CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1502

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31502A1502VA2320VnonsyngCtgTt406340620.9997547223-7225
ORF1ab/nsp31502A1502VA2320VnonsyngCTgTG406310.0002461247223-7225
ORF1ab/nsp31502A1502TA2320TnonsynGctAct30230217223-7225
ORF1ab/nsp31502A1502AA2320AsyngcTgcC2351810.7702137223-7225
ORF1ab/nsp31502A1502AA2320AsyngcTgcG235400.1702137223-7225
ORF1ab/nsp31502A1502AA2320AsyngcTgcA235140.05957457223-7225
ORF1ab/nsp31502A1502delA2320deldelGCT---868617223-7225
ORF1ab/nsp31502A1502SA2320SnonsynGctTct39380.9743597223-7225
ORF1ab/nsp31502A1502SA2320SnonsynGcTTcA3910.0256417223-7225
ORF1ab/nsp31502A1502del1A2320del1delgcTgc-24220.9166677223-7225
ORF1ab/nsp31502A1502del1A2320del1delGCt-Tt2410.04166677223-7225
ORF1ab/nsp31502A1502del1A2320del1delGcTRc-2410.04166677223-7225
ORF1ab/nsp31502A1502DA2320DnonsyngCtgAt212117223-7225
ORF1ab/nsp31502A1502NA2320NnonsynGCtAAt101017223-7225
ORF1ab/nsp31502A1502GA2320GnonsyngCtgGt980.8888897223-7225
ORF1ab/nsp31502A1502GA2320GnonsyngCTgGC910.1111117223-7225
ORF1ab/nsp31502A1502PA2320PnonsynGctCct6617223-7225
ORF1ab/nsp31502A1502YA2320YnonsynGCtTAt5517223-7225
ORF1ab/nsp31502A1502EA2320EnonsyngCTgAA210.57223-7225
ORF1ab/nsp31502A1502EA2320EnonsyngCTgAG210.57223-7225
ORF1ab/nsp31502A1502RA2320RnonsynGCtCGt1117223-7225
ORF1ab/nsp31502A1502XA2320XnonsynGCTTAA1117223-7225

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31502A1502VgCtgTt40624063All0.000777
ORF1ab/nsp31502A1502VgCTgTG14063All0
ORF1ab/nsp31502A1502VgCtgTt19601960Q.40.891314
ORF1ab/nsp31502A1502VgCtgTt602602B.1.258.160.98527
ORF1ab/nsp31502A1502VgCtgTt409409B.1.1.70.000366
ORF1ab/nsp31502A1502TGctAct302302All0.000058
ORF1ab/nsp31502A1502AgcTgcC181235All0.000035
ORF1ab/nsp31502A1502AgcTgcG40235All0.000008
ORF1ab/nsp31502A1502AgcTgcA14235All0.000003
ORF1ab/nsp31502A1502VgCtgTt193193AY.40.0003
ORF1ab/nsp31502A1502delGCT---8686All0.000016
ORF1ab/nsp31502A1502VgCtgTt7878B.1.617.20.000294
ORF1ab/nsp31502A1502VgCtgTt7373B.1.110.30.052443
ORF1ab/nsp31502A1502TGctAct5959B.1.1.3281
ORF1ab/nsp31502A1502VgCtgTt5152B.1.10.000925
ORF1ab/nsp31502A1502VgCTgTG152B.1.10.000018
ORF1ab/nsp31502A1502VgCtgTt4747AY.440.000286
ORF1ab/nsp31502A1502AgcTgcC4747B.4.40.886792
ORF1ab/nsp31502A1502TGctAct4444B.1.4060.266667
ORF1ab/nsp31502A1502VgCtgTt4141AY.200.001593
ORF1ab/nsp31502A1502SGctTct3839All0.000007
