CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1512

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31512A1512SA2330SnonsynGcaTca2622600.9923667253-7255
ORF1ab/nsp31512A1512SA2330SnonsynGcATcG26210.003816797253-7255
ORF1ab/nsp31512A1512SA2330SnonsynGcATcC26210.003816797253-7255
ORF1ab/nsp31512A1512AA2330AsyngcAgcG1521080.7105267253-7255
ORF1ab/nsp31512A1512AA2330AsyngcAgcT152310.2039477253-7255
ORF1ab/nsp31512A1512AA2330AsyngcAgcC152130.08552637253-7255
ORF1ab/nsp31512A1512delA2330deldelGCA---777717253-7255
ORF1ab/nsp31512A1512EA2330EnonsyngCagAa48470.9791677253-7255
ORF1ab/nsp31512A1512EA2330EnonsyngCAgAG4810.02083337253-7255
ORF1ab/nsp31512A1512GA2330GnonsyngCagGa25220.887253-7255
ORF1ab/nsp31512A1512GA2330GnonsyngCAgGC2520.087253-7255
ORF1ab/nsp31512A1512GA2330GnonsyngCAgGG2510.047253-7255
ORF1ab/nsp31512A1512VA2330VnonsyngCagTa24210.8757253-7255
ORF1ab/nsp31512A1512VA2330VnonsyngCAgTT2420.08333337253-7255
ORF1ab/nsp31512A1512VA2330VnonsyngCAgTC2410.04166677253-7255
ORF1ab/nsp31512A1512del1A2330del1delgcAgc-17140.8235297253-7255
ORF1ab/nsp31512A1512del1A2330del1delGca-ca1720.1176477253-7255
ORF1ab/nsp31512A1512del1A2330del1delGCA-TC1710.05882357253-7255
ORF1ab/nsp31512A1512TA2330TnonsynGcaAca121217253-7255
ORF1ab/nsp31512A1512RA2330RnonsynGCaAGa430.757253-7255
ORF1ab/nsp31512A1512RA2330RnonsynGCAAGG410.257253-7255
ORF1ab/nsp31512A1512PA2330PnonsynGcaCca3317253-7255
ORF1ab/nsp31512A1512XA2330XnonsynGCaTAa310.3333337253-7255
ORF1ab/nsp31512A1512XA2330XnonsynGCATAG310.3333337253-7255
ORF1ab/nsp31512A1512XA2330XnonsynGCaTGa310.3333337253-7255
ORF1ab/nsp31512A1512IA2330InonsynGCaATa2217253-7255
ORF1ab/nsp31512A1512MA2330MnonsynGCAATG2217253-7255
ORF1ab/nsp31512A1512LA2330LnonsynGCaTTa2217253-7255
ORF1ab/nsp31512A1512DA2330DnonsyngCAgAC1117253-7255
ORF1ab/nsp31512A1512QA2330QnonsynGCaCAa1117253-7255
ORF1ab/nsp31512A1512CA2330CnonsynGCATGC1117253-7255
ORF1ab/nsp31512A1512WA2330WnonsynGCATGG1117253-7255
ORF1ab/nsp31512A1512KA2330KnonsynGCaAAa1117253-7255
ORF1ab/nsp31512A1512YA2330YnonsynGCATAC1117253-7255

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31512A1512SGcaTca260262All0.00005
ORF1ab/nsp31512A1512SGcATcC1262All0
ORF1ab/nsp31512A1512SGcATcG1262All0
