CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1511

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31511L1511LL2329LsynttGttA188718450.9777427250-7252
ORF1ab/nsp31511L1511LL2329LsynTtgCtg1887420.02225767250-7252
ORF1ab/nsp31511L1511VL2329VnonsynTtgGtg111611150.9991047250-7252
ORF1ab/nsp31511L1511VL2329VnonsynTtGGtA111610.0008960577250-7252
ORF1ab/nsp31511L1511FL2329FnonsynttGttT104910370.9885617250-7252
ORF1ab/nsp31511L1511FL2329FnonsynttGttC1049120.01143957250-7252
ORF1ab/nsp31511L1511delL2329deldelTTG---747417250-7252
ORF1ab/nsp31511L1511SL2329SnonsyntTgtCg242417250-7252
ORF1ab/nsp31511L1511XL2329XnonsyntTgtAg1190.8181827250-7252
ORF1ab/nsp31511L1511XL2329XnonsyntTGtAA1110.09090917250-7252
ORF1ab/nsp31511L1511XL2329XnonsyntTGtGA1110.09090917250-7252
ORF1ab/nsp31511L1511WL2329WnonsyntTgtGg8817250-7252
ORF1ab/nsp31511L1511del1L2329del1delttGtt-540.87250-7252
ORF1ab/nsp31511L1511del1L2329del1delTtG-tN510.27250-7252
ORF1ab/nsp31511L1511QL2329QnonsynTTgCAg4417250-7252
ORF1ab/nsp31511L1511ML2329MnonsynTtgAtg3317250-7252
ORF1ab/nsp31511L1511IL2329InonsynTtGAtA2217250-7252
ORF1ab/nsp31511L1511RL2329RnonsynTTgCGg2217250-7252
ORF1ab/nsp31511L1511GL2329GnonsynTTgGGg210.57250-7252
ORF1ab/nsp31511L1511GL2329GnonsynTTGGGA210.57250-7252
ORF1ab/nsp31511L1511del2L2329del2delTTG--N210.57250-7252
ORF1ab/nsp31511L1511del2L2329del2deltTGt--210.57250-7252

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31511L1511LttGttA18451887All0.000353
ORF1ab/nsp31511L1511LTtgCtg421887All0.000008
ORF1ab/nsp31511L1511LttGttA15061516B.1.1.70.001348
ORF1ab/nsp31511L1511LTtgCtg101516B.1.1.70.000009
ORF1ab/nsp31511L1511VTtgGtg11151116All0.000213
ORF1ab/nsp31511L1511VTtGGtA11116All0
ORF1ab/nsp31511L1511FttGttT10371049All0.000198
ORF1ab/nsp31511L1511FttGttC121049All0.000002
ORF1ab/nsp31511L1511VTtgGtg884884AY.4.30.744108
ORF1ab/nsp31511L1511FttGttT673676AY.40.001047
ORF1ab/nsp31511L1511FttGttC3676AY.40.000005
ORF1ab/nsp31511L1511VTtgGtg172172AY.40.000268
ORF1ab/nsp31511L1511delTTG---7474All0.000014
ORF1ab/nsp31511L1511LttGttA6264AY.40.000096
ORF1ab/nsp31511L1511LTtgCtg264AY.40.000003
ORF1ab/nsp31511L1511LttGttA5354AY.440.000323
ORF1ab/nsp31511L1511LTtgCtg154AY.440.000006
ORF1ab/nsp31511L1511LttGttA4141B.1.2210.002912
ORF1ab/nsp31511L1511FttGttT3839AY.430.000168
ORF1ab/nsp31511L1511FttGttC139AY.430.000004
ORF1ab/nsp31511L1511FttGttT3333AY.1030.000205
ORF1ab/nsp31511L1511FttGttT3131B.1.617.20.000117
ORF1ab/nsp31511L1511VTtgGtg2626B.1.1.70.000023
ORF1ab/nsp31511L1511StTgtCg2424All0.000005
ORF1ab/nsp31511L1511FttGttT2323AY.250.000138
ORF1ab/nsp31511L1511FttGttT2022AY.1020.00053
