CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1511

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31511L1511LL2329LsynttGttA188718450.9777427250-7252
ORF1ab/nsp31511L1511LL2329LsynTtgCtg1887420.02225767250-7252
ORF1ab/nsp31511L1511VL2329VnonsynTtgGtg111611150.9991047250-7252
ORF1ab/nsp31511L1511VL2329VnonsynTtGGtA111610.0008960577250-7252
ORF1ab/nsp31511L1511FL2329FnonsynttGttT104910370.9885617250-7252
ORF1ab/nsp31511L1511FL2329FnonsynttGttC1049120.01143957250-7252
ORF1ab/nsp31511L1511delL2329deldelTTG---747417250-7252
ORF1ab/nsp31511L1511SL2329SnonsyntTgtCg242417250-7252
ORF1ab/nsp31511L1511XL2329XnonsyntTgtAg1190.8181827250-7252
ORF1ab/nsp31511L1511XL2329XnonsyntTGtAA1110.09090917250-7252
ORF1ab/nsp31511L1511XL2329XnonsyntTGtGA1110.09090917250-7252
ORF1ab/nsp31511L1511WL2329WnonsyntTgtGg8817250-7252
ORF1ab/nsp31511L1511del1L2329del1delttGtt-540.87250-7252
ORF1ab/nsp31511L1511del1L2329del1delTtG-tN510.27250-7252
ORF1ab/nsp31511L1511QL2329QnonsynTTgCAg4417250-7252
ORF1ab/nsp31511L1511ML2329MnonsynTtgAtg3317250-7252
ORF1ab/nsp31511L1511IL2329InonsynTtGAtA2217250-7252
ORF1ab/nsp31511L1511RL2329RnonsynTTgCGg2217250-7252
ORF1ab/nsp31511L1511GL2329GnonsynTTgGGg210.57250-7252
ORF1ab/nsp31511L1511GL2329GnonsynTTGGGA210.57250-7252
ORF1ab/nsp31511L1511del2L2329del2delTTG--N210.57250-7252
ORF1ab/nsp31511L1511del2L2329del2deltTGt--210.57250-7252

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31511L1511LttGttA18451887All0.000353
ORF1ab/nsp31511L1511LTtgCtg421887All0.000008
ORF1ab/nsp31511L1511LttGttA15061516B.1.1.70.001348
ORF1ab/nsp31511L1511LTtgCtg101516B.1.1.70.000009
ORF1ab/nsp31511L1511VTtgGtg11151116All0.000213
ORF1ab/nsp31511L1511VTtGGtA11116All0
ORF1ab/nsp31511L1511FttGttT10371049All0.000198
ORF1ab/nsp31511L1511FttGttC121049All0.000002
ORF1ab/nsp31511L1511VTtgGtg884884AY.4.30.744108
ORF1ab/nsp31511L1511FttGttT673676AY.40.001047
ORF1ab/nsp31511L1511FttGttC3676AY.40.000005
ORF1ab/nsp31511L1511VTtgGtg172172AY.40.000268
ORF1ab/nsp31511L1511delTTG---7474All0.000014
ORF1ab/nsp31511L1511LttGttA6264AY.40.000096
ORF1ab/nsp31511L1511LTtgCtg264AY.40.000003
ORF1ab/nsp31511L1511LttGttA5354AY.440.000323
ORF1ab/nsp31511L1511LTtgCtg154AY.440.000006
ORF1ab/nsp31511L1511LttGttA4141B.1.2210.002912
ORF1ab/nsp31511L1511FttGttT3839AY.430.000168
ORF1ab/nsp31511L1511FttGttC139AY.430.000004
ORF1ab/nsp31511L1511FttGttT3333AY.1030.000205
ORF1ab/nsp31511L1511FttGttT3131B.1.617.20.000117
ORF1ab/nsp31511L1511VTtgGtg2626B.1.1.70.000023
ORF1ab/nsp31511L1511StTgtCg2424All0.000005
ORF1ab/nsp31511L1511FttGttT2323AY.250.000138
ORF1ab/nsp31511L1511FttGttT2022AY.1020.00053
ORF1ab/nsp31511L1511FttGttC222AY.1020.000053