ORF1ab/nsp31502A1502SGcTTcA139All0
ORF1ab/nsp31502A1502VgCtgTt3535AY.430.000155
ORF1ab/nsp31502A1502VgCtgTt3434B.1.20.000299
ORF1ab/nsp31502A1502TGctAct3434B.1.5260.000799
ORF1ab/nsp31502A1502VgCtgTt3333B.1.1600.001029
ORF1ab/nsp31502A1502VgCtgTt3333Q.80.005442
ORF1ab/nsp31502A1502VgCtgTt3131AY.1030.000192
ORF1ab/nsp31502A1502AgcTgcC1525B.1.1.70.000013
ORF1ab/nsp31502A1502AgcTgcA825B.1.1.70.000007
ORF1ab/nsp31502A1502AgcTgcG225B.1.1.70.000002
ORF1ab/nsp31502A1502TGctAct2525C.350.01935
ORF1ab/nsp31502A1502del1gcTgc-2224All0.000004
ORF1ab/nsp31502A1502del1GcTRc-124All0
ORF1ab/nsp31502A1502del1GCt-Tt124All0
ORF1ab/nsp31502A1502VgCtgTt2424AY.470.000747
ORF1ab/nsp31502A1502TGctAct2424B.1.617.20.00009
ORF1ab/nsp31502A1502VgCtgTt2323B.10.000211
ORF1ab/nsp31502A1502DgCtgAt2121All0.000004
ORF1ab/nsp31502A1502VgCtgTt2020B.1.1770.000263
ORF1ab/nsp31502A1502VgCtgTt1919AY.1020.000504
ORF1ab/nsp31502A1502VgCtgTt1919AY.250.000114
ORF1ab/nsp31502A1502AgcTgcC1019AY.40.000016
ORF1ab/nsp31502A1502AgcTgcG719AY.40.000011
ORF1ab/nsp31502A1502AgcTgcA219AY.40.000003
ORF1ab/nsp31502A1502delGCT---1919B.1.1.70.000017
ORF1ab/nsp31502A1502VgCtgTt1616AY.30.000159
ORF1ab/nsp31502A1502VgCtgTt1616B.1.2340.002111
ORF1ab/nsp31502A1502VgCtgTt1414AY.720.019048
ORF1ab/nsp31502A1502TGctAct1313AY.430.000058
ORF1ab/nsp31502A1502AgcTgcC1212AY.440.000073
ORF1ab/nsp31502A1502AgcTgcC1112B.1.617.20.000041
ORF1ab/nsp31502A1502AgcTgcG112B.1.617.20.000004
ORF1ab/nsp31502A1502VgCtgTt1212P.1.70.003831
ORF1ab/nsp31502A1502TGctAct1111AY.40.000017
ORF1ab/nsp31502A1502VgCtgTt1111B.1.6370.000804
ORF1ab/nsp31502A1502NGCtAAt1010All0.000002
ORF1ab/nsp31502A1502AgcTgcC910B.10.000082
ORF1ab/nsp31502A1502AgcTgcG110B.10.000009
ORF1ab/nsp31502A1502VgCtgTt1010B.1.1.700.003411
ORF1ab/nsp31502A1502GgCtgGt89All0.000002
ORF1ab/nsp31502A1502GgCTgGC19All0
ORF1ab/nsp31502A1502VgCtgTt99AY.1110.001648
ORF1ab/nsp31502A1502VgCtgTt99AY.9.20.000331
ORF1ab/nsp31502A1502TGctAct99B.1.1.70.000008
ORF1ab/nsp31502A1502VgCtgTt99B.1.2580.000599
ORF1ab/nsp31502A1502VgCtgTt99B.1.4820.75
ORF1ab/nsp31502A1502VgCtgTt88AY.420.000322
ORF1ab/nsp31502A1502delGCT---88B.10.000073
ORF1ab/nsp31502A1502AgcTgcG88B.1.1600.00025
ORF1ab/nsp31502A1502TGctAct88B.1.1770.000105
ORF1ab/nsp31502A1502AgcTgcC78B.1.20.000062
ORF1ab/nsp31502A1502AgcTgcG18B.1.20.000009
ORF1ab/nsp31502A1502AgcTgcG77AY.260.000198
