CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1527

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1527	A1527V	A2345V	nonsyn	gCa	gTa	20223	20222	0.999951	7298-7300
ORF1ab/nsp3	1527	A1527V	A2345V	nonsyn	gCA	gTG	20223	1	0.0000494486	7298-7300
ORF1ab/nsp3	1527	A1527A	A2345A	syn	gcA	gcG	205	124	0.604878	7298-7300
ORF1ab/nsp3	1527	A1527A	A2345A	syn	gcA	gcT	205	69	0.336585	7298-7300
ORF1ab/nsp3	1527	A1527A	A2345A	syn	gcA	gcC	205	12	0.0585366	7298-7300
ORF1ab/nsp3	1527	A1527del	A2345del	del	GCA	---	140	140	1	7298-7300
ORF1ab/nsp3	1527	A1527S	A2345S	nonsyn	Gca	Tca	124	120	0.967742	7298-7300
ORF1ab/nsp3	1527	A1527S	A2345S	nonsyn	GcA	TcC	124	2	0.016129	7298-7300
ORF1ab/nsp3	1527	A1527S	A2345S	nonsyn	GcA	TcG	124	1	0.00806452	7298-7300
ORF1ab/nsp3	1527	A1527S	A2345S	nonsyn	GcA	TcT	124	1	0.00806452	7298-7300
ORF1ab/nsp3	1527	A1527T	A2345T	nonsyn	Gca	Aca	122	120	0.983607	7298-7300
ORF1ab/nsp3	1527	A1527T	A2345T	nonsyn	GcA	AcT	122	1	0.00819672	7298-7300
ORF1ab/nsp3	1527	A1527T	A2345T	nonsyn	GcA	AcC	122	1	0.00819672	7298-7300
ORF1ab/nsp3	1527	A1527P	A2345P	nonsyn	Gca	Cca	20	18	0.9	7298-7300
ORF1ab/nsp3	1527	A1527P	A2345P	nonsyn	GcA	CcT	20	1	0.05	7298-7300
ORF1ab/nsp3	1527	A1527P	A2345P	nonsyn	GcA	CcG	20	1	0.05	7298-7300
ORF1ab/nsp3	1527	A1527del1	A2345del1	del	gcA	gc-	15	14	0.933333	7298-7300
ORF1ab/nsp3	1527	A1527del1	A2345del1	del	Gca	-ca	15	1	0.0666667	7298-7300
ORF1ab/nsp3	1527	A1527E	A2345E	nonsyn	gCa	gAa	13	13	1	7298-7300
ORF1ab/nsp3	1527	A1527G	A2345G	nonsyn	gCa	gGa	12	8	0.666667	7298-7300
ORF1ab/nsp3	1527	A1527G	A2345G	nonsyn	gCA	gGC	12	3	0.25	7298-7300
ORF1ab/nsp3	1527	A1527G	A2345G	nonsyn	gCA	gGT	12	1	0.0833333	7298-7300
ORF1ab/nsp3	1527	A1527X	A2345X	nonsyn	GCa	TGa	4	3	0.75	7298-7300
ORF1ab/nsp3	1527	A1527X	A2345X	nonsyn	GCA	TAG	4	1	0.25	7298-7300
ORF1ab/nsp3	1527	A1527del2	A2345del2	del	gCA	g--	3	3	1	7298-7300
ORF1ab/nsp3	1527	A1527C	A2345C	nonsyn	GCA	TGC	2	2	1	7298-7300
ORF1ab/nsp3	1527	A1527K	A2345K	nonsyn	GCa	AAa	2	2	1	7298-7300
ORF1ab/nsp3	1527	A1527R	A2345R	nonsyn	GCa	AGa	2	1	0.5	7298-7300
ORF1ab/nsp3	1527	A1527R	A2345R	nonsyn	GCA	CGG	2	1	0.5	7298-7300
ORF1ab/nsp3	1527	A1527H	A2345H	nonsyn	GCA	CAT	1	1	1	7298-7300
ORF1ab/nsp3	1527	A1527Y	A2345Y	nonsyn	GCA	TAT	1	1	1	7298-7300
ORF1ab/nsp3	1527	A1527Q	A2345Q	nonsyn	GCA	CAG	1	1	1	7298-7300
ORF1ab/nsp3	1527	A1527I	A2345I	nonsyn	GCa	ATa	1	1	1	7298-7300
ORF1ab/nsp3	1527	A1527L	A2345L	nonsyn	GCa	TTa	1	1	1	7298-7300

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1527	A1527V	gCa	gTa	20222	20223	All	0.003868
ORF1ab/nsp3	1527	A1527V	gCA	gTG	1	20223	All	0
ORF1ab/nsp3	1527	A1527V	gCa	gTa	15803	15803	B.1.1.7	0.014147
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1014	1014	B.1.1.519	0.040267
ORF1ab/nsp3	1527	A1527V	gCa	gTa	320	320	Q.8	0.05277
ORF1ab/nsp3	1527	A1527V	gCa	gTa	262	262	AY.3	0.002606
ORF1ab/nsp3	1527	A1527A	gcA	gcG	124	205	All	0.000024
ORF1ab/nsp3	1527	A1527A	gcA	gcT	69	205	All	0.000013
ORF1ab/nsp3	1527	A1527A	gcA	gcC	12	205	All	0.000002
ORF1ab/nsp3	1527	A1527V	gCa	gTa	167	167	AY.4.2	0.003622
ORF1ab/nsp3	1527	A1527V	gCa	gTa	161	161	B.1.2	0.001418
ORF1ab/nsp3	1527	A1527V	gCa	gTa	158	158	AY.29	0.002492
ORF1ab/nsp3	1527	A1527V	gCa	gTa	156	156	B.1.351	0.004637
ORF1ab/nsp3	1527	A1527V	gCa	gTa	155	155	B.1.1	0.002812
ORF1ab/nsp3	1527	A1527del	GCA	---	140	140	All	0.000027
ORF1ab/nsp3	1527	A1527V	gCa	gTa	138	138	AY.4	0.000215
ORF1ab/nsp3	1527	A1527V	gCa	gTa	125	125	B.1.617.2	0.000471
ORF1ab/nsp3	1527	A1527S	Gca	Tca	120	124	All	0.000023
ORF1ab/nsp3	1527	A1527S	GcA	TcC	2	124	All	0
ORF1ab/nsp3	1527	A1527S	GcA	TcG	1	124	All	0
ORF1ab/nsp3	1527	A1527S	GcA	TcT	1	124	All	0
ORF1ab/nsp3	1527	A1527T	Gca	Aca	120	122	All	0.000023
ORF1ab/nsp3	1527	A1527T	GcA	AcT	1	122	All	0
ORF1ab/nsp3	1527	A1527T	GcA	AcC	1	122	All	0
ORF1ab/nsp3	1527	A1527V	gCa	gTa	113	114	B.1	0.001035
ORF1ab/nsp3	1527	A1527V	gCA	gTG	1	114	B.1	0.000009
ORF1ab/nsp3	1527	A1527V	gCa	gTa	102	102	AY.44	0.000621
