CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1522 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31522V1522delV2340deldelGTA---828217283-7285

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31522V1522delGTA---8282All0.000016
ORF1ab/nsp31522V1522delGTA---1313B.1.1.70.000012
ORF1ab/nsp31522V1522delGTA---88B.1.617.20.00003
ORF1ab/nsp31522V1522delGTA---55B.10.000046
ORF1ab/nsp31522V1522delGTA---440.222222
ORF1ab/nsp31522V1522delGTA---44B.1.10.000073
ORF1ab/nsp31522V1522delGTA---33AY.430.000013
ORF1ab/nsp31522V1522delGTA---33B.1.4110.011111
ORF1ab/nsp31522V1522delGTA---22AY.40.000003
ORF1ab/nsp31522V1522delGTA---22AY.420.00008
ORF1ab/nsp31522V1522delGTA---22AY.9.20.000073
ORF1ab/nsp31522V1522delGTA---22B.1.1.2180.015385
ORF1ab/nsp31522V1522delGTA---22B.1.1770.000026
ORF1ab/nsp31522V1522delGTA---22B.1.177.620.002384
ORF1ab/nsp31522V1522delGTA---22B.1.617.10.000258
ORF1ab/nsp31522V1522delGTA---11AD.20.000219
ORF1ab/nsp31522V1522delGTA---11AY.1010.00049
ORF1ab/nsp31522V1522delGTA---11AY.1030.000006
ORF1ab/nsp31522V1522delGTA---11AY.1200.000037
ORF1ab/nsp31522V1522delGTA---11AY.250.000006
ORF1ab/nsp31522V1522delGTA---11AY.360.000148
ORF1ab/nsp31522V1522delGTA---11AY.4.30.000842
ORF1ab/nsp31522V1522delGTA---11AY.4.50.000107
ORF1ab/nsp31522V1522delGTA---11AY.440.000006
ORF1ab/nsp31522V1522delGTA---11AY.50.000021
ORF1ab/nsp31522V1522delGTA---11AY.660.00107
ORF1ab/nsp31522V1522delGTA---11AY.760.004831
ORF1ab/nsp31522V1522delGTA---11AY.840.000437
ORF1ab/nsp31522V1522delGTA---11B.1.1.1590.004673
ORF1ab/nsp31522V1522delGTA---11B.1.1.3540.004386
ORF1ab/nsp31522V1522delGTA---11B.1.1.370.000193
ORF1ab/nsp31522V1522delGTA---11B.1.1.460.004367
ORF1ab/nsp31522V1522delGTA---11B.1.1.5190.00004
ORF1ab/nsp31522V1522delGTA---11B.1.1.5250.005464
ORF1ab/nsp31522V1522delGTA---11B.1.2100.002132
ORF1ab/nsp31522V1522delGTA---11B.1.4150.014286
ORF1ab/nsp31522V1522delGTA---11B.1.416.10.001563
ORF1ab/nsp31522V1522delGTA---11B.1.4530.003236
ORF1ab/nsp31522V1522delGTA---11B.1.4970.000315
ORF1ab/nsp31522V1522delGTA---11B.1.5260.000024
ORF1ab/nsp31522V1522delGTA---11B.1.575.10.002439
ORF1ab/nsp31522V1522delGTA---11B.1.6210.000089
ORF1ab/nsp31522V1522delGTA---11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.