CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1516

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31516F1516FF2334FsynttCttT9142914217265-7267
ORF1ab/nsp31516F1516LF2334LnonsynTtcCtc5394970.9220787265-7267
ORF1ab/nsp31516F1516LF2334LnonsynttCttA539300.05565867265-7267
ORF1ab/nsp31516F1516LF2334LnonsynttCttG53990.01669767265-7267
ORF1ab/nsp31516F1516LF2334LnonsynTtCCtT53930.005565867265-7267
ORF1ab/nsp31516F1516delF2334deldelTTC---747417265-7267
ORF1ab/nsp31516F1516YF2334YnonsyntTctAc50350.77265-7267
ORF1ab/nsp31516F1516YF2334YnonsyntTCtAT50150.37265-7267
ORF1ab/nsp31516F1516CF2334CnonsyntTctGc38370.9736847265-7267
ORF1ab/nsp31516F1516CF2334CnonsyntTCtGT3810.02631587265-7267
ORF1ab/nsp31516F1516SF2334SnonsyntTctCc34310.9117657265-7267
ORF1ab/nsp31516F1516SF2334SnonsyntTCtCT3420.05882357265-7267
ORF1ab/nsp31516F1516SF2334SnonsyntTCtCA3410.02941187265-7267
ORF1ab/nsp31516F1516VF2334VnonsynTtcGtc1090.97265-7267
ORF1ab/nsp31516F1516VF2334VnonsynTtCGtT1010.17265-7267
ORF1ab/nsp31516F1516IF2334InonsynTtcAtc4417265-7267
ORF1ab/nsp31516F1516del1F2334del1delTtc-tc320.6666677265-7267
ORF1ab/nsp31516F1516del1F2334del1delttCtt-310.3333337265-7267
ORF1ab/nsp31516F1516TF2334TnonsynTTcACc1117265-7267
ORF1ab/nsp31516F1516del2F2334del2deltTCt--1117265-7267
ORF1ab/nsp31516F1516XF2334XnonsyntTCtAG1117265-7267

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31516F1516FttCttT91429142All0.001749
ORF1ab/nsp31516F1516FttCttT13071307B.1.1.70.00117
ORF1ab/nsp31516F1516FttCttT931931B.1.1770.012259
ORF1ab/nsp31516F1516FttCttT826826B.1.20.007273
ORF1ab/nsp31516F1516FttCttT724724AY.40.001127
ORF1ab/nsp31516F1516LTtcCtc497539All0.000095
ORF1ab/nsp31516F1516LttCttA30539All0.000006
ORF1ab/nsp31516F1516LttCttG9539All0.000002
ORF1ab/nsp31516F1516LTtCCtT3539All0.000001
ORF1ab/nsp31516F1516FttCttT496496AY.430.002198
ORF1ab/nsp31516F1516FttCttT472472B.1.1.3020.979253
ORF1ab/nsp31516F1516FttCttT471471B.1.617.20.001774
ORF1ab/nsp31516F1516FttCttT458458AY.4.20.009933
ORF1ab/nsp31516F1516LTtcCtc313313B.1.5880.284804
ORF1ab/nsp31516F1516FttCttT291291B.1.3510.00865
ORF1ab/nsp31516F1516FttCttT253253B.1.258.30.423786
ORF1ab/nsp31516F1516FttCttT236236AY.440.001436
ORF1ab/nsp31516F1516FttCttT227227P.10.003576
ORF1ab/nsp31516F1516FttCttT192192B.1.10.003483
ORF1ab/nsp31516F1516FttCttT128128B.1.4290.003012
ORF1ab/nsp31516F1516FttCttT126126AY.1030.000782
ORF1ab/nsp31516F1516FttCttT100100B.10.000916
ORF1ab/nsp31516F1516FttCttT9393B.1.6280.03277
ORF1ab/nsp31516F1516FttCttT8585AY.30.000845
ORF1ab/nsp31516F1516FttCttT8181B.1.5090.07013
ORF1ab/nsp31516F1516FttCttT7979AY.250.000475
ORF1ab/nsp31516F1516delTTC---7474All0.000014
ORF1ab/nsp31516F1516FttCttT6969AY.1200.002565
ORF1ab/nsp31516F1516FttCttT6464B.1.177.680.969697
ORF1ab/nsp31516F1516FttCttT5757B.1.360.008316