ORF1ab/nsp3	1527	A1527V	gCa	gTa	101	101	B.1.1.25	0.057419
ORF1ab/nsp3	1527	A1527V	gCa	gTa	83	83	AY.103	0.000515
ORF1ab/nsp3	1527	A1527V	gCa	gTa	69	69	P.1	0.001087
ORF1ab/nsp3	1527	A1527V	gCa	gTa	68	68	AY.43	0.000301
ORF1ab/nsp3	1527	A1527V	gCa	gTa	66	66	AY.6	0.002714
ORF1ab/nsp3	1527	A1527V	gCa	gTa	66	66	B.1.610	0.234043
ORF1ab/nsp3	1527	A1527V	gCa	gTa	63	63	B.1.177	0.00083
ORF1ab/nsp3	1527	A1527V	gCa	gTa	53	53	AA.6	0.854839
ORF1ab/nsp3	1527	A1527V	gCa	gTa	51	51	B.1.595	0.013309
ORF1ab/nsp3	1527	A1527V	gCa	gTa	45	45	AY.26	0.001274
ORF1ab/nsp3	1527	A1527A	gcA	gcG	31	42	B.1.617.2	0.000117
ORF1ab/nsp3	1527	A1527A	gcA	gcT	11	42	B.1.617.2	0.000041
ORF1ab/nsp3	1527	A1527V	gCa	gTa	41	41	AY.118	0.002569
ORF1ab/nsp3	1527	A1527S	Gca	Tca	40	40	AY.98.1	0.001937
ORF1ab/nsp3	1527	A1527V	gCa	gTa	40	40	B.1.438.1	0.00429
ORF1ab/nsp3	1527	A1527V	gCa	gTa	34	34	B.1.1.464	0.050074
ORF1ab/nsp3	1527	A1527V	gCa	gTa	32	32	AY.25	0.000192
ORF1ab/nsp3	1527	A1527V	gCa	gTa	31	31	B.1.1.265	0.097792
ORF1ab/nsp3	1527	A1527V	gCa	gTa	31	31	B.1.429	0.000729
ORF1ab/nsp3	1527	A1527T	Gca	Aca	30	30	AY.4	0.000047
ORF1ab/nsp3	1527	A1527V	gCa	gTa	30	30	B.1.525	0.003395
ORF1ab/nsp3	1527	A1527A	gcA	gcT	24	29	AY.4	0.000037
ORF1ab/nsp3	1527	A1527A	gcA	gcG	4	29	AY.4	0.000006
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	29	AY.4	0.000002
ORF1ab/nsp3	1527	A1527del	GCA	---	29	29	B.1.1.7	0.000026
ORF1ab/nsp3	1527	A1527T	Gca	Aca	29	29	B.1.234	0.003826
ORF1ab/nsp3	1527	A1527V	gCa	gTa	28	28	AY.39	0.000692
ORF1ab/nsp3	1527	A1527V	gCa	gTa	27	27	Q.1	0.003411
ORF1ab/nsp3	1527	A1527V	gCa	gTa	26	26	B.1.243	0.001809
ORF1ab/nsp3	1527	A1527A	gcA	gcG	18	21	AY.44	0.00011
ORF1ab/nsp3	1527	A1527A	gcA	gcT	3	21	AY.44	0.000018
ORF1ab/nsp3	1527	A1527V	gCa	gTa	21	21	B.1.609	0.010067
ORF1ab/nsp3	1527	A1527P	Gca	Cca	18	20	All	0.000003
ORF1ab/nsp3	1527	A1527P	GcA	CcG	1	20	All	0
ORF1ab/nsp3	1527	A1527P	GcA	CcT	1	20	All	0
ORF1ab/nsp3	1527	A1527V	gCa	gTa	19	19	AY.47	0.000591
ORF1ab/nsp3	1527	A1527V	gCa	gTa	19	19	AY.7.1	0.002141
ORF1ab/nsp3	1527	A1527V	gCa	gTa	16	16	AY.116	0.004588
ORF1ab/nsp3	1527	A1527S	Gca	Tca	16	16	AY.4	0.000025
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	14	15	All	0.000003
ORF1ab/nsp3	1527	A1527del1	Gca	-ca	1	15	All	0
ORF1ab/nsp3	1527	A1527T	Gca	Aca	14	14	B.1.2	0.000123
ORF1ab/nsp3	1527	A1527E	gCa	gAa	13	13	All	0.000002
ORF1ab/nsp3	1527	A1527V	gCa	gTa	13	13	AY.102	0.000345
ORF1ab/nsp3	1527	A1527A	gcA	gcG	13	13	AY.103	0.000081
ORF1ab/nsp3	1527	A1527del	GCA	---	13	13	AY.43	0.000058
ORF1ab/nsp3	1527	A1527S	Gca	Tca	13	13	B.1.1.7	0.000012
ORF1ab/nsp3	1527	A1527G	gCa	gGa	8	12	All	0.000002
ORF1ab/nsp3	1527	A1527G	gCA	gGC	3	12	All	0.000001
ORF1ab/nsp3	1527	A1527G	gCA	gGT	1	12	All	0
ORF1ab/nsp3	1527	A1527V	gCa	gTa	12	12	AY.20	0.000466
ORF1ab/nsp3	1527	A1527S	Gca	Tca	12	12	B.1.2	0.000106
ORF1ab/nsp3	1527	A1527V	gCa	gTa	11	11	B.1.1.294	0.013924
ORF1ab/nsp3	1527	A1527V	gCa	gTa	11	11	B.1.427	0.000555
ORF1ab/nsp3	1527	A1527A	gcA	gcG	6	10	B.1.1.7	0.000005
ORF1ab/nsp3	1527	A1527A	gcA	gcC	2	10	B.1.1.7	0.000002
ORF1ab/nsp3	1527	A1527A	gcA	gcT	2	10	B.1.1.7	0.000002
ORF1ab/nsp3	1527	A1527V	gCa	gTa	10	10	B.1.177.60	0.002184
ORF1ab/nsp3	1527	A1527V	gCa	gTa	10	10	B.1.221	0.00071
ORF1ab/nsp3	1527	A1527del	GCA	---	10	10	B.1.617.2	0.000038
ORF1ab/nsp3	1527	A1527V	gCa	gTa	10	10	R.1	0.0009
ORF1ab/nsp3	1527	A1527V	gCa	gTa	9	9	AY.100	0.000414
ORF1ab/nsp3	1527	A1527V	gCa	gTa	9	9	AY.45	0.001095
ORF1ab/nsp3	1527	A1527V	gCa	gTa	9	9	B.1.1.63	0.003472
ORF1ab/nsp3	1527	A1527A	gcA	gcG	9	9	B.1.243	0.000626
ORF1ab/nsp3	1527	A1527V	gCa	gTa	9	9	B.1.474	0.01711
ORF1ab/nsp3	1527	A1527V	gCa	gTa	9	9	B.1.526	0.000212
ORF1ab/nsp3	1527	A1527A	gcA	gcT	8	8	AY.100	0.000368
ORF1ab/nsp3	1527	A1527V	gCa	gTa	8	8	AY.120	0.000297
ORF1ab/nsp3	1527	A1527V	gCa	gTa	8	8	B.1.177.12	0.001214
ORF1ab/nsp3	1527	A1527V	gCa	gTa	8	8	B.1.614	1
ORF1ab/nsp3	1527	A1527V	gCa	gTa	8	8	P.1.14	0.000382
ORF1ab/nsp3	1527	A1527V	gCa	gTa	7	7	AY.36	0.001037