ORF1ab/nsp31511L1511LTtgCtg1622P.10.000252
ORF1ab/nsp31511L1511LttGttA622P.10.000095
ORF1ab/nsp31511L1511LttGttA2121B.1.6370.001535
ORF1ab/nsp31511L1511FttGttT1919AY.60.000781
ORF1ab/nsp31511L1511FttGttT1719B.1.1.70.000015
ORF1ab/nsp31511L1511FttGttC219B.1.1.70.000002
ORF1ab/nsp31511L1511FttGttT1818AY.750.001008
ORF1ab/nsp31511L1511FttGttT1616AY.440.000097
ORF1ab/nsp31511L1511FttGttT1616B.1.2430.001113
ORF1ab/nsp31511L1511FttGttT1515AY.390.000371
ORF1ab/nsp31511L1511delTTG---1515B.1.1.70.000013
ORF1ab/nsp31511L1511FttGttT1414AY.30.000139
ORF1ab/nsp31511L1511LttGttA1313AY.260.000368
ORF1ab/nsp31511L1511LttGttA1313AY.4.20.000282
ORF1ab/nsp31511L1511LttGttA1212AY.740.001388
ORF1ab/nsp31511L1511LttGttA1012B.10.000092
ORF1ab/nsp31511L1511LTtgCtg212B.10.000018
ORF1ab/nsp31511L1511LttGttA1212B.1.1770.000158
ORF1ab/nsp31511L1511LttGttA1212B.1.2580.000799
ORF1ab/nsp31511L1511XtTgtAg911All0.000002
ORF1ab/nsp31511L1511XtTGtAA111All0
ORF1ab/nsp31511L1511XtTGtGA111All0
ORF1ab/nsp31511L1511LttGttA1011AY.1030.000062
ORF1ab/nsp31511L1511LTtgCtg111AY.1030.000006
ORF1ab/nsp31511L1511FttGttT1111AY.4.20.000239
ORF1ab/nsp31511L1511LttGttA1010B.1.1.10.003267
ORF1ab/nsp31511L1511FttGttT1010B.1.20.000088
ORF1ab/nsp31511L1511WtTgtGg88All0.000002
ORF1ab/nsp31511L1511FttGttT77B.10.000064
ORF1ab/nsp31511L1511LttGttA67B.1.617.20.000023
ORF1ab/nsp31511L1511LTtgCtg17B.1.617.20.000004
ORF1ab/nsp31511L1511FttGttT56AY.50.000103
ORF1ab/nsp31511L1511FttGttC16AY.50.000021
ORF1ab/nsp31511L1511LttGttA56B.1.5960.000436
ORF1ab/nsp31511L1511LTtgCtg16B.1.5960.000087
ORF1ab/nsp31511L1511VTtgGtg66B.1.617.20.000023
ORF1ab/nsp31511L1511del1ttGtt-45All0.000001
ORF1ab/nsp31511L1511del1TtG-tN15All0
ORF1ab/nsp31511L1511FttGttT55AY.1210.000677
ORF1ab/nsp31511L1511VTtgGtg55AY.430.000022
ORF1ab/nsp31511L1511delTTG---55B.10.000046
ORF1ab/nsp31511L1511LttGttA45B.1.10.000073
ORF1ab/nsp31511L1511LTtgCtg15B.1.10.000018
ORF1ab/nsp31511L1511LttGttA55B.1.5230.012255
ORF1ab/nsp31511L1511delTTG---55B.1.617.20.000019
ORF1ab/nsp31511L1511LttGttA55D.20.000375
ORF1ab/nsp31511L1511delTTG---440.222222
ORF1ab/nsp31511L1511QTTgCAg44All0.000001
ORF1ab/nsp31511L1511StTgtCg44AY.40.000006
ORF1ab/nsp31511L1511StTgtCg44AY.430.000018
ORF1ab/nsp31511L1511FttGttT44AY.99.20.000369
ORF1ab/nsp31511L1511delTTG---44B.1.10.000073
ORF1ab/nsp31511L1511VTtgGtg44B.1.177.330.006579
ORF1ab/nsp31511L1511LttGttA34B.1.20.000026
ORF1ab/nsp31511L1511LTtgCtg14B.1.20.000009
ORF1ab/nsp31511L1511FttGttT34B.1.4290.000071
ORF1ab/nsp31511L1511FttGttC14B.1.4290.000024
ORF1ab/nsp31511L1511MTtgAtg33All0.000001
ORF1ab/nsp31511L1511LttGttA33AY.30.00003