ORF1ab/nsp31516F1516LTtcCtc4953B.10.000449
ORF1ab/nsp31516F1516LttCttA353B.10.000027
ORF1ab/nsp31516F1516LttCttG153B.10.000009
ORF1ab/nsp31516F1516YtTctAc3550All0.000007
ORF1ab/nsp31516F1516YtTCtAT1550All0.000003
ORF1ab/nsp31516F1516FttCttT5050AY.260.001416
ORF1ab/nsp31516F1516FttCttT4949AY.290.000773
ORF1ab/nsp31516F1516LTtcCtc4448B.1.20.000387
ORF1ab/nsp31516F1516LTtCCtT248B.1.20.000018
ORF1ab/nsp31516F1516LttCttA248B.1.20.000018
ORF1ab/nsp31516F1516FttCttT4343B.1.1.5190.001708
ORF1ab/nsp31516F1516CtTctGc3738All0.000007
ORF1ab/nsp31516F1516CtTCtGT138All0
ORF1ab/nsp31516F1516FttCttT3838AY.1020.001008
ORF1ab/nsp31516F1516StTctCc3134All0.000006
ORF1ab/nsp31516F1516StTCtCT234All0
ORF1ab/nsp31516F1516StTCtCA134All0
ORF1ab/nsp31516F1516FttCttT2929AY.390.000717
ORF1ab/nsp31516F1516FttCttT2929B.1.5600.134259
ORF1ab/nsp31516F1516FttCttT2828B.1.177.650.018629
ORF1ab/nsp31516F1516LTtcCtc1926B.1.1.70.000017
ORF1ab/nsp31516F1516LttCttG426B.1.1.70.000004
ORF1ab/nsp31516F1516LttCttA326B.1.1.70.000003
ORF1ab/nsp31516F1516FttCttT2626B.1.5260.000611
ORF1ab/nsp31516F1516LTtcCtc2626B.1.5950.006785
ORF1ab/nsp31516F1516FttCttT2525C.370.002902
ORF1ab/nsp31516F1516FttCttT2424AY.330.001603
ORF1ab/nsp31516F1516CtTctGc2424AY.440.000146
ORF1ab/nsp31516F1516FttCttT2424AY.620.010458
ORF1ab/nsp31516F1516FttCttT2424B.1.1.2140.001331
ORF1ab/nsp31516F1516YtTctAc2323AY.40.000036
ORF1ab/nsp31516F1516FttCttT2323AY.98.10.001114
ORF1ab/nsp31516F1516FttCttT2222B.1.1600.000686
ORF1ab/nsp31516F1516FttCttT2222B.1.177.820.010501
ORF1ab/nsp31516F1516YtTCtAT1521B.1.1.70.000013
ORF1ab/nsp31516F1516YtTctAc621B.1.1.70.000005
ORF1ab/nsp31516F1516StTctCc2020AY.40.000031
ORF1ab/nsp31516F1516FttCttT2020B.1.5960.001743
ORF1ab/nsp31516F1516FttCttT1919AY.470.000591
ORF1ab/nsp31516F1516FttCttT1919B.1.1.370.003664
ORF1ab/nsp31516F1516FttCttT1818B.1.177.830.026667
ORF1ab/nsp31516F1516FttCttT1717AY.200.000661
ORF1ab/nsp31516F1516FttCttT1717P.1.140.000813
ORF1ab/nsp31516F1516FttCttT1616AY.50.00033
ORF1ab/nsp31516F1516FttCttT1616B.1.2430.001113
ORF1ab/nsp31516F1516FttCttT1515AY.460.001561
ORF1ab/nsp31516F1516FttCttT1515AY.610.001572
ORF1ab/nsp31516F1516FttCttT1515B.1.2400.003233
ORF1ab/nsp31516F1516FttCttT1414AY.420.000563
ORF1ab/nsp31516F1516FttCttT1414B.1.4690.050542
ORF1ab/nsp31516F1516delTTC---1313B.1.1.70.000012
ORF1ab/nsp31516F1516FttCttT1313B.1.177.810.002461
ORF1ab/nsp31516F1516FttCttT1313B.1.2340.001715
ORF1ab/nsp31516F1516FttCttT1212B.1.617.10.001548
ORF1ab/nsp31516F1516FttCttT1212Q.10.001516
ORF1ab/nsp31516F1516FttCttT1111AY.750.000616
ORF1ab/nsp31516F1516FttCttT1111AY.9.10.000921
ORF1ab/nsp31516F1516FttCttT1111B.1.1.1530.012048
ORF1ab/nsp31516F1516FttCttT1111B.1.390.042969
ORF1ab/nsp31516F1516LTtcCtc911B.1.617.20.000034
