CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1527

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31527A1527VA2345VnonsyngCagTa20223202220.9999517298-7300
ORF1ab/nsp31527A1527VA2345VnonsyngCAgTG2022310.00004944867298-7300
ORF1ab/nsp31527A1527AA2345AsyngcAgcG2051240.6048787298-7300
ORF1ab/nsp31527A1527AA2345AsyngcAgcT205690.3365857298-7300
ORF1ab/nsp31527A1527AA2345AsyngcAgcC205120.05853667298-7300
ORF1ab/nsp31527A1527delA2345deldelGCA---14014017298-7300
ORF1ab/nsp31527A1527SA2345SnonsynGcaTca1241200.9677427298-7300
ORF1ab/nsp31527A1527SA2345SnonsynGcATcC12420.0161297298-7300
ORF1ab/nsp31527A1527SA2345SnonsynGcATcG12410.008064527298-7300
ORF1ab/nsp31527A1527SA2345SnonsynGcATcT12410.008064527298-7300
ORF1ab/nsp31527A1527TA2345TnonsynGcaAca1221200.9836077298-7300
ORF1ab/nsp31527A1527TA2345TnonsynGcAAcT12210.008196727298-7300
ORF1ab/nsp31527A1527TA2345TnonsynGcAAcC12210.008196727298-7300
ORF1ab/nsp31527A1527PA2345PnonsynGcaCca20180.97298-7300
ORF1ab/nsp31527A1527PA2345PnonsynGcACcT2010.057298-7300
ORF1ab/nsp31527A1527PA2345PnonsynGcACcG2010.057298-7300
ORF1ab/nsp31527A1527del1A2345del1delgcAgc-15140.9333337298-7300
ORF1ab/nsp31527A1527del1A2345del1delGca-ca1510.06666677298-7300
ORF1ab/nsp31527A1527EA2345EnonsyngCagAa131317298-7300
ORF1ab/nsp31527A1527GA2345GnonsyngCagGa1280.6666677298-7300
ORF1ab/nsp31527A1527GA2345GnonsyngCAgGC1230.257298-7300
ORF1ab/nsp31527A1527GA2345GnonsyngCAgGT1210.08333337298-7300
ORF1ab/nsp31527A1527XA2345XnonsynGCaTGa430.757298-7300
ORF1ab/nsp31527A1527XA2345XnonsynGCATAG410.257298-7300
ORF1ab/nsp31527A1527del2A2345del2delgCAg--3317298-7300
ORF1ab/nsp31527A1527CA2345CnonsynGCATGC2217298-7300
ORF1ab/nsp31527A1527KA2345KnonsynGCaAAa2217298-7300
ORF1ab/nsp31527A1527RA2345RnonsynGCaAGa210.57298-7300
ORF1ab/nsp31527A1527RA2345RnonsynGCACGG210.57298-7300
ORF1ab/nsp31527A1527HA2345HnonsynGCACAT1117298-7300
ORF1ab/nsp31527A1527YA2345YnonsynGCATAT1117298-7300
ORF1ab/nsp31527A1527QA2345QnonsynGCACAG1117298-7300
ORF1ab/nsp31527A1527IA2345InonsynGCaATa1117298-7300
ORF1ab/nsp31527A1527LA2345LnonsynGCaTTa1117298-7300

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31527A1527VgCagTa2022220223All0.003868
ORF1ab/nsp31527A1527VgCAgTG120223All0
ORF1ab/nsp31527A1527VgCagTa1580315803B.1.1.70.014147
ORF1ab/nsp31527A1527VgCagTa10141014B.1.1.5190.040267
ORF1ab/nsp31527A1527VgCagTa320320Q.80.05277
ORF1ab/nsp31527A1527VgCagTa262262AY.30.002606
ORF1ab/nsp31527A1527AgcAgcG124205All0.000024
ORF1ab/nsp31527A1527AgcAgcT69205All0.000013
ORF1ab/nsp31527A1527AgcAgcC12205All0.000002
ORF1ab/nsp31527A1527VgCagTa167167AY.4.20.003622
ORF1ab/nsp31527A1527VgCagTa161161B.1.20.001418
ORF1ab/nsp31527A1527VgCagTa158158AY.290.002492
ORF1ab/nsp31527A1527VgCagTa156156B.1.3510.004637
ORF1ab/nsp31527A1527VgCagTa155155B.1.10.002812
ORF1ab/nsp31527A1527delGCA---140140All0.000027
ORF1ab/nsp31527A1527VgCagTa138138AY.40.000215
ORF1ab/nsp31527A1527VgCagTa125125B.1.617.20.000471
ORF1ab/nsp31527A1527SGcaTca120124All0.000023
ORF1ab/nsp31527A1527SGcATcC2124All0