ORF1ab/nsp31512A1512AgcAgcG108152All0.000021
ORF1ab/nsp31512A1512AgcAgcT31152All0.000006
ORF1ab/nsp31512A1512AgcAgcC13152All0.000002
ORF1ab/nsp31512A1512SGcaTca108108AY.40.000168
ORF1ab/nsp31512A1512SGcaTca8989B.1.5910.946809
ORF1ab/nsp31512A1512delGCA---7777All0.000015
ORF1ab/nsp31512A1512EgCagAa4748All0.000009
ORF1ab/nsp31512A1512EgCAgAG148All0
ORF1ab/nsp31512A1512AgcAgcG1830B.1.1.70.000016
ORF1ab/nsp31512A1512AgcAgcT1030B.1.1.70.000009
ORF1ab/nsp31512A1512AgcAgcC230B.1.1.70.000002
ORF1ab/nsp31512A1512GgCagGa2225All0.000004
ORF1ab/nsp31512A1512GgCAgGC225All0
ORF1ab/nsp31512A1512GgCAgGG125All0
ORF1ab/nsp31512A1512VgCagTa2124All0.000004
ORF1ab/nsp31512A1512VgCAgTT224All0
ORF1ab/nsp31512A1512VgCAgTC124All0
ORF1ab/nsp31512A1512EgCagAa1919AY.40.00003
ORF1ab/nsp31512A1512AgcAgcG1318AY.40.00002
ORF1ab/nsp31512A1512AgcAgcT518AY.40.000008
ORF1ab/nsp31512A1512del1gcAgc-1417All0.000003
ORF1ab/nsp31512A1512del1Gca-ca217All0
ORF1ab/nsp31512A1512del1GCA-TC117All0
ORF1ab/nsp31512A1512delGCA---1717B.1.1.70.000015
ORF1ab/nsp31512A1512AgcAgcG1313AY.250.000078
ORF1ab/nsp31512A1512EgCagAa1313AY.4.50.001397
ORF1ab/nsp31512A1512SGcaTca1313B.1.617.20.000049
ORF1ab/nsp31512A1512TGcaAca1212All0.000002
ORF1ab/nsp31512A1512AgcAgcG1010B.1.5260.000235
ORF1ab/nsp31512A1512AgcAgcG48AY.1030.000025
ORF1ab/nsp31512A1512AgcAgcC38AY.1030.000019
ORF1ab/nsp31512A1512AgcAgcT18AY.1030.000006
ORF1ab/nsp31512A1512SGcaTca77B.10.000064
ORF1ab/nsp31512A1512delGCA---66B.1.617.20.000023
ORF1ab/nsp31512A1512SGcaTca55AY.1030.000031
ORF1ab/nsp31512A1512GgCagGa55AY.40.000008
ORF1ab/nsp31512A1512VgCagTa45B.10.000037
ORF1ab/nsp31512A1512AgcAgcT25B.10.000018
ORF1ab/nsp31512A1512AgcAgcG25B.10.000018
ORF1ab/nsp31512A1512AgcAgcC15B.10.000009
ORF1ab/nsp31512A1512VgCAgTC15B.10.000009
ORF1ab/nsp31512A1512AgcAgcG55B.1.20.000044
ORF1ab/nsp31512A1512delGCA---440.222222
ORF1ab/nsp31512A1512RGCaAGa34All0.000001
ORF1ab/nsp31512A1512RGCAAGG14All0
ORF1ab/nsp31512A1512AgcAgcG44AY.70.000784
ORF1ab/nsp31512A1512EgCagAa44AY.90.00027
ORF1ab/nsp31512A1512delGCA---44B.10.000037
ORF1ab/nsp31512A1512delGCA---44B.1.10.000073
ORF1ab/nsp31512A1512del1gcAgc-44B.1.20.000035
ORF1ab/nsp31512A1512SGcaTca130.055556
ORF1ab/nsp31512A1512XGCATAG130.055556
ORF1ab/nsp31512A1512XGCaTAa130.055556
