CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1522 & Codon = gCa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31522V1522AV2340AnonsyngTagCa4994970.9959927283-7285

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31522V1522AgTagCa497499All0.000095
ORF1ab/nsp31522V1522AgTagCa373373AY.40.000581
ORF1ab/nsp31522V1522AgTagCa3939B.1.1.70.000035
ORF1ab/nsp31522V1522AgTagCa3030AY.30.000298
ORF1ab/nsp31522V1522AgTagCa1515B.1.617.20.000056
ORF1ab/nsp31522V1522AgTagCa33AY.430.000013
ORF1ab/nsp31522V1522AgTagCa33B.1.1770.00004
ORF1ab/nsp31522V1522AgTagCa22AY.1180.000125
ORF1ab/nsp31522V1522AgTagCa22AY.410.000588
ORF1ab/nsp31522V1522AgTagCa22B.1.1.330.000842
ORF1ab/nsp31522V1522AgTagCa22B.1.1600.000062
ORF1ab/nsp31522V1522AgTagCa22B.1.20.000018
ORF1ab/nsp31522V1522AgTagCa11AN.10.02
ORF1ab/nsp31522V1522AgTagCa11AY.1170.000085
ORF1ab/nsp31522V1522AgTagCa11AY.250.000006
ORF1ab/nsp31522V1522AgTagCa11AY.260.000028
ORF1ab/nsp31522V1522AgTagCa11AY.330.000067
ORF1ab/nsp31522V1522AgTagCa11AY.340.000097
ORF1ab/nsp31522V1522AgTagCa11AY.4.50.000107
ORF1ab/nsp31522V1522AgTagCa11AY.420.00004
ORF1ab/nsp31522V1522AgTagCa11AY.540.000095
ORF1ab/nsp31522V1522AgTagCa11AY.90.000068
ORF1ab/nsp31522V1522AgTagCa11B.10.000009
ORF1ab/nsp31522V1522AgTagCa11B.1.10.000018
ORF1ab/nsp31522V1522AgTagCa11B.1.1.3480.000796
ORF1ab/nsp31522V1522AgTagCa11B.1.1.3970.002252
ORF1ab/nsp31522V1522AgTagCa11B.1.1460.004237
ORF1ab/nsp31522V1522AgTagCa11B.1.177.560.000668
ORF1ab/nsp31522V1522AgTagCa11B.1.177.620.001192
ORF1ab/nsp31522V1522AgTagCa11B.1.3510.00003
ORF1ab/nsp31522V1522AgTagCa11B.1.360.000146
ORF1ab/nsp31522V1522AgTagCa11B.1.36.390.002217
ORF1ab/nsp31522V1522AgTagCa11B.1.3960.000706
ORF1ab/nsp31522V1522AgTagCa11B.1.4270.00005
ORF1ab/nsp31522V1522AgTagCa11B.1.5250.000113
ORF1ab/nsp31522V1522AgTagCa11B.1.5890.007576

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.