ORF1ab/nsp31527A1527SGcATcG1124All0
ORF1ab/nsp31527A1527SGcATcT1124All0
ORF1ab/nsp31527A1527TGcaAca120122All0.000023
ORF1ab/nsp31527A1527TGcAAcT1122All0
ORF1ab/nsp31527A1527TGcAAcC1122All0
ORF1ab/nsp31527A1527VgCagTa113114B.10.001035
ORF1ab/nsp31527A1527VgCAgTG1114B.10.000009
ORF1ab/nsp31527A1527VgCagTa102102AY.440.000621
ORF1ab/nsp31527A1527VgCagTa101101B.1.1.250.057419
ORF1ab/nsp31527A1527VgCagTa8383AY.1030.000515
ORF1ab/nsp31527A1527VgCagTa6969P.10.001087
ORF1ab/nsp31527A1527VgCagTa6868AY.430.000301
ORF1ab/nsp31527A1527VgCagTa6666AY.60.002714
ORF1ab/nsp31527A1527VgCagTa6666B.1.6100.234043
ORF1ab/nsp31527A1527VgCagTa6363B.1.1770.00083
ORF1ab/nsp31527A1527VgCagTa5353AA.60.854839
ORF1ab/nsp31527A1527VgCagTa5151B.1.5950.013309
ORF1ab/nsp31527A1527VgCagTa4545AY.260.001274
ORF1ab/nsp31527A1527AgcAgcG3142B.1.617.20.000117
ORF1ab/nsp31527A1527AgcAgcT1142B.1.617.20.000041
ORF1ab/nsp31527A1527VgCagTa4141AY.1180.002569
ORF1ab/nsp31527A1527SGcaTca4040AY.98.10.001937
ORF1ab/nsp31527A1527VgCagTa4040B.1.438.10.00429
ORF1ab/nsp31527A1527VgCagTa3434B.1.1.4640.050074
ORF1ab/nsp31527A1527VgCagTa3232AY.250.000192
ORF1ab/nsp31527A1527VgCagTa3131B.1.1.2650.097792
ORF1ab/nsp31527A1527VgCagTa3131B.1.4290.000729
ORF1ab/nsp31527A1527TGcaAca3030AY.40.000047
ORF1ab/nsp31527A1527VgCagTa3030B.1.5250.003395
ORF1ab/nsp31527A1527AgcAgcT2429AY.40.000037
ORF1ab/nsp31527A1527AgcAgcG429AY.40.000006
ORF1ab/nsp31527A1527AgcAgcC129AY.40.000002
ORF1ab/nsp31527A1527delGCA---2929B.1.1.70.000026
ORF1ab/nsp31527A1527TGcaAca2929B.1.2340.003826
ORF1ab/nsp31527A1527VgCagTa2828AY.390.000692
ORF1ab/nsp31527A1527VgCagTa2727Q.10.003411
ORF1ab/nsp31527A1527VgCagTa2626B.1.2430.001809
ORF1ab/nsp31527A1527AgcAgcG1821AY.440.00011
ORF1ab/nsp31527A1527AgcAgcT321AY.440.000018
ORF1ab/nsp31527A1527VgCagTa2121B.1.6090.010067
ORF1ab/nsp31527A1527PGcaCca1820All0.000003
ORF1ab/nsp31527A1527PGcACcG120All0
ORF1ab/nsp31527A1527PGcACcT120All0
ORF1ab/nsp31527A1527VgCagTa1919AY.470.000591
ORF1ab/nsp31527A1527VgCagTa1919AY.7.10.002141
ORF1ab/nsp31527A1527VgCagTa1616AY.1160.004588
ORF1ab/nsp31527A1527SGcaTca1616AY.40.000025
ORF1ab/nsp31527A1527del1gcAgc-1415All0.000003
ORF1ab/nsp31527A1527del1Gca-ca115All0
ORF1ab/nsp31527A1527TGcaAca1414B.1.20.000123
ORF1ab/nsp31527A1527EgCagAa1313All0.000002
ORF1ab/nsp31527A1527VgCagTa1313AY.1020.000345
ORF1ab/nsp31527A1527AgcAgcG1313AY.1030.000081
ORF1ab/nsp31527A1527delGCA---1313AY.430.000058
ORF1ab/nsp31527A1527SGcaTca1313B.1.1.70.000012
ORF1ab/nsp31527A1527GgCagGa812All0.000002
ORF1ab/nsp31527A1527GgCAgGC312All0.000001
ORF1ab/nsp31527A1527GgCAgGT112All0
ORF1ab/nsp31527A1527VgCagTa1212AY.200.000466
ORF1ab/nsp31527A1527SGcaTca1212B.1.20.000106
ORF1ab/nsp31527A1527VgCagTa1111B.1.1.2940.013924
ORF1ab/nsp31527A1527VgCagTa1111B.1.4270.000555
ORF1ab/nsp31527A1527AgcAgcG610B.1.1.70.000005
ORF1ab/nsp31527A1527AgcAgcC210B.1.1.70.000002
ORF1ab/nsp31527A1527AgcAgcT210B.1.1.70.000002
ORF1ab/nsp31527A1527VgCagTa1010B.1.177.600.002184
ORF1ab/nsp31527A1527VgCagTa1010B.1.2210.00071
ORF1ab/nsp31527A1527delGCA---1010B.1.617.20.000038