ORF1ab/nsp3	1527	A1527V	gCa	gTa	7	7	AY.5	0.000145
ORF1ab/nsp3	1527	A1527V	gCa	gTa	7	7	AY.93	0.001912
ORF1ab/nsp3	1527	A1527V	gCa	gTa	7	7	B.1.1.216	0.006233
ORF1ab/nsp3	1527	A1527V	gCa	gTa	7	7	B.1.1.51	0.012027
ORF1ab/nsp3	1527	A1527T	Gca	Aca	5	7	B.1.617.2	0.000019
ORF1ab/nsp3	1527	A1527T	GcA	AcT	1	7	B.1.617.2	0.000004
ORF1ab/nsp3	1527	A1527T	GcA	AcC	1	7	B.1.617.2	0.000004
ORF1ab/nsp3	1527	A1527V	gCa	gTa	7	7	C.37	0.000812
ORF1ab/nsp3	1527	A1527del	GCA	---	6	6		0.333333
ORF1ab/nsp3	1527	A1527V	gCa	gTa	6	6	AY.75	0.000336
ORF1ab/nsp3	1527	A1527del	GCA	---	6	6	B.1.1	0.000109
ORF1ab/nsp3	1527	A1527V	gCa	gTa	6	6	B.1.1.192	0.013857
ORF1ab/nsp3	1527	A1527V	gCa	gTa	6	6	B.1.596	0.000523
ORF1ab/nsp3	1527	A1527V	gCa	gTa	6	6	C.26	0.044118
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	AY.111	0.000916
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	AY.14	0.00044
ORF1ab/nsp3	1527	A1527S	Gca	Tca	5	5	AY.25	0.00003
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	AY.29.1	0.001103
ORF1ab/nsp3	1527	A1527T	Gca	Aca	5	5	AY.3	0.00005
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	AY.42	0.000201
ORF1ab/nsp3	1527	A1527T	Gca	Aca	5	5	AY.43	0.000022
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	AY.91	0.003652
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	AY.98.1	0.000242
ORF1ab/nsp3	1527	A1527del	GCA	---	5	5	B.1	0.000046
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	B.1.160	0.000156
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	B.1.351.3	0.004382
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	B.1.36.29	0.002587
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	B.1.9.5	0.028409
ORF1ab/nsp3	1527	A1527V	gCa	gTa	5	5	P.2	0.000933
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	A.2.5	0.001996
ORF1ab/nsp3	1527	A1527X	GCa	TGa	3	4	All	0.000001
ORF1ab/nsp3	1527	A1527X	GCA	TAG	1	4	All	0
ORF1ab/nsp3	1527	A1527del	GCA	---	4	4	AY.25	0.000024
ORF1ab/nsp3	1527	A1527A	gcA	gcG	2	4	AY.25	0.000012
ORF1ab/nsp3	1527	A1527A	gcA	gcT	2	4	AY.25	0.000012
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	AY.33	0.000267
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	AY.39.1	0.000158
ORF1ab/nsp3	1527	A1527A	gcA	gcG	4	4	AY.59	0.002119
ORF1ab/nsp3	1527	A1527S	Gca	Tca	4	4	AY.75	0.000224
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	AY.9.1	0.000335
ORF1ab/nsp3	1527	A1527S	GcA	TcT	1	4	B.1	0.000009
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	4	B.1	0.000009
ORF1ab/nsp3	1527	A1527S	GcA	TcC	1	4	B.1	0.000009
ORF1ab/nsp3	1527	A1527S	GcA	TcG	1	4	B.1	0.000009
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	B.1.1.28	0.001245
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	B.1.1.305	0.015444
ORF1ab/nsp3	1527	A1527P	Gca	Cca	4	4	B.1.1.434	0.001394
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	B.1.1.50	0.002716
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	B.1.177.8	0.00301
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	B.1.229	0.038835
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	B.1.416	0.005076
ORF1ab/nsp3	1527	A1527A	gcA	gcT	3	4	P.1	0.000047
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	4	P.1	0.000016
ORF1ab/nsp3	1527	A1527V	gCa	gTa	4	4	P.1.1	0.001271
ORF1ab/nsp3	1527	A1527A	gcA	gcG	4	4	Q.7	0.004444
ORF1ab/nsp3	1527	A1527G	gCa	gGa	2	3		0.111111
ORF1ab/nsp3	1527	A1527S	Gca	Tca	2	3		0.111111
ORF1ab/nsp3	1527	A1527S	GcA	TcC	1	3		0.055556
ORF1ab/nsp3	1527	A1527G	gCA	gGC	1	3		0.055556
ORF1ab/nsp3	1527	A1527del2	gCA	g--	3	3	All	0.000001
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	AY.105	0.001929
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	3	AY.3	0.00001
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	3	AY.3	0.00001
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	3	AY.3	0.00001
ORF1ab/nsp3	1527	A1527A	gcA	gcT	3	3	AY.3.1	0.000256
ORF1ab/nsp3	1527	A1527A	gcA	gcG	3	3	AY.39.1	0.000119
ORF1ab/nsp3	1527	A1527del	GCA	---	3	3	AY.4	0.000005
ORF1ab/nsp3	1527	A1527del	GCA	---	3	3	AY.42	0.000121