ORF1ab/nsp31502A1502VgCtgTt77AY.300.00277
ORF1ab/nsp31502A1502DgCtgAt77AY.40.000011
ORF1ab/nsp31502A1502SGctTct77AY.40.000011
ORF1ab/nsp31502A1502TGctAct77AY.440.000043
ORF1ab/nsp31502A1502VgCtgTt77AY.810.013944
ORF1ab/nsp31502A1502VgCtgTt77B.1.1.3970.015766
ORF1ab/nsp31502A1502VgCtgTt77C.160.007423
ORF1ab/nsp31502A1502PGctCct66All0.000001
ORF1ab/nsp31502A1502VgCtgTt66AY.1170.000507
ORF1ab/nsp31502A1502VgCtgTt66AY.290.000095
ORF1ab/nsp31502A1502AgcTgcC66AY.750.000336
ORF1ab/nsp31502A1502VgCtgTt66AY.980.000474
ORF1ab/nsp31502A1502SGctTct66B.1.1.70.000005
ORF1ab/nsp31502A1502VgCtgTt66B.1.2360.01232
ORF1ab/nsp31502A1502AgcTgcC66B.1.360.000875
ORF1ab/nsp31502A1502NGCtAAt66B.1.4270.000303
ORF1ab/nsp31502A1502VgCtgTt66P.10.000095
ORF1ab/nsp31502A1502YGCtTAt55All0.000001
ORF1ab/nsp31502A1502delGCT---55AY.430.000022
ORF1ab/nsp31502A1502VgCtgTt55AY.50.000103
ORF1ab/nsp31502A1502TGctAct55AY.540.000477
ORF1ab/nsp31502A1502VgCtgTt55B.1.1.2840.000537
ORF1ab/nsp31502A1502TGctAct55B.1.1.5190.000199
ORF1ab/nsp31502A1502VgCtgTt55B.1.2210.000355
ORF1ab/nsp31502A1502VgCtgTt55B.1.2430.000348
ORF1ab/nsp31502A1502VgCtgTt55B.1.3510.000149
ORF1ab/nsp31502A1502VgCtgTt55B.1.5260.000118
ORF1ab/nsp31502A1502AgcTgcC55B.40.011038
ORF1ab/nsp31502A1502delGCT---440.222222
ORF1ab/nsp31502A1502DgCtgAt44AY.1030.000025
ORF1ab/nsp31502A1502TGctAct44AY.1030.000025
ORF1ab/nsp31502A1502VgCtgTt44AY.16.10.00188
ORF1ab/nsp31502A1502AgcTgcG44AY.30.00004
ORF1ab/nsp31502A1502AgcTgcC44AY.430.000018
ORF1ab/nsp31502A1502VgCtgTt44AY.46.60.000289
ORF1ab/nsp31502A1502VgCtgTt44AY.590.002119
ORF1ab/nsp31502A1502TGctAct44AY.9.20.000147
ORF1ab/nsp31502A1502TGctAct44AY.98.10.000194
ORF1ab/nsp31502A1502AgcTgcC44B.1.10.000073
ORF1ab/nsp31502A1502GgCtgGt44B.1.1.70.000004
ORF1ab/nsp31502A1502del1gcTgc-44B.1.1.70.000004
ORF1ab/nsp31502A1502SGctTct44B.1.1600.000125
ORF1ab/nsp31502A1502TGctAct44B.1.20.000035
ORF1ab/nsp31502A1502VgCtgTt44B.1.5250.000453
ORF1ab/nsp31502A1502AgcTgcC44B.1.6210.000354
ORF1ab/nsp31502A1502VgCtgTt44B.1.6210.000354
ORF1ab/nsp31502A1502TGctAct44C.370.000464
ORF1ab/nsp31502A1502VgCtgTt33AY.1190.000106
ORF1ab/nsp31502A1502VgCtgTt33AY.120.10.000963
ORF1ab/nsp31502A1502TGctAct33AY.250.000018
ORF1ab/nsp31502A1502VgCtgTt33AY.390.000074
ORF1ab/nsp31502A1502PGctCct33AY.40.000005
ORF1ab/nsp31502A1502VgCtgTt33AY.4.20.000065
ORF1ab/nsp31502A1502AgcTgcG13AY.4.20.000022
