CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 151

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3151L151LL969LsynctTctC8377760.9271213170-3172
ORF1ab/nsp3151L151LL969LsynctTctG837480.05734773170-3172
ORF1ab/nsp3151L151LL969LsynctTctA837130.01553173170-3172
ORF1ab/nsp3151L151FL969FnonsynCttTtt40140113170-3172
ORF1ab/nsp3151L151PL969PnonsyncTtcCt35835813170-3172
ORF1ab/nsp3151L151IL969InonsynCttAtt828213170-3172
ORF1ab/nsp3151L151del1L969del1delcTtc-t787813170-3172
ORF1ab/nsp3151L151RL969RnonsyncTtcGt31300.9677423170-3172
ORF1ab/nsp3151L151RL969RnonsynCTTAGA3110.03225813170-3172
ORF1ab/nsp3151L151VL969VnonsynCttGtt232313170-3172
ORF1ab/nsp3151L151delL969deldelCTT---212113170-3172
ORF1ab/nsp3151L151HL969HnonsyncTtcAt5513170-3172
ORF1ab/nsp3151L151SL969SnonsynCTtTCt1113170-3172
ORF1ab/nsp3151L151NL969NnonsynCTTAAC1113170-3172

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3151L151LctTctC776837All0.000148
ORF1ab/nsp3151L151LctTctG48837All0.000009
ORF1ab/nsp3151L151LctTctA13837All0.000002
ORF1ab/nsp3151L151LctTctC427429AY.250.002568
ORF1ab/nsp3151L151LctTctA2429AY.250.000012
ORF1ab/nsp3151L151FCttTtt401401All0.000077
ORF1ab/nsp3151L151PcTtcCt358358All0.000068
ORF1ab/nsp3151L151PcTtcCt134134B.1.617.20.000505
ORF1ab/nsp3151L151LctTctC122130B.1.1.70.000109
ORF1ab/nsp3151L151LctTctG6130B.1.1.70.000005
ORF1ab/nsp3151L151LctTctA2130B.1.1.70.000002
ORF1ab/nsp3151L151LctTctC7583B.1.617.20.000282
ORF1ab/nsp3151L151LctTctG883B.1.617.20.00003
ORF1ab/nsp3151L151ICttAtt8282All0.000016
ORF1ab/nsp3151L151del1cTtc-t7878All0.000015
ORF1ab/nsp3151L151FCttTtt7878B.1.6210.006904
ORF1ab/nsp3151L151del1cTtc-t6565B.1.1.70.000058
ORF1ab/nsp3151L151FCttTtt3939B.1.1.70.000035
ORF1ab/nsp3151L151PcTtcCt3838AY.40.000059
ORF1ab/nsp3151L151PcTtcCt3838AY.710.018052
ORF1ab/nsp3151L151FCttTtt3232AY.690.005973
ORF1ab/nsp3151L151RcTtcGt3031All0.000006
ORF1ab/nsp3151L151RCTTAGA131All0
ORF1ab/nsp3151L151FCttTtt2424B.1.617.20.00009
ORF1ab/nsp3151L151VCttGtt2323All0.000004
ORF1ab/nsp3151L151PcTtcCt2222AY.470.000684
ORF1ab/nsp3151L151delCTT---2121All0.000004
ORF1ab/nsp3151L151FCttTtt2020B.1.1.1450.740741
ORF1ab/nsp3151L151VCttGtt2020B.1.1.70.000018
ORF1ab/nsp3151L151FCttTtt2020B.1.360.002918
ORF1ab/nsp3151L151FCttTtt1818AY.30.000179
ORF1ab/nsp3151L151LctTctC1818AY.390.000445
ORF1ab/nsp3151L151ICttAtt1616AY.40.000025
