CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1502 | A1502V | A2320V | nonsyn | gCt | gTt | 4063 | 4062 | 0.999754 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502V | A2320V | nonsyn | gCT | gTG | 4063 | 1 | 0.000246124 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502T | A2320T | nonsyn | Gct | Act | 302 | 302 | 1 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502A | A2320A | syn | gcT | gcC | 235 | 181 | 0.770213 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502A | A2320A | syn | gcT | gcG | 235 | 40 | 0.170213 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502A | A2320A | syn | gcT | gcA | 235 | 14 | 0.0595745 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502del | A2320del | del | GCT | --- | 86 | 86 | 1 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502S | A2320S | nonsyn | Gct | Tct | 39 | 38 | 0.974359 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502S | A2320S | nonsyn | GcT | TcA | 39 | 1 | 0.025641 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502del1 | A2320del1 | del | gcT | gc- | 24 | 22 | 0.916667 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502del1 | A2320del1 | del | GCt | -Tt | 24 | 1 | 0.0416667 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502del1 | A2320del1 | del | GcT | Rc- | 24 | 1 | 0.0416667 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502D | A2320D | nonsyn | gCt | gAt | 21 | 21 | 1 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502N | A2320N | nonsyn | GCt | AAt | 10 | 10 | 1 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502G | A2320G | nonsyn | gCt | gGt | 9 | 8 | 0.888889 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502G | A2320G | nonsyn | gCT | gGC | 9 | 1 | 0.111111 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502P | A2320P | nonsyn | Gct | Cct | 6 | 6 | 1 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502Y | A2320Y | nonsyn | GCt | TAt | 5 | 5 | 1 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502E | A2320E | nonsyn | gCT | gAA | 2 | 1 | 0.5 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502E | A2320E | nonsyn | gCT | gAG | 2 | 1 | 0.5 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502R | A2320R | nonsyn | GCt | CGt | 1 | 1 | 1 | 7223-7225 |
ORF1ab/nsp3 | 1502 | A1502X | A2320X | nonsyn | GCT | TAA | 1 | 1 | 1 | 7223-7225 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 4062 | 4063 | All | 0.000777 |
ORF1ab/nsp3 | 1502 | A1502V | gCT | gTG | 1 | 4063 | All | 0 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1960 | 1960 | Q.4 | 0.891314 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 602 | 602 | B.1.258.16 | 0.98527 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 409 | 409 | B.1.1.7 | 0.000366 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 302 | 302 | All | 0.000058 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 181 | 235 | All | 0.000035 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 40 | 235 | All | 0.000008 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcA | 14 | 235 | All | 0.000003 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 193 | 193 | AY.4 | 0.0003 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 86 | 86 | All | 0.000016 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 78 | 78 | B.1.617.2 | 0.000294 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 73 | 73 | B.1.110.3 | 0.052443 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 59 | 59 | B.1.1.328 | 1 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 51 | 52 | B.1.1 | 0.000925 |
ORF1ab/nsp3 | 1502 | A1502V | gCT | gTG | 1 | 52 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 47 | 47 | AY.44 | 0.000286 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 47 | 47 | B.4.4 | 0.886792 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 44 | 44 | B.1.406 | 0.266667 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 41 | 41 | AY.20 | 0.001593 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 38 | 39 | All | 0.000007 |
ORF1ab/nsp3 | 1502 | A1502S | GcT | TcA | 1 | 39 | All | 0 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 35 | 35 | AY.43 | 0.000155 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 34 | 34 | B.1.2 | 0.000299 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 34 | 34 | B.1.526 | 0.000799 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 33 | 33 | B.1.160 | 0.001029 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 33 | 33 | Q.8 | 0.005442 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 31 | 31 | AY.103 | 0.000192 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 15 | 25 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcA | 8 | 25 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 2 | 25 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 25 | 25 | C.35 | 0.01935 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 22 | 24 | All | 0.000004 |
ORF1ab/nsp3 | 1502 | A1502del1 | GcT | Rc- | 1 | 24 | All | 0 |
ORF1ab/nsp3 | 1502 | A1502del1 | GCt | -Tt | 1 | 24 | All | 0 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 24 | 24 | AY.47 | 0.000747 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 23 | 23 | B.1 | 0.000211 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 21 | 21 | All | 0.000004 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 19 | 19 | AY.102 | 0.000504 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 10 | 19 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 7 | 19 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcA | 2 | 19 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 16 | 16 | B.1.234 | 0.002111 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 14 | 14 | AY.72 | 0.019048 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 11 | 12 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 1 | 12 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 12 | 12 | P.1.7 | 0.003831 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp3 | 1502 | A1502N | GCt | AAt | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 9 | 10 | B.1 | 0.000082 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 1 | 10 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 10 | 10 | B.1.1.70 | 0.003411 |
ORF1ab/nsp3 | 1502 | A1502G | gCt | gGt | 8 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 1502 | A1502G | gCT | gGC | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 9 | 9 | AY.111 | 0.001648 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 9 | 9 | B.1.482 | 0.75 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 7 | 8 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 1 | 8 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 7 | 7 | AY.81 | 0.013944 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 7 | 7 | B.1.1.397 | 0.015766 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 7 | 7 | C.16 | 0.007423 |
ORF1ab/nsp3 | 1502 | A1502P | Gct | Cct | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 6 | 6 | B.1.236 | 0.01232 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp3 | 1502 | A1502N | GCt | AAt | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 1502 | A1502Y | GCt | TAt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 5 | 5 | B.4 | 0.011038 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1502 | A1502G | gCt | gGt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1502 | A1502P | Gct | Cct | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 1 | 3 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcA | 1 | 3 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 3 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 3 | 3 | B.1.1.218 | 0.023077 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1502 | A1502G | gCt | gGt | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1502 | A1502G | gCT | gGC | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1502 | A1502S | GcT | TcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1502 | A1502E | gCT | gAA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1502 | A1502E | gCT | gAG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1502 | A1502N | GCt | AAt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1502 | A1502del1 | GCt | -Tt | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | B.1.428.3 | 0.025641 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | B.1.471 | 0.005464 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp3 | 1502 | A1502Y | GCt | TAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1502 | A1502X | GCT | TAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1502 | A1502E | gCT | gAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | A.30 | 0.142857 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1502 | A1502R | GCt | CGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1502 | A1502X | GCT | TAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1502 | A1502P | Gct | Cct | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1502 | A1502G | gCt | gGt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1502 | A1502N | GCt | AAt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1502 | A1502G | gCt | gGt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcA | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 1502 | A1502R | GCt | CGt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1502 | A1502N | GCt | AAt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1502 | A1502P | Gct | Cct | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.1.177 | 0.019231 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1502 | A1502del1 | GcT | Rc- | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502Y | GCt | TAt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1502 | A1502P | Gct | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1502 | A1502E | gCT | gAG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1502 | A1502Y | GCt | TAt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1502 | A1502Y | GCt | TAt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1502 | A1502D | gCt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | N.10 | 0.029412 |
ORF1ab/nsp3 | 1502 | A1502del1 | gcT | gc- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1502 | A1502del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1502 | A1502Y | GCt | TAt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1502 | A1502T | Gct | Act | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1502 | A1502V | gCt | gTt | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 1502 | A1502S | Gct | Tct | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1502 | A1502A | gcT | gcC | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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