ORF1ab/nsp3	1527	A1527S	Gca	Tca	3	3	AY.43	0.000013
ORF1ab/nsp3	1527	A1527del	GCA	---	3	3	AY.44	0.000018
ORF1ab/nsp3	1527	A1527E	gCa	gAa	3	3	B.1	0.000027
ORF1ab/nsp3	1527	A1527A	gcA	gcG	2	3	B.1	0.000018
ORF1ab/nsp3	1527	A1527G	gCa	gGa	2	3	B.1	0.000018
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	3	B.1	0.000009
ORF1ab/nsp3	1527	A1527G	gCA	gGC	1	3	B.1	0.000009
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	B.1.1.189	0.004539
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	B.1.1.348	0.002389
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	B.1.1.416	0.002715
ORF1ab/nsp3	1527	A1527T	Gca	Aca	3	3	B.1.1.7	0.000003
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	B.1.177.81	0.000568
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	B.1.214.2	0.001799
ORF1ab/nsp3	1527	A1527del	GCA	---	3	3	B.1.617.1	0.000387
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	B.1.617.1	0.000387
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	C.17	0.166667
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	C.36	0.002732
ORF1ab/nsp3	1527	A1527V	gCa	gTa	3	3	D.2	0.000225
ORF1ab/nsp3	1527	A1527X	GCa	TGa	2	2		0.111111
ORF1ab/nsp3	1527	A1527E	gCa	gAa	2	2	A.2.5	0.000998
ORF1ab/nsp3	1527	A1527C	GCA	TGC	2	2	All	0
ORF1ab/nsp3	1527	A1527K	GCa	AAa	2	2	All	0
ORF1ab/nsp3	1527	A1527R	GCa	AGa	1	2	All	0
ORF1ab/nsp3	1527	A1527R	GCA	CGG	1	2	All	0
ORF1ab/nsp3	1527	A1527T	Gca	Aca	2	2	AY.102	0.000053
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	2	AY.102	0.000027
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	2	AY.102	0.000027
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	AY.109	0.001479
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	AY.119	0.000071
ORF1ab/nsp3	1527	A1527del	GCA	---	2	2	AY.120.2	0.002571
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	AY.121	0.000271
ORF1ab/nsp3	1527	A1527A	gcA	gcG	2	2	AY.20	0.000078
ORF1ab/nsp3	1527	A1527T	Gca	Aca	2	2	AY.25	0.000012
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	2	AY.29	0.000016
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	2	AY.29	0.000016
ORF1ab/nsp3	1527	A1527S	Gca	Tca	2	2	AY.39	0.000049
ORF1ab/nsp3	1527	A1527T	Gca	Aca	2	2	AY.4.2	0.000043
ORF1ab/nsp3	1527	A1527A	gcA	gcG	2	2	AY.4.2	0.000043
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	2	AY.43	0.000004
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	2	AY.43	0.000004
ORF1ab/nsp3	1527	A1527del	GCA	---	2	2	AY.46.6	0.000144
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	AY.54	0.000191
ORF1ab/nsp3	1527	A1527S	Gca	Tca	2	2	AY.54	0.000191
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	AY.7	0.000392
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	AY.98	0.000158
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	AY.99.2	0.000184
ORF1ab/nsp3	1527	A1527T	Gca	Aca	2	2	B.1	0.000018
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	2	2	B.1	0.000018
ORF1ab/nsp3	1527	A1527P	GcA	CcT	1	2	B.1	0.000009
ORF1ab/nsp3	1527	A1527X	GCA	TAG	1	2	B.1	0.000009
ORF1ab/nsp3	1527	A1527X	GCa	TGa	1	2	B.1	0.000009
ORF1ab/nsp3	1527	A1527P	GcA	CcG	1	2	B.1	0.000009
ORF1ab/nsp3	1527	A1527E	gCa	gAa	2	2	B.1.1	0.000036
ORF1ab/nsp3	1527	A1527S	Gca	Tca	2	2	B.1.1	0.000036
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	2	B.1.1	0.000018
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	2	B.1.1	0.000018
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.1.1	0.000653
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.1.269	0.002706
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.1.284	0.000215
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.1.317	0.000823
ORF1ab/nsp3	1527	A1527A	gcA	gcT	2	2	B.1.1.39	0.001019
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.1.54	0.006042
ORF1ab/nsp3	1527	A1527T	Gca	Aca	2	2	B.1.177	0.000026
ORF1ab/nsp3	1527	A1527del	GCA	---	2	2	B.1.177	0.000026
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.177.21	0.000153