ORF1ab/nsp31527A1527VgCagTa1010R.10.0009
ORF1ab/nsp31527A1527VgCagTa99AY.1000.000414
ORF1ab/nsp31527A1527VgCagTa99AY.450.001095
ORF1ab/nsp31527A1527VgCagTa99B.1.1.630.003472
ORF1ab/nsp31527A1527AgcAgcG99B.1.2430.000626
ORF1ab/nsp31527A1527VgCagTa99B.1.4740.01711
ORF1ab/nsp31527A1527VgCagTa99B.1.5260.000212
ORF1ab/nsp31527A1527AgcAgcT88AY.1000.000368
ORF1ab/nsp31527A1527VgCagTa88AY.1200.000297
ORF1ab/nsp31527A1527VgCagTa88B.1.177.120.001214
ORF1ab/nsp31527A1527VgCagTa88B.1.6141
ORF1ab/nsp31527A1527VgCagTa88P.1.140.000382
ORF1ab/nsp31527A1527VgCagTa77AY.360.001037
ORF1ab/nsp31527A1527VgCagTa77AY.50.000145
ORF1ab/nsp31527A1527VgCagTa77AY.930.001912
ORF1ab/nsp31527A1527VgCagTa77B.1.1.2160.006233
ORF1ab/nsp31527A1527VgCagTa77B.1.1.510.012027
ORF1ab/nsp31527A1527TGcaAca57B.1.617.20.000019
ORF1ab/nsp31527A1527TGcAAcT17B.1.617.20.000004
ORF1ab/nsp31527A1527TGcAAcC17B.1.617.20.000004
ORF1ab/nsp31527A1527VgCagTa77C.370.000812
ORF1ab/nsp31527A1527delGCA---660.333333
ORF1ab/nsp31527A1527VgCagTa66AY.750.000336
ORF1ab/nsp31527A1527delGCA---66B.1.10.000109
ORF1ab/nsp31527A1527VgCagTa66B.1.1.1920.013857
ORF1ab/nsp31527A1527VgCagTa66B.1.5960.000523
ORF1ab/nsp31527A1527VgCagTa66C.260.044118
ORF1ab/nsp31527A1527VgCagTa55AY.1110.000916
ORF1ab/nsp31527A1527VgCagTa55AY.140.00044
ORF1ab/nsp31527A1527SGcaTca55AY.250.00003
ORF1ab/nsp31527A1527VgCagTa55AY.29.10.001103
ORF1ab/nsp31527A1527TGcaAca55AY.30.00005
ORF1ab/nsp31527A1527VgCagTa55AY.420.000201
ORF1ab/nsp31527A1527TGcaAca55AY.430.000022
ORF1ab/nsp31527A1527VgCagTa55AY.910.003652
ORF1ab/nsp31527A1527VgCagTa55AY.98.10.000242
ORF1ab/nsp31527A1527delGCA---55B.10.000046
ORF1ab/nsp31527A1527VgCagTa55B.1.1600.000156
ORF1ab/nsp31527A1527VgCagTa55B.1.351.30.004382
ORF1ab/nsp31527A1527VgCagTa55B.1.36.290.002587
ORF1ab/nsp31527A1527VgCagTa55B.1.9.50.028409
ORF1ab/nsp31527A1527VgCagTa55P.20.000933
ORF1ab/nsp31527A1527VgCagTa44A.2.50.001996
ORF1ab/nsp31527A1527XGCaTGa34All0.000001
ORF1ab/nsp31527A1527XGCATAG14All0
ORF1ab/nsp31527A1527delGCA---44AY.250.000024
ORF1ab/nsp31527A1527AgcAgcG24AY.250.000012
ORF1ab/nsp31527A1527AgcAgcT24AY.250.000012
ORF1ab/nsp31527A1527VgCagTa44AY.330.000267
ORF1ab/nsp31527A1527VgCagTa44AY.39.10.000158
ORF1ab/nsp31527A1527AgcAgcG44AY.590.002119
ORF1ab/nsp31527A1527SGcaTca44AY.750.000224
ORF1ab/nsp31527A1527VgCagTa44AY.9.10.000335
ORF1ab/nsp31527A1527SGcATcT14B.10.000009
ORF1ab/nsp31527A1527SGcaTca14B.10.000009
ORF1ab/nsp31527A1527SGcATcC14B.10.000009
ORF1ab/nsp31527A1527SGcATcG14B.10.000009
ORF1ab/nsp31527A1527VgCagTa44B.1.1.280.001245
ORF1ab/nsp31527A1527VgCagTa44B.1.1.3050.015444
ORF1ab/nsp31527A1527PGcaCca44B.1.1.4340.001394
ORF1ab/nsp31527A1527VgCagTa44B.1.1.500.002716
ORF1ab/nsp31527A1527VgCagTa44B.1.177.80.00301
ORF1ab/nsp31527A1527VgCagTa44B.1.2290.038835
ORF1ab/nsp31527A1527VgCagTa44B.1.4160.005076
ORF1ab/nsp31527A1527AgcAgcT34P.10.000047
ORF1ab/nsp31527A1527AgcAgcG14P.10.000016
ORF1ab/nsp31527A1527VgCagTa44P.1.10.001271
ORF1ab/nsp31527A1527AgcAgcG44Q.70.004444
ORF1ab/nsp31527A1527GgCagGa230.111111
