CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1492

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1492	T1492T	T2310T	syn	acC	acT	2614	2538	0.970926	7193-7195
ORF1ab/nsp3	1492	T1492T	T2310T	syn	acC	acG	2614	49	0.0187452	7193-7195
ORF1ab/nsp3	1492	T1492T	T2310T	syn	acC	acA	2614	27	0.010329	7193-7195
ORF1ab/nsp3	1492	T1492I	T2310I	nonsyn	aCc	aTc	1289	1289	1	7193-7195
ORF1ab/nsp3	1492	T1492N	T2310N	nonsyn	aCc	aAc	100	100	1	7193-7195
ORF1ab/nsp3	1492	T1492del	T2310del	del	ACC	---	87	87	1	7193-7195
ORF1ab/nsp3	1492	T1492A	T2310A	nonsyn	Acc	Gcc	28	27	0.964286	7193-7195
ORF1ab/nsp3	1492	T1492A	T2310A	nonsyn	AcC	GcA	28	1	0.0357143	7193-7195
ORF1ab/nsp3	1492	T1492S	T2310S	nonsyn	Acc	Tcc	10	9	0.9	7193-7195
ORF1ab/nsp3	1492	T1492S	T2310S	nonsyn	AcC	TcT	10	1	0.1	7193-7195
ORF1ab/nsp3	1492	T1492del1	T2310del1	del	aCc	a-c	7	6	0.857143	7193-7195
ORF1ab/nsp3	1492	T1492del1	T2310del1	del	aCC	a-T	7	1	0.142857	7193-7195
ORF1ab/nsp3	1492	T1492P	T2310P	nonsyn	Acc	Ccc	3	2	0.666667	7193-7195
ORF1ab/nsp3	1492	T1492P	T2310P	nonsyn	AcC	CcA	3	1	0.333333	7193-7195
ORF1ab/nsp3	1492	T1492V	T2310V	nonsyn	ACC	GTA	1	1	1	7193-7195
ORF1ab/nsp3	1492	T1492K	T2310K	nonsyn	aCC	aAG	1	1	1	7193-7195

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1492	T1492T	acC	acT	2538	2614	All	0.000485
ORF1ab/nsp3	1492	T1492T	acC	acG	49	2614	All	0.000009
ORF1ab/nsp3	1492	T1492T	acC	acA	27	2614	All	0.000005
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1289	1289	All	0.000247
ORF1ab/nsp3	1492	T1492T	acC	acT	834	834	B.1.177.62	0.994041
ORF1ab/nsp3	1492	T1492I	aCc	aTc	511	511	AY.111	0.09359
ORF1ab/nsp3	1492	T1492I	aCc	aTc	432	432	AY.29	0.006814
ORF1ab/nsp3	1492	T1492T	acC	acT	345	346	AY.43	0.001529
ORF1ab/nsp3	1492	T1492T	acC	acA	1	346	AY.43	0.000004
ORF1ab/nsp3	1492	T1492T	acC	acT	177	179	AY.4	0.000275
ORF1ab/nsp3	1492	T1492T	acC	acA	2	179	AY.4	0.000003
ORF1ab/nsp3	1492	T1492T	acC	acT	158	158	B.1.160	0.004928
ORF1ab/nsp3	1492	T1492T	acC	acT	136	141	B.1.1.7	0.000122
ORF1ab/nsp3	1492	T1492T	acC	acA	4	141	B.1.1.7	0.000004
ORF1ab/nsp3	1492	T1492T	acC	acG	1	141	B.1.1.7	0.000001
ORF1ab/nsp3	1492	T1492N	aCc	aAc	100	100	All	0.000019
ORF1ab/nsp3	1492	T1492T	acC	acT	99	100	AY.42	0.003983
ORF1ab/nsp3	1492	T1492T	acC	acA	1	100	AY.42	0.00004
ORF1ab/nsp3	1492	T1492T	acC	acT	95	95	AY.4.2	0.00206
ORF1ab/nsp3	1492	T1492T	acC	acT	93	93	AY.103	0.000577
ORF1ab/nsp3	1492	T1492del	ACC	---	87	87	All	0.000017
ORF1ab/nsp3	1492	T1492N	aCc	aAc	83	83	B.1.1.7	0.000074
ORF1ab/nsp3	1492	T1492T	acC	acT	70	70	C.37	0.008124
ORF1ab/nsp3	1492	T1492I	aCc	aTc	59	59	AY.43	0.000261
ORF1ab/nsp3	1492	T1492I	aCc	aTc	58	58	B.1.617.2	0.000218
ORF1ab/nsp3	1492	T1492T	acC	acT	53	57	AY.44	0.000323