ORF1ab/nsp31502A1502AgcTgcA13AY.4.20.000022
ORF1ab/nsp31502A1502AgcTgcC13AY.4.20.000022
ORF1ab/nsp31502A1502AgcTgcG33AY.520.002443
ORF1ab/nsp31502A1502VgCtgTt33AY.740.000347
ORF1ab/nsp31502A1502del1gcTgc-33B.10.000027
ORF1ab/nsp31502A1502SGctTct33B.10.000027
ORF1ab/nsp31502A1502TGctAct33B.1.10.000054
ORF1ab/nsp31502A1502delGCT---33B.1.1.2180.023077
ORF1ab/nsp31502A1502VgCtgTt33B.1.1.280.000934
ORF1ab/nsp31502A1502delGCT---33B.1.1770.00004
ORF1ab/nsp31502A1502delGCT---33B.1.4110.011111
ORF1ab/nsp31502A1502VgCtgTt33B.1.4290.000071
ORF1ab/nsp31502A1502GgCtgGt23B.1.617.20.000008
ORF1ab/nsp31502A1502GgCTgGC13B.1.617.20.000004
ORF1ab/nsp31502A1502TGctAct220.111111
ORF1ab/nsp31502A1502SGctTct120.055556
ORF1ab/nsp31502A1502SGcTTcA120.055556
ORF1ab/nsp31502A1502EgCTgAA12All0
ORF1ab/nsp31502A1502EgCTgAG12All0
ORF1ab/nsp31502A1502VgCtgTt22AY.1000.000092
ORF1ab/nsp31502A1502AgcTgcG12AY.1030.000006
ORF1ab/nsp31502A1502AgcTgcC12AY.1030.000006
ORF1ab/nsp31502A1502VgCtgTt22AY.1050.001286
ORF1ab/nsp31502A1502TGctAct22AY.1190.000071
ORF1ab/nsp31502A1502delGCT---22AY.250.000012
ORF1ab/nsp31502A1502TGctAct22AY.260.000057
ORF1ab/nsp31502A1502AgcTgcC22AY.270.000129
ORF1ab/nsp31502A1502VgCtgTt22AY.320.001065
ORF1ab/nsp31502A1502del1gcTgc-22AY.40.000003
ORF1ab/nsp31502A1502NGCtAAt22AY.40.000003
ORF1ab/nsp31502A1502delGCT---22AY.40.000003
ORF1ab/nsp31502A1502delGCT---22AY.4.50.000215
ORF1ab/nsp31502A1502VgCtgTt22AY.450.000243
ORF1ab/nsp31502A1502AgcTgcG12AY.50.000021
ORF1ab/nsp31502A1502AgcTgcC12AY.50.000021
ORF1ab/nsp31502A1502VgCtgTt22AY.620.000871
ORF1ab/nsp31502A1502VgCtgTt22AY.7.10.000225
ORF1ab/nsp31502A1502VgCtgTt22AY.75.10.000361
ORF1ab/nsp31502A1502TGctAct22AY.9.10.000167
ORF1ab/nsp31502A1502SGctTct22B.1.10.000036
ORF1ab/nsp31502A1502VgCtgTt22B.1.1.1740.006757
ORF1ab/nsp31502A1502VgCtgTt22B.1.1.510.003436
ORF1ab/nsp31502A1502AgcTgcC22B.1.177.530.004785
ORF1ab/nsp31502A1502delGCT---22B.1.177.620.002384
ORF1ab/nsp31502A1502del1gcTgc-12B.1.20.000009
ORF1ab/nsp31502A1502del1GCt-Tt12B.1.20.000009
ORF1ab/nsp31502A1502VgCtgTt22B.1.428.30.025641
ORF1ab/nsp31502A1502AgcTgcC22B.1.4290.000047
ORF1ab/nsp31502A1502VgCtgTt22B.1.4710.005464
ORF1ab/nsp31502A1502del1gcTgc-22B.1.5960.000174
ORF1ab/nsp31502A1502TGctAct22B.1.5960.000174
ORF1ab/nsp31502A1502delGCT---22B.1.617.20.000008
ORF1ab/nsp31502A1502DgCtgAt22B.1.6210.000177
ORF1ab/nsp31502A1502VgCtgTt22P.70.008734