ORF1ab/nsp31527A1527SGcaTca230.111111
ORF1ab/nsp31527A1527SGcATcC130.055556
ORF1ab/nsp31527A1527GgCAgGC130.055556
ORF1ab/nsp31527A1527del2gCAg--33All0.000001
ORF1ab/nsp31527A1527VgCagTa33AY.1050.001929
ORF1ab/nsp31527A1527AgcAgcC13AY.30.00001
ORF1ab/nsp31527A1527AgcAgcG13AY.30.00001
ORF1ab/nsp31527A1527AgcAgcT13AY.30.00001
ORF1ab/nsp31527A1527AgcAgcT33AY.3.10.000256
ORF1ab/nsp31527A1527AgcAgcG33AY.39.10.000119
ORF1ab/nsp31527A1527delGCA---33AY.40.000005
ORF1ab/nsp31527A1527delGCA---33AY.420.000121
ORF1ab/nsp31527A1527SGcaTca33AY.430.000013
ORF1ab/nsp31527A1527delGCA---33AY.440.000018
ORF1ab/nsp31527A1527EgCagAa33B.10.000027
ORF1ab/nsp31527A1527AgcAgcG23B.10.000018
ORF1ab/nsp31527A1527GgCagGa23B.10.000018
ORF1ab/nsp31527A1527AgcAgcC13B.10.000009
ORF1ab/nsp31527A1527GgCAgGC13B.10.000009
ORF1ab/nsp31527A1527VgCagTa33B.1.1.1890.004539
ORF1ab/nsp31527A1527VgCagTa33B.1.1.3480.002389
ORF1ab/nsp31527A1527VgCagTa33B.1.1.4160.002715
ORF1ab/nsp31527A1527TGcaAca33B.1.1.70.000003
ORF1ab/nsp31527A1527VgCagTa33B.1.177.810.000568
ORF1ab/nsp31527A1527VgCagTa33B.1.214.20.001799
ORF1ab/nsp31527A1527delGCA---33B.1.617.10.000387
ORF1ab/nsp31527A1527VgCagTa33B.1.617.10.000387
ORF1ab/nsp31527A1527VgCagTa33C.170.166667
ORF1ab/nsp31527A1527VgCagTa33C.360.002732
ORF1ab/nsp31527A1527VgCagTa33D.20.000225
ORF1ab/nsp31527A1527XGCaTGa220.111111
ORF1ab/nsp31527A1527EgCagAa22A.2.50.000998
ORF1ab/nsp31527A1527CGCATGC22All0
ORF1ab/nsp31527A1527KGCaAAa22All0
ORF1ab/nsp31527A1527RGCaAGa12All0
ORF1ab/nsp31527A1527RGCACGG12All0
ORF1ab/nsp31527A1527TGcaAca22AY.1020.000053
ORF1ab/nsp31527A1527AgcAgcT12AY.1020.000027
ORF1ab/nsp31527A1527AgcAgcC12AY.1020.000027
ORF1ab/nsp31527A1527VgCagTa22AY.1090.001479
ORF1ab/nsp31527A1527VgCagTa22AY.1190.000071
ORF1ab/nsp31527A1527delGCA---22AY.120.20.002571
ORF1ab/nsp31527A1527VgCagTa22AY.1210.000271
ORF1ab/nsp31527A1527AgcAgcG22AY.200.000078
ORF1ab/nsp31527A1527TGcaAca22AY.250.000012
ORF1ab/nsp31527A1527AgcAgcC12AY.290.000016
ORF1ab/nsp31527A1527AgcAgcG12AY.290.000016
ORF1ab/nsp31527A1527SGcaTca22AY.390.000049
ORF1ab/nsp31527A1527TGcaAca22AY.4.20.000043
ORF1ab/nsp31527A1527AgcAgcG22AY.4.20.000043
ORF1ab/nsp31527A1527AgcAgcT12AY.430.000004
ORF1ab/nsp31527A1527AgcAgcG12AY.430.000004
ORF1ab/nsp31527A1527delGCA---22AY.46.60.000144
ORF1ab/nsp31527A1527VgCagTa22AY.540.000191
ORF1ab/nsp31527A1527SGcaTca22AY.540.000191
ORF1ab/nsp31527A1527VgCagTa22AY.70.000392
ORF1ab/nsp31527A1527VgCagTa22AY.980.000158
ORF1ab/nsp31527A1527VgCagTa22AY.99.20.000184
ORF1ab/nsp31527A1527TGcaAca22B.10.000018
ORF1ab/nsp31527A1527del1gcAgc-22B.10.000018
ORF1ab/nsp31527A1527PGcACcT12B.10.000009
ORF1ab/nsp31527A1527XGCATAG12B.10.000009
ORF1ab/nsp31527A1527XGCaTGa12B.10.000009
ORF1ab/nsp31527A1527PGcACcG12B.10.000009
ORF1ab/nsp31527A1527EgCagAa22B.1.10.000036
ORF1ab/nsp31527A1527SGcaTca22B.1.10.000036
ORF1ab/nsp31527A1527AgcAgcG12B.1.10.000018
ORF1ab/nsp31527A1527AgcAgcC12B.1.10.000018
ORF1ab/nsp31527A1527VgCagTa22B.1.1.10.000653
ORF1ab/nsp31527A1527VgCagTa22B.1.1.2690.002706
