CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1516

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31516F1516FF2334FsynttCttT9142914217265-7267
ORF1ab/nsp31516F1516LF2334LnonsynTtcCtc5394970.9220787265-7267
ORF1ab/nsp31516F1516LF2334LnonsynttCttA539300.05565867265-7267
ORF1ab/nsp31516F1516LF2334LnonsynttCttG53990.01669767265-7267
ORF1ab/nsp31516F1516LF2334LnonsynTtCCtT53930.005565867265-7267
ORF1ab/nsp31516F1516delF2334deldelTTC---747417265-7267
ORF1ab/nsp31516F1516YF2334YnonsyntTctAc50350.77265-7267
ORF1ab/nsp31516F1516YF2334YnonsyntTCtAT50150.37265-7267
ORF1ab/nsp31516F1516CF2334CnonsyntTctGc38370.9736847265-7267
ORF1ab/nsp31516F1516CF2334CnonsyntTCtGT3810.02631587265-7267
ORF1ab/nsp31516F1516SF2334SnonsyntTctCc34310.9117657265-7267
ORF1ab/nsp31516F1516SF2334SnonsyntTCtCT3420.05882357265-7267
ORF1ab/nsp31516F1516SF2334SnonsyntTCtCA3410.02941187265-7267
ORF1ab/nsp31516F1516VF2334VnonsynTtcGtc1090.97265-7267
ORF1ab/nsp31516F1516VF2334VnonsynTtCGtT1010.17265-7267
ORF1ab/nsp31516F1516IF2334InonsynTtcAtc4417265-7267
ORF1ab/nsp31516F1516del1F2334del1delTtc-tc320.6666677265-7267
ORF1ab/nsp31516F1516del1F2334del1delttCtt-310.3333337265-7267
ORF1ab/nsp31516F1516TF2334TnonsynTTcACc1117265-7267
ORF1ab/nsp31516F1516del2F2334del2deltTCt--1117265-7267
ORF1ab/nsp31516F1516XF2334XnonsyntTCtAG1117265-7267

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31516F1516FttCttT91429142All0.001749
ORF1ab/nsp31516F1516FttCttT13071307B.1.1.70.00117
ORF1ab/nsp31516F1516FttCttT931931B.1.1770.012259
ORF1ab/nsp31516F1516FttCttT826826B.1.20.007273
ORF1ab/nsp31516F1516FttCttT724724AY.40.001127
ORF1ab/nsp31516F1516LTtcCtc497539All0.000095
ORF1ab/nsp31516F1516LttCttA30539All0.000006
ORF1ab/nsp31516F1516LttCttG9539All0.000002
ORF1ab/nsp31516F1516LTtCCtT3539All0.000001
ORF1ab/nsp31516F1516FttCttT496496AY.430.002198
ORF1ab/nsp31516F1516FttCttT472472B.1.1.3020.979253
ORF1ab/nsp31516F1516FttCttT471471B.1.617.20.001774
ORF1ab/nsp31516F1516FttCttT458458AY.4.20.009933
ORF1ab/nsp31516F1516LTtcCtc313313B.1.5880.284804
ORF1ab/nsp31516F1516FttCttT291291B.1.3510.00865
ORF1ab/nsp31516F1516FttCttT253253B.1.258.30.423786
ORF1ab/nsp31516F1516FttCttT236236AY.440.001436
ORF1ab/nsp31516F1516FttCttT227227P.10.003576
ORF1ab/nsp31516F1516FttCttT192192B.1.10.003483
ORF1ab/nsp31516F1516FttCttT128128B.1.4290.003012
ORF1ab/nsp31516F1516FttCttT126126AY.1030.000782
ORF1ab/nsp31516F1516FttCttT100100B.10.000916
ORF1ab/nsp31516F1516FttCttT9393B.1.6280.03277
ORF1ab/nsp31516F1516FttCttT8585AY.30.000845
ORF1ab/nsp31516F1516FttCttT8181B.1.5090.07013
ORF1ab/nsp31516F1516FttCttT7979AY.250.000475
ORF1ab/nsp31516F1516delTTC---7474All0.000014
ORF1ab/nsp31516F1516FttCttT6969AY.1200.002565
ORF1ab/nsp31516F1516FttCttT6464B.1.177.680.969697