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.177.80	0.003824
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.177.87	0.001456
ORF1ab/nsp3	1527	A1527A	gcA	gcG	2	2	B.1.2	0.000018
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.258	0.000133
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.258.17	0.000208
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.311	0.000549
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.351.5	0.001199
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.36	0.000292
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.36.36	0.001204
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.36.8	0.002
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.369	0.00057
ORF1ab/nsp3	1527	A1527P	Gca	Cca	2	2	B.1.409	0.001563
ORF1ab/nsp3	1527	A1527del	GCA	---	2	2	B.1.411	0.007407
ORF1ab/nsp3	1527	A1527A	gcA	gcG	2	2	B.1.433	0.00639
ORF1ab/nsp3	1527	A1527del	GCA	---	2	2	B.1.497	0.00063
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.524	0.002813
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.575	0.000607
ORF1ab/nsp3	1527	A1527S	Gca	Tca	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	1527	A1527A	gcA	gcG	2	2	B.1.621	0.000177
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	2	2	B.1.627	0.00404
ORF1ab/nsp3	1527	A1527A	gcA	gcG	2	2	B.1.637	0.000146
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	B.1.637	0.000146
ORF1ab/nsp3	1527	A1527G	gCa	gGa	1	2	K.1	0.02381
ORF1ab/nsp3	1527	A1527G	gCA	gGC	1	2	K.1	0.02381
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	N.9	0.011905
ORF1ab/nsp3	1527	A1527S	Gca	Tca	2	2	P.1	0.000032
ORF1ab/nsp3	1527	A1527S	Gca	Tca	2	2	P.1.10	0.000539
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	P.1.17	0.000324
ORF1ab/nsp3	1527	A1527V	gCa	gTa	2	2	Q.3	0.00029
ORF1ab/nsp3	1527	A1527I	GCa	ATa	1	1		0.055556
ORF1ab/nsp3	1527	A1527L	GCa	TTa	1	1		0.055556
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	1		0.055556
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1		0.055556
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1		0.055556
ORF1ab/nsp3	1527	A1527C	GCA	TGC	1	1		0.055556
ORF1ab/nsp3	1527	A1527R	GCa	AGa	1	1		0.055556
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	A.2.4	0.003367
ORF1ab/nsp3	1527	A1527E	gCa	gAa	1	1	A.2.4	0.003367
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	A.23.1	0.000704
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	A.27	0.001656
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	A.28	0.002646
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AD.2	0.000219
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AD.2	0.000219
ORF1ab/nsp3	1527	A1527H	GCA	CAT	1	1	All	0
ORF1ab/nsp3	1527	A1527Q	GCA	CAG	1	1	All	0
ORF1ab/nsp3	1527	A1527Y	GCA	TAT	1	1	All	0
ORF1ab/nsp3	1527	A1527L	GCa	TTa	1	1	All	0
ORF1ab/nsp3	1527	A1527I	GCa	ATa	1	1	All	0
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AU.2	0.002421
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AU.3	0.00211
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AW.1	0.003049
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.101	0.00049
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	AY.102	0.000027
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	AY.103	0.000006
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.103	0.000006
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.106	0.000335
ORF1ab/nsp3	1527	A1527G	gCa	gGa	1	1	AY.107	0.000466
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.108	0.001103
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	AY.109	0.00074
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	AY.111	0.000183
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	AY.113	0.000142
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	AY.116.1	0.000311
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	AY.116.1	0.000311
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.117	0.000085
