatCatT11AY.300.000396
ORF1ab/nsp31528I1528NaTcaAc11AY.300.000396
ORF1ab/nsp31528I1528delATC---11AY.330.000067
ORF1ab/nsp31528I1528IatCatT11AY.330.000067
ORF1ab/nsp31528I1528delATC---11AY.34.10.00051
ORF1ab/nsp31528I1528del1aTCaC-11AY.350.000233
ORF1ab/nsp31528I1528delATC---11AY.360.000148
ORF1ab/nsp31528I1528TaTCaCA11AY.380.000499
ORF1ab/nsp31528I1528IatCatT11AY.39.10.00004
ORF1ab/nsp31528I1528del2aTCa--11AY.40.000002
ORF1ab/nsp31528I1528IatCatT11AY.4.2.10.000149
ORF1ab/nsp31528I1528TaTcaCc11AY.4.2.10.000149
ORF1ab/nsp31528I1528IatCatT11AY.4.30.000842
ORF1ab/nsp31528I1528delATC---11AY.4.30.000842
ORF1ab/nsp31528I1528delATC---11AY.4.50.000107
ORF1ab/nsp31528I1528VAtcGtc11AY.430.000004
ORF1ab/nsp31528I1528SaTcaGc11AY.430.000004
ORF1ab/nsp31528I1528del2aTCa--11AY.440.000006
ORF1ab/nsp31528I1528del1aTCa-A11AY.440.000006
ORF1ab/nsp31528I1528delATC---11AY.440.000006
ORF1ab/nsp31528I1528del2ATc--c11AY.460.000104
ORF1ab/nsp31528I1528IatCatT11AY.46.20.000635
ORF1ab/nsp31528I1528VAtcGtc11AY.46.40.000165
ORF1ab/nsp31528I1528TaTcaCc11AY.46.60.000072
ORF1ab/nsp31528I1528VAtcGtc11AY.470.000031
ORF1ab/nsp31528I1528TaTcaCc11AY.50.000021
ORF1ab/nsp31528I1528IatCatT11AY.510.000909
ORF1ab/nsp31528I1528TaTcaCc11AY.560.001605
ORF1ab/nsp31528I1528FAtcTtc11AY.590.00053
ORF1ab/nsp31528I1528TaTcaCc11AY.60.000041
ORF1ab/nsp31528I1528IatCatT11AY.600.000938
ORF1ab/nsp31528I1528VAtcGtc11AY.620.000436
ORF1ab/nsp31528I1528IatCatT11AY.630.000387
ORF1ab/nsp31528I1528delATC---11AY.660.00107
ORF1ab/nsp31528I1528delATC---11AY.670.000464
ORF1ab/nsp31528I1528IatCatT11AY.670.000464
ORF1ab/nsp31528I1528TaTcaCc11AY.680.000274
ORF1ab/nsp31528I1528LAtcCtc11AY.680.000274
ORF1ab/nsp31528I1528FAtcTtc11AY.690.000187
ORF1ab/nsp31528I1528IatCatT11AY.70.000196
ORF1ab/nsp31528I1528TaTcaCc11AY.7.10.000113
ORF1ab/nsp31528I1528IatCatT11AY.7.20.000559
ORF1ab/nsp31528I1528TaTcaCc11AY.740.000116
ORF1ab/nsp31528I1528delATC---11AY.750.000056
ORF1ab/nsp31528I1528TaTcaCc11AY.750.000056
ORF1ab/nsp31528I1528VAtcGtc11AY.75.10.00018
ORF1ab/nsp31528I1528delATC---11AY.760.004831
ORF1ab/nsp31528I1528delATC---11AY.840.000437
ORF1ab/nsp31528I1528delATC---11AY.90.000068
ORF1ab/nsp31528I1528IatCatT11AY.90.000068
ORF1ab/nsp31528I1528VAtcGtc11AY.9.10.000084
ORF1ab/nsp31528I1528SaTcaGc11AY.9.20.000037
ORF1ab/nsp31528I1528MatCatG11AY.9.20.000037
ORF1ab/nsp31528I1528IatCatT11AY.940.000443
ORF1ab/nsp31528I1528IatCatT11AY.980.000079
ORF1ab/nsp31528I1528VAtcGtc11AY.98.10.000048
ORF1ab/nsp31528I1528VAtcGtc11AY.990.001049
ORF1ab/nsp31528I1528IatCatT11AY.99.20.000092
ORF1ab/nsp31528I1528KaTCaAG11B.10.000009
ORF1ab/nsp31528I1528HATCCAT11B.10.000009
ORF1ab/nsp31528I1528QATCCAG11B.10.000009
ORF1ab/nsp31528I1528FAtcTtc11B.10.000009
ORF1ab/nsp31528I1528VAtcGtc11B.10.000009