ORF1ab/nsp31516F1516FttCttT5757B.1.360.008316
ORF1ab/nsp31516F1516LTtcCtc4953B.10.000449
ORF1ab/nsp31516F1516LttCttA353B.10.000027
ORF1ab/nsp31516F1516LttCttG153B.10.000009
ORF1ab/nsp31516F1516YtTctAc3550All0.000007
ORF1ab/nsp31516F1516YtTCtAT1550All0.000003
ORF1ab/nsp31516F1516FttCttT5050AY.260.001416
ORF1ab/nsp31516F1516FttCttT4949AY.290.000773
ORF1ab/nsp31516F1516LTtcCtc4448B.1.20.000387
ORF1ab/nsp31516F1516LTtCCtT248B.1.20.000018
ORF1ab/nsp31516F1516LttCttA248B.1.20.000018
ORF1ab/nsp31516F1516FttCttT4343B.1.1.5190.001708
ORF1ab/nsp31516F1516CtTctGc3738All0.000007
ORF1ab/nsp31516F1516CtTCtGT138All0
ORF1ab/nsp31516F1516FttCttT3838AY.1020.001008
ORF1ab/nsp31516F1516StTctCc3134All0.000006
ORF1ab/nsp31516F1516StTCtCT234All0
ORF1ab/nsp31516F1516StTCtCA134All0
ORF1ab/nsp31516F1516FttCttT2929AY.390.000717
ORF1ab/nsp31516F1516FttCttT2929B.1.5600.134259
ORF1ab/nsp31516F1516FttCttT2828B.1.177.650.018629
ORF1ab/nsp31516F1516LTtcCtc1926B.1.1.70.000017
ORF1ab/nsp31516F1516LttCttG426B.1.1.70.000004
ORF1ab/nsp31516F1516LttCttA326B.1.1.70.000003
ORF1ab/nsp31516F1516FttCttT2626B.1.5260.000611
ORF1ab/nsp31516F1516LTtcCtc2626B.1.5950.006785
ORF1ab/nsp31516F1516FttCttT2525C.370.002902
ORF1ab/nsp31516F1516FttCttT2424AY.330.001603
ORF1ab/nsp31516F1516CtTctGc2424AY.440.000146
ORF1ab/nsp31516F1516FttCttT2424AY.620.010458
ORF1ab/nsp31516F1516FttCttT2424B.1.1.2140.001331
ORF1ab/nsp31516F1516YtTctAc2323AY.40.000036
ORF1ab/nsp31516F1516FttCttT2323AY.98.10.001114
ORF1ab/nsp31516F1516FttCttT2222B.1.1600.000686
ORF1ab/nsp31516F1516FttCttT2222B.1.177.820.010501
ORF1ab/nsp31516F1516YtTCtAT1521B.1.1.70.000013
ORF1ab/nsp31516F1516YtTctAc621B.1.1.70.000005
ORF1ab/nsp31516F1516StTctCc2020AY.40.000031
ORF1ab/nsp31516F1516FttCttT2020B.1.5960.001743
ORF1ab/nsp31516F1516FttCttT1919AY.470.000591
ORF1ab/nsp31516F1516FttCttT1919B.1.1.370.003664
ORF1ab/nsp31516F1516FttCttT1818B.1.177.830.026667
ORF1ab/nsp31516F1516FttCttT1717AY.200.000661
ORF1ab/nsp31516F1516FttCttT1717P.1.140.000813
ORF1ab/nsp31516F1516FttCttT1616AY.50.00033
ORF1ab/nsp31516F1516FttCttT1616B.1.2430.001113
ORF1ab/nsp31516F1516FttCttT1515AY.460.001561
ORF1ab/nsp31516F1516FttCttT1515AY.610.001572
ORF1ab/nsp31516F1516FttCttT1515B.1.2400.003233
ORF1ab/nsp31516F1516FttCttT1414AY.420.000563
ORF1ab/nsp31516F1516FttCttT1414B.1.4690.050542
ORF1ab/nsp31516F1516delTTC---1313B.1.1.70.000012
ORF1ab/nsp31516F1516FttCttT1313B.1.177.810.002461
ORF1ab/nsp31516F1516FttCttT1313B.1.2340.001715
ORF1ab/nsp31516F1516FttCttT1212B.1.617.10.001548
ORF1ab/nsp31516F1516FttCttT1212Q.10.001516
ORF1ab/nsp31516F1516FttCttT1111AY.750.000616
ORF1ab/nsp31516F1516FttCttT1111AY.9.10.000921
ORF1ab/nsp31516F1516FttCttT1111B.1.1.1530.012048
ORF1ab/nsp31516F1516FttCttT1111B.1.390.042969
ORF1ab/nsp31516F1516LTtcCtc911B.1.617.20.000034
