CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 151 | L151L | L969L | syn | ctT | ctC | 837 | 776 | 0.927121 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151L | L969L | syn | ctT | ctG | 837 | 48 | 0.0573477 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151L | L969L | syn | ctT | ctA | 837 | 13 | 0.0155317 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151F | L969F | nonsyn | Ctt | Ttt | 401 | 401 | 1 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151P | L969P | nonsyn | cTt | cCt | 358 | 358 | 1 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151I | L969I | nonsyn | Ctt | Att | 82 | 82 | 1 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151del1 | L969del1 | del | cTt | c-t | 78 | 78 | 1 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151R | L969R | nonsyn | cTt | cGt | 31 | 30 | 0.967742 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151R | L969R | nonsyn | CTT | AGA | 31 | 1 | 0.0322581 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151V | L969V | nonsyn | Ctt | Gtt | 23 | 23 | 1 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151del | L969del | del | CTT | --- | 21 | 21 | 1 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151H | L969H | nonsyn | cTt | cAt | 5 | 5 | 1 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151S | L969S | nonsyn | CTt | TCt | 1 | 1 | 1 | 3170-3172 |
ORF1ab/nsp3 | 151 | L151N | L969N | nonsyn | CTT | AAC | 1 | 1 | 1 | 3170-3172 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 776 | 837 | All | 0.000148 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 48 | 837 | All | 0.000009 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 13 | 837 | All | 0.000002 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 427 | 429 | AY.25 | 0.002568 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 2 | 429 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 401 | 401 | All | 0.000077 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 358 | 358 | All | 0.000068 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 134 | 134 | B.1.617.2 | 0.000505 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 122 | 130 | B.1.1.7 | 0.000109 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 6 | 130 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 2 | 130 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 75 | 83 | B.1.617.2 | 0.000282 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 8 | 83 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 82 | 82 | All | 0.000016 |
ORF1ab/nsp3 | 151 | L151del1 | cTt | c-t | 78 | 78 | All | 0.000015 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 78 | 78 | B.1.621 | 0.006904 |
ORF1ab/nsp3 | 151 | L151del1 | cTt | c-t | 65 | 65 | B.1.1.7 | 0.000058 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 39 | 39 | B.1.1.7 | 0.000035 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 38 | 38 | AY.4 | 0.000059 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 38 | 38 | AY.71 | 0.018052 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 32 | 32 | AY.69 | 0.005973 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 30 | 31 | All | 0.000006 |
ORF1ab/nsp3 | 151 | L151R | CTT | AGA | 1 | 31 | All | 0 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp3 | 151 | L151V | Ctt | Gtt | 23 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 22 | 22 | AY.47 | 0.000684 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 21 | 21 | All | 0.000004 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 20 | 20 | B.1.1.145 | 0.740741 |
ORF1ab/nsp3 | 151 | L151V | Ctt | Gtt | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 20 | 20 | B.1.36 | 0.002918 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 15 | 15 | AY.4.2 | 0.000325 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 15 | 15 | B.1.350 | 0.043988 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 11 | 11 | AY.32 | 0.005857 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 11 | 11 | B.1.258.14 | 0.010784 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 8 | 10 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 10 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 1 | 10 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 9 | 9 | AY.109 | 0.006657 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 8 | 9 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 9 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 8 | 8 | B | 0.001022 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 4 | 7 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 3 | 7 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 6 | 7 | B.1 | 0.000055 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 7 | B.1 | 0.000009 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 3 | 6 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 2 | 6 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 1 | 6 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 4 | 6 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 2 | 6 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 151 | L151H | cTt | cAt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 3 | 5 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 2 | 5 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 4 | 4 | AY.90 | 0.002738 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 4 | 4 | B.1.1.486 | 0.006309 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp3 | 151 | L151R | CTT | AGA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 151 | L151del1 | cTt | c-t | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 151 | L151del1 | cTt | c-t | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 2 | 3 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 3 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 151 | L151del1 | cTt | c-t | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 151 | L151H | cTt | cAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 151 | L151del1 | cTt | c-t | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 151 | L151V | Ctt | Gtt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 2 | 2 | C.26 | 0.014706 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 151 | L151S | CTt | TCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 151 | L151H | cTt | cAt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 151 | L151S | CTt | TCt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 151 | L151N | CTT | AAC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 151 | L151N | CTT | AAC | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 151 | L151V | Ctt | Gtt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 1 | 1 | B.1.1.145 | 0.037037 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.1.234 | 0.012048 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 151 | L151del1 | cTt | c-t | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 151 | L151del1 | cTt | c-t | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 151 | L151del | CTT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 151 | L151H | cTt | cAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 151 | L151I | Ctt | Att | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 151 | L151H | cTt | cAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 151 | L151P | cTt | cCt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctA | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 151 | L151L | ctT | ctG | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 151 | L151F | Ctt | Ttt | 1 | 1 | P.5 | 0.013699 |
ORF1ab/nsp3 | 151 | L151R | cTt | cGt | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 151 | L151del1 | cTt | c-t | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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