ORF1ab/nsp31511L1511VTtgGtg33AY.390.000074
ORF1ab/nsp31511L1511delTTG---33B.1.1.2180.023077
ORF1ab/nsp31511L1511XtTgtAg23B.1.1.70.000002
ORF1ab/nsp31511L1511XtTGtAA13B.1.1.70.000001
ORF1ab/nsp31511L1511LttGttA33B.1.1600.000094
ORF1ab/nsp31511L1511delTTG---33B.1.1770.00004
ORF1ab/nsp31511L1511delTTG---33B.1.4110.011111
ORF1ab/nsp31511L1511FttGttT33B.1.5250.000339
ORF1ab/nsp31511L1511LttGttA220.111111
ORF1ab/nsp31511L1511QTTgCAg220.111111
ORF1ab/nsp31511L1511FttGttT220.111111
ORF1ab/nsp31511L1511ITtGAtA22All0
ORF1ab/nsp31511L1511RTTgCGg22All0
ORF1ab/nsp31511L1511del2TTG--N12All0
ORF1ab/nsp31511L1511GTTgGGg12All0
ORF1ab/nsp31511L1511GTTGGGA12All0
ORF1ab/nsp31511L1511del2tTGt--12All0
ORF1ab/nsp31511L1511MTtgAtg22AY.1000.000092
ORF1ab/nsp31511L1511FttGttT22AY.1170.000169
ORF1ab/nsp31511L1511StTgtCg22AY.290.000032
ORF1ab/nsp31511L1511FttGttT22AY.3.10.000171
ORF1ab/nsp31511L1511FttGttT22AY.330.000134
ORF1ab/nsp31511L1511FttGttT22AY.39.10.000079
ORF1ab/nsp31511L1511delTTG---22AY.40.000003
ORF1ab/nsp31511L1511delTTG---22AY.420.00008
ORF1ab/nsp31511L1511LTtgCtg22AY.420.00008
ORF1ab/nsp31511L1511FttGttT22AY.420.00008
ORF1ab/nsp31511L1511delTTG---22AY.430.000009
ORF1ab/nsp31511L1511LTtgCtg12AY.430.000004
ORF1ab/nsp31511L1511LttGttA12AY.430.000004
ORF1ab/nsp31511L1511VTtgGtg22AY.440.000012
ORF1ab/nsp31511L1511FttGttT22AY.460.000208
ORF1ab/nsp31511L1511FttGttT22AY.7.20.001119
ORF1ab/nsp31511L1511del1ttGtt-22B.10.000018
ORF1ab/nsp31511L1511VTtgGtg22B.1.1260.002551
ORF1ab/nsp31511L1511FttGttT22B.1.1770.000026
ORF1ab/nsp31511L1511delTTG---22B.1.177.620.002384
ORF1ab/nsp31511L1511StTgtCg22B.1.20.000018
ORF1ab/nsp31511L1511LttGttA22B.1.3510.000059
ORF1ab/nsp31511L1511FttGttT22B.1.5090.001732
ORF1ab/nsp31511L1511FttGttT22B.1.5960.000174
ORF1ab/nsp31511L1511StTgtCg22B.1.617.20.000008
ORF1ab/nsp31511L1511delTTG---22B.1.6210.000177
ORF1ab/nsp31511L1511StTgtCg22C.36.30.001134
ORF1ab/nsp31511L1511GTTGGGA12P.10.000016
ORF1ab/nsp31511L1511VTtgGtg12P.10.000016
ORF1ab/nsp31511L1511GTTgGGg12P.10.000016
ORF1ab/nsp31511L1511VTtGGtA12P.10.000016
ORF1ab/nsp31511L1511LttGttA22Q.10.000253
ORF1ab/nsp31511L1511LttGttA22Q.80.00033
ORF1ab/nsp31511L1511XtTgtAg11A.20.000662
ORF1ab/nsp31511L1511WtTgtGg11A.2.40.003367
ORF1ab/nsp31511L1511delTTG---11AD.20.000219
ORF1ab/nsp31511L1511XtTgtAg11AY.1000.000046
ORF1ab/nsp31511L1511LttGttA11AY.1000.000046
ORF1ab/nsp31511L1511delTTG---11AY.1010.00049
ORF1ab/nsp31511L1511VTtgGtg11AY.1020.000027
ORF1ab/nsp31511L1511LttGttA11AY.1040.001984
ORF1ab/nsp31511L1511FttGttT11AY.1060.000335
ORF1ab/nsp31511L1511FttGttT11AY.1070.000466
ORF1ab/nsp31511L1511FttGttT11AY.1100.000113
ORF1ab/nsp31511L1511FttGttT11AY.1110.000183
