CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1522 & Codon = Ata

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31522V1522IV2340InonsynGtaAta30630617283-7285

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31522V1522IGtaAta306306All0.000059
ORF1ab/nsp31522V1522IGtaAta130130B.1.6320.872483
ORF1ab/nsp31522V1522IGtaAta4646AY.430.000204
ORF1ab/nsp31522V1522IGtaAta4444B.1.1.70.000039
ORF1ab/nsp31522V1522IGtaAta2121AY.4.2.10.003129
ORF1ab/nsp31522V1522IGtaAta99AY.40.000014
ORF1ab/nsp31522V1522IGtaAta99B.1.351.50.005396
ORF1ab/nsp31522V1522IGtaAta77A.10.001973
ORF1ab/nsp31522V1522IGtaAta44B.1.617.20.000015
ORF1ab/nsp31522V1522IGtaAta44B.1.6210.000354
ORF1ab/nsp31522V1522IGtaAta33AY.250.000018
ORF1ab/nsp31522V1522IGtaAta33B.1.177.390.046154
ORF1ab/nsp31522V1522IGtaAta22AY.30.00002
ORF1ab/nsp31522V1522IGtaAta22AY.440.000012
ORF1ab/nsp31522V1522IGtaAta22B.10.000018
ORF1ab/nsp31522V1522IGtaAta22B.1.20.000018
ORF1ab/nsp31522V1522IGtaAta22B.1.6230.001073
ORF1ab/nsp31522V1522IGtaAta22P.10.000032
ORF1ab/nsp31522V1522IGtaAta22P.20.000373
ORF1ab/nsp31522V1522IGtaAta11AY.1170.000085
ORF1ab/nsp31522V1522IGtaAta11AY.460.000104
ORF1ab/nsp31522V1522IGtaAta11AY.46.10.001027
ORF1ab/nsp31522V1522IGtaAta11AY.46.40.000165
ORF1ab/nsp31522V1522IGtaAta11AY.680.000274
ORF1ab/nsp31522V1522IGtaAta11AY.690.000187
ORF1ab/nsp31522V1522IGtaAta11AY.98.10.000048
ORF1ab/nsp31522V1522IGtaAta11B.1.36.220.001208
ORF1ab/nsp31522V1522IGtaAta11B.1.3610.001289
ORF1ab/nsp31522V1522IGtaAta11B.1.4290.000024
ORF1ab/nsp31522V1522IGtaAta11D.20.000075
ORF1ab/nsp31522V1522IGtaAta11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.