ORF1ab/nsp3	1492	T1492T	acC	acA	4	57	AY.44	0.000024
ORF1ab/nsp3	1492	T1492I	aCc	aTc	56	56	AY.4	0.000087
ORF1ab/nsp3	1492	T1492T	acC	acT	43	44	P.1	0.000677
ORF1ab/nsp3	1492	T1492T	acC	acA	1	44	P.1	0.000016
ORF1ab/nsp3	1492	T1492T	acC	acG	40	40	AY.39.2	0.061633
ORF1ab/nsp3	1492	T1492T	acC	acT	39	39	AY.4.2.1	0.00581
ORF1ab/nsp3	1492	T1492T	acC	acT	32	32	AY.29	0.000505
ORF1ab/nsp3	1492	T1492T	acC	acT	32	32	B.1.2	0.000282
ORF1ab/nsp3	1492	T1492I	aCc	aTc	30	30	AY.25	0.00018
ORF1ab/nsp3	1492	T1492T	acC	acT	29	29	AY.26	0.000821
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	27	28	All	0.000005
ORF1ab/nsp3	1492	T1492A	AcC	GcA	1	28	All	0
ORF1ab/nsp3	1492	T1492T	acC	acT	16	23	B.1	0.000147
ORF1ab/nsp3	1492	T1492T	acC	acA	4	23	B.1	0.000037
ORF1ab/nsp3	1492	T1492T	acC	acG	3	23	B.1	0.000027
ORF1ab/nsp3	1492	T1492T	acC	acT	22	22	AY.3	0.000219
ORF1ab/nsp3	1492	T1492T	acC	acT	22	22	B.1.1	0.000399
ORF1ab/nsp3	1492	T1492T	acC	acT	21	22	B.1.617.2	0.000079
ORF1ab/nsp3	1492	T1492T	acC	acG	1	22	B.1.617.2	0.000004
ORF1ab/nsp3	1492	T1492del	ACC	---	20	20	B.1.1.7	0.000018
ORF1ab/nsp3	1492	T1492T	acC	acT	20	20	P.1.14	0.000956
ORF1ab/nsp3	1492	T1492I	aCc	aTc	17	17	B.1.1.7	0.000015
ORF1ab/nsp3	1492	T1492T	acC	acT	13	13	B.1.234	0.001715
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	12	12	AY.43	0.000053
ORF1ab/nsp3	1492	T1492T	acC	acT	11	11	AY.120	0.000409
ORF1ab/nsp3	1492	T1492T	acC	acT	11	11	AY.25	0.000066
ORF1ab/nsp3	1492	T1492S	Acc	Tcc	9	10	All	0.000002
ORF1ab/nsp3	1492	T1492S	AcC	TcT	1	10	All	0
ORF1ab/nsp3	1492	T1492T	acC	acT	9	10	B.1.351	0.000268
ORF1ab/nsp3	1492	T1492T	acC	acA	1	10	B.1.351	0.00003
ORF1ab/nsp3	1492	T1492I	aCc	aTc	10	10	D.2	0.00075
ORF1ab/nsp3	1492	T1492T	acC	acT	9	9	B.1.621	0.000797
ORF1ab/nsp3	1492	T1492I	aCc	aTc	8	8	AY.3	0.00008
ORF1ab/nsp3	1492	T1492T	acC	acT	5	8	AY.39	0.000124
ORF1ab/nsp3	1492	T1492T	acC	acG	3	8	AY.39	0.000074
ORF1ab/nsp3	1492	T1492I	aCc	aTc	8	8	AY.44	0.000049
ORF1ab/nsp3	1492	T1492I	aCc	aTc	8	8	AY.87	0.006661
ORF1ab/nsp3	1492	T1492T	acC	acT	8	8	B.1.1.25	0.004548
ORF1ab/nsp3	1492	T1492I	aCc	aTc	8	8	B.1.258.14	0.007843
ORF1ab/nsp3	1492	T1492del1	aCc	a-c	6	7	All	0.000001
ORF1ab/nsp3	1492	T1492del1	aCC	a-T	1	7	All	0
ORF1ab/nsp3	1492	T1492I	aCc	aTc	7	7	AY.103	0.000043
ORF1ab/nsp3	1492	T1492T	acC	acT	7	7	AY.75	0.000392
ORF1ab/nsp3	1492	T1492del	ACC	---	7	7	B.1	0.000064
ORF1ab/nsp3	1492	T1492T	acC	acT	7	7	B.1.575	0.002124
ORF1ab/nsp3	1492	T1492I	aCc	aTc	6	6	AY.121	0.000812
ORF1ab/nsp3	1492	T1492I	aCc	aTc	6	6	B.1.2	0.000053
ORF1ab/nsp3	1492	T1492T	acC	acT	6	6	B.1.429	0.000141
ORF1ab/nsp3	1492	T1492I	aCc	aTc	5	5	AY.102	0.000133
ORF1ab/nsp3	1492	T1492T	acC	acT	5	5	AY.116	0.001434