ORF1ab/nsp31502A1502YGCtTAt110.055556
ORF1ab/nsp31502A1502XGCTTAA110.055556
ORF1ab/nsp31502A1502EgCTgAA110.055556
ORF1ab/nsp31502A1502DgCtgAt110.055556
ORF1ab/nsp31502A1502AgcTgcA110.055556
ORF1ab/nsp31502A1502AgcTgcC11A0.000387
ORF1ab/nsp31502A1502AgcTgcC11A.2.50.000499
ORF1ab/nsp31502A1502VgCtgTt11A.2.5.10.004808
ORF1ab/nsp31502A1502VgCtgTt11A.280.002646
ORF1ab/nsp31502A1502VgCtgTt11A.300.142857
ORF1ab/nsp31502A1502delGCT---11AD.20.000219
ORF1ab/nsp31502A1502RGCtCGt11All0
ORF1ab/nsp31502A1502XGCTTAA11All0
ORF1ab/nsp31502A1502delGCT---11AY.1010.00049
ORF1ab/nsp31502A1502del1gcTgc-11AY.1030.000006
ORF1ab/nsp31502A1502SGctTct11AY.1030.000006
ORF1ab/nsp31502A1502VgCtgTt11AY.1060.000335
ORF1ab/nsp31502A1502delGCT---11AY.1080.001103
ORF1ab/nsp31502A1502AgcTgcC11AY.1080.001103
ORF1ab/nsp31502A1502AgcTgcC11AY.1140.000231
ORF1ab/nsp31502A1502PGctCct11AY.1180.000063
ORF1ab/nsp31502A1502AgcTgcC11AY.1180.000063
ORF1ab/nsp31502A1502AgcTgcG11AY.1190.000035
ORF1ab/nsp31502A1502GgCtgGt11AY.120.000316
ORF1ab/nsp31502A1502VgCtgTt11AY.120.000316
ORF1ab/nsp31502A1502VgCtgTt11AY.1200.000037
ORF1ab/nsp31502A1502DgCtgAt11AY.1200.000037
ORF1ab/nsp31502A1502delGCT---11AY.1200.000037
ORF1ab/nsp31502A1502AgcTgcC11AY.1210.000135
ORF1ab/nsp31502A1502VgCtgTt11AY.1210.000135
ORF1ab/nsp31502A1502VgCtgTt11AY.140.000088
ORF1ab/nsp31502A1502TGctAct11AY.230.00007
ORF1ab/nsp31502A1502VgCtgTt11AY.230.00007
ORF1ab/nsp31502A1502AgcTgcG11AY.250.000006
ORF1ab/nsp31502A1502del1gcTgc-11AY.250.000006
ORF1ab/nsp31502A1502VgCtgTt11AY.260.000028
ORF1ab/nsp31502A1502VgCtgTt11AY.270.000065
ORF1ab/nsp31502A1502delGCT---11AY.30.00001
ORF1ab/nsp31502A1502DgCtgAt11AY.320.000532
ORF1ab/nsp31502A1502AgcTgcC11AY.330.000067
ORF1ab/nsp31502A1502delGCT---11AY.330.000067
ORF1ab/nsp31502A1502VgCtgTt11AY.340.000097
ORF1ab/nsp31502A1502delGCT---11AY.360.000148
ORF1ab/nsp31502A1502VgCtgTt11AY.360.000148
ORF1ab/nsp31502A1502AgcTgcC11AY.360.000148
ORF1ab/nsp31502A1502DgCtgAt11AY.380.000499
ORF1ab/nsp31502A1502AgcTgcC11AY.380.000499
ORF1ab/nsp31502A1502TGctAct11AY.390.000025
ORF1ab/nsp31502A1502TGctAct11AY.39.10.00004
ORF1ab/nsp31502A1502VgCtgTt11AY.39.10.00004
ORF1ab/nsp31502A1502VgCtgTt11AY.4.2.10.000149
ORF1ab/nsp31502A1502delGCT---11AY.4.30.000842
ORF1ab/nsp31502A1502VgCtgTt11AY.4.40.000409
ORF1ab/nsp31502A1502VgCtgTt11AY.4.50.000107
ORF1ab/nsp31502A1502delGCT---11AY.420.00004