ORF1ab/nsp31516F1516LttCttA111B.1.617.20.000004
ORF1ab/nsp31516F1516LttCttG111B.1.617.20.000004
ORF1ab/nsp31516F1516FttCttT1111Q.30.001595
ORF1ab/nsp31516F1516VTtcGtc910All0.000002
ORF1ab/nsp31516F1516VTtCGtT110All0
ORF1ab/nsp31516F1516FttCttT1010AY.1000.00046
ORF1ab/nsp31516F1516FttCttT1010AY.39.10.000396
ORF1ab/nsp31516F1516FttCttT1010B.1.351.20.003026
ORF1ab/nsp31516F1516FttCttT1010B.1.4270.000505
ORF1ab/nsp31516F1516FttCttT99AY.1140.00208
ORF1ab/nsp31516F1516FttCttT99AY.1160.002581
ORF1ab/nsp31516F1516FttCttT99AY.1180.000564
ORF1ab/nsp31516F1516FttCttT99AY.1190.000318
ORF1ab/nsp31516F1516LTtcCtc79AY.40.000011
ORF1ab/nsp31516F1516LttCttA29AY.40.000003
ORF1ab/nsp31516F1516FttCttT99AY.450.001095
ORF1ab/nsp31516F1516FttCttT88AY.130.001288
ORF1ab/nsp31516F1516FttCttT88AY.230.000558
ORF1ab/nsp31516F1516FttCttT88B.1.4090.00625
ORF1ab/nsp31516F1516FttCttT77AY.1060.002344
ORF1ab/nsp31516F1516FttCttT77AY.480.003256
ORF1ab/nsp31516F1516FttCttT77AY.9.20.000257
ORF1ab/nsp31516F1516FttCttT77B.1.2580.000466
ORF1ab/nsp31516F1516FttCttT77B.1.466.20.002739
ORF1ab/nsp31516F1516FttCttT66AY.1170.000507
ORF1ab/nsp31516F1516FttCttT66AY.870.004996
ORF1ab/nsp31516F1516FttCttT66AY.950.004566
ORF1ab/nsp31516F1516FttCttT66B.1.1.2260.034884
ORF1ab/nsp31516F1516FttCttT66B.1.4000.002574
ORF1ab/nsp31516F1516delTTC---66B.1.617.20.000023
ORF1ab/nsp31516F1516FttCttT66B.1.6210.000531
ORF1ab/nsp31516F1516FttCttT55A.2.50.002495
ORF1ab/nsp31516F1516FttCttT55AY.1100.000563
ORF1ab/nsp31516F1516FttCttT55AY.29.10.001103
ORF1ab/nsp31516F1516FttCttT55AY.34.10.00255
ORF1ab/nsp31516F1516FttCttT55AY.4.50.000537
ORF1ab/nsp31516F1516LTtcCtc55AY.540.000477
ORF1ab/nsp31516F1516FttCttT55AY.980.000395
ORF1ab/nsp31516F1516FttCttT55B.1.1.2770.003794
ORF1ab/nsp31516F1516FttCttT55B.1.1.280.001556
ORF1ab/nsp31516F1516FttCttT55B.1.1.4340.001743
ORF1ab/nsp31516F1516FttCttT55B.1.1.500.003394
ORF1ab/nsp31516F1516FttCttT55B.1.177.600.001092
ORF1ab/nsp31516F1516FttCttT55B.1.2210.000355
ORF1ab/nsp31516F1516LttCttA35B.1.5610.001191
ORF1ab/nsp31516F1516LTtcCtc25B.1.5610.000794
ORF1ab/nsp31516F1516FttCttT55B.1.5750.001517
ORF1ab/nsp31516F1516FttCttT55B.1.5970.023148
ORF1ab/nsp31516F1516CtTctGc55B.1.617.20.000019
ORF1ab/nsp31516F1516FttCttT55B.1.621.10.002529
ORF1ab/nsp31516F1516FttCttT55B.1.6370.000365
ORF1ab/nsp31516F1516FttCttT55D.20.000375
ORF1ab/nsp31516F1516LttCttA35P.1.10.000953
ORF1ab/nsp31516F1516LttCttG25P.1.10.000635
ORF1ab/nsp31516F1516ITtcAtc44All0.000001
ORF1ab/nsp31516F1516FttCttT44AY.1090.002959
ORF1ab/nsp31516F1516FttCttT44AY.46.20.002541
ORF1ab/nsp31516F1516FttCttT44AY.5.30.00135
ORF1ab/nsp31516F1516FttCttT44AY.680.001095
ORF1ab/nsp31516F1516FttCttT44AY.690.000747
ORF1ab/nsp31516F1516FttCttT44AY.7.20.002237
ORF1ab/nsp31516F1516FttCttT44AY.920.001149
