CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1527 & Codon = gTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31527A1527VA2345VnonsyngCagTa20223202220.9999517298-7300

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31527A1527VgCagTa2022220223All0.003868
ORF1ab/nsp31527A1527VgCagTa1580315803B.1.1.70.014147
ORF1ab/nsp31527A1527VgCagTa10141014B.1.1.5190.040267
ORF1ab/nsp31527A1527VgCagTa320320Q.80.05277
ORF1ab/nsp31527A1527VgCagTa262262AY.30.002606
ORF1ab/nsp31527A1527VgCagTa167167AY.4.20.003622
ORF1ab/nsp31527A1527VgCagTa161161B.1.20.001418
ORF1ab/nsp31527A1527VgCagTa158158AY.290.002492
ORF1ab/nsp31527A1527VgCagTa156156B.1.3510.004637
ORF1ab/nsp31527A1527VgCagTa155155B.1.10.002812
ORF1ab/nsp31527A1527VgCagTa138138AY.40.000215
ORF1ab/nsp31527A1527VgCagTa125125B.1.617.20.000471
ORF1ab/nsp31527A1527VgCagTa113114B.10.001035
ORF1ab/nsp31527A1527VgCagTa102102AY.440.000621
ORF1ab/nsp31527A1527VgCagTa101101B.1.1.250.057419
ORF1ab/nsp31527A1527VgCagTa8383AY.1030.000515
ORF1ab/nsp31527A1527VgCagTa6969P.10.001087
ORF1ab/nsp31527A1527VgCagTa6868AY.430.000301
ORF1ab/nsp31527A1527VgCagTa6666AY.60.002714
ORF1ab/nsp31527A1527VgCagTa6666B.1.6100.234043
ORF1ab/nsp31527A1527VgCagTa6363B.1.1770.00083
ORF1ab/nsp31527A1527VgCagTa5353AA.60.854839
ORF1ab/nsp31527A1527VgCagTa5151B.1.5950.013309
ORF1ab/nsp31527A1527VgCagTa4545AY.260.001274
ORF1ab/nsp31527A1527VgCagTa4141AY.1180.002569
ORF1ab/nsp31527A1527VgCagTa4040B.1.438.10.00429
ORF1ab/nsp31527A1527VgCagTa3434B.1.1.4640.050074
ORF1ab/nsp31527A1527VgCagTa3232AY.250.000192
ORF1ab/nsp31527A1527VgCagTa3131B.1.1.2650.097792
ORF1ab/nsp31527A1527VgCagTa3131B.1.4290.000729
ORF1ab/nsp31527A1527VgCagTa3030B.1.5250.003395
ORF1ab/nsp31527A1527VgCagTa2828AY.390.000692
ORF1ab/nsp31527A1527VgCagTa2727Q.10.003411
ORF1ab/nsp31527A1527VgCagTa2626B.1.2430.001809
ORF1ab/nsp31527A1527VgCagTa2121B.1.6090.010067
ORF1ab/nsp31527A1527VgCagTa1919AY.470.000591
ORF1ab/nsp31527A1527VgCagTa1919AY.7.10.002141
ORF1ab/nsp31527A1527VgCagTa1616AY.1160.004588
ORF1ab/nsp31527A1527VgCagTa1313AY.1020.000345
ORF1ab/nsp31527A1527VgCagTa1212AY.200.000466
ORF1ab/nsp31527A1527VgCagTa1111B.1.1.2940.013924
ORF1ab/nsp31527A1527VgCagTa1111B.1.4270.000555
ORF1ab/nsp31527A1527VgCagTa1010B.1.177.600.002184
ORF1ab/nsp31527A1527VgCagTa1010B.1.2210.00071
ORF1ab/nsp31527A1527VgCagTa1010R.10.0009
ORF1ab/nsp31527A1527VgCagTa99AY.1000.000414
ORF1ab/nsp31527A1527VgCagTa99AY.450.001095