ORF1ab/nsp31516F1516LttCttA111B.1.617.20.000004
ORF1ab/nsp31516F1516LttCttG111B.1.617.20.000004
ORF1ab/nsp31516F1516FttCttT1111Q.30.001595
ORF1ab/nsp31516F1516VTtcGtc910All0.000002
ORF1ab/nsp31516F1516VTtCGtT110All0
ORF1ab/nsp31516F1516FttCttT1010AY.1000.00046
ORF1ab/nsp31516F1516FttCttT1010AY.39.10.000396
ORF1ab/nsp31516F1516FttCttT1010B.1.351.20.003026
ORF1ab/nsp31516F1516FttCttT1010B.1.4270.000505
ORF1ab/nsp31516F1516FttCttT99AY.1140.00208
ORF1ab/nsp31516F1516FttCttT99AY.1160.002581
ORF1ab/nsp31516F1516FttCttT99AY.1180.000564
ORF1ab/nsp31516F1516FttCttT99AY.1190.000318
ORF1ab/nsp31516F1516LTtcCtc79AY.40.000011
ORF1ab/nsp31516F1516LttCttA29AY.40.000003
ORF1ab/nsp31516F1516FttCttT99AY.450.001095
ORF1ab/nsp31516F1516FttCttT88AY.130.001288
ORF1ab/nsp31516F1516FttCttT88AY.230.000558
ORF1ab/nsp31516F1516FttCttT88B.1.4090.00625
ORF1ab/nsp31516F1516FttCttT77AY.1060.002344
ORF1ab/nsp31516F1516FttCttT77AY.480.003256
ORF1ab/nsp31516F1516FttCttT77AY.9.20.000257
ORF1ab/nsp31516F1516FttCttT77B.1.2580.000466
ORF1ab/nsp31516F1516FttCttT77B.1.466.20.002739
ORF1ab/nsp31516F1516FttCttT66AY.1170.000507
ORF1ab/nsp31516F1516FttCttT66AY.870.004996
ORF1ab/nsp31516F1516FttCttT66AY.950.004566
ORF1ab/nsp31516F1516FttCttT66B.1.1.2260.034884
ORF1ab/nsp31516F1516FttCttT66B.1.4000.002574
ORF1ab/nsp31516F1516delTTC---66B.1.617.20.000023
ORF1ab/nsp31516F1516FttCttT66B.1.6210.000531
ORF1ab/nsp31516F1516FttCttT55A.2.50.002495
ORF1ab/nsp31516F1516FttCttT55AY.1100.000563
ORF1ab/nsp31516F1516FttCttT55AY.29.10.001103
ORF1ab/nsp31516F1516FttCttT55AY.34.10.00255
ORF1ab/nsp31516F1516FttCttT55AY.4.50.000537
ORF1ab/nsp31516F1516LTtcCtc55AY.540.000477
ORF1ab/nsp31516F1516FttCttT55AY.980.000395
ORF1ab/nsp31516F1516FttCttT55B.1.1.2770.003794
ORF1ab/nsp31516F1516FttCttT55B.1.1.280.001556
ORF1ab/nsp31516F1516FttCttT55B.1.1.4340.001743
ORF1ab/nsp31516F1516FttCttT55B.1.1.500.003394
ORF1ab/nsp31516F1516FttCttT55B.1.177.600.001092
ORF1ab/nsp31516F1516FttCttT55B.1.2210.000355
ORF1ab/nsp31516F1516LttCttA35B.1.5610.001191
ORF1ab/nsp31516F1516LTtcCtc25B.1.5610.000794
ORF1ab/nsp31516F1516FttCttT55B.1.5750.001517
ORF1ab/nsp31516F1516FttCttT55B.1.5970.023148
ORF1ab/nsp31516F1516CtTctGc55B.1.617.20.000019
ORF1ab/nsp31516F1516FttCttT55B.1.621.10.002529
ORF1ab/nsp31516F1516FttCttT55B.1.6370.000365
ORF1ab/nsp31516F1516FttCttT55D.20.000375
ORF1ab/nsp31516F1516LttCttA35P.1.10.000953
ORF1ab/nsp31516F1516LttCttG25P.1.10.000635
ORF1ab/nsp31516F1516ITtcAtc44All0.000001
ORF1ab/nsp31516F1516FttCttT44AY.1090.002959
ORF1ab/nsp31516F1516FttCttT44AY.46.20.002541
ORF1ab/nsp31516F1516FttCttT44AY.5.30.00135
ORF1ab/nsp31516F1516FttCttT44AY.680.001095
ORF1ab/nsp31516F1516FttCttT44AY.690.000747
ORF1ab/nsp31516F1516FttCttT44AY.7.20.002237
ORF1ab/nsp31516F1516FttCttT44AY.920.001149