ORF1ab/nsp31516F1516delTTC---44B.10.000037
ORF1ab/nsp31516F1516delTTC---44B.1.10.000073
ORF1ab/nsp31516F1516FttCttT44B.1.1.2220.000816
ORF1ab/nsp31516F1516FttCttT44B.1.1.2740.020202
ORF1ab/nsp31516F1516FttCttT44B.1.1.2840.00043
ORF1ab/nsp31516F1516FttCttT44B.1.1.3480.003185
ORF1ab/nsp31516F1516FttCttT44B.1.177.40.000844
ORF1ab/nsp31516F1516FttCttT44B.1.3180.153846
ORF1ab/nsp31516F1516FttCttT44B.1.4020.039216
ORF1ab/nsp31516F1516FttCttT44B.1.4560.013072
ORF1ab/nsp31516F1516LTtcCtc44B.1.5670.013333
ORF1ab/nsp31516F1516FttCttT44P.1.120.001936
ORF1ab/nsp31516F1516FttCttT44P.1.150.000929
ORF1ab/nsp31516F1516FttCttT44P.20.000747
ORF1ab/nsp31516F1516FttCttT44Q.80.00066
ORF1ab/nsp31516F1516FttCttT33A.10.000846
ORF1ab/nsp31516F1516del1Ttc-tc23All0
ORF1ab/nsp31516F1516del1ttCtt-13All0
ORF1ab/nsp31516F1516FttCttT33AY.1010.001471
ORF1ab/nsp31516F1516FttCttT33AY.1210.000406
ORF1ab/nsp31516F1516FttCttT33AY.3.10.000256
ORF1ab/nsp31516F1516LTtcCtc23AY.440.000012
ORF1ab/nsp31516F1516LttCttA13AY.440.000006
ORF1ab/nsp31516F1516FttCttT33AY.46.60.000217
ORF1ab/nsp31516F1516FttCttT33AY.530.000863
ORF1ab/nsp31516F1516FttCttT33AY.80.001818
ORF1ab/nsp31516F1516FttCttT33AY.840.001312
ORF1ab/nsp31516F1516FttCttT33B.1.1.3060.001315
ORF1ab/nsp31516F1516FttCttT33B.1.1.330.001263
ORF1ab/nsp31516F1516LTtcCtc33B.1.1.3760.017857
ORF1ab/nsp31516F1516FttCttT33B.1.1.4860.004732
ORF1ab/nsp31516F1516delTTC---33B.1.1770.00004
ORF1ab/nsp31516F1516FttCttT33B.1.177.770.002179
ORF1ab/nsp31516F1516FttCttT33B.1.220.003953
ORF1ab/nsp31516F1516FttCttT33B.1.258.170.000312
ORF1ab/nsp31516F1516FttCttT33B.1.36.380.004926
ORF1ab/nsp31516F1516FttCttT33B.1.4060.018182
ORF1ab/nsp31516F1516delTTC---33B.1.4110.011111
ORF1ab/nsp31516F1516FttCttT33B.1.429.10.036145
ORF1ab/nsp31516F1516FttCttT33Q.40.001364
ORF1ab/nsp31516F1516FttCttT33R.10.00027
ORF1ab/nsp31516F1516StTctCc220.111111
ORF1ab/nsp31516F1516FttCttT220.111111
ORF1ab/nsp31516F1516delTTC---220.111111
ORF1ab/nsp31516F1516LttCttA220.111111
ORF1ab/nsp31516F1516VTtcGtc120.055556
ORF1ab/nsp31516F1516VTtCGtT120.055556
ORF1ab/nsp31516F1516FttCttT22A0.000774
ORF1ab/nsp31516F1516FttCttT22A.2.5.30.020619
ORF1ab/nsp31516F1516FttCttT22AY.320.001065
ORF1ab/nsp31516F1516FttCttT22AY.340.000194
ORF1ab/nsp31516F1516delTTC---22AY.40.000003
ORF1ab/nsp31516F1516CtTctGc22AY.40.000003
ORF1ab/nsp31516F1516FttCttT22AY.4.2.10.000298
ORF1ab/nsp31516F1516FttCttT22AY.4.40.000818
ORF1ab/nsp31516F1516delTTC---22AY.420.00008
ORF1ab/nsp31516F1516delTTC---22AY.430.000009
ORF1ab/nsp31516F1516FttCttT22AY.46.10.002053
ORF1ab/nsp31516F1516FttCttT22AY.540.000191
ORF1ab/nsp31516F1516FttCttT22AY.560.00321
ORF1ab/nsp31516F1516FttCttT22AY.60.000082
ORF1ab/nsp31516F1516FttCttT22AY.7.10.000225
ORF1ab/nsp31516F1516StTctCc22AY.770.002255