ORF1ab/nsp31527A1527VgCagTa22B.1.1.2840.000215
ORF1ab/nsp31527A1527VgCagTa22B.1.1.3170.000823
ORF1ab/nsp31527A1527AgcAgcT22B.1.1.390.001019
ORF1ab/nsp31527A1527VgCagTa22B.1.1.540.006042
ORF1ab/nsp31527A1527TGcaAca22B.1.1770.000026
ORF1ab/nsp31527A1527delGCA---22B.1.1770.000026
ORF1ab/nsp31527A1527VgCagTa22B.1.177.210.000153
ORF1ab/nsp31527A1527VgCagTa22B.1.177.800.003824
ORF1ab/nsp31527A1527VgCagTa22B.1.177.870.001456
ORF1ab/nsp31527A1527AgcAgcG22B.1.20.000018
ORF1ab/nsp31527A1527VgCagTa22B.1.2580.000133
ORF1ab/nsp31527A1527VgCagTa22B.1.258.170.000208
ORF1ab/nsp31527A1527VgCagTa22B.1.3110.000549
ORF1ab/nsp31527A1527VgCagTa22B.1.351.50.001199
ORF1ab/nsp31527A1527VgCagTa22B.1.360.000292
ORF1ab/nsp31527A1527VgCagTa22B.1.36.360.001204
ORF1ab/nsp31527A1527VgCagTa22B.1.36.80.002
ORF1ab/nsp31527A1527VgCagTa22B.1.3690.00057
ORF1ab/nsp31527A1527PGcaCca22B.1.4090.001563
ORF1ab/nsp31527A1527delGCA---22B.1.4110.007407
ORF1ab/nsp31527A1527AgcAgcG22B.1.4330.00639
ORF1ab/nsp31527A1527delGCA---22B.1.4970.00063
ORF1ab/nsp31527A1527VgCagTa22B.1.5240.002813
ORF1ab/nsp31527A1527VgCagTa22B.1.5750.000607
ORF1ab/nsp31527A1527SGcaTca22B.1.617.20.000008
ORF1ab/nsp31527A1527AgcAgcG22B.1.6210.000177
ORF1ab/nsp31527A1527del1gcAgc-22B.1.6270.00404
ORF1ab/nsp31527A1527AgcAgcG22B.1.6370.000146
ORF1ab/nsp31527A1527VgCagTa22B.1.6370.000146
ORF1ab/nsp31527A1527GgCagGa12K.10.02381
ORF1ab/nsp31527A1527GgCAgGC12K.10.02381
ORF1ab/nsp31527A1527VgCagTa22N.90.011905
ORF1ab/nsp31527A1527SGcaTca22P.10.000032
ORF1ab/nsp31527A1527SGcaTca22P.1.100.000539
ORF1ab/nsp31527A1527VgCagTa22P.1.170.000324
ORF1ab/nsp31527A1527VgCagTa22Q.30.00029
ORF1ab/nsp31527A1527IGCaATa110.055556
ORF1ab/nsp31527A1527LGCaTTa110.055556
ORF1ab/nsp31527A1527AgcAgcC110.055556
ORF1ab/nsp31527A1527VgCagTa110.055556
ORF1ab/nsp31527A1527TGcaAca110.055556
ORF1ab/nsp31527A1527CGCATGC110.055556
ORF1ab/nsp31527A1527RGCaAGa110.055556
ORF1ab/nsp31527A1527AgcAgcG11A.2.40.003367
ORF1ab/nsp31527A1527EgCagAa11A.2.40.003367
ORF1ab/nsp31527A1527VgCagTa11A.23.10.000704
ORF1ab/nsp31527A1527VgCagTa11A.270.001656
ORF1ab/nsp31527A1527delGCA---11A.280.002646
ORF1ab/nsp31527A1527delGCA---11AD.20.000219
ORF1ab/nsp31527A1527VgCagTa11AD.20.000219
ORF1ab/nsp31527A1527HGCACAT11All0
ORF1ab/nsp31527A1527QGCACAG11All0
ORF1ab/nsp31527A1527YGCATAT11All0
ORF1ab/nsp31527A1527LGCaTTa11All0
ORF1ab/nsp31527A1527IGCaATa11All0
ORF1ab/nsp31527A1527VgCagTa11AU.20.002421
ORF1ab/nsp31527A1527VgCagTa11AU.30.00211
ORF1ab/nsp31527A1527VgCagTa11AW.10.003049
ORF1ab/nsp31527A1527delGCA---11AY.1010.00049
ORF1ab/nsp31527A1527SGcaTca11AY.1020.000027
ORF1ab/nsp31527A1527TGcaAca11AY.1030.000006
ORF1ab/nsp31527A1527delGCA---11AY.1030.000006
ORF1ab/nsp31527A1527VgCagTa11AY.1060.000335
ORF1ab/nsp31527A1527GgCagGa11AY.1070.000466
ORF1ab/nsp31527A1527VgCagTa11AY.1080.001103
ORF1ab/nsp31527A1527TGcaAca11AY.1090.00074
ORF1ab/nsp31527A1527del1gcAgc-11AY.1110.000183
ORF1ab/nsp31527A1527del1gcAgc-11AY.1130.000142
ORF1ab/nsp31527A1527AgcAgcG11AY.116.10.000311
ORF1ab/nsp31527A1527TGcaAca11AY.116.10.000311