ORF1ab/nsp31516F1516delTTC---44B.10.000037
ORF1ab/nsp31516F1516delTTC---44B.1.10.000073
ORF1ab/nsp31516F1516FttCttT44B.1.1.2220.000816
ORF1ab/nsp31516F1516FttCttT44B.1.1.2740.020202
ORF1ab/nsp31516F1516FttCttT44B.1.1.2840.00043
ORF1ab/nsp31516F1516FttCttT44B.1.1.3480.003185
ORF1ab/nsp31516F1516FttCttT44B.1.177.40.000844
ORF1ab/nsp31516F1516FttCttT44B.1.3180.153846
ORF1ab/nsp31516F1516FttCttT44B.1.4020.039216
ORF1ab/nsp31516F1516FttCttT44B.1.4560.013072
ORF1ab/nsp31516F1516LTtcCtc44B.1.5670.013333
ORF1ab/nsp31516F1516FttCttT44P.1.120.001936
ORF1ab/nsp31516F1516FttCttT44P.1.150.000929
ORF1ab/nsp31516F1516FttCttT44P.20.000747
ORF1ab/nsp31516F1516FttCttT44Q.80.00066
ORF1ab/nsp31516F1516FttCttT33A.10.000846
ORF1ab/nsp31516F1516del1Ttc-tc23All0
ORF1ab/nsp31516F1516del1ttCtt-13All0
ORF1ab/nsp31516F1516FttCttT33AY.1010.001471
ORF1ab/nsp31516F1516FttCttT33AY.1210.000406
ORF1ab/nsp31516F1516FttCttT33AY.3.10.000256
ORF1ab/nsp31516F1516LTtcCtc23AY.440.000012
ORF1ab/nsp31516F1516LttCttA13AY.440.000006
ORF1ab/nsp31516F1516FttCttT33AY.46.60.000217
ORF1ab/nsp31516F1516FttCttT33AY.530.000863
ORF1ab/nsp31516F1516FttCttT33AY.80.001818
ORF1ab/nsp31516F1516FttCttT33AY.840.001312
ORF1ab/nsp31516F1516FttCttT33B.1.1.3060.001315
ORF1ab/nsp31516F1516FttCttT33B.1.1.330.001263
ORF1ab/nsp31516F1516LTtcCtc33B.1.1.3760.017857
ORF1ab/nsp31516F1516FttCttT33B.1.1.4860.004732
ORF1ab/nsp31516F1516delTTC---33B.1.1770.00004
ORF1ab/nsp31516F1516FttCttT33B.1.177.770.002179
ORF1ab/nsp31516F1516FttCttT33B.1.220.003953
ORF1ab/nsp31516F1516FttCttT33B.1.258.170.000312
ORF1ab/nsp31516F1516FttCttT33B.1.36.380.004926
ORF1ab/nsp31516F1516FttCttT33B.1.4060.018182
ORF1ab/nsp31516F1516delTTC---33B.1.4110.011111
ORF1ab/nsp31516F1516FttCttT33B.1.429.10.036145
ORF1ab/nsp31516F1516FttCttT33Q.40.001364
ORF1ab/nsp31516F1516FttCttT33R.10.00027
ORF1ab/nsp31516F1516StTctCc220.111111
ORF1ab/nsp31516F1516FttCttT220.111111
ORF1ab/nsp31516F1516delTTC---220.111111
ORF1ab/nsp31516F1516LttCttA220.111111
ORF1ab/nsp31516F1516VTtcGtc120.055556
ORF1ab/nsp31516F1516VTtCGtT120.055556
ORF1ab/nsp31516F1516FttCttT22A0.000774
ORF1ab/nsp31516F1516FttCttT22A.2.5.30.020619
ORF1ab/nsp31516F1516FttCttT22AY.320.001065
ORF1ab/nsp31516F1516FttCttT22AY.340.000194
ORF1ab/nsp31516F1516delTTC---22AY.40.000003
ORF1ab/nsp31516F1516CtTctGc22AY.40.000003
ORF1ab/nsp31516F1516FttCttT22AY.4.2.10.000298
ORF1ab/nsp31516F1516FttCttT22AY.4.40.000818
ORF1ab/nsp31516F1516delTTC---22AY.420.00008
ORF1ab/nsp31516F1516delTTC---22AY.430.000009
ORF1ab/nsp31516F1516FttCttT22AY.46.10.002053
ORF1ab/nsp31516F1516FttCttT22AY.540.000191
ORF1ab/nsp31516F1516FttCttT22AY.560.00321
ORF1ab/nsp31516F1516FttCttT22AY.60.000082
ORF1ab/nsp31516F1516FttCttT22AY.7.10.000225
ORF1ab/nsp31516F1516StTctCc22AY.770.002255
ORF1ab/nsp31516F1516FttCttT22AY.790.002421