ORF1ab/nsp31527A1527VgCagTa99B.1.1.630.003472
ORF1ab/nsp31527A1527VgCagTa99B.1.4740.01711
ORF1ab/nsp31527A1527VgCagTa99B.1.5260.000212
ORF1ab/nsp31527A1527VgCagTa88AY.1200.000297
ORF1ab/nsp31527A1527VgCagTa88B.1.177.120.001214
ORF1ab/nsp31527A1527VgCagTa88B.1.6141
ORF1ab/nsp31527A1527VgCagTa88P.1.140.000382
ORF1ab/nsp31527A1527VgCagTa77AY.360.001037
ORF1ab/nsp31527A1527VgCagTa77AY.50.000145
ORF1ab/nsp31527A1527VgCagTa77AY.930.001912
ORF1ab/nsp31527A1527VgCagTa77B.1.1.2160.006233
ORF1ab/nsp31527A1527VgCagTa77B.1.1.510.012027
ORF1ab/nsp31527A1527VgCagTa77C.370.000812
ORF1ab/nsp31527A1527VgCagTa66AY.750.000336
ORF1ab/nsp31527A1527VgCagTa66B.1.1.1920.013857
ORF1ab/nsp31527A1527VgCagTa66B.1.5960.000523
ORF1ab/nsp31527A1527VgCagTa66C.260.044118
ORF1ab/nsp31527A1527VgCagTa55AY.1110.000916
ORF1ab/nsp31527A1527VgCagTa55AY.140.00044
ORF1ab/nsp31527A1527VgCagTa55AY.29.10.001103
ORF1ab/nsp31527A1527VgCagTa55AY.420.000201
ORF1ab/nsp31527A1527VgCagTa55AY.910.003652
ORF1ab/nsp31527A1527VgCagTa55AY.98.10.000242
ORF1ab/nsp31527A1527VgCagTa55B.1.1600.000156
ORF1ab/nsp31527A1527VgCagTa55B.1.351.30.004382
ORF1ab/nsp31527A1527VgCagTa55B.1.36.290.002587
ORF1ab/nsp31527A1527VgCagTa55B.1.9.50.028409
ORF1ab/nsp31527A1527VgCagTa55P.20.000933
ORF1ab/nsp31527A1527VgCagTa44A.2.50.001996
ORF1ab/nsp31527A1527VgCagTa44AY.330.000267
ORF1ab/nsp31527A1527VgCagTa44AY.39.10.000158
ORF1ab/nsp31527A1527VgCagTa44AY.9.10.000335
ORF1ab/nsp31527A1527VgCagTa44B.1.1.280.001245
ORF1ab/nsp31527A1527VgCagTa44B.1.1.3050.015444
ORF1ab/nsp31527A1527VgCagTa44B.1.1.500.002716
ORF1ab/nsp31527A1527VgCagTa44B.1.177.80.00301
ORF1ab/nsp31527A1527VgCagTa44B.1.2290.038835
ORF1ab/nsp31527A1527VgCagTa44B.1.4160.005076
ORF1ab/nsp31527A1527VgCagTa44P.1.10.001271
ORF1ab/nsp31527A1527VgCagTa33AY.1050.001929
ORF1ab/nsp31527A1527VgCagTa33B.1.1.1890.004539
ORF1ab/nsp31527A1527VgCagTa33B.1.1.3480.002389
ORF1ab/nsp31527A1527VgCagTa33B.1.1.4160.002715
ORF1ab/nsp31527A1527VgCagTa33B.1.177.810.000568
ORF1ab/nsp31527A1527VgCagTa33B.1.214.20.001799
ORF1ab/nsp31527A1527VgCagTa33B.1.617.10.000387
ORF1ab/nsp31527A1527VgCagTa33C.170.166667
ORF1ab/nsp31527A1527VgCagTa33C.360.002732
ORF1ab/nsp31527A1527VgCagTa33D.20.000225
ORF1ab/nsp31527A1527VgCagTa22AY.1090.001479
ORF1ab/nsp31527A1527VgCagTa22AY.1190.000071
ORF1ab/nsp31527A1527VgCagTa22AY.1210.000271
ORF1ab/nsp31527A1527VgCagTa22AY.540.000191
ORF1ab/nsp31527A1527VgCagTa22AY.70.000392
ORF1ab/nsp31527A1527VgCagTa22AY.980.000158