ORF1ab/nsp31527A1527VgCagTa11AY.1170.000085
ORF1ab/nsp31527A1527AgcAgcT11AY.1180.000063
ORF1ab/nsp31527A1527TGcaAca11AY.1200.000037
ORF1ab/nsp31527A1527delGCA---11AY.1200.000037
ORF1ab/nsp31527A1527SGcaTca11AY.130.000161
ORF1ab/nsp31527A1527VgCagTa11AY.160.00038
ORF1ab/nsp31527A1527VgCagTa11AY.20.000356
ORF1ab/nsp31527A1527AgcAgcG11AY.230.00007
ORF1ab/nsp31527A1527VgCagTa11AY.23.10.000417
ORF1ab/nsp31527A1527del1gcAgc-11AY.250.000006
ORF1ab/nsp31527A1527AgcAgcG11AY.260.000028
ORF1ab/nsp31527A1527SGcaTca11AY.260.000028
ORF1ab/nsp31527A1527VgCagTa11AY.270.000065
ORF1ab/nsp31527A1527delGCA---11AY.30.00001
ORF1ab/nsp31527A1527VgCagTa11AY.320.000532
ORF1ab/nsp31527A1527delGCA---11AY.330.000067
ORF1ab/nsp31527A1527TGcaAca11AY.330.000067
ORF1ab/nsp31527A1527AgcAgcT11AY.330.000067
ORF1ab/nsp31527A1527delGCA---11AY.34.10.00051
ORF1ab/nsp31527A1527AgcAgcG11AY.350.000233
ORF1ab/nsp31527A1527delGCA---11AY.360.000148
ORF1ab/nsp31527A1527PGcaCca11AY.40.000002
ORF1ab/nsp31527A1527EgCagAa11AY.40.000002
ORF1ab/nsp31527A1527SGcaTca11AY.4.20.000022
ORF1ab/nsp31527A1527delGCA---11AY.4.30.000842
ORF1ab/nsp31527A1527delGCA---11AY.4.50.000107
ORF1ab/nsp31527A1527VgCagTa11AY.4.50.000107
ORF1ab/nsp31527A1527EgCagAa11AY.440.000006
ORF1ab/nsp31527A1527TGcaAca11AY.440.000006
ORF1ab/nsp31527A1527TGcaAca11AY.460.000104
ORF1ab/nsp31527A1527VgCagTa11AY.460.000104
ORF1ab/nsp31527A1527AgcAgcG11AY.46.60.000072
ORF1ab/nsp31527A1527TGcaAca11AY.50.000021
ORF1ab/nsp31527A1527delGCA---11AY.50.000021
ORF1ab/nsp31527A1527VgCagTa11AY.5.40.000277
ORF1ab/nsp31527A1527GgCagGa11AY.590.00053
ORF1ab/nsp31527A1527VgCagTa11AY.590.00053
ORF1ab/nsp31527A1527VgCagTa11AY.620.000436
ORF1ab/nsp31527A1527VgCagTa11AY.650.000533
ORF1ab/nsp31527A1527delGCA---11AY.660.00107
ORF1ab/nsp31527A1527delGCA---11AY.670.000464
ORF1ab/nsp31527A1527VgCagTa11AY.680.000274
ORF1ab/nsp31527A1527VgCagTa11AY.690.000187
ORF1ab/nsp31527A1527AgcAgcT11AY.7.10.000113
ORF1ab/nsp31527A1527EgCagAa11AY.710.000475
ORF1ab/nsp31527A1527VgCagTa11AY.740.000116
ORF1ab/nsp31527A1527delGCA---11AY.750.000056
ORF1ab/nsp31527A1527PGcaCca11AY.750.000056
ORF1ab/nsp31527A1527delGCA---11AY.760.004831
ORF1ab/nsp31527A1527TGcaAca11AY.810.001992
ORF1ab/nsp31527A1527AgcAgcT11AY.840.000437
ORF1ab/nsp31527A1527delGCA---11AY.840.000437
ORF1ab/nsp31527A1527VgCagTa11AY.90.000068
ORF1ab/nsp31527A1527delGCA---11AY.90.000068
ORF1ab/nsp31527A1527delGCA---11AY.9.20.000037
ORF1ab/nsp31527A1527del2gCAg--11AY.9.20.000037
ORF1ab/nsp31527A1527AgcAgcT11AY.9.20.000037
ORF1ab/nsp31527A1527SGcaTca11AY.900.000684
ORF1ab/nsp31527A1527VgCagTa11AY.940.000443
ORF1ab/nsp31527A1527TGcaAca11B0.000128
ORF1ab/nsp31527A1527QGCACAG11B.10.000009
ORF1ab/nsp31527A1527YGCATAT11B.10.000009
ORF1ab/nsp31527A1527HGCACAT11B.10.000009
ORF1ab/nsp31527A1527CGCATGC11B.10.000009
ORF1ab/nsp31527A1527PGcaCca11B.1.10.000018
ORF1ab/nsp31527A1527VgCagTa11B.1.1.100.001115
ORF1ab/nsp31527A1527del1gcAgc-11B.1.1.1390.022727
ORF1ab/nsp31527A1527delGCA---11B.1.1.1590.004673
ORF1ab/nsp31527A1527VgCagTa11B.1.1.1900.05