ORF1ab/nsp31512A1512GgCAgGG130.055556
ORF1ab/nsp31512A1512GgCAgGC130.055556
ORF1ab/nsp31512A1512GgCagGa130.055556
ORF1ab/nsp31512A1512AgcAgcC130.055556
ORF1ab/nsp31512A1512AgcAgcG130.055556
ORF1ab/nsp31512A1512AgcAgcT130.055556
ORF1ab/nsp31512A1512SGcATcC130.055556
ORF1ab/nsp31512A1512SGcATcG130.055556
ORF1ab/nsp31512A1512XGCaTGa130.055556
ORF1ab/nsp31512A1512PGcaCca33All0.000001
ORF1ab/nsp31512A1512XGCaTGa13All0
ORF1ab/nsp31512A1512XGCaTAa13All0
ORF1ab/nsp31512A1512XGCATAG13All0
ORF1ab/nsp31512A1512AgcAgcT33AY.1000.000138
ORF1ab/nsp31512A1512GgCagGa33AY.4.50.000322
ORF1ab/nsp31512A1512SGcaTca33AY.440.000018
ORF1ab/nsp31512A1512EgCagAa33AY.80.001818
ORF1ab/nsp31512A1512AgcAgcG23AY.9.20.000073
ORF1ab/nsp31512A1512AgcAgcT13AY.9.20.000037
ORF1ab/nsp31512A1512delGCA---33B.1.1.2180.023077
ORF1ab/nsp31512A1512AgcAgcG33B.1.1.3060.001315
ORF1ab/nsp31512A1512VgCagTa33B.1.1.70.000003
ORF1ab/nsp31512A1512delGCA---33B.1.1770.00004
ORF1ab/nsp31512A1512delGCA---33B.1.4110.011111
ORF1ab/nsp31512A1512AgcAgcG33B.1.4500.034091
ORF1ab/nsp31512A1512LGCaTTa220.111111
ORF1ab/nsp31512A1512EgCAgAG120.055556
ORF1ab/nsp31512A1512EgCagAa120.055556
ORF1ab/nsp31512A1512VgCAgTT120.055556
ORF1ab/nsp31512A1512VgCagTa120.055556
ORF1ab/nsp31512A1512LGCaTTa22All0
ORF1ab/nsp31512A1512IGCaATa22All0
ORF1ab/nsp31512A1512MGCAATG22All0
ORF1ab/nsp31512A1512AgcAgcG22AY.200.000078
ORF1ab/nsp31512A1512del1gcAgc-22AY.250.000012
ORF1ab/nsp31512A1512AgcAgcT12AY.30.00001
ORF1ab/nsp31512A1512AgcAgcG12AY.30.00001
ORF1ab/nsp31512A1512AgcAgcT12AY.390.000025
ORF1ab/nsp31512A1512AgcAgcG12AY.390.000025
ORF1ab/nsp31512A1512delGCA---22AY.40.000003
ORF1ab/nsp31512A1512delGCA---22AY.420.00008
ORF1ab/nsp31512A1512SGcaTca22AY.420.00008
ORF1ab/nsp31512A1512delGCA---22AY.430.000009
ORF1ab/nsp31512A1512RGCaAGa12AY.440.000006
ORF1ab/nsp31512A1512RGCAAGG12AY.440.000006
ORF1ab/nsp31512A1512SGcaTca22AY.700.000417
ORF1ab/nsp31512A1512GgCagGa22AY.80.001212
ORF1ab/nsp31512A1512GgCagGa12B.10.000009
ORF1ab/nsp31512A1512del1GCA-TC12B.10.000009
ORF1ab/nsp31512A1512GgCAgGC12B.10.000009
ORF1ab/nsp31512A1512del1gcAgc-12B.10.000009
ORF1ab/nsp31512A1512SGcaTca22B.1.10.000036
ORF1ab/nsp31512A1512TGcaAca22B.1.1.70.000002
ORF1ab/nsp31512A1512GgCagGa22B.1.1770.000026