ORF1ab/nsp3151L151FCttTtt1616AY.40.000025
ORF1ab/nsp3151L151PcTtcCt1616B.1.1.70.000014
ORF1ab/nsp3151L151PcTtcCt1515AY.250.00009
ORF1ab/nsp3151L151LctTctC1515AY.4.20.000325
ORF1ab/nsp3151L151LctTctC1515B.1.3500.043988
ORF1ab/nsp3151L151FCttTtt1212AY.440.000073
ORF1ab/nsp3151L151PcTtcCt1111AY.320.005857
ORF1ab/nsp3151L151ICttAtt1111B.1.1.70.00001
ORF1ab/nsp3151L151PcTtcCt1111B.1.20.000097
ORF1ab/nsp3151L151FCttTtt1111B.1.258.140.010784
ORF1ab/nsp3151L151LctTctC810AY.40.000012
ORF1ab/nsp3151L151LctTctG110AY.40.000002
ORF1ab/nsp3151L151LctTctA110AY.40.000002
ORF1ab/nsp3151L151ICttAtt99AY.1090.006657
ORF1ab/nsp3151L151LctTctC89AY.30.00008
ORF1ab/nsp3151L151LctTctG19AY.30.00001
ORF1ab/nsp3151L151PcTtcCt88AY.430.000035
ORF1ab/nsp3151L151PcTtcCt88B0.001022
ORF1ab/nsp3151L151LctTctC47AY.1030.000025
ORF1ab/nsp3151L151LctTctG37AY.1030.000019
ORF1ab/nsp3151L151LctTctC67B.10.000055
ORF1ab/nsp3151L151LctTctG17B.10.000009
ORF1ab/nsp3151L151FCttTtt66AY.1130.000854
ORF1ab/nsp3151L151FCttTtt66AY.46.60.000433
ORF1ab/nsp3151L151FCttTtt66AY.540.000572
ORF1ab/nsp3151L151LctTctC36B.1.1770.00004
ORF1ab/nsp3151L151LctTctG26B.1.1770.000026
ORF1ab/nsp3151L151LctTctA16B.1.1770.000013
ORF1ab/nsp3151L151LctTctC66B.1.20.000053
ORF1ab/nsp3151L151LctTctG66B.1.3690.001711
ORF1ab/nsp3151L151LctTctC46B.1.6370.000292
ORF1ab/nsp3151L151LctTctA26B.1.6370.000146
ORF1ab/nsp3151L151HcTtcAt55All0.000001
ORF1ab/nsp3151L151FCttTtt55AY.1020.000133
ORF1ab/nsp3151L151RcTtcGt55AY.40.000008
ORF1ab/nsp3151L151LctTctC55AY.440.00003
ORF1ab/nsp3151L151LctTctC35AY.470.000093
ORF1ab/nsp3151L151LctTctG25AY.470.000062
ORF1ab/nsp3151L151FCttTtt55B.10.000046
ORF1ab/nsp3151L151ICttAtt55B.10.000046
ORF1ab/nsp3151L151FCttTtt55B.1.1770.000066
ORF1ab/nsp3151L151ICttAtt55B.1.4290.000118
ORF1ab/nsp3151L151FCttTtt44AY.1030.000025
ORF1ab/nsp3151L151FCttTtt44AY.1170.000338
ORF1ab/nsp3151L151FCttTtt44AY.430.000018
ORF1ab/nsp3151L151ICttAtt44AY.60.000165
ORF1ab/nsp3151L151PcTtcCt44AY.75.10.000721
ORF1ab/nsp3151L151PcTtcCt44AY.900.002738
ORF1ab/nsp3151L151LctTctC34B.1.10.000054
ORF1ab/nsp3151L151LctTctG14B.1.10.000018
ORF1ab/nsp3151L151ICttAtt44B.1.1.4860.006309
ORF1ab/nsp3151L151RcTtcGt44B.1.1.70.000004
ORF1ab/nsp3151L151delCTT---44B.1.1.70.000004
ORF1ab/nsp3151L151LctTctC44B.1.5960.000349
ORF1ab/nsp3151L151ICttAtt33AY.130.000483