ORF1ab/nsp31516F1516delTTC---22AY.9.20.000073
ORF1ab/nsp31516F1516FttCttT22AY.930.000546
ORF1ab/nsp31516F1516FttCttT22AY.99.20.000184
ORF1ab/nsp31516F1516delTTC---22B.1.1.2180.015385
ORF1ab/nsp31516F1516FttCttT22B.1.1.2400.00939
ORF1ab/nsp31516F1516LTtcCtc22B.1.1.2770.001517
ORF1ab/nsp31516F1516FttCttT22B.1.1.3180.000604
ORF1ab/nsp31516F1516FttCttT22B.1.1.3220.017544
ORF1ab/nsp31516F1516FttCttT22B.1.1.3270.2
ORF1ab/nsp31516F1516FttCttT22B.1.1.3440.021505
ORF1ab/nsp31516F1516FttCttT22B.1.1.3590.055556
ORF1ab/nsp31516F1516FttCttT22B.1.1.3680.006173
ORF1ab/nsp31516F1516FttCttT22B.1.1.4480.004065
ORF1ab/nsp31516F1516FttCttT22B.1.1.4850.033333
ORF1ab/nsp31516F1516CtTctGc22B.1.1.70.000002
ORF1ab/nsp31516F1516StTctCc12B.1.1.70.000001
ORF1ab/nsp31516F1516StTCtCT12B.1.1.70.000001
ORF1ab/nsp31516F1516FttCttT22B.1.1.830.00542
ORF1ab/nsp31516F1516FttCttT22B.1.1280.001271
ORF1ab/nsp31516F1516FttCttT22B.1.1420.005797
ORF1ab/nsp31516F1516FttCttT22B.1.1660.016949
ORF1ab/nsp31516F1516FttCttT22B.1.177.120.000303
ORF1ab/nsp31516F1516delTTC---22B.1.177.620.002384
ORF1ab/nsp31516F1516FttCttT22B.1.177.70.00033
ORF1ab/nsp31516F1516FttCttT22B.1.3110.000549
ORF1ab/nsp31516F1516FttCttT22B.1.36.290.001035
ORF1ab/nsp31516F1516FttCttT22B.1.36.70.008
ORF1ab/nsp31516F1516FttCttT22B.1.36.80.002
ORF1ab/nsp31516F1516FttCttT22B.1.438.10.000215
ORF1ab/nsp31516F1516FttCttT22B.1.4620.014493
ORF1ab/nsp31516F1516FttCttT22B.1.5250.000226
ORF1ab/nsp31516F1516FttCttT22B.1.5680.002222
ORF1ab/nsp31516F1516FttCttT22B.1.5880.00182
ORF1ab/nsp31516F1516LttCttA12B.1.5960.000087
ORF1ab/nsp31516F1516LTtcCtc12B.1.5960.000087
ORF1ab/nsp31516F1516delTTC---22B.1.617.10.000258
ORF1ab/nsp31516F1516FttCttT22B.1.6180.008065
ORF1ab/nsp31516F1516FttCttT22N.100.058824
ORF1ab/nsp31516F1516FttCttT22P.40.007605
ORF1ab/nsp31516F1516FttCttT11A.2.20.001689
ORF1ab/nsp31516F1516FttCttT11A.270.001656
ORF1ab/nsp31516F1516FttCttT11AD.20.000219
ORF1ab/nsp31516F1516delTTC---11AD.20.000219
ORF1ab/nsp31516F1516del2tTCt--11All0
ORF1ab/nsp31516F1516TTTcACc11All0
ORF1ab/nsp31516F1516XtTCtAG11All0
ORF1ab/nsp31516F1516FttCttT11AM.40.003571
ORF1ab/nsp31516F1516FttCttT11AP.10.001502
ORF1ab/nsp31516F1516FttCttT11AV.10.005051
ORF1ab/nsp31516F1516FttCttT11AY.10.000396
ORF1ab/nsp31516F1516CtTctGc11AY.1000.000046
ORF1ab/nsp31516F1516delTTC---11AY.1010.00049
ORF1ab/nsp31516F1516FttCttT11AY.1130.000142
ORF1ab/nsp31516F1516FttCttT11AY.116.10.000311
ORF1ab/nsp31516F1516delTTC---11AY.1200.000037
ORF1ab/nsp31516F1516ITtcAtc11AY.1200.000037
ORF1ab/nsp31516F1516FttCttT11AY.140.000088
ORF1ab/nsp31516F1516FttCttT11AY.160.00038
ORF1ab/nsp31516F1516FttCttT11AY.190.00114
ORF1ab/nsp31516F1516FttCttT11AY.20.000356
ORF1ab/nsp31516F1516FttCttT11AY.220.002092
ORF1ab/nsp31516F1516FttCttT11AY.23.10.000417