ORF1ab/nsp31512A1512AgcAgcG22B.1.1770.000026
ORF1ab/nsp31512A1512delGCA---22B.1.177.620.002384
ORF1ab/nsp31512A1512AgcAgcG22B.1.2400.000431
ORF1ab/nsp31512A1512AgcAgcT22B.1.36.380.003284
ORF1ab/nsp31512A1512SGcaTca22B.1.5950.000522
ORF1ab/nsp31512A1512AgcAgcG22B.1.617.20.000008
ORF1ab/nsp31512A1512GgCagGa22B.1.617.20.000008
ORF1ab/nsp31512A1512AgcAgcG22B.1.90.012346
ORF1ab/nsp31512A1512SGcaTca22P.10.000032
ORF1ab/nsp31512A1512GgCagGa22P.1.10.000635
ORF1ab/nsp31512A1512AgcAgcG22R.10.00018
ORF1ab/nsp31512A1512WGCATGG110.055556
ORF1ab/nsp31512A1512CGCATGC110.055556
ORF1ab/nsp31512A1512DgCAgAC110.055556
ORF1ab/nsp31512A1512YGCATAC110.055556
ORF1ab/nsp31512A1512VgCagTa11A.2.40.003367
ORF1ab/nsp31512A1512PGcaCca11A.2.40.003367
ORF1ab/nsp31512A1512QGCaCAa11A.2.40.003367
ORF1ab/nsp31512A1512EgCagAa11A.2.40.003367
ORF1ab/nsp31512A1512AgcAgcC11A.23.10.000704
ORF1ab/nsp31512A1512delGCA---11AD.20.000219
ORF1ab/nsp31512A1512DgCAgAC11All0
ORF1ab/nsp31512A1512KGCaAAa11All0
ORF1ab/nsp31512A1512WGCATGG11All0
ORF1ab/nsp31512A1512CGCATGC11All0
ORF1ab/nsp31512A1512QGCaCAa11All0
ORF1ab/nsp31512A1512YGCATAC11All0
ORF1ab/nsp31512A1512del1gcAgc-11AU.10.001266
ORF1ab/nsp31512A1512delGCA---11AY.1010.00049
ORF1ab/nsp31512A1512SGcaTca11AY.1020.000027
ORF1ab/nsp31512A1512GgCagGa11AY.1200.000037
ORF1ab/nsp31512A1512EgCagAa11AY.1200.000037
ORF1ab/nsp31512A1512delGCA---11AY.1200.000037
ORF1ab/nsp31512A1512TGcaAca11AY.130.000161
ORF1ab/nsp31512A1512EgCagAa11AY.170.008197
ORF1ab/nsp31512A1512SGcaTca11AY.200.000039
ORF1ab/nsp31512A1512delGCA---11AY.250.000006
ORF1ab/nsp31512A1512VgCagTa11AY.250.000006
ORF1ab/nsp31512A1512AgcAgcT11AY.260.000028
ORF1ab/nsp31512A1512SGcaTca11AY.30.00001
ORF1ab/nsp31512A1512del1Gca-ca11AY.30.00001
ORF1ab/nsp31512A1512EgCagAa11AY.300.000396
ORF1ab/nsp31512A1512SGcaTca11AY.300.000396
ORF1ab/nsp31512A1512AgcAgcG11AY.330.000067
ORF1ab/nsp31512A1512delGCA---11AY.360.000148
ORF1ab/nsp31512A1512SGcaTca11AY.390.000025
ORF1ab/nsp31512A1512del1gcAgc-11AY.390.000025
ORF1ab/nsp31512A1512VgCagTa11AY.40.000002
ORF1ab/nsp31512A1512TGcaAca11AY.40.000002
ORF1ab/nsp31512A1512PGcaCca11AY.40.000002
ORF1ab/nsp31512A1512delGCA---11AY.4.30.000842
ORF1ab/nsp31512A1512delGCA---11AY.4.50.000107