ORF1ab/nsp31516F1516FttCttT22AY.790.002421
ORF1ab/nsp31516F1516delTTC---22AY.9.20.000073
ORF1ab/nsp31516F1516FttCttT22AY.930.000546
ORF1ab/nsp31516F1516FttCttT22AY.99.20.000184
ORF1ab/nsp31516F1516delTTC---22B.1.1.2180.015385
ORF1ab/nsp31516F1516FttCttT22B.1.1.2400.00939
ORF1ab/nsp31516F1516LTtcCtc22B.1.1.2770.001517
ORF1ab/nsp31516F1516FttCttT22B.1.1.3180.000604
ORF1ab/nsp31516F1516FttCttT22B.1.1.3220.017544
ORF1ab/nsp31516F1516FttCttT22B.1.1.3270.2
ORF1ab/nsp31516F1516FttCttT22B.1.1.3440.021505
ORF1ab/nsp31516F1516FttCttT22B.1.1.3590.055556
ORF1ab/nsp31516F1516FttCttT22B.1.1.3680.006173
ORF1ab/nsp31516F1516FttCttT22B.1.1.4480.004065
ORF1ab/nsp31516F1516FttCttT22B.1.1.4850.033333
ORF1ab/nsp31516F1516CtTctGc22B.1.1.70.000002
ORF1ab/nsp31516F1516StTctCc12B.1.1.70.000001
ORF1ab/nsp31516F1516StTCtCT12B.1.1.70.000001
ORF1ab/nsp31516F1516FttCttT22B.1.1.830.00542
ORF1ab/nsp31516F1516FttCttT22B.1.1280.001271
ORF1ab/nsp31516F1516FttCttT22B.1.1420.005797
ORF1ab/nsp31516F1516FttCttT22B.1.1660.016949
ORF1ab/nsp31516F1516FttCttT22B.1.177.120.000303
ORF1ab/nsp31516F1516delTTC---22B.1.177.620.002384
ORF1ab/nsp31516F1516FttCttT22B.1.177.70.00033
ORF1ab/nsp31516F1516FttCttT22B.1.3110.000549
ORF1ab/nsp31516F1516FttCttT22B.1.36.290.001035
ORF1ab/nsp31516F1516FttCttT22B.1.36.70.008
ORF1ab/nsp31516F1516FttCttT22B.1.36.80.002
ORF1ab/nsp31516F1516FttCttT22B.1.438.10.000215
ORF1ab/nsp31516F1516FttCttT22B.1.4620.014493
ORF1ab/nsp31516F1516FttCttT22B.1.5250.000226
ORF1ab/nsp31516F1516FttCttT22B.1.5680.002222
ORF1ab/nsp31516F1516FttCttT22B.1.5880.00182
ORF1ab/nsp31516F1516LttCttA12B.1.5960.000087
ORF1ab/nsp31516F1516LTtcCtc12B.1.5960.000087
ORF1ab/nsp31516F1516delTTC---22B.1.617.10.000258
ORF1ab/nsp31516F1516FttCttT22B.1.6180.008065
ORF1ab/nsp31516F1516FttCttT22N.100.058824
ORF1ab/nsp31516F1516FttCttT22P.40.007605
ORF1ab/nsp31516F1516FttCttT11A.2.20.001689
ORF1ab/nsp31516F1516FttCttT11A.270.001656
ORF1ab/nsp31516F1516FttCttT11AD.20.000219
ORF1ab/nsp31516F1516delTTC---11AD.20.000219
ORF1ab/nsp31516F1516del2tTCt--11All0
ORF1ab/nsp31516F1516TTTcACc11All0
ORF1ab/nsp31516F1516XtTCtAG11All0
ORF1ab/nsp31516F1516FttCttT11AM.40.003571
ORF1ab/nsp31516F1516FttCttT11AP.10.001502
ORF1ab/nsp31516F1516FttCttT11AV.10.005051
ORF1ab/nsp31516F1516FttCttT11AY.10.000396
ORF1ab/nsp31516F1516CtTctGc11AY.1000.000046
ORF1ab/nsp31516F1516delTTC---11AY.1010.00049
ORF1ab/nsp31516F1516FttCttT11AY.1130.000142
ORF1ab/nsp31516F1516FttCttT11AY.116.10.000311
ORF1ab/nsp31516F1516delTTC---11AY.1200.000037
ORF1ab/nsp31516F1516ITtcAtc11AY.1200.000037
ORF1ab/nsp31516F1516FttCttT11AY.140.000088
ORF1ab/nsp31516F1516FttCttT11AY.160.00038
ORF1ab/nsp31516F1516FttCttT11AY.190.00114
ORF1ab/nsp31516F1516FttCttT11AY.20.000356
ORF1ab/nsp31516F1516FttCttT11AY.220.002092