ORF1ab/nsp31527A1527VgCagTa22AY.99.20.000184
ORF1ab/nsp31527A1527VgCagTa22B.1.1.10.000653
ORF1ab/nsp31527A1527VgCagTa22B.1.1.2690.002706
ORF1ab/nsp31527A1527VgCagTa22B.1.1.2840.000215
ORF1ab/nsp31527A1527VgCagTa22B.1.1.3170.000823
ORF1ab/nsp31527A1527VgCagTa22B.1.1.540.006042
ORF1ab/nsp31527A1527VgCagTa22B.1.177.210.000153
ORF1ab/nsp31527A1527VgCagTa22B.1.177.800.003824
ORF1ab/nsp31527A1527VgCagTa22B.1.177.870.001456
ORF1ab/nsp31527A1527VgCagTa22B.1.2580.000133
ORF1ab/nsp31527A1527VgCagTa22B.1.258.170.000208
ORF1ab/nsp31527A1527VgCagTa22B.1.3110.000549
ORF1ab/nsp31527A1527VgCagTa22B.1.351.50.001199
ORF1ab/nsp31527A1527VgCagTa22B.1.360.000292
ORF1ab/nsp31527A1527VgCagTa22B.1.36.360.001204
ORF1ab/nsp31527A1527VgCagTa22B.1.36.80.002
ORF1ab/nsp31527A1527VgCagTa22B.1.3690.00057
ORF1ab/nsp31527A1527VgCagTa22B.1.5240.002813
ORF1ab/nsp31527A1527VgCagTa22B.1.5750.000607
ORF1ab/nsp31527A1527VgCagTa22B.1.6370.000146
ORF1ab/nsp31527A1527VgCagTa22N.90.011905
ORF1ab/nsp31527A1527VgCagTa22P.1.170.000324
ORF1ab/nsp31527A1527VgCagTa22Q.30.00029
ORF1ab/nsp31527A1527VgCagTa110.055556
ORF1ab/nsp31527A1527VgCagTa11A.23.10.000704
ORF1ab/nsp31527A1527VgCagTa11A.270.001656
ORF1ab/nsp31527A1527VgCagTa11AD.20.000219
ORF1ab/nsp31527A1527VgCagTa11AU.20.002421
ORF1ab/nsp31527A1527VgCagTa11AU.30.00211
ORF1ab/nsp31527A1527VgCagTa11AW.10.003049
ORF1ab/nsp31527A1527VgCagTa11AY.1060.000335
ORF1ab/nsp31527A1527VgCagTa11AY.1080.001103
ORF1ab/nsp31527A1527VgCagTa11AY.1170.000085
ORF1ab/nsp31527A1527VgCagTa11AY.160.00038
ORF1ab/nsp31527A1527VgCagTa11AY.20.000356
ORF1ab/nsp31527A1527VgCagTa11AY.23.10.000417
ORF1ab/nsp31527A1527VgCagTa11AY.270.000065
ORF1ab/nsp31527A1527VgCagTa11AY.320.000532
ORF1ab/nsp31527A1527VgCagTa11AY.4.50.000107
ORF1ab/nsp31527A1527VgCagTa11AY.460.000104
ORF1ab/nsp31527A1527VgCagTa11AY.5.40.000277
ORF1ab/nsp31527A1527VgCagTa11AY.590.00053
ORF1ab/nsp31527A1527VgCagTa11AY.620.000436
ORF1ab/nsp31527A1527VgCagTa11AY.650.000533
ORF1ab/nsp31527A1527VgCagTa11AY.680.000274
ORF1ab/nsp31527A1527VgCagTa11AY.690.000187
ORF1ab/nsp31527A1527VgCagTa11AY.740.000116
ORF1ab/nsp31527A1527VgCagTa11AY.90.000068
ORF1ab/nsp31527A1527VgCagTa11AY.940.000443
ORF1ab/nsp31527A1527VgCagTa11B.1.1.100.001115
ORF1ab/nsp31527A1527VgCagTa11B.1.1.1900.05
ORF1ab/nsp31527A1527VgCagTa11B.1.1.2140.000055
ORF1ab/nsp31527A1527VgCagTa11B.1.1.2200.001859
ORF1ab/nsp31527A1527VgCagTa11B.1.1.2220.000204