ORF1ab/nsp31511L1511FttGttC222AY.1020.000053
ORF1ab/nsp31511L1511LTtgCtg1622P.10.000252
ORF1ab/nsp31511L1511LttGttA622P.10.000095
ORF1ab/nsp31511L1511LttGttA2121B.1.6370.001535
ORF1ab/nsp31511L1511FttGttT1919AY.60.000781
ORF1ab/nsp31511L1511FttGttT1719B.1.1.70.000015
ORF1ab/nsp31511L1511FttGttC219B.1.1.70.000002
ORF1ab/nsp31511L1511FttGttT1818AY.750.001008
ORF1ab/nsp31511L1511FttGttT1616AY.440.000097
ORF1ab/nsp31511L1511FttGttT1616B.1.2430.001113
ORF1ab/nsp31511L1511FttGttT1515AY.390.000371
ORF1ab/nsp31511L1511delTTG---1515B.1.1.70.000013
ORF1ab/nsp31511L1511FttGttT1414AY.30.000139
ORF1ab/nsp31511L1511LttGttA1313AY.260.000368
ORF1ab/nsp31511L1511LttGttA1313AY.4.20.000282
ORF1ab/nsp31511L1511LttGttA1212AY.740.001388
ORF1ab/nsp31511L1511LttGttA1012B.10.000092
ORF1ab/nsp31511L1511LTtgCtg212B.10.000018
ORF1ab/nsp31511L1511LttGttA1212B.1.1770.000158
ORF1ab/nsp31511L1511LttGttA1212B.1.2580.000799
ORF1ab/nsp31511L1511XtTgtAg911All0.000002
ORF1ab/nsp31511L1511XtTGtAA111All0
ORF1ab/nsp31511L1511XtTGtGA111All0
ORF1ab/nsp31511L1511LttGttA1011AY.1030.000062
ORF1ab/nsp31511L1511LTtgCtg111AY.1030.000006
ORF1ab/nsp31511L1511FttGttT1111AY.4.20.000239
ORF1ab/nsp31511L1511LttGttA1010B.1.1.10.003267
ORF1ab/nsp31511L1511FttGttT1010B.1.20.000088
ORF1ab/nsp31511L1511WtTgtGg88All0.000002
ORF1ab/nsp31511L1511FttGttT77B.10.000064
ORF1ab/nsp31511L1511LttGttA67B.1.617.20.000023
ORF1ab/nsp31511L1511LTtgCtg17B.1.617.20.000004
ORF1ab/nsp31511L1511FttGttT56AY.50.000103
ORF1ab/nsp31511L1511FttGttC16AY.50.000021
ORF1ab/nsp31511L1511LttGttA56B.1.5960.000436
ORF1ab/nsp31511L1511LTtgCtg16B.1.5960.000087
ORF1ab/nsp31511L1511VTtgGtg66B.1.617.20.000023
ORF1ab/nsp31511L1511del1ttGtt-45All0.000001
ORF1ab/nsp31511L1511del1TtG-tN15All0
ORF1ab/nsp31511L1511FttGttT55AY.1210.000677
ORF1ab/nsp31511L1511VTtgGtg55AY.430.000022
ORF1ab/nsp31511L1511delTTG---55B.10.000046
ORF1ab/nsp31511L1511LttGttA45B.1.10.000073
ORF1ab/nsp31511L1511LTtgCtg15B.1.10.000018
ORF1ab/nsp31511L1511LttGttA55B.1.5230.012255
ORF1ab/nsp31511L1511delTTG---55B.1.617.20.000019
ORF1ab/nsp31511L1511LttGttA55D.20.000375
ORF1ab/nsp31511L1511delTTG---440.222222
ORF1ab/nsp31511L1511QTTgCAg44All0.000001
ORF1ab/nsp31511L1511StTgtCg44AY.40.000006
ORF1ab/nsp31511L1511StTgtCg44AY.430.000018
ORF1ab/nsp31511L1511FttGttT44AY.99.20.000369
ORF1ab/nsp31511L1511delTTG---44B.1.10.000073
ORF1ab/nsp31511L1511VTtgGtg44B.1.177.330.006579
ORF1ab/nsp31511L1511LttGttA34B.1.20.000026
ORF1ab/nsp31511L1511LTtgCtg14B.1.20.000009
ORF1ab/nsp31511L1511FttGttT34B.1.4290.000071
ORF1ab/nsp31511L1511FttGttC14B.1.4290.000024
ORF1ab/nsp31511L1511MTtgAtg33All0.000001
ORF1ab/nsp31511L1511LttGttA33AY.30.00003