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	1	AY.118	0.000063
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	AY.120	0.000037
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.120	0.000037
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	AY.13	0.000161
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.16	0.00038
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.2	0.000356
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	AY.23	0.00007
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.23.1	0.000417
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	AY.25	0.000006
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	AY.26	0.000028
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	AY.26	0.000028
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.27	0.000065
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.3	0.00001
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.32	0.000532
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.33	0.000067
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	AY.33	0.000067
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	1	AY.33	0.000067
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.34.1	0.00051
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	AY.35	0.000233
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.36	0.000148
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	AY.4	0.000002
ORF1ab/nsp3	1527	A1527E	gCa	gAa	1	1	AY.4	0.000002
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	AY.4.2	0.000022
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.4.3	0.000842
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1527	A1527E	gCa	gAa	1	1	AY.44	0.000006
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	AY.44	0.000006
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	AY.46	0.000104
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.46	0.000104
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	AY.5	0.000021
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.5	0.000021
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.5.4	0.000277
ORF1ab/nsp3	1527	A1527G	gCa	gGa	1	1	AY.59	0.00053
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.59	0.00053
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.62	0.000436
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.65	0.000533
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.66	0.00107
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.67	0.000464
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.68	0.000274
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.69	0.000187
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	1	AY.7.1	0.000113
ORF1ab/nsp3	1527	A1527E	gCa	gAa	1	1	AY.71	0.000475
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.74	0.000116
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.75	0.000056
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	AY.75	0.000056
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.76	0.004831
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	AY.81	0.001992
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	1	AY.84	0.000437
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.84	0.000437
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.9	0.000068
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.9	0.000068
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1527	A1527del2	gCA	g--	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	AY.90	0.000684
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	AY.94	0.000443
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	B	0.000128
ORF1ab/nsp3	1527	A1527Q	GCA	CAG	1	1	B.1	0.000009
ORF1ab/nsp3	1527	A1527Y	GCA	TAT	1	1	B.1	0.000009
ORF1ab/nsp3	1527	A1527H	GCA	CAT	1	1	B.1	0.000009
ORF1ab/nsp3	1527	A1527C	GCA	TGC	1	1	B.1	0.000009
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.1	0.000018
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.10	0.001115