ORF1ab/nsp31516F1516FttCttT11AY.23.10.000417
ORF1ab/nsp31516F1516FttCttT11AY.240.000431
ORF1ab/nsp31516F1516delTTC---11AY.250.000006
ORF1ab/nsp31516F1516VTtcGtc11AY.260.000028
ORF1ab/nsp31516F1516FttCttT11AY.270.000065
ORF1ab/nsp31516F1516LTtcCtc11AY.270.000065
ORF1ab/nsp31516F1516VTtcGtc11AY.290.000016
ORF1ab/nsp31516F1516LTtcCtc11AY.290.000016
ORF1ab/nsp31516F1516FttCttT11AY.360.000148
ORF1ab/nsp31516F1516delTTC---11AY.360.000148
ORF1ab/nsp31516F1516LTtcCtc11AY.360.000148
ORF1ab/nsp31516F1516FttCttT11AY.380.000499
ORF1ab/nsp31516F1516LttCttA11AY.390.000025
ORF1ab/nsp31516F1516VTtcGtc11AY.39.10.00004
ORF1ab/nsp31516F1516VTtcGtc11AY.40.000002
ORF1ab/nsp31516F1516delTTC---11AY.4.30.000842
ORF1ab/nsp31516F1516FttCttT11AY.4.30.000842
ORF1ab/nsp31516F1516delTTC---11AY.4.50.000107
ORF1ab/nsp31516F1516CtTctGc11AY.430.000004
ORF1ab/nsp31516F1516StTctCc11AY.430.000004
ORF1ab/nsp31516F1516YtTctAc11AY.430.000004
ORF1ab/nsp31516F1516LTtcCtc11AY.430.000004
ORF1ab/nsp31516F1516StTctCc11AY.440.000006
ORF1ab/nsp31516F1516delTTC---11AY.440.000006
ORF1ab/nsp31516F1516XtTCtAG11AY.460.000104
ORF1ab/nsp31516F1516FttCttT11AY.46.40.000165
ORF1ab/nsp31516F1516VTtcGtc11AY.46.60.000072
ORF1ab/nsp31516F1516LttCttA11AY.490.003195
ORF1ab/nsp31516F1516delTTC---11AY.50.000021
ORF1ab/nsp31516F1516del1ttCtt-11AY.540.000095
ORF1ab/nsp31516F1516YtTctAc11AY.540.000095
ORF1ab/nsp31516F1516FttCttT11AY.550.000917
ORF1ab/nsp31516F1516FttCttT11AY.570.000656
ORF1ab/nsp31516F1516FttCttT11AY.590.00053
ORF1ab/nsp31516F1516FttCttT11AY.630.000387
ORF1ab/nsp31516F1516delTTC---11AY.660.00107
ORF1ab/nsp31516F1516FttCttT11AY.660.00107
ORF1ab/nsp31516F1516StTCtCA11AY.670.000464
ORF1ab/nsp31516F1516FttCttT11AY.670.000464
ORF1ab/nsp31516F1516del1Ttc-tc11AY.670.000464
ORF1ab/nsp31516F1516FttCttT11AY.70.000196
ORF1ab/nsp31516F1516FttCttT11AY.710.000475
ORF1ab/nsp31516F1516FttCttT11AY.740.000116
ORF1ab/nsp31516F1516FttCttT11AY.760.004831
ORF1ab/nsp31516F1516delTTC---11AY.760.004831
ORF1ab/nsp31516F1516FttCttT11AY.770.001127
ORF1ab/nsp31516F1516delTTC---11AY.840.000437
ORF1ab/nsp31516F1516FttCttT11AY.890.004902
ORF1ab/nsp31516F1516FttCttT11AY.900.000684
ORF1ab/nsp31516F1516FttCttT11AY.940.000443
ORF1ab/nsp31516F1516delTTC---11AY.990.001049
ORF1ab/nsp31516F1516FttCttT11B0.000128
ORF1ab/nsp31516F1516YtTctAc11B.10.000009
ORF1ab/nsp31516F1516CtTCtGT11B.10.000009
ORF1ab/nsp31516F1516LttCttA11B.1.10.000018
ORF1ab/nsp31516F1516FttCttT11B.1.1.100.001115
ORF1ab/nsp31516F1516FttCttT11B.1.1.1170.009709
ORF1ab/nsp31516F1516StTctCc11B.1.1.1280.007092
ORF1ab/nsp31516F1516FttCttT11B.1.1.2160.00089
ORF1ab/nsp31516F1516FttCttT11B.1.1.2270.004348
ORF1ab/nsp31516F1516FttCttT11B.1.1.250.000569
ORF1ab/nsp31516F1516FttCttT11B.1.1.2610.008621
ORF1ab/nsp31516F1516FttCttT11B.1.1.2790.001121