ORF1ab/nsp31511L1511VTtgGtg33AY.390.000074
ORF1ab/nsp31511L1511delTTG---33B.1.1.2180.023077
ORF1ab/nsp31511L1511XtTgtAg23B.1.1.70.000002
ORF1ab/nsp31511L1511XtTGtAA13B.1.1.70.000001
ORF1ab/nsp31511L1511LttGttA33B.1.1600.000094
ORF1ab/nsp31511L1511delTTG---33B.1.1770.00004
ORF1ab/nsp31511L1511delTTG---33B.1.4110.011111
ORF1ab/nsp31511L1511FttGttT33B.1.5250.000339
ORF1ab/nsp31511L1511LttGttA220.111111
ORF1ab/nsp31511L1511QTTgCAg220.111111
ORF1ab/nsp31511L1511FttGttT220.111111
ORF1ab/nsp31511L1511ITtGAtA22All0
ORF1ab/nsp31511L1511RTTgCGg22All0
ORF1ab/nsp31511L1511del2TTG--N12All0
ORF1ab/nsp31511L1511GTTgGGg12All0
ORF1ab/nsp31511L1511GTTGGGA12All0
ORF1ab/nsp31511L1511del2tTGt--12All0
ORF1ab/nsp31511L1511MTtgAtg22AY.1000.000092
ORF1ab/nsp31511L1511FttGttT22AY.1170.000169
ORF1ab/nsp31511L1511StTgtCg22AY.290.000032
ORF1ab/nsp31511L1511FttGttT22AY.3.10.000171
ORF1ab/nsp31511L1511FttGttT22AY.330.000134
ORF1ab/nsp31511L1511FttGttT22AY.39.10.000079
ORF1ab/nsp31511L1511delTTG---22AY.40.000003
ORF1ab/nsp31511L1511delTTG---22AY.420.00008
ORF1ab/nsp31511L1511LTtgCtg22AY.420.00008
ORF1ab/nsp31511L1511FttGttT22AY.420.00008
ORF1ab/nsp31511L1511delTTG---22AY.430.000009
ORF1ab/nsp31511L1511LTtgCtg12AY.430.000004
ORF1ab/nsp31511L1511LttGttA12AY.430.000004
ORF1ab/nsp31511L1511VTtgGtg22AY.440.000012
ORF1ab/nsp31511L1511FttGttT22AY.460.000208
ORF1ab/nsp31511L1511FttGttT22AY.7.20.001119
ORF1ab/nsp31511L1511del1ttGtt-22B.10.000018
ORF1ab/nsp31511L1511VTtgGtg22B.1.1260.002551
ORF1ab/nsp31511L1511FttGttT22B.1.1770.000026
ORF1ab/nsp31511L1511delTTG---22B.1.177.620.002384
ORF1ab/nsp31511L1511StTgtCg22B.1.20.000018
ORF1ab/nsp31511L1511LttGttA22B.1.3510.000059
ORF1ab/nsp31511L1511FttGttT22B.1.5090.001732
ORF1ab/nsp31511L1511FttGttT22B.1.5960.000174
ORF1ab/nsp31511L1511StTgtCg22B.1.617.20.000008
ORF1ab/nsp31511L1511delTTG---22B.1.6210.000177
ORF1ab/nsp31511L1511StTgtCg22C.36.30.001134
ORF1ab/nsp31511L1511GTTGGGA12P.10.000016
ORF1ab/nsp31511L1511VTtgGtg12P.10.000016
ORF1ab/nsp31511L1511GTTgGGg12P.10.000016
ORF1ab/nsp31511L1511VTtGGtA12P.10.000016
ORF1ab/nsp31511L1511LttGttA22Q.10.000253
ORF1ab/nsp31511L1511LttGttA22Q.80.00033
ORF1ab/nsp31511L1511XtTgtAg11A.20.000662
ORF1ab/nsp31511L1511WtTgtGg11A.2.40.003367
ORF1ab/nsp31511L1511delTTG---11AD.20.000219
ORF1ab/nsp31511L1511XtTgtAg11AY.1000.000046
ORF1ab/nsp31511L1511LttGttA11AY.1000.000046
ORF1ab/nsp31511L1511delTTG---11AY.1010.00049
ORF1ab/nsp31511L1511VTtgGtg11AY.1020.000027
ORF1ab/nsp31511L1511LttGttA11AY.1040.001984
ORF1ab/nsp31511L1511FttGttT11AY.1060.000335
ORF1ab/nsp31511L1511FttGttT11AY.1070.000466
ORF1ab/nsp31511L1511FttGttT11AY.1100.000113