ORF1ab/nsp3151L151PcTtcCt33AY.200.000117
ORF1ab/nsp3151L151PcTtcCt33AY.290.000047
ORF1ab/nsp3151L151PcTtcCt33AY.30.00003
ORF1ab/nsp3151L151FCttTtt33AY.340.000291
ORF1ab/nsp3151L151FCttTtt33AY.470.000093
ORF1ab/nsp3151L151LctTctC33AY.870.002498
ORF1ab/nsp3151L151delCTT---33B.10.000027
ORF1ab/nsp3151L151RcTtcGt23B.10.000018
ORF1ab/nsp3151L151RCTTAGA13B.10.000009
ORF1ab/nsp3151L151LctTctC33B.1.1.10.00098
ORF1ab/nsp3151L151delCTT---33B.1.1.330.001263
ORF1ab/nsp3151L151del1cTtc-t33B.1.177.820.001432
ORF1ab/nsp3151L151FCttTtt33B.1.20.000026
ORF1ab/nsp3151L151del1cTtc-t33B.1.3510.000089
ORF1ab/nsp3151L151LctTctC33B.1.3510.000089
ORF1ab/nsp3151L151ICttAtt33B.1.617.20.000011
ORF1ab/nsp3151L151LctTctC23B.1.6210.000177
ORF1ab/nsp3151L151LctTctG13B.1.6210.000089
ORF1ab/nsp3151L151RcTtcGt33B.1.6370.000219
ORF1ab/nsp3151L151LctTctA13P.10.000016
ORF1ab/nsp3151L151LctTctG13P.10.000016
ORF1ab/nsp3151L151LctTctC13P.10.000016
ORF1ab/nsp3151L151LctTctG120.055556
ORF1ab/nsp3151L151LctTctC120.055556
ORF1ab/nsp3151L151FCttTtt22AY.100.00106
ORF1ab/nsp3151L151PcTtcCt22AY.100.00106
ORF1ab/nsp3151L151RcTtcGt22AY.1030.000012
ORF1ab/nsp3151L151LctTctC22AY.1140.000462
ORF1ab/nsp3151L151LctTctC22AY.116.10.000623
ORF1ab/nsp3151L151FCttTtt22AY.116.10.000623
ORF1ab/nsp3151L151FCttTtt22AY.250.000012
ORF1ab/nsp3151L151FCttTtt22AY.270.000129
ORF1ab/nsp3151L151RcTtcGt22AY.290.000032
ORF1ab/nsp3151L151FCttTtt22AY.370.000632
ORF1ab/nsp3151L151FCttTtt22AY.390.000049
ORF1ab/nsp3151L151PcTtcCt22AY.390.000049
ORF1ab/nsp3151L151ICttAtt22AY.430.000009
ORF1ab/nsp3151L151PcTtcCt22AY.440.000012
ORF1ab/nsp3151L151RcTtcGt22AY.470.000062
ORF1ab/nsp3151L151del1cTtc-t22AY.520.001629
ORF1ab/nsp3151L151PcTtcCt22AY.600.001876
ORF1ab/nsp3151L151FCttTtt22AY.610.00021
ORF1ab/nsp3151L151FCttTtt22AY.620.000871
ORF1ab/nsp3151L151FCttTtt22AY.850.000854
ORF1ab/nsp3151L151PcTtcCt22B.10.000018
ORF1ab/nsp3151L151FCttTtt22B.1.10.000036
ORF1ab/nsp3151L151PcTtcCt22B.1.1.250.001137
ORF1ab/nsp3151L151ICttAtt22B.1.1.250.001137
ORF1ab/nsp3151L151delCTT---22B.1.1.3480.001592
ORF1ab/nsp3151L151LctTctC22B.1.1.5190.000079
ORF1ab/nsp3151L151HcTtcAt22B.1.1.70.000002
ORF1ab/nsp3151L151del1cTtc-t22B.1.1600.000062
ORF1ab/nsp3151L151FCttTtt22B.1.2430.000139
ORF1ab/nsp3151L151FCttTtt22B.1.2580.000133
ORF1ab/nsp3151L151VCttGtt22B.1.5250.000226
ORF1ab/nsp3151L151FCttTtt22B.1.5260.000047