ORF1ab/nsp31527A1527VgCagTa11B.1.1.2140.000055
ORF1ab/nsp31527A1527VgCagTa11B.1.1.2200.001859
ORF1ab/nsp31527A1527delGCA---11B.1.1.2210.010101
ORF1ab/nsp31527A1527VgCagTa11B.1.1.2220.000204
ORF1ab/nsp31527A1527VgCagTa11B.1.1.2540.011236
ORF1ab/nsp31527A1527SGcaTca11B.1.1.280.000311
ORF1ab/nsp31527A1527del1gcAgc-11B.1.1.3060.000438
ORF1ab/nsp31527A1527delGCA---11B.1.1.3060.000438
ORF1ab/nsp31527A1527SGcaTca11B.1.1.3060.000438
ORF1ab/nsp31527A1527VgCagTa11B.1.1.3180.000302
ORF1ab/nsp31527A1527VgCagTa11B.1.1.330.000421
ORF1ab/nsp31527A1527delGCA---11B.1.1.3540.004386
ORF1ab/nsp31527A1527SGcaTca11B.1.1.390.00051
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4070.041667
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4090.002833
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4120.007634
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4320.001266
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4400.011765
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4480.002033
ORF1ab/nsp31527A1527delGCA---11B.1.1.460.004367
ORF1ab/nsp31527A1527AgcAgcC11B.1.1.460.004367
ORF1ab/nsp31527A1527PGcaCca11B.1.1.4670.019231
ORF1ab/nsp31527A1527VgCagTa11B.1.1.4860.001577
ORF1ab/nsp31527A1527TGcaAca11B.1.1.5070.008696
ORF1ab/nsp31527A1527delGCA---11B.1.1.5190.00004
ORF1ab/nsp31527A1527VgCagTa11B.1.1.560.017857
ORF1ab/nsp31527A1527SGcaTca11B.1.1.610.008772
ORF1ab/nsp31527A1527del2gCAg--11B.1.1.70.000001
ORF1ab/nsp31527A1527VgCagTa11B.1.1.700.000341
ORF1ab/nsp31527A1527delGCA---11B.1.1150.021739
ORF1ab/nsp31527A1527VgCagTa11B.1.1400.018868
ORF1ab/nsp31527A1527AgcAgcT11B.1.1600.000031
ORF1ab/nsp31527A1527delGCA---11B.1.1600.000031
ORF1ab/nsp31527A1527del1gcAgc-11B.1.1610.017241
ORF1ab/nsp31527A1527TGcaAca11B.1.1620.005025
ORF1ab/nsp31527A1527VgCagTa11B.1.1700.00431
ORF1ab/nsp31527A1527SGcaTca11B.1.1770.000013
ORF1ab/nsp31527A1527VgCagTa11B.1.177.100.000878
ORF1ab/nsp31527A1527VgCagTa11B.1.177.150.000631
ORF1ab/nsp31527A1527VgCagTa11B.1.177.20.004545
ORF1ab/nsp31527A1527VgCagTa11B.1.177.200.001517
ORF1ab/nsp31527A1527PGcaCca11B.1.177.210.000076
ORF1ab/nsp31527A1527VgCagTa11B.1.177.330.001645
ORF1ab/nsp31527A1527PGcaCca11B.1.177.440.000519
ORF1ab/nsp31527A1527VgCagTa11B.1.177.530.002392
ORF1ab/nsp31527A1527delGCA---11B.1.177.620.001192
ORF1ab/nsp31527A1527AgcAgcG11B.1.177.690.001484
ORF1ab/nsp31527A1527VgCagTa11B.1.177.70.000165
ORF1ab/nsp31527A1527VgCagTa11B.1.177.770.000726
ORF1ab/nsp31527A1527VgCagTa11B.1.177.790.002342
ORF1ab/nsp31527A1527SGcaTca11B.1.1990.004132
ORF1ab/nsp31527A1527delGCA---11B.1.20.000009
ORF1ab/nsp31527A1527del1gcAgc-11B.1.20.000009
ORF1ab/nsp31527A1527delGCA---11B.1.2100.002132
ORF1ab/nsp31527A1527VgCagTa11B.1.2140.003663
ORF1ab/nsp31527A1527VgCagTa11B.1.2320.000537
ORF1ab/nsp31527A1527AgcAgcT11B.1.2340.000132
ORF1ab/nsp31527A1527VgCagTa11B.1.2340.000132
ORF1ab/nsp31527A1527VgCagTa11B.1.2360.002053
ORF1ab/nsp31527A1527VgCagTa11B.1.2390.001221
ORF1ab/nsp31527A1527VgCagTa11B.1.2400.000216
ORF1ab/nsp31527A1527PGcaCca11B.1.2430.00007