ORF1ab/nsp31516F1516FttCttT11AY.240.000431
ORF1ab/nsp31516F1516delTTC---11AY.250.000006
ORF1ab/nsp31516F1516VTtcGtc11AY.260.000028
ORF1ab/nsp31516F1516FttCttT11AY.270.000065
ORF1ab/nsp31516F1516LTtcCtc11AY.270.000065
ORF1ab/nsp31516F1516VTtcGtc11AY.290.000016
ORF1ab/nsp31516F1516LTtcCtc11AY.290.000016
ORF1ab/nsp31516F1516FttCttT11AY.360.000148
ORF1ab/nsp31516F1516delTTC---11AY.360.000148
ORF1ab/nsp31516F1516LTtcCtc11AY.360.000148
ORF1ab/nsp31516F1516FttCttT11AY.380.000499
ORF1ab/nsp31516F1516LttCttA11AY.390.000025
ORF1ab/nsp31516F1516VTtcGtc11AY.39.10.00004
ORF1ab/nsp31516F1516VTtcGtc11AY.40.000002
ORF1ab/nsp31516F1516delTTC---11AY.4.30.000842
ORF1ab/nsp31516F1516FttCttT11AY.4.30.000842
ORF1ab/nsp31516F1516delTTC---11AY.4.50.000107
ORF1ab/nsp31516F1516CtTctGc11AY.430.000004
ORF1ab/nsp31516F1516StTctCc11AY.430.000004
ORF1ab/nsp31516F1516YtTctAc11AY.430.000004
ORF1ab/nsp31516F1516LTtcCtc11AY.430.000004
ORF1ab/nsp31516F1516StTctCc11AY.440.000006
ORF1ab/nsp31516F1516delTTC---11AY.440.000006
ORF1ab/nsp31516F1516XtTCtAG11AY.460.000104
ORF1ab/nsp31516F1516FttCttT11AY.46.40.000165
ORF1ab/nsp31516F1516VTtcGtc11AY.46.60.000072
ORF1ab/nsp31516F1516LttCttA11AY.490.003195
ORF1ab/nsp31516F1516delTTC---11AY.50.000021
ORF1ab/nsp31516F1516del1ttCtt-11AY.540.000095
ORF1ab/nsp31516F1516YtTctAc11AY.540.000095
ORF1ab/nsp31516F1516FttCttT11AY.550.000917
ORF1ab/nsp31516F1516FttCttT11AY.570.000656
ORF1ab/nsp31516F1516FttCttT11AY.590.00053
ORF1ab/nsp31516F1516FttCttT11AY.630.000387
ORF1ab/nsp31516F1516delTTC---11AY.660.00107
ORF1ab/nsp31516F1516FttCttT11AY.660.00107
ORF1ab/nsp31516F1516StTCtCA11AY.670.000464
ORF1ab/nsp31516F1516FttCttT11AY.670.000464
ORF1ab/nsp31516F1516del1Ttc-tc11AY.670.000464
ORF1ab/nsp31516F1516FttCttT11AY.70.000196
ORF1ab/nsp31516F1516FttCttT11AY.710.000475
ORF1ab/nsp31516F1516FttCttT11AY.740.000116
ORF1ab/nsp31516F1516FttCttT11AY.760.004831
ORF1ab/nsp31516F1516delTTC---11AY.760.004831
ORF1ab/nsp31516F1516FttCttT11AY.770.001127
ORF1ab/nsp31516F1516delTTC---11AY.840.000437
ORF1ab/nsp31516F1516FttCttT11AY.890.004902
ORF1ab/nsp31516F1516FttCttT11AY.900.000684
ORF1ab/nsp31516F1516FttCttT11AY.940.000443
ORF1ab/nsp31516F1516delTTC---11AY.990.001049
ORF1ab/nsp31516F1516FttCttT11B0.000128
ORF1ab/nsp31516F1516YtTctAc11B.10.000009
ORF1ab/nsp31516F1516CtTCtGT11B.10.000009
ORF1ab/nsp31516F1516LttCttA11B.1.10.000018
ORF1ab/nsp31516F1516FttCttT11B.1.1.100.001115
ORF1ab/nsp31516F1516FttCttT11B.1.1.1170.009709
ORF1ab/nsp31516F1516StTctCc11B.1.1.1280.007092
ORF1ab/nsp31516F1516FttCttT11B.1.1.2160.00089
ORF1ab/nsp31516F1516FttCttT11B.1.1.2270.004348
ORF1ab/nsp31516F1516FttCttT11B.1.1.250.000569
ORF1ab/nsp31516F1516FttCttT11B.1.1.2610.008621
ORF1ab/nsp31516F1516FttCttT11B.1.1.2790.001121
ORF1ab/nsp31516F1516FttCttT11B.1.1.2940.001266
