CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1516 | F1516F | F2334F | syn | ttC | ttT | 9142 | 9142 | 1 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516L | F2334L | nonsyn | Ttc | Ctc | 539 | 497 | 0.922078 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516L | F2334L | nonsyn | ttC | ttA | 539 | 30 | 0.0556586 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516L | F2334L | nonsyn | ttC | ttG | 539 | 9 | 0.0166976 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516L | F2334L | nonsyn | TtC | CtT | 539 | 3 | 0.00556586 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516del | F2334del | del | TTC | --- | 74 | 74 | 1 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516Y | F2334Y | nonsyn | tTc | tAc | 50 | 35 | 0.7 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516Y | F2334Y | nonsyn | tTC | tAT | 50 | 15 | 0.3 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516C | F2334C | nonsyn | tTc | tGc | 38 | 37 | 0.973684 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516C | F2334C | nonsyn | tTC | tGT | 38 | 1 | 0.0263158 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516S | F2334S | nonsyn | tTc | tCc | 34 | 31 | 0.911765 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516S | F2334S | nonsyn | tTC | tCT | 34 | 2 | 0.0588235 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516S | F2334S | nonsyn | tTC | tCA | 34 | 1 | 0.0294118 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516V | F2334V | nonsyn | Ttc | Gtc | 10 | 9 | 0.9 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516V | F2334V | nonsyn | TtC | GtT | 10 | 1 | 0.1 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516I | F2334I | nonsyn | Ttc | Atc | 4 | 4 | 1 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516del1 | F2334del1 | del | Ttc | -tc | 3 | 2 | 0.666667 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516del1 | F2334del1 | del | ttC | tt- | 3 | 1 | 0.333333 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516T | F2334T | nonsyn | TTc | ACc | 1 | 1 | 1 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516del2 | F2334del2 | del | tTC | t-- | 1 | 1 | 1 | 7265-7267 |
ORF1ab/nsp3 | 1516 | F1516X | F2334X | nonsyn | tTC | tAG | 1 | 1 | 1 | 7265-7267 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 9142 | 9142 | All | 0.001749 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1307 | 1307 | B.1.1.7 | 0.00117 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 931 | 931 | B.1.177 | 0.012259 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 826 | 826 | B.1.2 | 0.007273 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 724 | 724 | AY.4 | 0.001127 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 497 | 539 | All | 0.000095 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 30 | 539 | All | 0.000006 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttG | 9 | 539 | All | 0.000002 |
ORF1ab/nsp3 | 1516 | F1516L | TtC | CtT | 3 | 539 | All | 0.000001 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 496 | 496 | AY.43 | 0.002198 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 472 | 472 | B.1.1.302 | 0.979253 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 471 | 471 | B.1.617.2 | 0.001774 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 458 | 458 | AY.4.2 | 0.009933 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 313 | 313 | B.1.588 | 0.284804 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 291 | 291 | B.1.351 | 0.00865 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 253 | 253 | B.1.258.3 | 0.423786 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 236 | 236 | AY.44 | 0.001436 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 227 | 227 | P.1 | 0.003576 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 192 | 192 | B.1.1 | 0.003483 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 128 | 128 | B.1.429 | 0.003012 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 126 | 126 | AY.103 | 0.000782 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 100 | 100 | B.1 | 0.000916 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 93 | 93 | B.1.628 | 0.03277 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 85 | 85 | AY.3 | 0.000845 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 81 | 81 | B.1.509 | 0.07013 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 79 | 79 | AY.25 | 0.000475 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 74 | 74 | All | 0.000014 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 69 | 69 | AY.120 | 0.002565 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 64 | 64 | B.1.177.68 | 0.969697 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 57 | 57 | B.1.36 | 0.008316 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 49 | 53 | B.1 | 0.000449 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 3 | 53 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttG | 1 | 53 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1516 | F1516Y | tTc | tAc | 35 | 50 | All | 0.000007 |
ORF1ab/nsp3 | 1516 | F1516Y | tTC | tAT | 15 | 50 | All | 0.000003 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 50 | 50 | AY.26 | 0.001416 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 49 | 49 | AY.29 | 0.000773 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 44 | 48 | B.1.2 | 0.000387 |
ORF1ab/nsp3 | 1516 | F1516L | TtC | CtT | 2 | 48 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 2 | 48 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 43 | 43 | B.1.1.519 | 0.001708 |
ORF1ab/nsp3 | 1516 | F1516C | tTc | tGc | 37 | 38 | All | 0.000007 |
ORF1ab/nsp3 | 1516 | F1516C | tTC | tGT | 1 | 38 | All | 0 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 38 | 38 | AY.102 | 0.001008 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 31 | 34 | All | 0.000006 |
ORF1ab/nsp3 | 1516 | F1516S | tTC | tCT | 2 | 34 | All | 0 |
ORF1ab/nsp3 | 1516 | F1516S | tTC | tCA | 1 | 34 | All | 0 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 29 | 29 | AY.39 | 0.000717 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 29 | 29 | B.1.560 | 0.134259 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 28 | 28 | B.1.177.65 | 0.018629 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 19 | 26 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttG | 4 | 26 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 3 | 26 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 26 | 26 | B.1.526 | 0.000611 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 26 | 26 | B.1.595 | 0.006785 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 25 | 25 | C.37 | 0.002902 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 24 | 24 | AY.33 | 0.001603 |
ORF1ab/nsp3 | 1516 | F1516C | tTc | tGc | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 24 | 24 | AY.62 | 0.010458 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 24 | 24 | B.1.1.214 | 0.001331 |
ORF1ab/nsp3 | 1516 | F1516Y | tTc | tAc | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 23 | 23 | AY.98.1 | 0.001114 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 22 | 22 | B.1.160 | 0.000686 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 22 | 22 | B.1.177.82 | 0.010501 |