ORF1ab/nsp31511L1511FttGttT11AY.1110.000183
ORF1ab/nsp31511L1511LttGttA11AY.1130.000142
ORF1ab/nsp31511L1511FttGttT11AY.1190.000035
ORF1ab/nsp31511L1511StTgtCg11AY.1200.000037
ORF1ab/nsp31511L1511VTtgGtg11AY.1200.000037
ORF1ab/nsp31511L1511delTTG---11AY.1200.000037
ORF1ab/nsp31511L1511LttGttA11AY.140.000088
ORF1ab/nsp31511L1511FttGttT11AY.190.00114
ORF1ab/nsp31511L1511LttGttA11AY.200.000039
ORF1ab/nsp31511L1511FttGttT11AY.200.000039
ORF1ab/nsp31511L1511FttGttT11AY.230.00007
ORF1ab/nsp31511L1511LTtgCtg11AY.250.000006
ORF1ab/nsp31511L1511delTTG---11AY.250.000006
ORF1ab/nsp31511L1511FttGttT11AY.260.000028
ORF1ab/nsp31511L1511FttGttT11AY.290.000016
ORF1ab/nsp31511L1511del1ttGtt-11AY.30.00001
ORF1ab/nsp31511L1511LttGttA11AY.3.10.000085
ORF1ab/nsp31511L1511VTtgGtg11AY.300.000396
ORF1ab/nsp31511L1511delTTG---11AY.360.000148
ORF1ab/nsp31511L1511delTTG---11AY.4.30.000842
ORF1ab/nsp31511L1511LttGttA11AY.4.50.000107
ORF1ab/nsp31511L1511delTTG---11AY.4.50.000107
ORF1ab/nsp31511L1511RTTgCGg11AY.430.000004
ORF1ab/nsp31511L1511RTTgCGg11AY.440.000006
ORF1ab/nsp31511L1511QTTgCAg11AY.440.000006
ORF1ab/nsp31511L1511WtTgtGg11AY.460.000104
ORF1ab/nsp31511L1511VTtgGtg11AY.46.20.000635
ORF1ab/nsp31511L1511FttGttT11AY.46.20.000635
ORF1ab/nsp31511L1511FttGttT11AY.46.60.000072
ORF1ab/nsp31511L1511StTgtCg11AY.46.60.000072
ORF1ab/nsp31511L1511LttGttA11AY.470.000031
ORF1ab/nsp31511L1511delTTG---11AY.50.000021
ORF1ab/nsp31511L1511FttGttT11AY.5.30.000337
ORF1ab/nsp31511L1511FttGttT11AY.530.000288
ORF1ab/nsp31511L1511FttGttT11AY.550.000917
ORF1ab/nsp31511L1511LttGttA11AY.60.000041
ORF1ab/nsp31511L1511LttGttA11AY.610.000105
ORF1ab/nsp31511L1511FttGttT11AY.630.000387
ORF1ab/nsp31511L1511delTTG---11AY.660.00107
ORF1ab/nsp31511L1511LttGttA11AY.690.000187
ORF1ab/nsp31511L1511FttGttC11AY.70.000196
ORF1ab/nsp31511L1511XtTgtAg11AY.700.000209
ORF1ab/nsp31511L1511delTTG---11AY.760.004831
ORF1ab/nsp31511L1511ITtGAtA11AY.840.000437
ORF1ab/nsp31511L1511FttGttT11AY.9.20.000037
ORF1ab/nsp31511L1511QTTgCAg11AY.9.20.000037
ORF1ab/nsp31511L1511LttGttA11AY.940.000443
ORF1ab/nsp31511L1511delTTG---11AY.990.001049
ORF1ab/nsp31511L1511del2tTGt--11B.10.000009
ORF1ab/nsp31511L1511WtTgtGg11B.10.000009
ORF1ab/nsp31511L1511FttGttT11B.1.10.000018
ORF1ab/nsp31511L1511VTtgGtg11B.1.10.000018
ORF1ab/nsp31511L1511LttGttA11B.1.1.250.000569
ORF1ab/nsp31511L1511WtTgtGg11B.1.1.330.000421
ORF1ab/nsp31511L1511delTTG---11B.1.1.370.000193
ORF1ab/nsp31511L1511LttGttA11B.1.1.4340.000349
ORF1ab/nsp31511L1511delTTG---11B.1.1.460.004367
ORF1ab/nsp31511L1511delTTG---11B.1.1.4640.001473
ORF1ab/nsp31511L1511LTtgCtg11B.1.1.500.000679