ORF1ab/nsp31516F1516FttCttT11B.1.1.2980.000862
ORF1ab/nsp31516F1516LTtcCtc11B.1.1.3060.000438
ORF1ab/nsp31516F1516FttCttT11B.1.1.3110.000358
ORF1ab/nsp31516F1516FttCttT11B.1.1.3230.014085
ORF1ab/nsp31516F1516FttCttT11B.1.1.3260.001761
ORF1ab/nsp31516F1516FttCttT11B.1.1.3490.010309
ORF1ab/nsp31516F1516FttCttT11B.1.1.3540.004386
ORF1ab/nsp31516F1516LTtcCtc11B.1.1.3680.003086
ORF1ab/nsp31516F1516delTTC---11B.1.1.370.000193
ORF1ab/nsp31516F1516LTtcCtc11B.1.1.3770.001381
ORF1ab/nsp31516F1516FttCttT11B.1.1.3880.045455
ORF1ab/nsp31516F1516FttCttT11B.1.1.3890.006061
ORF1ab/nsp31516F1516FttCttT11B.1.1.3980.003226
ORF1ab/nsp31516F1516FttCttT11B.1.1.4030.025641
ORF1ab/nsp31516F1516FttCttT11B.1.1.4320.001266
ORF1ab/nsp31516F1516delTTC---11B.1.1.460.004367
ORF1ab/nsp31516F1516FttCttT11B.1.1.460.004367
ORF1ab/nsp31516F1516FttCttT11B.1.1.4620.008621
ORF1ab/nsp31516F1516delTTC---11B.1.1.4640.001473
ORF1ab/nsp31516F1516FttCttT11B.1.1.4660.008696
ORF1ab/nsp31516F1516FttCttT11B.1.1.470.005348
ORF1ab/nsp31516F1516FttCttT11B.1.1.4870.005587
ORF1ab/nsp31516F1516FttCttT11B.1.1.5170.006803
ORF1ab/nsp31516F1516delTTC---11B.1.1.5250.005464
ORF1ab/nsp31516F1516del1Ttc-tc11B.1.1.70.000001
ORF1ab/nsp31516F1516VTtcGtc11B.1.1.70.000001
ORF1ab/nsp31516F1516FttCttT11B.1.1.700.000341
ORF1ab/nsp31516F1516FttCttT11B.1.1110.001175
ORF1ab/nsp31516F1516FttCttT11B.1.1470.000756
ORF1ab/nsp31516F1516LttCttA11B.1.1600.000031
ORF1ab/nsp31516F1516FttCttT11B.1.160.300.002976
ORF1ab/nsp31516F1516FttCttT11B.1.1730.026316
ORF1ab/nsp31516F1516CtTctGc11B.1.1770.000013
ORF1ab/nsp31516F1516LttCttG11B.1.1770.000013
ORF1ab/nsp31516F1516LttCttA11B.1.177.120.000152
ORF1ab/nsp31516F1516FttCttT11B.1.177.170.000821
ORF1ab/nsp31516F1516YtTctAc11B.1.177.210.000076
ORF1ab/nsp31516F1516FttCttT11B.1.177.210.000076
ORF1ab/nsp31516F1516FttCttT11B.1.177.330.001645
ORF1ab/nsp31516F1516FttCttT11B.1.177.430.001477
ORF1ab/nsp31516F1516FttCttT11B.1.177.500.004695
ORF1ab/nsp31516F1516FttCttT11B.1.177.530.002392
ORF1ab/nsp31516F1516FttCttT11B.1.177.570.000281
ORF1ab/nsp31516F1516LTtcCtc11B.1.177.70.000165
ORF1ab/nsp31516F1516FttCttT11B.1.177.730.000566
ORF1ab/nsp31516F1516FttCttT11B.1.177.750.001041
ORF1ab/nsp31516F1516LttCttA11B.1.177.750.001041
ORF1ab/nsp31516F1516FttCttT11B.1.177.800.001912
ORF1ab/nsp31516F1516FttCttT11B.1.177.860.000183
ORF1ab/nsp31516F1516del2tTCt--11B.1.20.000009
ORF1ab/nsp31516F1516StTCtCT11B.1.20.000009
ORF1ab/nsp31516F1516ITtcAtc11B.1.20.000009
ORF1ab/nsp31516F1516FttCttT11B.1.2060.000816
ORF1ab/nsp31516F1516delTTC---11B.1.2100.002132
ORF1ab/nsp31516F1516FttCttT11B.1.214.20.0006
ORF1ab/nsp31516F1516FttCttT11B.1.2230.002778
ORF1ab/nsp31516F1516FttCttT11B.1.2320.000537
ORF1ab/nsp31516F1516LttCttA11B.1.2580.000067
ORF1ab/nsp31516F1516FttCttT11B.1.258.140.00098