ORF1ab/nsp3151L151LctTctC22B.1.5260.000047
ORF1ab/nsp3151L151LctTctC22B.1.5650.001621
ORF1ab/nsp3151L151FCttTtt22B.1.5960.000174
ORF1ab/nsp3151L151RcTtcGt22B.1.617.20.000008
ORF1ab/nsp3151L151FCttTtt22B.1.6250.004706
ORF1ab/nsp3151L151FCttTtt22C.260.014706
ORF1ab/nsp3151L151LctTctC22D.20.00015
ORF1ab/nsp3151L151delCTT---22N.60.014184
ORF1ab/nsp3151L151LctTctC22R.10.00018
ORF1ab/nsp3151L151FCttTtt110.055556
ORF1ab/nsp3151L151SCTtTCt110.055556
ORF1ab/nsp3151L151PcTtcCt110.055556
ORF1ab/nsp3151L151ICttAtt11A0.000387
ORF1ab/nsp3151L151PcTtcCt11A0.000387
ORF1ab/nsp3151L151LctTctC11A.10.000282
ORF1ab/nsp3151L151PcTtcCt11A.10.000282
ORF1ab/nsp3151L151HcTtcAt11A.10.000282
ORF1ab/nsp3151L151PcTtcCt11A.2.20.001689
ORF1ab/nsp3151L151FCttTtt11A.2.20.001689
ORF1ab/nsp3151L151LctTctC11A.2.50.000499
ORF1ab/nsp3151L151PcTtcCt11AD.20.000219
ORF1ab/nsp3151L151SCTtTCt11All0
ORF1ab/nsp3151L151NCTTAAC11All0
ORF1ab/nsp3151L151PcTtcCt11AY.1000.000046
ORF1ab/nsp3151L151LctTctC11AY.1000.000046
ORF1ab/nsp3151L151LctTctC11AY.1020.000027
ORF1ab/nsp3151L151PcTtcCt11AY.1030.000006
ORF1ab/nsp3151L151FCttTtt11AY.1070.000466
ORF1ab/nsp3151L151FCttTtt11AY.1080.001103
ORF1ab/nsp3151L151PcTtcCt11AY.1100.000113
ORF1ab/nsp3151L151FCttTtt11AY.1110.000183
ORF1ab/nsp3151L151NCTTAAC11AY.1140.000231
ORF1ab/nsp3151L151FCttTtt11AY.1160.000287
ORF1ab/nsp3151L151PcTtcCt11AY.1180.000063
ORF1ab/nsp3151L151LctTctC11AY.1190.000035
ORF1ab/nsp3151L151LctTctG11AY.1200.000037
ORF1ab/nsp3151L151PcTtcCt11AY.140.000088
ORF1ab/nsp3151L151LctTctG11AY.160.00038
ORF1ab/nsp3151L151PcTtcCt11AY.16.10.00047
ORF1ab/nsp3151L151LctTctC11AY.200.000039
ORF1ab/nsp3151L151RcTtcGt11AY.200.000039
ORF1ab/nsp3151L151ICttAtt11AY.230.00007
ORF1ab/nsp3151L151LctTctG11AY.230.00007
ORF1ab/nsp3151L151PcTtcCt11AY.240.000431
ORF1ab/nsp3151L151FCttTtt11AY.260.000028
ORF1ab/nsp3151L151PcTtcCt11AY.260.000028
ORF1ab/nsp3151L151ICttAtt11AY.260.000028
ORF1ab/nsp3151L151FCttTtt11AY.290.000016
ORF1ab/nsp3151L151ICttAtt11AY.30.00001
ORF1ab/nsp3151L151FCttTtt11AY.3.10.000085
ORF1ab/nsp3151L151FCttTtt11AY.300.000396
ORF1ab/nsp3151L151FCttTtt11AY.330.000067
ORF1ab/nsp3151L151FCttTtt11AY.34.10.00051
ORF1ab/nsp3151L151PcTtcCt11AY.350.000233
ORF1ab/nsp3151L151FCttTtt11AY.350.000233
ORF1ab/nsp3151L151PcTtcCt11AY.370.000316
ORF1ab/nsp3151L151FCttTtt11AY.39.10.00004
ORF1ab/nsp3151L151RcTtcGt11AY.430.000004