ORF1ab/nsp31502A1502TGctAct11AY.420.00004
ORF1ab/nsp31502A1502AgcTgcC11AY.420.00004
ORF1ab/nsp31502A1502DgCtgAt11AY.420.00004
ORF1ab/nsp31502A1502del1gcTgc-11AY.430.000004
ORF1ab/nsp31502A1502delGCT---11AY.440.000006
ORF1ab/nsp31502A1502AgcTgcC11AY.550.000917
ORF1ab/nsp31502A1502TGctAct11AY.60.000041
ORF1ab/nsp31502A1502VgCtgTt11AY.60.000041
ORF1ab/nsp31502A1502NGCtAAt11AY.600.000938
ORF1ab/nsp31502A1502GgCtgGt11AY.610.000105
ORF1ab/nsp31502A1502VgCtgTt11AY.610.000105
ORF1ab/nsp31502A1502AgcTgcA11AY.650.000533
ORF1ab/nsp31502A1502delGCT---11AY.660.00107
ORF1ab/nsp31502A1502delGCT---11AY.670.000464
ORF1ab/nsp31502A1502VgCtgTt11AY.70.000196
ORF1ab/nsp31502A1502AgcTgcC11AY.70.000196
ORF1ab/nsp31502A1502TGctAct11AY.75.10.00018
ORF1ab/nsp31502A1502delGCT---11AY.760.004831
ORF1ab/nsp31502A1502VgCtgTt11AY.770.001127
ORF1ab/nsp31502A1502SGctTct11AY.830.001724
ORF1ab/nsp31502A1502RGCtCGt11AY.840.000437
ORF1ab/nsp31502A1502VgCtgTt11AY.9.10.000084
ORF1ab/nsp31502A1502NGCtAAt11AY.9.20.000037
ORF1ab/nsp31502A1502AgcTgcC11AY.9.20.000037
ORF1ab/nsp31502A1502delGCT---11AY.9.20.000037
ORF1ab/nsp31502A1502VgCtgTt11AY.940.000443
ORF1ab/nsp31502A1502del1gcTgc-11AY.960.002075
ORF1ab/nsp31502A1502delGCT---11AY.990.001049
ORF1ab/nsp31502A1502delGCT---11AY.99.10.001553
ORF1ab/nsp31502A1502SGctTct11AY.99.20.000092
ORF1ab/nsp31502A1502TGctAct11B0.000128
ORF1ab/nsp31502A1502VgCtgTt11B0.000128
ORF1ab/nsp31502A1502delGCT---11B0.000128
ORF1ab/nsp31502A1502TGctAct11B.10.000009
ORF1ab/nsp31502A1502delGCT---11B.1.10.000018
ORF1ab/nsp31502A1502del1gcTgc-11B.1.10.000018
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.1410.002012
ORF1ab/nsp31502A1502PGctCct11B.1.1.1570.000913
ORF1ab/nsp31502A1502AgcTgcC11B.1.1.1770.019231
ORF1ab/nsp31502A1502TGctAct11B.1.1.2140.000055
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.2140.000055
ORF1ab/nsp31502A1502TGctAct11B.1.1.2220.000204
ORF1ab/nsp31502A1502SGctTct11B.1.1.2410.00207
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.2660.012195
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.2890.002083
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.3060.000438
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.3120.001912
ORF1ab/nsp31502A1502SGctTct11B.1.1.3550.015385
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.3690.000446
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.370.000193