ORF1ab/nsp31516F1516FttCttT11B.1.1.2940.001266
ORF1ab/nsp31516F1516FttCttT11B.1.1.2980.000862
ORF1ab/nsp31516F1516LTtcCtc11B.1.1.3060.000438
ORF1ab/nsp31516F1516FttCttT11B.1.1.3110.000358
ORF1ab/nsp31516F1516FttCttT11B.1.1.3230.014085
ORF1ab/nsp31516F1516FttCttT11B.1.1.3260.001761
ORF1ab/nsp31516F1516FttCttT11B.1.1.3490.010309
ORF1ab/nsp31516F1516FttCttT11B.1.1.3540.004386
ORF1ab/nsp31516F1516LTtcCtc11B.1.1.3680.003086
ORF1ab/nsp31516F1516delTTC---11B.1.1.370.000193
ORF1ab/nsp31516F1516LTtcCtc11B.1.1.3770.001381
ORF1ab/nsp31516F1516FttCttT11B.1.1.3880.045455
ORF1ab/nsp31516F1516FttCttT11B.1.1.3890.006061
ORF1ab/nsp31516F1516FttCttT11B.1.1.3980.003226
ORF1ab/nsp31516F1516FttCttT11B.1.1.4030.025641
ORF1ab/nsp31516F1516FttCttT11B.1.1.4320.001266
ORF1ab/nsp31516F1516delTTC---11B.1.1.460.004367
ORF1ab/nsp31516F1516FttCttT11B.1.1.460.004367
ORF1ab/nsp31516F1516FttCttT11B.1.1.4620.008621
ORF1ab/nsp31516F1516delTTC---11B.1.1.4640.001473
ORF1ab/nsp31516F1516FttCttT11B.1.1.4660.008696
ORF1ab/nsp31516F1516FttCttT11B.1.1.470.005348
ORF1ab/nsp31516F1516FttCttT11B.1.1.4870.005587
ORF1ab/nsp31516F1516FttCttT11B.1.1.5170.006803
ORF1ab/nsp31516F1516delTTC---11B.1.1.5250.005464
ORF1ab/nsp31516F1516del1Ttc-tc11B.1.1.70.000001
ORF1ab/nsp31516F1516VTtcGtc11B.1.1.70.000001
ORF1ab/nsp31516F1516FttCttT11B.1.1.700.000341
ORF1ab/nsp31516F1516FttCttT11B.1.1110.001175
ORF1ab/nsp31516F1516FttCttT11B.1.1470.000756
ORF1ab/nsp31516F1516LttCttA11B.1.1600.000031
ORF1ab/nsp31516F1516FttCttT11B.1.160.300.002976
ORF1ab/nsp31516F1516FttCttT11B.1.1730.026316
ORF1ab/nsp31516F1516CtTctGc11B.1.1770.000013
ORF1ab/nsp31516F1516LttCttG11B.1.1770.000013
ORF1ab/nsp31516F1516LttCttA11B.1.177.120.000152
ORF1ab/nsp31516F1516FttCttT11B.1.177.170.000821
ORF1ab/nsp31516F1516YtTctAc11B.1.177.210.000076
ORF1ab/nsp31516F1516FttCttT11B.1.177.210.000076
ORF1ab/nsp31516F1516FttCttT11B.1.177.330.001645
ORF1ab/nsp31516F1516FttCttT11B.1.177.430.001477
ORF1ab/nsp31516F1516FttCttT11B.1.177.500.004695
ORF1ab/nsp31516F1516FttCttT11B.1.177.530.002392
ORF1ab/nsp31516F1516FttCttT11B.1.177.570.000281
ORF1ab/nsp31516F1516LTtcCtc11B.1.177.70.000165
ORF1ab/nsp31516F1516FttCttT11B.1.177.730.000566
ORF1ab/nsp31516F1516FttCttT11B.1.177.750.001041
ORF1ab/nsp31516F1516LttCttA11B.1.177.750.001041
ORF1ab/nsp31516F1516FttCttT11B.1.177.800.001912
ORF1ab/nsp31516F1516FttCttT11B.1.177.860.000183
ORF1ab/nsp31516F1516del2tTCt--11B.1.20.000009
ORF1ab/nsp31516F1516StTCtCT11B.1.20.000009
ORF1ab/nsp31516F1516ITtcAtc11B.1.20.000009
ORF1ab/nsp31516F1516FttCttT11B.1.2060.000816
ORF1ab/nsp31516F1516delTTC---11B.1.2100.002132
ORF1ab/nsp31516F1516FttCttT11B.1.214.20.0006
ORF1ab/nsp31516F1516FttCttT11B.1.2230.002778
ORF1ab/nsp31516F1516FttCttT11B.1.2320.000537
ORF1ab/nsp31516F1516LttCttA11B.1.2580.000067