ORF1ab/nsp31511L1511LttGttA11AY.1130.000142
ORF1ab/nsp31511L1511FttGttT11AY.1190.000035
ORF1ab/nsp31511L1511StTgtCg11AY.1200.000037
ORF1ab/nsp31511L1511VTtgGtg11AY.1200.000037
ORF1ab/nsp31511L1511delTTG---11AY.1200.000037
ORF1ab/nsp31511L1511LttGttA11AY.140.000088
ORF1ab/nsp31511L1511FttGttT11AY.190.00114
ORF1ab/nsp31511L1511LttGttA11AY.200.000039
ORF1ab/nsp31511L1511FttGttT11AY.200.000039
ORF1ab/nsp31511L1511FttGttT11AY.230.00007
ORF1ab/nsp31511L1511LTtgCtg11AY.250.000006
ORF1ab/nsp31511L1511delTTG---11AY.250.000006
ORF1ab/nsp31511L1511FttGttT11AY.260.000028
ORF1ab/nsp31511L1511FttGttT11AY.290.000016
ORF1ab/nsp31511L1511del1ttGtt-11AY.30.00001
ORF1ab/nsp31511L1511LttGttA11AY.3.10.000085
ORF1ab/nsp31511L1511VTtgGtg11AY.300.000396
ORF1ab/nsp31511L1511delTTG---11AY.360.000148
ORF1ab/nsp31511L1511delTTG---11AY.4.30.000842
ORF1ab/nsp31511L1511LttGttA11AY.4.50.000107
ORF1ab/nsp31511L1511delTTG---11AY.4.50.000107
ORF1ab/nsp31511L1511RTTgCGg11AY.430.000004
ORF1ab/nsp31511L1511RTTgCGg11AY.440.000006
ORF1ab/nsp31511L1511QTTgCAg11AY.440.000006
ORF1ab/nsp31511L1511WtTgtGg11AY.460.000104
ORF1ab/nsp31511L1511VTtgGtg11AY.46.20.000635
ORF1ab/nsp31511L1511FttGttT11AY.46.20.000635
ORF1ab/nsp31511L1511FttGttT11AY.46.60.000072
ORF1ab/nsp31511L1511StTgtCg11AY.46.60.000072
ORF1ab/nsp31511L1511LttGttA11AY.470.000031
ORF1ab/nsp31511L1511delTTG---11AY.50.000021
ORF1ab/nsp31511L1511FttGttT11AY.5.30.000337
ORF1ab/nsp31511L1511FttGttT11AY.530.000288
ORF1ab/nsp31511L1511FttGttT11AY.550.000917
ORF1ab/nsp31511L1511LttGttA11AY.60.000041
ORF1ab/nsp31511L1511LttGttA11AY.610.000105
ORF1ab/nsp31511L1511FttGttT11AY.630.000387
ORF1ab/nsp31511L1511delTTG---11AY.660.00107
ORF1ab/nsp31511L1511LttGttA11AY.690.000187
ORF1ab/nsp31511L1511FttGttC11AY.70.000196
ORF1ab/nsp31511L1511XtTgtAg11AY.700.000209
ORF1ab/nsp31511L1511delTTG---11AY.760.004831
ORF1ab/nsp31511L1511ITtGAtA11AY.840.000437
ORF1ab/nsp31511L1511FttGttT11AY.9.20.000037
ORF1ab/nsp31511L1511QTTgCAg11AY.9.20.000037
ORF1ab/nsp31511L1511LttGttA11AY.940.000443
ORF1ab/nsp31511L1511delTTG---11AY.990.001049
ORF1ab/nsp31511L1511del2tTGt--11B.10.000009
ORF1ab/nsp31511L1511WtTgtGg11B.10.000009
ORF1ab/nsp31511L1511FttGttT11B.1.10.000018
ORF1ab/nsp31511L1511VTtgGtg11B.1.10.000018
ORF1ab/nsp31511L1511LttGttA11B.1.1.250.000569
ORF1ab/nsp31511L1511WtTgtGg11B.1.1.330.000421
ORF1ab/nsp31511L1511delTTG---11B.1.1.370.000193
ORF1ab/nsp31511L1511LttGttA11B.1.1.4340.000349
ORF1ab/nsp31511L1511delTTG---11B.1.1.460.004367
ORF1ab/nsp31511L1511delTTG---11B.1.1.4640.001473
ORF1ab/nsp31511L1511LTtgCtg11B.1.1.500.000679
ORF1ab/nsp31511L1511XtTgtAg11B.1.1.5190.00004
