CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1526 | A1526T | A2344T | nonsyn | Gct | Act | 2164 | 2159 | 0.997689 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526T | A2344T | nonsyn | GcT | AcA | 2164 | 5 | 0.00231054 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526V | A2344V | nonsyn | gCt | gTt | 1762 | 1761 | 0.999432 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526V | A2344V | nonsyn | gCT | gTA | 1762 | 1 | 0.000567537 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526S | A2344S | nonsyn | Gct | Tct | 493 | 491 | 0.995943 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526S | A2344S | nonsyn | GcT | TcG | 493 | 1 | 0.0020284 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526S | A2344S | nonsyn | GCt | AGt | 493 | 1 | 0.0020284 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526A | A2344A | syn | gcT | gcC | 250 | 171 | 0.684 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526A | A2344A | syn | gcT | gcA | 250 | 66 | 0.264 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526A | A2344A | syn | gcT | gcG | 250 | 13 | 0.052 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526del | A2344del | del | GCT | --- | 133 | 133 | 1 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526P | A2344P | nonsyn | Gct | Cct | 6 | 6 | 1 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526del1 | A2344del1 | del | gcT | gc- | 6 | 4 | 0.666667 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526G | A2344G | nonsyn | gCt | gGt | 6 | 4 | 0.666667 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526del1 | A2344del1 | del | gCt | g-t | 6 | 2 | 0.333333 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526G | A2344G | nonsyn | gCT | gGA | 6 | 1 | 0.166667 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526G | A2344G | nonsyn | gCT | gGC | 6 | 1 | 0.166667 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526D | A2344D | nonsyn | gCt | gAt | 5 | 5 | 1 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526N | A2344N | nonsyn | GCT | AAC | 2 | 2 | 1 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526del2 | A2344del2 | del | GCT | --N | 1 | 1 | 1 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526M | A2344M | nonsyn | GCT | ATG | 1 | 1 | 1 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526K | A2344K | nonsyn | GCT | AAA | 1 | 1 | 1 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526I | A2344I | nonsyn | GCt | ATt | 1 | 1 | 1 | 7295-7297 |
ORF1ab/nsp3 | 1526 | A1526F | A2344F | nonsyn | GCt | TTt | 1 | 1 | 1 | 7295-7297 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 2159 | 2164 | All | 0.000413 |
ORF1ab/nsp3 | 1526 | A1526T | GcT | AcA | 5 | 2164 | All | 0.000001 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1761 | 1762 | All | 0.000337 |
ORF1ab/nsp3 | 1526 | A1526V | gCT | gTA | 1 | 1762 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1663 | 1663 | B.1.1.7 | 0.001489 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 491 | 493 | All | 0.000094 |
ORF1ab/nsp3 | 1526 | A1526S | GCt | AGt | 1 | 493 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526S | GcT | TcG | 1 | 493 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 421 | 421 | AY.3 | 0.004187 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 299 | 299 | B.1.617.3 | 0.892537 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 171 | 250 | All | 0.000033 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 66 | 250 | All | 0.000013 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcG | 13 | 250 | All | 0.000002 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 157 | 157 | AY.100 | 0.007223 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 157 | 157 | B.1.617.2 | 0.000591 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 134 | 134 | B.1.429 | 0.003153 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 133 | 133 | All | 0.000025 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 105 | 105 | B.1.1.7 | 0.000094 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 83 | 83 | B.1.1.518 | 0.525316 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 69 | 69 | B.1.234 | 0.009104 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 65 | 65 | B.1.243.2 | 0.942029 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 64 | 64 | B.1.617.2 | 0.000241 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 61 | 61 | AY.4 | 0.000095 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 59 | 59 | AY.33 | 0.00394 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 57 | 57 | B.1.1.519 | 0.002264 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 39 | 39 | B.1.1 | 0.000707 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 39 | 39 | B.1.1.373 | 0.928571 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 37 | 37 | B.1 | 0.000339 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 37 | 37 | B.1.115 | 0.804348 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 34 | 34 | AY.102 | 0.000901 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 34 | 34 | AY.20 | 0.001321 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 15 | 31 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 10 | 31 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcG | 6 | 31 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 26 | 26 | AY.118 | 0.001629 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 26 | 26 | AY.43 | 0.000115 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 26 | 26 | B.1.214.2 | 0.015588 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 22 | 22 | AY.100 | 0.001012 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 21 | 21 | AY.44 | 0.000128 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 21 | 21 | B.1.1.420 | 0.021127 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 16 | 21 | B.1.617.2 | 0.00006 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 5 | 21 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 20 | 20 | B.1.160 | 0.000624 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 20 | 20 | B.1.596 | 0.001743 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 15 | 15 | AY.20 | 0.000583 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 14 | 14 | B.1.165 | 0.166667 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 13 | 13 | B.1.177.60 | 0.00284 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 12 | 12 | Q.8 | 0.001979 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 11 | 11 | AY.121 | 0.001488 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 11 | 11 | B.1.1.422 | 0.5 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 10 | 10 | AY.14 | 0.00088 