ORF1ab/nsp31512A1512VgCagTa11AY.420.00004
ORF1ab/nsp31512A1512del1gcAgc-11AY.420.00004
ORF1ab/nsp31512A1512TGcaAca11AY.430.000004
ORF1ab/nsp31512A1512AgcAgcG11AY.430.000004
ORF1ab/nsp31512A1512RGCaAGa11AY.430.000004
ORF1ab/nsp31512A1512SGcaTca11AY.430.000004
ORF1ab/nsp31512A1512del1gcAgc-11AY.430.000004
ORF1ab/nsp31512A1512IGCaATa11AY.440.000006
ORF1ab/nsp31512A1512MGCAATG11AY.440.000006
ORF1ab/nsp31512A1512VgCagTa11AY.440.000006
ORF1ab/nsp31512A1512AgcAgcG11AY.450.000122
ORF1ab/nsp31512A1512AgcAgcC11AY.460.000104
ORF1ab/nsp31512A1512SGcaTca11AY.46.60.000072
ORF1ab/nsp31512A1512SGcaTca11AY.50.000021
ORF1ab/nsp31512A1512delGCA---11AY.50.000021
ORF1ab/nsp31512A1512AgcAgcG11AY.60.000041
ORF1ab/nsp31512A1512delGCA---11AY.660.00107
ORF1ab/nsp31512A1512SGcaTca11AY.680.000274
ORF1ab/nsp31512A1512AgcAgcG11AY.690.000187
ORF1ab/nsp31512A1512del1gcAgc-11AY.750.000056
ORF1ab/nsp31512A1512delGCA---11AY.760.004831
ORF1ab/nsp31512A1512RGCaAGa11AY.840.000437
ORF1ab/nsp31512A1512TGcaAca11AY.90.000068
ORF1ab/nsp31512A1512SGcaTca11AY.90.000068
ORF1ab/nsp31512A1512GgCagGa11AY.90.000068
ORF1ab/nsp31512A1512SGcaTca11AY.9.10.000084
ORF1ab/nsp31512A1512MGCAATG11AY.9.20.000037
ORF1ab/nsp31512A1512AgcAgcG11AY.930.000273
ORF1ab/nsp31512A1512SGcaTca11AY.980.000079
ORF1ab/nsp31512A1512delGCA---11AY.990.001049
ORF1ab/nsp31512A1512TGcaAca11B.10.000009
ORF1ab/nsp31512A1512KGCaAAa11B.1.10.000018
ORF1ab/nsp31512A1512IGCaATa11B.1.10.000018
ORF1ab/nsp31512A1512VgCagTa11B.1.10.000018
ORF1ab/nsp31512A1512AgcAgcC11B.1.10.000018
ORF1ab/nsp31512A1512AgcAgcG11B.1.1.10.000327
ORF1ab/nsp31512A1512TGcaAca11B.1.1.100.001115
ORF1ab/nsp31512A1512AgcAgcT11B.1.1.2160.00089
ORF1ab/nsp31512A1512VgCagTa11B.1.1.2220.000204
ORF1ab/nsp31512A1512VgCagTa11B.1.1.2340.012048
ORF1ab/nsp31512A1512SGcaTca11B.1.1.370.000193
ORF1ab/nsp31512A1512delGCA---11B.1.1.370.000193
ORF1ab/nsp31512A1512TGcaAca11B.1.1.370.000193
ORF1ab/nsp31512A1512SGcaTca11B.1.1.390.00051
ORF1ab/nsp31512A1512delGCA---11B.1.1.460.004367
ORF1ab/nsp31512A1512delGCA---11B.1.1.4640.001473
ORF1ab/nsp31512A1512AgcAgcC11B.1.1.5190.00004
ORF1ab/nsp31512A1512delGCA---11B.1.1.5250.005464
ORF1ab/nsp31512A1512VgCagTa11B.1.1.570.011494
ORF1ab/nsp31512A1512EgCagAa11B.1.1.70.000001