ORF1ab/nsp31502A1502delGCT---11B.1.1.370.000193
ORF1ab/nsp31502A1502TGctAct11B.1.1.3890.006061
ORF1ab/nsp31502A1502del1GcTRc-11B.1.1.4110.014706
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.4320.001266
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp31502A1502delGCT---11B.1.1.460.004367
ORF1ab/nsp31502A1502delGCT---11B.1.1.4640.001473
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.4860.001577
ORF1ab/nsp31502A1502VgCtgTt11B.1.1.5190.00004
ORF1ab/nsp31502A1502AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp31502A1502YGCtTAt11B.1.1.5190.00004
ORF1ab/nsp31502A1502delGCT---11B.1.1.5250.005464
ORF1ab/nsp31502A1502PGctCct11B.1.1.70.000001
ORF1ab/nsp31502A1502AgcTgcC11B.1.1.700.000341
ORF1ab/nsp31502A1502AgcTgcC11B.1.160.150.00495
ORF1ab/nsp31502A1502VgCtgTt11B.1.160.160.000929
ORF1ab/nsp31502A1502AgcTgcC11B.1.1770.000013
ORF1ab/nsp31502A1502SGctTct11B.1.1770.000013
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.430.001477
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.450.000381
ORF1ab/nsp31502A1502TGctAct11B.1.177.500.004695
ORF1ab/nsp31502A1502AgcTgcC11B.1.177.600.000218
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.70.000165
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.730.000566
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.770.000726
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.80.000752
ORF1ab/nsp31502A1502VgCtgTt11B.1.177.810.000189
ORF1ab/nsp31502A1502AgcTgcC11B.1.177.90.001332
ORF1ab/nsp31502A1502SGctTct11B.1.20.000009
ORF1ab/nsp31502A1502DgCtgAt11B.1.20.000009
ORF1ab/nsp31502A1502EgCTgAG11B.1.20.000009
ORF1ab/nsp31502A1502TGctAct11B.1.2210.000071
ORF1ab/nsp31502A1502del1gcTgc-11B.1.2210.000071
ORF1ab/nsp31502A1502VgCtgTt11B.1.2320.000537
ORF1ab/nsp31502A1502AgcTgcC11B.1.2320.000537
ORF1ab/nsp31502A1502SGctTct11B.1.2340.000132
ORF1ab/nsp31502A1502AgcTgcC11B.1.2340.000132
ORF1ab/nsp31502A1502VgCtgTt11B.1.2400.000216
ORF1ab/nsp31502A1502TGctAct11B.1.2430.00007
ORF1ab/nsp31502A1502del1gcTgc-11B.1.2430.00007
ORF1ab/nsp31502A1502AgcTgcC11B.1.2580.000067
ORF1ab/nsp31502A1502VgCtgTt11B.1.258.110.000396
ORF1ab/nsp31502A1502delGCT---11B.1.2650.001271
ORF1ab/nsp31502A1502del1gcTgc-11B.1.3290.000608
ORF1ab/nsp31502A1502AgcTgcC11B.1.3490.000715
ORF1ab/nsp31502A1502TGctAct11B.1.3510.00003
ORF1ab/nsp31502A1502SGctTct11B.1.3510.00003