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	B.1.1.139	0.022727
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.1.159	0.004673
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.190	0.05
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.220	0.001859
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.1.221	0.010101
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.222	0.000204
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.254	0.011236
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	B.1.1.28	0.000311
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.33	0.000421
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.1.354	0.004386
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	B.1.1.39	0.00051
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.407	0.041667
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.412	0.007634
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.432	0.001266
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.440	0.011765
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.448	0.002033
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.1.467	0.019231
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.486	0.001577
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	B.1.1.507	0.008696
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.56	0.017857
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	B.1.1.61	0.008772
ORF1ab/nsp3	1527	A1527del2	gCA	g--	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.115	0.021739
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.140	0.018868
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	1	B.1.160	0.000031
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.160	0.000031
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	B.1.161	0.017241
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	B.1.162	0.005025
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.170	0.00431
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	B.1.177	0.000013
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.177.10	0.000878
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.177.15	0.000631
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.177.2	0.004545
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.177.20	0.001517
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.177.33	0.001645
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.177.44	0.000519
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.177.53	0.002392
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.177.62	0.001192
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	B.1.177.69	0.001484
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.177.77	0.000726
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.177.79	0.002342
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	B.1.199	0.004132
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.2	0.000009
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	B.1.2	0.000009
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.210	0.002132
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.214	0.003663
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.232	0.000537
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	1	B.1.234	0.000132
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.234	0.000132
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.236	0.002053
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.239	0.001221
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.240	0.000216
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.243	0.00007
ORF1ab/nsp3	1527	A1527del2	gCA	g--	1	1	B.1.258	0.000067
ORF1ab/nsp3	1527	A1527K	GCa	AAa	1	1	B.1.258	0.000067
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.258	0.000067
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.281	0.021739
