CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1504 | G1504G | G2322G | syn | ggC | ggT | 1192 | 1063 | 0.891779 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504G | G2322G | syn | ggC | ggA | 1192 | 124 | 0.104027 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504G | G2322G | syn | ggC | ggG | 1192 | 5 | 0.00419463 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504C | G2322C | nonsyn | Ggc | Tgc | 281 | 281 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504S | G2322S | nonsyn | Ggc | Agc | 89 | 89 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504del | G2322del | del | GGC | --- | 85 | 85 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504V | G2322V | nonsyn | gGc | gTc | 32 | 31 | 0.96875 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504V | G2322V | nonsyn | gGC | gTT | 32 | 1 | 0.03125 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504D | G2322D | nonsyn | gGc | gAc | 16 | 16 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504A | G2322A | nonsyn | gGc | gCc | 7 | 6 | 0.857143 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504A | G2322A | nonsyn | gGC | gCG | 7 | 1 | 0.142857 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504del1 | G2322del1 | del | GgC | -gT | 6 | 3 | 0.5 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504del1 | G2322del1 | del | ggC | gg- | 6 | 2 | 0.333333 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504del1 | G2322del1 | del | Ggc | -gc | 6 | 1 | 0.166667 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504N | G2322N | nonsyn | GGc | AAc | 3 | 3 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504I | G2322I | nonsyn | GGc | ATc | 3 | 3 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504R | G2322R | nonsyn | Ggc | Cgc | 2 | 2 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504W | G2322W | nonsyn | GgC | TgG | 1 | 1 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504del2 | G2322del2 | del | gGC | g-- | 1 | 1 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504T | G2322T | nonsyn | GGC | ACT | 1 | 1 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504L | G2322L | nonsyn | GGc | CTc | 1 | 1 | 1 | 7229-7231 |
ORF1ab/nsp3 | 1504 | G1504E | G2322E | nonsyn | gGC | gAA | 1 | 1 | 1 | 7229-7231 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1063 | 1192 | All | 0.000203 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 124 | 1192 | All | 0.000024 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggG | 5 | 1192 | All | 0.000001 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 351 | 351 | B.1.1.351 | 0.980447 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 281 | 281 | All | 0.000054 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 133 | 210 | B.1.1.7 | 0.000119 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 77 | 210 | B.1.1.7 | 0.000069 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 101 | 101 | AY.4 | 0.000157 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 89 | 89 | All | 0.000017 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 85 | 85 | All | 0.000016 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 69 | 84 | AY.4 | 0.000107 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 14 | 84 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggG | 1 | 84 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 80 | 80 | AY.5 | 0.001652 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 39 | 39 | AY.3 | 0.000388 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 33 | 33 | AY.4.5 | 0.003547 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 31 | 32 | All | 0.000006 |
ORF1ab/nsp3 | 1504 | G1504V | gGC | gTT | 1 | 32 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 30 | 31 | B.1.1 | 0.000544 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 31 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 21 | 21 | B.1.1.296 | 0.381818 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 16 | 16 | All | 0.000003 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 13 | 16 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 2 | 16 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggG | 1 | 16 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 13 | 13 | P.2 | 0.002426 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 11 | 12 | AY.44 | 0.000067 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 12 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 12 | 12 | B.1.567 | 0.04 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 10 | 10 | B.1.416.1 | 0.015625 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp3 | 1504 | G1504A | gGc | gCc | 6 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1504 | G1504A | gGC | gCG | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 7 | 7 | AY.37 | 0.002212 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp3 | 1504 | G1504del1 | GgC | -gT | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1504 | G1504del1 | ggC | gg- | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504del1 | Ggc | -gc | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 5 | 6 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 6 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 3 | 6 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 3 | 6 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 1504 | G1504N | GGc | AAc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1504 | G1504I | GGc | ATc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 3 | 3 | B.1.1.218 | 0.023077 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 3 | 3 | B.1.632 | 0.020134 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp3 | 1504 | G1504I | GGc | ATc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1504 | G1504R | Ggc | Cgc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 2 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 2 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggG | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1504 | G1504del1 | GgC | -gT | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1504 | G1504W | GgC | TgG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1504 | G1504E | gGC | gAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504del2 | gGC | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504L | GGc | CTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504T | GGC | ACT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504W | GgC | TgG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1504 | G1504A | gGc | gCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1504 | G1504del1 | Ggc | -gc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1504 | G1504A | gGc | gCc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1504 | G1504R | Ggc | Cgc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1504 | G1504A | gGc | gCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1504 | G1504I | GGc | ATc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1504 | G1504del1 | GgC | -gT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1504 | G1504N | GGc | AAc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1504 | G1504L | GGc | CTc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1504 | G1504del1 | ggC | gg- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1504 | G1504A | gGc | gCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1504 | G1504N | GGc | AAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1504 | G1504V | gGC | gTT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.177 | 0.019231 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp3 | 1504 | G1504A | gGC | gCG | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.384 | 0.02381 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.40 | 0.034483 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1504 | G1504R | Ggc | Cgc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1504 | G1504A | gGc | gCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1504 | G1504del2 | gGC | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1504 | G1504E | gGC | gAA | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1504 | G1504del1 | ggC | gg- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1504 | G1504T | GGC | ACT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggG | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggA | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1504 | G1504N | GGc | AAc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1504 | G1504V | gGc | gTc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1504 | G1504A | gGc | gCc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1504 | G1504del | GGC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1504 | G1504C | Ggc | Tgc | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp3 | 1504 | G1504S | Ggc | Agc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1504 | G1504D | gGc | gAc | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp3 | 1504 | G1504G | ggC | ggT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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