ORF1ab/nsp31502A1502VgCtgTt11B.1.351.20.000303
ORF1ab/nsp31502A1502VgCtgTt11B.1.360.000146
ORF1ab/nsp31502A1502VgCtgTt11B.1.36.180.00042
ORF1ab/nsp31502A1502TGctAct11B.1.36.350.002604
ORF1ab/nsp31502A1502AgcTgcC11B.1.36.80.001
ORF1ab/nsp31502A1502AgcTgcA11B.1.3670.000792
ORF1ab/nsp31502A1502delGCT---11B.1.416.10.001563
ORF1ab/nsp31502A1502YGCtTAt11B.1.4270.00005
ORF1ab/nsp31502A1502TGctAct11B.1.4270.00005
ORF1ab/nsp31502A1502SGctTct11B.1.4290.000024
ORF1ab/nsp31502A1502TGctAct11B.1.4290.000024
ORF1ab/nsp31502A1502YGCtTAt11B.1.4290.000024
ORF1ab/nsp31502A1502delGCT---11B.1.4530.003236
ORF1ab/nsp31502A1502VgCtgTt11B.1.4560.003268
ORF1ab/nsp31502A1502SGctTct11B.1.4560.003268
ORF1ab/nsp31502A1502del1gcTgc-11B.1.466.20.000391
ORF1ab/nsp31502A1502AgcTgcC11B.1.4970.000315
ORF1ab/nsp31502A1502VgCtgTt11B.1.4990.00105
ORF1ab/nsp31502A1502DgCtgAt11B.1.5250.000113
ORF1ab/nsp31502A1502delGCT---11B.1.5260.000024
ORF1ab/nsp31502A1502delGCT---11B.1.5330.009615
ORF1ab/nsp31502A1502AgcTgcC11B.1.5510.00129
ORF1ab/nsp31502A1502VgCtgTt11B.1.564.10.001577
ORF1ab/nsp31502A1502delGCT---11B.1.5770.000687
ORF1ab/nsp31502A1502VgCtgTt11B.1.5960.000087
ORF1ab/nsp31502A1502VgCtgTt11B.1.617.10.000129
ORF1ab/nsp31502A1502delGCT---11B.1.617.10.000129
ORF1ab/nsp31502A1502DgCtgAt11B.1.617.20.000004
ORF1ab/nsp31502A1502SGctTct11B.1.617.20.000004
ORF1ab/nsp31502A1502SGctTct11B.1.619.10.000641
ORF1ab/nsp31502A1502SGctTct11B.1.6210.000089
ORF1ab/nsp31502A1502delGCT---11B.1.6210.000089
ORF1ab/nsp31502A1502VgCtgTt11B.1.6280.000352
ORF1ab/nsp31502A1502TGctAct11B.1.6310.003367
ORF1ab/nsp31502A1502TGctAct11B.400.000364
ORF1ab/nsp31502A1502VgCtgTt11C.350.000774
ORF1ab/nsp31502A1502TGctAct11D.20.000075
ORF1ab/nsp31502A1502AgcTgcC11D.20.000075
ORF1ab/nsp31502A1502AgcTgcC11N.10.016949
ORF1ab/nsp31502A1502VgCtgTt11N.100.029412
ORF1ab/nsp31502A1502del1gcTgc-11P.10.000016
ORF1ab/nsp31502A1502AgcTgcC11P.10.000016
ORF1ab/nsp31502A1502delGCT---11P.1.150.000232
ORF1ab/nsp31502A1502VgCtgTt11P.1.150.000232
ORF1ab/nsp31502A1502VgCtgTt11Q.10.000126
ORF1ab/nsp31502A1502YGCtTAt11Q.30.000145
ORF1ab/nsp31502A1502AgcTgcC11Q.30.000145
ORF1ab/nsp31502A1502TGctAct11Q.30.000145
ORF1ab/nsp31502A1502VgCtgTt11Q.70.001111
ORF1ab/nsp31502A1502SGctTct11Q.70.001111
ORF1ab/nsp31502A1502AgcTgcG11Q.80.000165
ORF1ab/nsp31502A1502AgcTgcC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.