ORF1ab/nsp31516F1516FttCttT11B.1.258.140.00098
ORF1ab/nsp31516F1516FttCttT11B.1.2600.003344
ORF1ab/nsp31516F1516FttCttT11B.1.3380.008621
ORF1ab/nsp31516F1516VTtcGtc11B.1.3510.00003
ORF1ab/nsp31516F1516LTtcCtc11B.1.3510.00003
ORF1ab/nsp31516F1516FttCttT11B.1.351.30.000876
ORF1ab/nsp31516F1516LTtcCtc11B.1.360.000146
ORF1ab/nsp31516F1516FttCttT11B.1.36.100.004785
ORF1ab/nsp31516F1516FttCttT11B.1.36.170.000494
ORF1ab/nsp31516F1516FttCttT11B.1.36.180.00042
ORF1ab/nsp31516F1516FttCttT11B.1.36.220.001208
ORF1ab/nsp31516F1516LttCttA11B.1.36.350.002604
ORF1ab/nsp31516F1516FttCttT11B.1.36.390.002217
ORF1ab/nsp31516F1516FttCttT11B.1.3620.001541
ORF1ab/nsp31516F1516FttCttT11B.1.3950.007042
ORF1ab/nsp31516F1516delTTC---11B.1.4150.014286
ORF1ab/nsp31516F1516delTTC---11B.1.416.10.001563
ORF1ab/nsp31516F1516FttCttT11B.1.4220.000812
ORF1ab/nsp31516F1516StTctCc11B.1.4290.000024
ORF1ab/nsp31516F1516delTTC---11B.1.4530.003236
ORF1ab/nsp31516F1516VTtcGtc11B.1.466.20.000391
ORF1ab/nsp31516F1516FttCttT11B.1.4680.005714
ORF1ab/nsp31516F1516FttCttT11B.1.5160.001957
ORF1ab/nsp31516F1516FttCttT11B.1.5170.000427
ORF1ab/nsp31516F1516delTTC---11B.1.5260.000024
ORF1ab/nsp31516F1516LTtcCtc11B.1.5260.000024
ORF1ab/nsp31516F1516FttCttT11B.1.5380.008065
ORF1ab/nsp31516F1516FttCttT11B.1.5390.017544
ORF1ab/nsp31516F1516FttCttT11B.1.5510.00129
ORF1ab/nsp31516F1516FttCttT11B.1.5610.000397
ORF1ab/nsp31516F1516ITtcAtc11B.1.564.10.001577
ORF1ab/nsp31516F1516FttCttT11B.1.5650.00081
ORF1ab/nsp31516F1516delTTC---11B.1.575.10.002439
ORF1ab/nsp31516F1516FttCttT11B.1.5770.000687
ORF1ab/nsp31516F1516FttCttT11B.1.5810.009434
ORF1ab/nsp31516F1516FttCttT11B.1.5820.000491
ORF1ab/nsp31516F1516FttCttT11B.1.5950.000261
ORF1ab/nsp31516F1516StTctCc11B.1.5960.000087
ORF1ab/nsp31516F1516FttCttT11B.1.6090.000479
ORF1ab/nsp31516F1516FttCttT11B.1.6120.002653
ORF1ab/nsp31516F1516LTtCCtT11B.1.617.10.000129
ORF1ab/nsp31516F1516StTctCc11B.1.617.20.000004
ORF1ab/nsp31516F1516TTTcACc11B.1.617.20.000004
ORF1ab/nsp31516F1516YtTctAc11B.1.6190.000871
ORF1ab/nsp31516F1516delTTC---11B.1.6210.000089
ORF1ab/nsp31516F1516FttCttT11B.1.6260.005714
ORF1ab/nsp31516F1516FttCttT11B.230.002924
ORF1ab/nsp31516F1516FttCttT11B.40.002208
ORF1ab/nsp31516F1516FttCttT11B.400.000364
ORF1ab/nsp31516F1516LttCttA11C.160.00106
ORF1ab/nsp31516F1516ITtcAtc11C.350.000774
ORF1ab/nsp31516F1516FttCttT11C.360.000911
ORF1ab/nsp31516F1516FttCttT11C.37.10.002618
ORF1ab/nsp31516F1516YtTctAc11P.10.000016
ORF1ab/nsp31516F1516CtTctGc11P.10.000016
ORF1ab/nsp31516F1516delTTC---11P.1.150.000232
ORF1ab/nsp31516F1516FttCttT11P.1.160.000374
ORF1ab/nsp31516F1516FttCttT11P.1.70.000319
ORF1ab/nsp31516F1516FttCttT11P.1.90.004808
ORF1ab/nsp31516F1516FttCttT11Q.20.000613
ORF1ab/nsp31516F1516FttCttT11Q.50.016949