ORF1ab/nsp3151L151LctTctG11AY.430.000004
ORF1ab/nsp3151L151ICttAtt11AY.440.000006
ORF1ab/nsp3151L151FCttTtt11AY.450.000122
ORF1ab/nsp3151L151PcTtcCt11AY.460.000104
ORF1ab/nsp3151L151LctTctC11AY.460.000104
ORF1ab/nsp3151L151LctTctC11AY.46.20.000635
ORF1ab/nsp3151L151LctTctC11AY.46.60.000072
ORF1ab/nsp3151L151FCttTtt11AY.50.000021
ORF1ab/nsp3151L151LctTctA11AY.50.000021
ORF1ab/nsp3151L151ICttAtt11AY.50.000021
ORF1ab/nsp3151L151PcTtcCt11AY.50.000021
ORF1ab/nsp3151L151LctTctG11AY.5.40.000277
ORF1ab/nsp3151L151ICttAtt11AY.520.000814
ORF1ab/nsp3151L151LctTctC11AY.540.000095
ORF1ab/nsp3151L151ICttAtt11AY.590.00053
ORF1ab/nsp3151L151LctTctG11AY.60.000041
ORF1ab/nsp3151L151LctTctG11AY.610.000105
ORF1ab/nsp3151L151delCTT---11AY.610.000105
ORF1ab/nsp3151L151LctTctG11AY.650.000533
ORF1ab/nsp3151L151LctTctC11AY.70.000196
ORF1ab/nsp3151L151FCttTtt11AY.700.000209
ORF1ab/nsp3151L151FCttTtt11AY.730.000665
ORF1ab/nsp3151L151PcTtcCt11AY.750.000056
ORF1ab/nsp3151L151FCttTtt11AY.750.000056
ORF1ab/nsp3151L151FCttTtt11AY.75.10.00018
ORF1ab/nsp3151L151ICttAtt11AY.770.001127
ORF1ab/nsp3151L151LctTctG11AY.840.000437
ORF1ab/nsp3151L151PcTtcCt11AY.850.000427
ORF1ab/nsp3151L151RcTtcGt11AY.850.000427
ORF1ab/nsp3151L151PcTtcCt11AY.870.000833
ORF1ab/nsp3151L151FCttTtt11AY.90.000068
ORF1ab/nsp3151L151LctTctC11AY.950.000761
ORF1ab/nsp3151L151PcTtcCt11AY.99.10.001553
ORF1ab/nsp3151L151ICttAtt11B0.000128
ORF1ab/nsp3151L151VCttGtt11B.10.000009
ORF1ab/nsp3151L151PcTtcCt11B.1.10.000018
ORF1ab/nsp3151L151delCTT---11B.1.10.000018
ORF1ab/nsp3151L151ICttAtt11B.1.10.000018
ORF1ab/nsp3151L151delCTT---11B.1.1.1450.037037
ORF1ab/nsp3151L151FCttTtt11B.1.1.2220.000204
ORF1ab/nsp3151L151FCttTtt11B.1.1.2340.012048
ORF1ab/nsp3151L151delCTT---11B.1.1.2840.000107
ORF1ab/nsp3151L151LctTctC11B.1.1.330.000421
ORF1ab/nsp3151L151RcTtcGt11B.1.1.3720.000689
ORF1ab/nsp3151L151FCttTtt11B.1.1.390.00051
ORF1ab/nsp3151L151FCttTtt11B.1.1.3910.008547
ORF1ab/nsp3151L151LctTctG11B.1.1.4290.004608
ORF1ab/nsp3151L151FCttTtt11B.1.1.4340.000349
ORF1ab/nsp3151L151FCttTtt11B.1.1.470.005348
ORF1ab/nsp3151L151RcTtcGt11B.1.1.5190.00004
ORF1ab/nsp3151L151ICttAtt11B.1.1040.00369
ORF1ab/nsp3151L151LctTctG11B.1.110.30.000718
ORF1ab/nsp3151L151FCttTtt11B.1.110.30.000718
ORF1ab/nsp3151L151LctTctC11B.1.1600.000031
ORF1ab/nsp3151L151PcTtcCt11B.1.1600.000031