ORF1ab/nsp3 | 1516 | F1516Y | tTC | tAT | 15 | 21 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 1516 | F1516Y | tTc | tAc | 6 | 21 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 20 | 20 | B.1.596 | 0.001743 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 19 | 19 | AY.47 | 0.000591 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 19 | 19 | B.1.1.37 | 0.003664 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 18 | 18 | B.1.177.83 | 0.026667 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 17 | 17 | AY.20 | 0.000661 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 17 | 17 | P.1.14 | 0.000813 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 16 | 16 | AY.5 | 0.00033 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 16 | 16 | B.1.243 | 0.001113 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 15 | 15 | AY.46 | 0.001561 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 15 | 15 | AY.61 | 0.001572 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 15 | 15 | B.1.240 | 0.003233 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 14 | 14 | B.1.469 | 0.050542 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 13 | 13 | B.1.177.81 | 0.002461 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 13 | 13 | B.1.234 | 0.001715 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 12 | 12 | B.1.617.1 | 0.001548 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 12 | 12 | Q.1 | 0.001516 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 11 | 11 | AY.75 | 0.000616 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 11 | 11 | AY.9.1 | 0.000921 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 11 | 11 | B.1.1.153 | 0.012048 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 11 | 11 | B.1.39 | 0.042969 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 9 | 11 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttG | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 11 | 11 | Q.3 | 0.001595 |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 9 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1516 | F1516V | TtC | GtT | 1 | 10 | All | 0 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 10 | 10 | B.1.351.2 | 0.003026 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 9 | 9 | AY.114 | 0.00208 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 9 | 9 | AY.116 | 0.002581 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 7 | 9 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 2 | 9 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 8 | 8 | AY.13 | 0.001288 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 8 | 8 | B.1.409 | 0.00625 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 7 | 7 | AY.48 | 0.003256 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 6 | 6 | AY.87 | 0.004996 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 6 | 6 | AY.95 | 0.004566 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 6 | 6 | B.1.1.226 | 0.034884 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 6 | 6 | B.1.400 | 0.002574 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | AY.29.1 | 0.001103 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | AY.34.1 | 0.00255 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.1.277 | 0.003794 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.1.50 | 0.003394 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 3 | 5 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 2 | 5 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.597 | 0.023148 |
ORF1ab/nsp3 | 1516 | F1516C | tTc | tGc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.621.1 | 0.002529 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 3 | 5 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttG | 2 | 5 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 1516 | F1516I | Ttc | Atc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | AY.109 | 0.002959 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | AY.46.2 | 0.002541 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | AY.68 | 0.001095 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | AY.7.2 | 0.002237 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | B.1.1.274 | 0.020202 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | B.1.318 | 0.153846 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | B.1.402 | 0.039216 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | B.1.456 | 0.013072 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 4 | 4 | B.1.567 | 0.013333 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 1516 | F1516del1 | Ttc | -tc | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1516 | F1516del1 | ttC | tt- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | AY.8 | 0.001818 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 3 | 3 | B.1.1.376 | 0.017857 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | B.1.36.38 | 0.004926 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | B.1.406 | 0.018182 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | B.1.429.1 | 0.036145 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1516 | F1516V | TtC | GtT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | A.2.5.3 | 0.020619 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1516 | F1516C | tTc | tGc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 2 | 2 | B.1.1.218 | 0.015385 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.240 | 0.00939 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.322 | 0.017544 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.327 | 0.2 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.344 | 0.021505 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.359 | 0.055556 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.485 | 0.033333 |
ORF1ab/nsp3 | 1516 | F1516C | tTc | tGc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1516 | F1516S | tTC | tCT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.1.83 | 0.00542 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.142 | 0.005797 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.166 | 0.016949 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.36.7 | 0.008 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 2 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | N.10 | 0.058824 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1516 | F1516del2 | tTC | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1516 | F1516T | TTc | ACc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1516 | F1516X | tTC | tAG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1516 | F1516C | tTc | tGc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1516 | F1516I | Ttc | Atc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1516 | F1516C | tTc | tGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1516 | F1516Y | tTc | tAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1516 | F1516X | tTC | tAG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1516 | F1516del1 | ttC | tt- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1516 | F1516Y | tTc | tAc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1516 | F1516S | tTC | tCA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1516 | F1516del1 | Ttc | -tc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1516 | F1516Y | tTc | tAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1516 | F1516C | tTC | tGT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.323 | 0.014085 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.388 | 0.045455 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.403 | 0.025641 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1516 | F1516del1 | Ttc | -tc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.173 | 0.026316 |
ORF1ab/nsp3 | 1516 | F1516C | tTc | tGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1516 | F1516Y | tTc | tAc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1516 | F1516del2 | tTC | t-- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1516 | F1516S | tTC | tCT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1516 | F1516I | Ttc | Atc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1516 | F1516V | Ttc | Gtc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1516 | F1516L | Ttc | Ctc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.539 | 0.017544 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1516 | F1516I | Ttc | Atc | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1516 | F1516L | TtC | CtT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1516 | F1516S | tTc | tCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1516 | F1516T | TTc | ACc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1516 | F1516Y | tTc | tAc | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1516 | F1516L | ttC | ttA | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1516 | F1516I | Ttc | Atc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 1516 | F1516Y | tTc | tAc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1516 | F1516C | tTc | tGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1516 | F1516del | TTC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1516 | F1516F | ttC | ttT | 1 | 1 | Q.5 | 0.016949 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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