ORF1ab/nsp31528I1528MatCatG11B.1.10.000018
ORF1ab/nsp31528I1528del1aTca-c11B.1.10.000018
ORF1ab/nsp31528I1528TaTcaCc11B.1.10.000018
ORF1ab/nsp31528I1528AATcGCc11B.1.10.000018
ORF1ab/nsp31528I1528del1aTca-c11B.1.1.1010.01
ORF1ab/nsp31528I1528IatCatT11B.1.1.1280.007092
ORF1ab/nsp31528I1528IatCatT11B.1.1.1380.006061
ORF1ab/nsp31528I1528delATC---11B.1.1.1390.022727
ORF1ab/nsp31528I1528delATC---11B.1.1.1590.004673
ORF1ab/nsp31528I1528IatCatT11B.1.1.1720.018182
ORF1ab/nsp31528I1528IatCatT11B.1.1.1890.001513
ORF1ab/nsp31528I1528TaTcaCc11B.1.1.1890.001513
ORF1ab/nsp31528I1528IatCatT11B.1.1.2070.001182
ORF1ab/nsp31528I1528TaTcaCc11B.1.1.2140.000055
ORF1ab/nsp31528I1528delATC---11B.1.1.2210.010101
ORF1ab/nsp31528I1528IatCatT11B.1.1.250.000569
ORF1ab/nsp31528I1528IatCatT11B.1.1.2700.010309
ORF1ab/nsp31528I1528IatCatT11B.1.1.2770.000759
ORF1ab/nsp31528I1528IatCatT11B.1.1.280.000311
ORF1ab/nsp31528I1528IatCatT11B.1.1.2840.000107
ORF1ab/nsp31528I1528MatCatG11B.1.1.2940.001266
ORF1ab/nsp31528I1528delATC---11B.1.1.3060.000438
ORF1ab/nsp31528I1528del1aTCaC-11B.1.1.3060.000438
ORF1ab/nsp31528I1528IatCatT11B.1.1.3480.000796
ORF1ab/nsp31528I1528delATC---11B.1.1.3540.004386
ORF1ab/nsp31528I1528delATC---11B.1.1.460.004367
ORF1ab/nsp31528I1528VAtcGtc11B.1.1.4860.001577
ORF1ab/nsp31528I1528IatCatT11B.1.1.5070.008696
ORF1ab/nsp31528I1528delATC---11B.1.1.5190.00004
ORF1ab/nsp31528I1528IatCatT11B.1.1.5260.003546
ORF1ab/nsp31528I1528IatCatT11B.1.1.830.00271
ORF1ab/nsp31528I1528delATC---11B.1.1150.021739
ORF1ab/nsp31528I1528IatCatT11B.1.1270.002198
ORF1ab/nsp31528I1528IatCatT11B.1.1280.000635
ORF1ab/nsp31528I1528IatCatT11B.1.1460.004237
ORF1ab/nsp31528I1528IatCatA11B.1.1570.002985
ORF1ab/nsp31528I1528delATC---11B.1.1600.000031
ORF1ab/nsp31528I1528IatCatT11B.1.160.70.002079
ORF1ab/nsp31528I1528delATC---11B.1.1610.017241
ORF1ab/nsp31528I1528AATcGCc11B.1.1770.000013
ORF1ab/nsp31528I1528IatCatT11B.1.177.210.000076
ORF1ab/nsp31528I1528MatCatG11B.1.177.350.000691
ORF1ab/nsp31528I1528IatCatT11B.1.177.440.000519
ORF1ab/nsp31528I1528IatCatT11B.1.177.450.000381
ORF1ab/nsp31528I1528delATC---11B.1.177.620.001192
ORF1ab/nsp31528I1528IatCatT11B.1.177.860.000183
ORF1ab/nsp31528I1528del1aTca-c11B.1.20.000009
ORF1ab/nsp31528I1528delATC---11B.1.20.000009
ORF1ab/nsp31528I1528IatCatT11B.1.2060.000816
ORF1ab/nsp31528I1528delATC---11B.1.2100.002132
ORF1ab/nsp31528I1528IatCatT11B.1.2210.000071
ORF1ab/nsp31528I1528NaTcaAc11B.1.2210.000071
ORF1ab/nsp31528I1528SaTcaGc11B.1.2400.000216
ORF1ab/nsp31528I1528XATCTAG11B.1.2580.000067
ORF1ab/nsp31528I1528IatCatT11B.1.258.140.00098
ORF1ab/nsp31528I1528TaTcaCc11B.1.258.170.000104
ORF1ab/nsp31528I1528IatCatT11B.1.2650.001271
ORF1ab/nsp31528I1528TaTcaCc11B.1.3110.000275