ORF1ab/nsp3151L151PcTtcCt11B.1.160.140.002119
ORF1ab/nsp3151L151ICttAtt11B.1.1770.000013
ORF1ab/nsp3151L151FCttTtt11B.1.177.120.000152
ORF1ab/nsp3151L151LctTctC11B.1.177.210.000076
ORF1ab/nsp3151L151LctTctC11B.1.177.540.000606
ORF1ab/nsp3151L151del1cTtc-t11B.1.177.60.000977
ORF1ab/nsp3151L151FCttTtt11B.1.177.650.000665
ORF1ab/nsp3151L151FCttTtt11B.1.177.860.000183
ORF1ab/nsp3151L151LctTctG11B.1.1950.005025
ORF1ab/nsp3151L151PcTtcCt11B.1.2430.00007
ORF1ab/nsp3151L151LctTctC11B.1.258.170.000104
ORF1ab/nsp3151L151ICttAtt11B.1.258.170.000104
ORF1ab/nsp3151L151ICttAtt11B.1.3010.005917
ORF1ab/nsp3151L151RcTtcGt11B.1.3110.000275
ORF1ab/nsp3151L151FCttTtt11B.1.3110.000275
ORF1ab/nsp3151L151delCTT---11B.1.3510.00003
ORF1ab/nsp3151L151FCttTtt11B.1.3510.00003
ORF1ab/nsp3151L151del1cTtc-t11B.1.36.10.00114
ORF1ab/nsp3151L151FCttTtt11B.1.36.220.001208
ORF1ab/nsp3151L151FCttTtt11B.1.36.360.000602
ORF1ab/nsp3151L151FCttTtt11B.1.36.80.001
ORF1ab/nsp3151L151FCttTtt11B.1.36.90.003215
ORF1ab/nsp3151L151ICttAtt11B.1.3610.001289
ORF1ab/nsp3151L151LctTctA11B.1.3980.002976
ORF1ab/nsp3151L151LctTctC11B.1.4090.000781
ORF1ab/nsp3151L151LctTctG11B.1.4270.00005
ORF1ab/nsp3151L151LctTctC11B.1.4280.00102
ORF1ab/nsp3151L151LctTctC11B.1.4290.000024
ORF1ab/nsp3151L151delCTT---11B.1.4290.000024
ORF1ab/nsp3151L151LctTctA11B.1.438.10.000107
ORF1ab/nsp3151L151FCttTtt11B.1.4560.003268
ORF1ab/nsp3151L151FCttTtt11B.1.4620.007246
ORF1ab/nsp3151L151LctTctC11B.1.5240.001406
ORF1ab/nsp3151L151FCttTtt11B.1.5300.007143
ORF1ab/nsp3151L151delCTT---11B.1.5610.000397
ORF1ab/nsp3151L151PcTtcCt11B.1.5960.000087
ORF1ab/nsp3151L151FCttTtt11B.1.617.10.000129
ORF1ab/nsp3151L151RcTtcGt11B.1.617.10.000129
ORF1ab/nsp3151L151HcTtcAt11B.1.617.20.000004
ORF1ab/nsp3151L151ICttAtt11B.1.6210.000089
ORF1ab/nsp3151L151ICttAtt11B.1.6230.000536
ORF1ab/nsp3151L151PcTtcCt11B.1.6370.000073
ORF1ab/nsp3151L151LctTctC11B.520.010101
ORF1ab/nsp3151L151LctTctC11C.370.000116
ORF1ab/nsp3151L151FCttTtt11C.370.000116
ORF1ab/nsp3151L151FCttTtt11D.20.000075
ORF1ab/nsp3151L151FCttTtt11P.10.000016
ORF1ab/nsp3151L151HcTtcAt11P.10.000016
ORF1ab/nsp3151L151PcTtcCt11P.10.000016
ORF1ab/nsp3151L151LctTctA11P.1.160.000374
ORF1ab/nsp3151L151LctTctG11P.1.170.000162
ORF1ab/nsp3151L151FCttTtt11P.50.013699
ORF1ab/nsp3151L151RcTtcGt11P.60.003145
ORF1ab/nsp3151L151del1cTtc-t11R.10.00009