ORF1ab/nsp31511L1511delTTG---11B.1.1.5250.005464
ORF1ab/nsp31511L1511FttGttT11B.1.1.610.008772
ORF1ab/nsp31511L1511StTgtCg11B.1.1.70.000001
ORF1ab/nsp31511L1511del1TtG-tN11B.1.1.70.000001
ORF1ab/nsp31511L1511WtTgtGg11B.1.1.70.000001
ORF1ab/nsp31511L1511FttGttT11B.1.110.30.000718
ORF1ab/nsp31511L1511LttGttA11B.1.1490.003425
ORF1ab/nsp31511L1511FttGttT11B.1.1600.000031
ORF1ab/nsp31511L1511FttGttT11B.1.160.160.000929
ORF1ab/nsp31511L1511StTgtCg11B.1.1770.000013
ORF1ab/nsp31511L1511VTtgGtg11B.1.1770.000013
ORF1ab/nsp31511L1511FttGttT11B.1.177.210.000076
ORF1ab/nsp31511L1511FttGttT11B.1.177.560.000668
ORF1ab/nsp31511L1511FttGttC11B.1.177.650.000665
ORF1ab/nsp31511L1511WtTgtGg11B.1.20.000009
ORF1ab/nsp31511L1511VTtgGtg11B.1.20.000009
ORF1ab/nsp31511L1511delTTG---11B.1.2100.002132
ORF1ab/nsp31511L1511FttGttT11B.1.2210.000071
ORF1ab/nsp31511L1511FttGttT11B.1.2400.000216
ORF1ab/nsp31511L1511LttGttA11B.1.2430.00007
ORF1ab/nsp31511L1511FttGttT11B.1.2580.000067
ORF1ab/nsp31511L1511del2TTG--N11B.1.2650.001271
ORF1ab/nsp31511L1511del1ttGtt-11B.1.360.000146
ORF1ab/nsp31511L1511LttGttA11B.1.36.190.009259
ORF1ab/nsp31511L1511StTgtCg11B.1.36.290.000517
ORF1ab/nsp31511L1511FttGttT11B.1.3690.000285
ORF1ab/nsp31511L1511delTTG---11B.1.416.10.001563
ORF1ab/nsp31511L1511MTtgAtg11B.1.4270.00005
ORF1ab/nsp31511L1511VTtgGtg11B.1.4270.00005
ORF1ab/nsp31511L1511WtTgtGg11B.1.4270.00005
ORF1ab/nsp31511L1511LTtgCtg11B.1.4290.000024
ORF1ab/nsp31511L1511VTtgGtg11B.1.4290.000024
ORF1ab/nsp31511L1511VTtgGtg11B.1.4450.011765
ORF1ab/nsp31511L1511delTTG---11B.1.4530.003236
ORF1ab/nsp31511L1511delTTG---11B.1.5260.000024
ORF1ab/nsp31511L1511FttGttT11B.1.5260.000024
ORF1ab/nsp31511L1511XtTgtAg11B.1.5260.000024
ORF1ab/nsp31511L1511delTTG---11B.1.5770.000687
ORF1ab/nsp31511L1511FttGttT11B.1.5880.00091
ORF1ab/nsp31511L1511LttGttA11B.1.5950.000261
ORF1ab/nsp31511L1511LttGttA11B.1.617.10.000129
ORF1ab/nsp31511L1511delTTG---11B.1.617.10.000129
ORF1ab/nsp31511L1511XtTgtAg11B.1.617.20.000004
ORF1ab/nsp31511L1511FttGttT11B.1.6210.000089
ORF1ab/nsp31511L1511XtTgtAg11B.1.6370.000073
ORF1ab/nsp31511L1511FttGttT11B.6.60.000889
ORF1ab/nsp31511L1511ITtGAtA11C.350.000774
ORF1ab/nsp31511L1511StTgtCg11D.20.000075
ORF1ab/nsp31511L1511FttGttT11D.20.000075
ORF1ab/nsp31511L1511XtTGtGA11P.10.000016
ORF1ab/nsp31511L1511WtTgtGg11P.10.000016
ORF1ab/nsp31511L1511StTgtCg11P.10.000016
ORF1ab/nsp31511L1511delTTG---11P.1.150.000232
ORF1ab/nsp31511L1511StTgtCg11P.1.150.000232
ORF1ab/nsp31511L1511LttGttA11Q.20.000613
ORF1ab/nsp31511L1511LttGttA11R.10.00009
ORF1ab/nsp31511L1511FttGttT11R.20.014493

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.