ORF1ab/nsp31516F1516FttCttT11B.1.2600.003344
ORF1ab/nsp31516F1516FttCttT11B.1.3380.008621
ORF1ab/nsp31516F1516VTtcGtc11B.1.3510.00003
ORF1ab/nsp31516F1516LTtcCtc11B.1.3510.00003
ORF1ab/nsp31516F1516FttCttT11B.1.351.30.000876
ORF1ab/nsp31516F1516LTtcCtc11B.1.360.000146
ORF1ab/nsp31516F1516FttCttT11B.1.36.100.004785
ORF1ab/nsp31516F1516FttCttT11B.1.36.170.000494
ORF1ab/nsp31516F1516FttCttT11B.1.36.180.00042
ORF1ab/nsp31516F1516FttCttT11B.1.36.220.001208
ORF1ab/nsp31516F1516LttCttA11B.1.36.350.002604
ORF1ab/nsp31516F1516FttCttT11B.1.36.390.002217
ORF1ab/nsp31516F1516FttCttT11B.1.3620.001541
ORF1ab/nsp31516F1516FttCttT11B.1.3950.007042
ORF1ab/nsp31516F1516delTTC---11B.1.4150.014286
ORF1ab/nsp31516F1516delTTC---11B.1.416.10.001563
ORF1ab/nsp31516F1516FttCttT11B.1.4220.000812
ORF1ab/nsp31516F1516StTctCc11B.1.4290.000024
ORF1ab/nsp31516F1516delTTC---11B.1.4530.003236
ORF1ab/nsp31516F1516VTtcGtc11B.1.466.20.000391
ORF1ab/nsp31516F1516FttCttT11B.1.4680.005714
ORF1ab/nsp31516F1516FttCttT11B.1.5160.001957
ORF1ab/nsp31516F1516FttCttT11B.1.5170.000427
ORF1ab/nsp31516F1516delTTC---11B.1.5260.000024
ORF1ab/nsp31516F1516LTtcCtc11B.1.5260.000024
ORF1ab/nsp31516F1516FttCttT11B.1.5380.008065
ORF1ab/nsp31516F1516FttCttT11B.1.5390.017544
ORF1ab/nsp31516F1516FttCttT11B.1.5510.00129
ORF1ab/nsp31516F1516FttCttT11B.1.5610.000397
ORF1ab/nsp31516F1516ITtcAtc11B.1.564.10.001577
ORF1ab/nsp31516F1516FttCttT11B.1.5650.00081
ORF1ab/nsp31516F1516delTTC---11B.1.575.10.002439
ORF1ab/nsp31516F1516FttCttT11B.1.5770.000687
ORF1ab/nsp31516F1516FttCttT11B.1.5810.009434
ORF1ab/nsp31516F1516FttCttT11B.1.5820.000491
ORF1ab/nsp31516F1516FttCttT11B.1.5950.000261
ORF1ab/nsp31516F1516StTctCc11B.1.5960.000087
ORF1ab/nsp31516F1516FttCttT11B.1.6090.000479
ORF1ab/nsp31516F1516FttCttT11B.1.6120.002653
ORF1ab/nsp31516F1516LTtCCtT11B.1.617.10.000129
ORF1ab/nsp31516F1516StTctCc11B.1.617.20.000004
ORF1ab/nsp31516F1516TTTcACc11B.1.617.20.000004
ORF1ab/nsp31516F1516YtTctAc11B.1.6190.000871
ORF1ab/nsp31516F1516delTTC---11B.1.6210.000089
ORF1ab/nsp31516F1516FttCttT11B.1.6260.005714
ORF1ab/nsp31516F1516FttCttT11B.230.002924
ORF1ab/nsp31516F1516FttCttT11B.40.002208
ORF1ab/nsp31516F1516FttCttT11B.400.000364
ORF1ab/nsp31516F1516LttCttA11C.160.00106
ORF1ab/nsp31516F1516ITtcAtc11C.350.000774
ORF1ab/nsp31516F1516FttCttT11C.360.000911
ORF1ab/nsp31516F1516FttCttT11C.37.10.002618
ORF1ab/nsp31516F1516YtTctAc11P.10.000016
ORF1ab/nsp31516F1516CtTctGc11P.10.000016
ORF1ab/nsp31516F1516delTTC---11P.1.150.000232
ORF1ab/nsp31516F1516FttCttT11P.1.160.000374
ORF1ab/nsp31516F1516FttCttT11P.1.70.000319
ORF1ab/nsp31516F1516FttCttT11P.1.90.004808
ORF1ab/nsp31516F1516FttCttT11Q.20.000613
ORF1ab/nsp31516F1516FttCttT11Q.50.016949

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.