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 9 | 10 | B.1.177 | 0.000119 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 10 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 10 | 10 | B.1.639 | 0.217391 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 7 | 9 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 2 | 9 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 9 | 9 | AY.7.1 | 0.001014 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 8 | 8 | A.23.1 | 0.005634 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 7 | 7 | AY.79 | 0.008475 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 7 | 7 | AY.93 | 0.001912 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1526 | A1526P | Gct | Cct | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1526 | A1526del1 | gcT | gc- | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1526 | A1526G | gCt | gGt | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1526 | A1526del1 | gCt | g-t | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526G | gCT | gGC | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526G | gCT | gGA | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 5 | 6 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 6 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 6 | 6 | C.1 | 0.014354 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp3 | 1526 | A1526T | GcT | AcA | 5 | 6 | P.1.16 | 0.001871 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 6 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1526 | A1526D | gCt | gAt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 4 | 5 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcG | 1 | 5 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 3 | 5 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 2 | 5 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 5 | 5 | P.5 | 0.068493 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 4 | 4 | AD.2.1 | 0.181818 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 3 | 4 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcG | 1 | 4 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcG | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 4 | 4 | B.1.1.192 | 0.009238 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 4 | 4 | B.1.551 | 0.005161 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 2 | 3 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 3 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcG | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | B.1.416 | 0.003807 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 3 | 3 | B.4 | 0.006623 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 1526 | A1526del1 | gcT | gc- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1526 | A1526G | gCt | gGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1526 | A1526V | gCT | gTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1526 | A1526N | GCT | AAC | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1526 | A1526P | Gct | Cct | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1526 | A1526del1 | gcT | gc- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.72 | 0.002721 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp3 | 1526 | A1526D | gCt | gAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526G | gCt | gGt | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1526 | A1526G | gCT | gGC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526S | GCt | AGt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.1.253 | 0.005013 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 2 | 2 | B.1.115 | 0.043478 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 2 | 2 | B.1.270 | 0.011236 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 2 | 2 | B.1.411 | 0.007407 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.428.3 | 0.025641 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1526 | A1526N | GCT | AAC | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1526 | A1526M | GCT | ATG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526del2 | GCT | --N | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526I | GCt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526K | GCT | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526F | GCt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1526 | A1526G | gCT | gGA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1526 | A1526I | GCt | ATt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1526 | A1526D | gCt | gAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1526 | A1526P | Gct | Cct | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1526 | A1526G | gCt | gGt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1526 | A1526S | GcT | TcG | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1526 | A1526P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1526 | A1526F | GCt | TTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 1526 | A1526P | Gct | Cct | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.1.414 | 0.142857 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.1.452 | 0.111111 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.134 | 0.005464 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.167 | 0.007812 |
ORF1ab/nsp3 | 1526 | A1526P | Gct | Cct | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | B.1.215 | 0.009615 |
ORF1ab/nsp3 | 1526 | A1526D | gCt | gAt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1526 | A1526D | gCt | gAt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | B.1.334 | 0.018182 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1526 | A1526del2 | GCT | --N | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1526 | A1526M | GCT | ATG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1526 | A1526K | GCT | AAA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1526 | A1526del1 | gCt | g-t | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcG | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1526 | A1526del1 | gCt | g-t | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | C.1.1 | 0.076923 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1526 | A1526T | Gct | Act | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1526 | A1526A | gcT | gcA | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 1526 | A1526V | gCt | gTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1526 | A1526del | GCT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1526 | A1526S | Gct | Tct | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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