ORF1ab/nsp31527A1527VgCagTa11B.1.1.2540.011236
ORF1ab/nsp31527A1527VgCagTa11B.1.1.3180.000302
ORF1ab/nsp31527A1527VgCagTa11B.1.1.330.000421
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4070.041667
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4090.002833
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4120.007634
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4320.001266
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4400.011765
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4480.002033
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4860.001577
ORF1ab/nsp31527A1527VgCagTa11B.1.1.560.017857
ORF1ab/nsp31527A1527VgCagTa11B.1.1.700.000341
ORF1ab/nsp31527A1527VgCagTa11B.1.1400.018868
ORF1ab/nsp31527A1527VgCagTa11B.1.1700.00431
ORF1ab/nsp31527A1527VgCagTa11B.1.177.100.000878
ORF1ab/nsp31527A1527VgCagTa11B.1.177.150.000631
ORF1ab/nsp31527A1527VgCagTa11B.1.177.20.004545
ORF1ab/nsp31527A1527VgCagTa11B.1.177.200.001517
ORF1ab/nsp31527A1527VgCagTa11B.1.177.330.001645
ORF1ab/nsp31527A1527VgCagTa11B.1.177.530.002392
ORF1ab/nsp31527A1527VgCagTa11B.1.177.70.000165
ORF1ab/nsp31527A1527VgCagTa11B.1.177.770.000726
ORF1ab/nsp31527A1527VgCagTa11B.1.177.790.002342
ORF1ab/nsp31527A1527VgCagTa11B.1.2140.003663
ORF1ab/nsp31527A1527VgCagTa11B.1.2320.000537
ORF1ab/nsp31527A1527VgCagTa11B.1.2340.000132
ORF1ab/nsp31527A1527VgCagTa11B.1.2360.002053
ORF1ab/nsp31527A1527VgCagTa11B.1.2390.001221
ORF1ab/nsp31527A1527VgCagTa11B.1.2400.000216
ORF1ab/nsp31527A1527VgCagTa11B.1.2810.021739
ORF1ab/nsp31527A1527VgCagTa11B.1.3750.00082
ORF1ab/nsp31527A1527VgCagTa11B.1.4260.001009
ORF1ab/nsp31527A1527VgCagTa11B.1.4280.00102
ORF1ab/nsp31527A1527VgCagTa11B.1.4560.003268
ORF1ab/nsp31527A1527VgCagTa11B.1.466.20.000391
ORF1ab/nsp31527A1527VgCagTa11B.1.4990.00105
ORF1ab/nsp31527A1527VgCagTa11B.1.5650.00081
ORF1ab/nsp31527A1527VgCagTa11B.1.588.10.038462
ORF1ab/nsp31527A1527VgCagTa11B.1.6210.000089
ORF1ab/nsp31527A1527VgCagTa11B.1.6360.006711
ORF1ab/nsp31527A1527VgCagTa11B.290.003509
ORF1ab/nsp31527A1527VgCagTa11B.30.000831
ORF1ab/nsp31527A1527VgCagTa11B.40.002208
ORF1ab/nsp31527A1527VgCagTa11B.60.00091
ORF1ab/nsp31527A1527VgCagTa11B.6.60.000889
ORF1ab/nsp31527A1527VgCagTa11C.160.00106
ORF1ab/nsp31527A1527VgCagTa11C.350.000774
ORF1ab/nsp31527A1527VgCagTa11P.1.120.000484
ORF1ab/nsp31527A1527VgCagTa11P.1.150.000232
ORF1ab/nsp31527A1527VgCagTa11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.