ORF1ab/nsp31511L1511XtTgtAg11B.1.1.5190.00004
ORF1ab/nsp31511L1511delTTG---11B.1.1.5250.005464
ORF1ab/nsp31511L1511FttGttT11B.1.1.610.008772
ORF1ab/nsp31511L1511StTgtCg11B.1.1.70.000001
ORF1ab/nsp31511L1511del1TtG-tN11B.1.1.70.000001
ORF1ab/nsp31511L1511WtTgtGg11B.1.1.70.000001
ORF1ab/nsp31511L1511FttGttT11B.1.110.30.000718
ORF1ab/nsp31511L1511LttGttA11B.1.1490.003425
ORF1ab/nsp31511L1511FttGttT11B.1.1600.000031
ORF1ab/nsp31511L1511FttGttT11B.1.160.160.000929
ORF1ab/nsp31511L1511StTgtCg11B.1.1770.000013
ORF1ab/nsp31511L1511VTtgGtg11B.1.1770.000013
ORF1ab/nsp31511L1511FttGttT11B.1.177.210.000076
ORF1ab/nsp31511L1511FttGttT11B.1.177.560.000668
ORF1ab/nsp31511L1511FttGttC11B.1.177.650.000665
ORF1ab/nsp31511L1511WtTgtGg11B.1.20.000009
ORF1ab/nsp31511L1511VTtgGtg11B.1.20.000009
ORF1ab/nsp31511L1511delTTG---11B.1.2100.002132
ORF1ab/nsp31511L1511FttGttT11B.1.2210.000071
ORF1ab/nsp31511L1511FttGttT11B.1.2400.000216
ORF1ab/nsp31511L1511LttGttA11B.1.2430.00007
ORF1ab/nsp31511L1511FttGttT11B.1.2580.000067
ORF1ab/nsp31511L1511del2TTG--N11B.1.2650.001271
ORF1ab/nsp31511L1511del1ttGtt-11B.1.360.000146
ORF1ab/nsp31511L1511LttGttA11B.1.36.190.009259
ORF1ab/nsp31511L1511StTgtCg11B.1.36.290.000517
ORF1ab/nsp31511L1511FttGttT11B.1.3690.000285
ORF1ab/nsp31511L1511delTTG---11B.1.416.10.001563
ORF1ab/nsp31511L1511MTtgAtg11B.1.4270.00005
ORF1ab/nsp31511L1511VTtgGtg11B.1.4270.00005
ORF1ab/nsp31511L1511WtTgtGg11B.1.4270.00005
ORF1ab/nsp31511L1511LTtgCtg11B.1.4290.000024
ORF1ab/nsp31511L1511VTtgGtg11B.1.4290.000024
ORF1ab/nsp31511L1511VTtgGtg11B.1.4450.011765
ORF1ab/nsp31511L1511delTTG---11B.1.4530.003236
ORF1ab/nsp31511L1511delTTG---11B.1.5260.000024
ORF1ab/nsp31511L1511FttGttT11B.1.5260.000024
ORF1ab/nsp31511L1511XtTgtAg11B.1.5260.000024
ORF1ab/nsp31511L1511delTTG---11B.1.5770.000687
ORF1ab/nsp31511L1511FttGttT11B.1.5880.00091
ORF1ab/nsp31511L1511LttGttA11B.1.5950.000261
ORF1ab/nsp31511L1511LttGttA11B.1.617.10.000129
ORF1ab/nsp31511L1511delTTG---11B.1.617.10.000129
ORF1ab/nsp31511L1511XtTgtAg11B.1.617.20.000004
ORF1ab/nsp31511L1511FttGttT11B.1.6210.000089
ORF1ab/nsp31511L1511XtTgtAg11B.1.6370.000073
ORF1ab/nsp31511L1511FttGttT11B.6.60.000889
ORF1ab/nsp31511L1511ITtGAtA11C.350.000774
ORF1ab/nsp31511L1511StTgtCg11D.20.000075
ORF1ab/nsp31511L1511FttGttT11D.20.000075
ORF1ab/nsp31511L1511XtTGtGA11P.10.000016
ORF1ab/nsp31511L1511WtTgtGg11P.10.000016
ORF1ab/nsp31511L1511StTgtCg11P.10.000016
ORF1ab/nsp31511L1511delTTG---11P.1.150.000232
ORF1ab/nsp31511L1511StTgtCg11P.1.150.000232
ORF1ab/nsp31511L1511LttGttA11Q.20.000613
ORF1ab/nsp31511L1511LttGttA11R.10.00009
ORF1ab/nsp31511L1511FttGttT11R.20.014493