ORF1ab/nsp31527A1527del2gCAg--11B.1.2580.000067
ORF1ab/nsp31527A1527KGCaAAa11B.1.2580.000067
ORF1ab/nsp31527A1527delGCA---11B.1.2580.000067
ORF1ab/nsp31527A1527VgCagTa11B.1.2810.021739
ORF1ab/nsp31527A1527PGcaCca11B.1.3490.000715
ORF1ab/nsp31527A1527delGCA---11B.1.3510.00003
ORF1ab/nsp31527A1527AgcAgcG11B.1.36.350.002604
ORF1ab/nsp31527A1527VgCagTa11B.1.3750.00082
ORF1ab/nsp31527A1527AgcAgcG11B.1.4000.000429
ORF1ab/nsp31527A1527delGCA---11B.1.4150.014286
ORF1ab/nsp31527A1527delGCA---11B.1.416.10.001563
ORF1ab/nsp31527A1527VgCagTa11B.1.4260.001009
ORF1ab/nsp31527A1527VgCagTa11B.1.4280.00102
ORF1ab/nsp31527A1527TGcaAca11B.1.4290.000024
ORF1ab/nsp31527A1527delGCA---11B.1.4530.003236
ORF1ab/nsp31527A1527VgCagTa11B.1.4560.003268
ORF1ab/nsp31527A1527VgCagTa11B.1.466.20.000391
ORF1ab/nsp31527A1527VgCagTa11B.1.4990.00105
ORF1ab/nsp31527A1527delGCA---11B.1.5250.000113
ORF1ab/nsp31527A1527del1gcAgc-11B.1.5250.000113
ORF1ab/nsp31527A1527delGCA---11B.1.5260.000024
ORF1ab/nsp31527A1527AgcAgcC11B.1.5260.000024
ORF1ab/nsp31527A1527AgcAgcG11B.1.5650.00081
ORF1ab/nsp31527A1527VgCagTa11B.1.5650.00081
ORF1ab/nsp31527A1527SGcaTca11B.1.5680.001111
ORF1ab/nsp31527A1527PGcaCca11B.1.5750.000303
ORF1ab/nsp31527A1527delGCA---11B.1.575.10.002439
ORF1ab/nsp31527A1527PGcaCca11B.1.5850.027778
ORF1ab/nsp31527A1527VgCagTa11B.1.588.10.038462
ORF1ab/nsp31527A1527delGCA---11B.1.5950.000261
ORF1ab/nsp31527A1527PGcaCca11B.1.5950.000261
ORF1ab/nsp31527A1527TGcaAca11B.1.5960.000087
ORF1ab/nsp31527A1527TGcaAca11B.1.6040.017241
ORF1ab/nsp31527A1527KGCaAAa11B.1.617.20.000004
ORF1ab/nsp31527A1527RGCACGG11B.1.617.20.000004
ORF1ab/nsp31527A1527GgCagGa11B.1.617.20.000004
ORF1ab/nsp31527A1527TGcaAca11B.1.6210.000089
ORF1ab/nsp31527A1527delGCA---11B.1.6210.000089
ORF1ab/nsp31527A1527VgCagTa11B.1.6210.000089
ORF1ab/nsp31527A1527delGCA---11B.1.6280.000352
ORF1ab/nsp31527A1527VgCagTa11B.1.6360.006711
ORF1ab/nsp31527A1527PGcaCca11B.1.6370.000073
ORF1ab/nsp31527A1527EgCagAa11B.1.80.001972
ORF1ab/nsp31527A1527VgCagTa11B.290.003509
ORF1ab/nsp31527A1527VgCagTa11B.30.000831
ORF1ab/nsp31527A1527VgCagTa11B.40.002208
ORF1ab/nsp31527A1527GgCAgGT11B.4.40.018868
ORF1ab/nsp31527A1527VgCagTa11B.60.00091
ORF1ab/nsp31527A1527VgCagTa11B.6.60.000889
ORF1ab/nsp31527A1527VgCagTa11C.160.00106
ORF1ab/nsp31527A1527VgCagTa11C.350.000774
ORF1ab/nsp31527A1527delGCA---11C.350.000774
ORF1ab/nsp31527A1527TGcaAca11C.370.000116
ORF1ab/nsp31527A1527AgcAgcT11D.20.000075
ORF1ab/nsp31527A1527AgcAgcC11K.10.02381
ORF1ab/nsp31527A1527delGCA---11P.10.000016
ORF1ab/nsp31527A1527del1Gca-ca11P.10.000016
ORF1ab/nsp31527A1527del1gcAgc-11P.1.10.000318
ORF1ab/nsp31527A1527VgCagTa11P.1.120.000484
ORF1ab/nsp31527A1527TGcaAca11P.1.140.000048
ORF1ab/nsp31527A1527VgCagTa11P.1.150.000232
ORF1ab/nsp31527A1527delGCA---11P.1.150.000232
ORF1ab/nsp31527A1527EgCagAa11P.1.170.000162
ORF1ab/nsp31527A1527del1gcAgc-11Q.20.000613
ORF1ab/nsp31527A1527VgCagTa11Q.40.000455
ORF1ab/nsp31527A1527delGCA---11Q.80.000165
ORF1ab/nsp31527A1527AgcAgcG11R.10.00009