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.349	0.000715
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.351	0.00003
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	B.1.36.35	0.002604
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.375	0.00082
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	B.1.400	0.000429
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.415	0.014286
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.426	0.001009
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.428	0.00102
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	B.1.429	0.000024
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.453	0.003236
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.456	0.003268
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.466.2	0.000391
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.499	0.00105
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.525	0.000113
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	B.1.525	0.000113
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.526	0.000024
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	1	B.1.526	0.000024
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	B.1.565	0.00081
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.565	0.00081
ORF1ab/nsp3	1527	A1527S	Gca	Tca	1	1	B.1.568	0.001111
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.575	0.000303
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.575.1	0.002439
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.585	0.027778
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.588.1	0.038462
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.595	0.000261
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.595	0.000261
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	B.1.596	0.000087
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	B.1.604	0.017241
ORF1ab/nsp3	1527	A1527K	GCa	AAa	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1527	A1527R	GCA	CGG	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1527	A1527G	gCa	gGa	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	B.1.621	0.000089
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.621	0.000089
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	B.1.628	0.000352
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.1.636	0.006711
ORF1ab/nsp3	1527	A1527P	Gca	Cca	1	1	B.1.637	0.000073
ORF1ab/nsp3	1527	A1527E	gCa	gAa	1	1	B.1.8	0.001972
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.29	0.003509
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.3	0.000831
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.4	0.002208
ORF1ab/nsp3	1527	A1527G	gCA	gGT	1	1	B.4.4	0.018868
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.6	0.00091
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	B.6.6	0.000889
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	C.16	0.00106
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	C.35	0.000774
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	C.35	0.000774
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	C.37	0.000116
ORF1ab/nsp3	1527	A1527A	gcA	gcT	1	1	D.2	0.000075
ORF1ab/nsp3	1527	A1527A	gcA	gcC	1	1	K.1	0.02381
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	P.1	0.000016
ORF1ab/nsp3	1527	A1527del1	Gca	-ca	1	1	P.1	0.000016
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	P.1.1	0.000318
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	P.1.12	0.000484
ORF1ab/nsp3	1527	A1527T	Gca	Aca	1	1	P.1.14	0.000048
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	P.1.15	0.000232
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	P.1.15	0.000232
ORF1ab/nsp3	1527	A1527E	gCa	gAa	1	1	P.1.17	0.000162
ORF1ab/nsp3	1527	A1527del1	gcA	gc-	1	1	Q.2	0.000613
ORF1ab/nsp3	1527	A1527V	gCa	gTa	1	1	Q.4	0.000455
ORF1ab/nsp3	1527	A1527del	GCA	---	1	1	Q.8	0.000165
ORF1ab/nsp3	1527	A1527A	gcA	gcG	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.