ORF1ab/nsp31512A1512del1gcAgc-11B.1.1.70.000001
ORF1ab/nsp31512A1512EgCagAa11B.1.130.002375
ORF1ab/nsp31512A1512AgcAgcT11B.1.1600.000031
ORF1ab/nsp31512A1512TGcaAca11B.1.1770.000013
ORF1ab/nsp31512A1512SGcaTca11B.1.1770.000013
ORF1ab/nsp31512A1512VgCagTa11B.1.177.120.000152
ORF1ab/nsp31512A1512SGcaTca11B.1.177.50.001242
ORF1ab/nsp31512A1512SGcaTca11B.1.177.60.000977
ORF1ab/nsp31512A1512EgCagAa11B.1.20.000009
ORF1ab/nsp31512A1512SGcaTca11B.1.20.000009
ORF1ab/nsp31512A1512delGCA---11B.1.20.000009
ORF1ab/nsp31512A1512delGCA---11B.1.2100.002132
ORF1ab/nsp31512A1512AgcAgcC11B.1.2100.002132
ORF1ab/nsp31512A1512GgCagGa11B.1.2210.000071
ORF1ab/nsp31512A1512AgcAgcG11B.1.2430.00007
ORF1ab/nsp31512A1512del1gcAgc-11B.1.2430.00007
ORF1ab/nsp31512A1512AgcAgcG11B.1.258.170.000104
ORF1ab/nsp31512A1512SGcaTca11B.1.258.170.000104
ORF1ab/nsp31512A1512SGcaTca11B.1.3510.00003
ORF1ab/nsp31512A1512AgcAgcG11B.1.3510.00003
ORF1ab/nsp31512A1512delGCA---11B.1.3690.000285
ORF1ab/nsp31512A1512AgcAgcG11B.1.4000.000429
ORF1ab/nsp31512A1512delGCA---11B.1.416.10.001563
ORF1ab/nsp31512A1512AgcAgcG11B.1.4270.00005
ORF1ab/nsp31512A1512PGcaCca11B.1.4290.000024
ORF1ab/nsp31512A1512delGCA---11B.1.4530.003236
ORF1ab/nsp31512A1512delGCA---11B.1.5260.000024
ORF1ab/nsp31512A1512AgcAgcG11B.1.5450.014493
ORF1ab/nsp31512A1512VgCagTa11B.1.5600.00463
ORF1ab/nsp31512A1512delGCA---11B.1.5770.000687
ORF1ab/nsp31512A1512AgcAgcG11B.1.5770.000687
ORF1ab/nsp31512A1512SGcaTca11B.1.5800.004065
ORF1ab/nsp31512A1512delGCA---11B.1.617.10.000129
ORF1ab/nsp31512A1512TGcaAca11B.1.617.20.000004
ORF1ab/nsp31512A1512VgCagTa11B.1.617.20.000004
ORF1ab/nsp31512A1512GgCagGa11B.1.619.10.000641
ORF1ab/nsp31512A1512delGCA---11B.1.6210.000089
ORF1ab/nsp31512A1512AgcAgcC11B.1.6210.000089
ORF1ab/nsp31512A1512del1Gca-ca11B.1.6210.000089
ORF1ab/nsp31512A1512TGcaAca11B.1.6210.000089
ORF1ab/nsp31512A1512AgcAgcG11B.1.6280.000352
ORF1ab/nsp31512A1512VgCagTa11B.1.6370.000073
ORF1ab/nsp31512A1512VgCAgTT11C.350.000774
ORF1ab/nsp31512A1512SGcaTca11C.360.000911
ORF1ab/nsp31512A1512SGcaTca11C.36.30.000567
ORF1ab/nsp31512A1512SGcaTca11P.1.10.000318
ORF1ab/nsp31512A1512AgcAgcT11P.1.140.000048
ORF1ab/nsp31512A1512delGCA---11P.1.150.000232
ORF1ab/nsp31512A1512AgcAgcG11P.60.003145