ORF1ab/nsp31528I1528delATC---11B.1.3510.00003
ORF1ab/nsp31528I1528delATC---11B.1.36.290.000517
ORF1ab/nsp31528I1528VAtcGtc11B.1.36.290.000517
ORF1ab/nsp31528I1528VAtcGtc11B.1.36.310.001751
ORF1ab/nsp31528I1528del1aTca-c11B.1.36.80.001
ORF1ab/nsp31528I1528IatCatT11B.1.3750.00082
ORF1ab/nsp31528I1528IatCatT11B.1.3970.004854
ORF1ab/nsp31528I1528IatCatT11B.1.4090.000781
ORF1ab/nsp31528I1528delATC---11B.1.4150.014286
ORF1ab/nsp31528I1528delATC---11B.1.416.10.001563
ORF1ab/nsp31528I1528VAtcGtc11B.1.4330.003195
ORF1ab/nsp31528I1528SaTcaGc11B.1.4520.013699
ORF1ab/nsp31528I1528delATC---11B.1.4530.003236
ORF1ab/nsp31528I1528RaTCaGA11B.1.466.20.000391
ORF1ab/nsp31528I1528MatCatG11B.1.4970.000315
ORF1ab/nsp31528I1528VAtcGtc11B.1.4990.00105
ORF1ab/nsp31528I1528del1Atc-tc11B.1.5260.000024
ORF1ab/nsp31528I1528SaTcaGc11B.1.5260.000024
ORF1ab/nsp31528I1528TaTcaCc11B.1.5260.000024
ORF1ab/nsp31528I1528IatCatT11B.1.5300.007143
ORF1ab/nsp31528I1528delATC---11B.1.575.10.002439
ORF1ab/nsp31528I1528IatCatT11B.1.5760.000907
ORF1ab/nsp31528I1528IatCatT11B.1.5810.009434
ORF1ab/nsp31528I1528IatCatT11B.1.5820.000491
ORF1ab/nsp31528I1528delATC---11B.1.5950.000261
ORF1ab/nsp31528I1528IatCatT11B.1.5970.00463
ORF1ab/nsp31528I1528IatCatT11B.1.6040.017241
ORF1ab/nsp31528I1528IatCatT11B.1.6120.002653
ORF1ab/nsp31528I1528LAtcCtc11B.1.617.10.000129
ORF1ab/nsp31528I1528FAtcTtc11B.1.617.20.000004
ORF1ab/nsp31528I1528SaTcaGc11B.1.617.20.000004
ORF1ab/nsp31528I1528XATCTAG11B.1.617.20.000004
ORF1ab/nsp31528I1528MatCatG11B.1.617.20.000004
ORF1ab/nsp31528I1528del1Atc-tc11B.1.617.20.000004
ORF1ab/nsp31528I1528del1atCat-11B.1.619.10.000641
ORF1ab/nsp31528I1528IatCatA11B.1.619.10.000641
ORF1ab/nsp31528I1528IatCatT11B.1.6200.000946
ORF1ab/nsp31528I1528delATC---11B.1.6210.000089
ORF1ab/nsp31528I1528NaTcaAc11B.1.6210.000089
ORF1ab/nsp31528I1528del2aTCa--11B.1.6280.000352
ORF1ab/nsp31528I1528TaTcaCc11B.1.6280.000352
ORF1ab/nsp31528I1528SaTcaGc11B.400.000364
ORF1ab/nsp31528I1528IatCatT11B.600.015873
ORF1ab/nsp31528I1528delATC---11C.350.000774
ORF1ab/nsp31528I1528IatCatT11C.36.10.004149
ORF1ab/nsp31528I1528FAtcTtc11D.20.000075
ORF1ab/nsp31528I1528TaTcaCc11D.20.000075
ORF1ab/nsp31528I1528NaTcaAc11D.20.000075
ORF1ab/nsp31528I1528IatCatT11K.10.02381
ORF1ab/nsp31528I1528delATC---11P.10.000016
ORF1ab/nsp31528I1528LAtCCtT11P.10.000016
ORF1ab/nsp31528I1528delATC---11P.1.10.000318
ORF1ab/nsp31528I1528IatCatT11P.1.10.000318
ORF1ab/nsp31528I1528IatCatT11P.1.120.000484
ORF1ab/nsp31528I1528delATC---11P.1.150.000232
ORF1ab/nsp31528I1528IatCatT11P.1.170.000162
ORF1ab/nsp31528I1528delATC---11Q.20.000613
ORF1ab/nsp31528I1528IatCatT11Q.20.000613
ORF1ab/nsp31528I1528delATC---11Q.80.000165
ORF1ab/nsp31528I1528TaTcaCc11Q.80.000165