ORF1ab/nsp3	1492	T1492T	acC	acT	5	5	AY.20	0.000194
ORF1ab/nsp3	1492	T1492I	aCc	aTc	5	5	AY.46.1	0.005133
ORF1ab/nsp3	1492	T1492I	aCc	aTc	5	5	B.1.177	0.000066
ORF1ab/nsp3	1492	T1492N	aCc	aAc	4	4	AY.103	0.000025
ORF1ab/nsp3	1492	T1492N	aCc	aAc	4	4	AY.25	0.000024
ORF1ab/nsp3	1492	T1492T	acC	acT	4	4	AY.36	0.000593
ORF1ab/nsp3	1492	T1492del	ACC	---	4	4	AY.43	0.000018
ORF1ab/nsp3	1492	T1492T	acC	acT	4	4	B.1.1.44	0.009639
ORF1ab/nsp3	1492	T1492T	acC	acA	2	4	B.1.1.519	0.000079
ORF1ab/nsp3	1492	T1492T	acC	acT	2	4	B.1.1.519	0.000079
ORF1ab/nsp3	1492	T1492T	acC	acT	3	4	B.1.177	0.00004
ORF1ab/nsp3	1492	T1492T	acC	acG	1	4	B.1.177	0.000013
ORF1ab/nsp3	1492	T1492T	acC	acT	4	4	B.1.526	0.000094
ORF1ab/nsp3	1492	T1492P	Acc	Ccc	2	3	All	0
ORF1ab/nsp3	1492	T1492P	AcC	CcA	1	3	All	0
ORF1ab/nsp3	1492	T1492T	acC	acT	3	3	AY.100	0.000138
ORF1ab/nsp3	1492	T1492T	acC	acT	3	3	AY.102	0.00008
ORF1ab/nsp3	1492	T1492I	aCc	aTc	3	3	AY.23	0.000209
ORF1ab/nsp3	1492	T1492I	aCc	aTc	3	3	AY.29.1	0.000662
ORF1ab/nsp3	1492	T1492I	aCc	aTc	3	3	AY.39	0.000074
ORF1ab/nsp3	1492	T1492I	aCc	aTc	3	3	AY.39.1	0.000119
ORF1ab/nsp3	1492	T1492del	ACC	---	3	3	AY.4	0.000005
ORF1ab/nsp3	1492	T1492del	ACC	---	3	3	B.1.1.218	0.023077
ORF1ab/nsp3	1492	T1492del	ACC	---	3	3	B.1.177	0.00004
ORF1ab/nsp3	1492	T1492del	ACC	---	3	3	B.1.411	0.011111
ORF1ab/nsp3	1492	T1492T	acC	acT	3	3	B.1.582	0.001472
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	3	3	B.1.617.2	0.000011
ORF1ab/nsp3	1492	T1492del	ACC	---	2	2		0.111111
ORF1ab/nsp3	1492	T1492I	aCc	aTc	2	2	AY.105	0.001286
ORF1ab/nsp3	1492	T1492I	aCc	aTc	2	2	AY.113	0.000285
ORF1ab/nsp3	1492	T1492I	aCc	aTc	2	2	AY.120	0.000074
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	AY.23	0.000139
ORF1ab/nsp3	1492	T1492del	ACC	---	2	2	AY.25	0.000012
ORF1ab/nsp3	1492	T1492T	acC	acT	1	2	AY.34	0.000097
ORF1ab/nsp3	1492	T1492T	acC	acA	1	2	AY.34	0.000097
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	AY.35	0.000466
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	AY.45	0.000243
ORF1ab/nsp3	1492	T1492I	aCc	aTc	2	2	AY.46	0.000208
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	AY.5	0.000041
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	AY.6	0.000082
ORF1ab/nsp3	1492	T1492I	aCc	aTc	2	2	AY.84	0.000875
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	2	2	AY.92	0.000575
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	AY.98.1	0.000097
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B	0.000256
ORF1ab/nsp3	1492	T1492I	aCc	aTc	2	2	B.1	0.000018
ORF1ab/nsp3	1492	T1492del1	aCc	a-c	2	2	B.1	0.000018
ORF1ab/nsp3	1492	T1492del	ACC	---	2	2	B.1.1	0.000036
ORF1ab/nsp3	1492	T1492I	aCc	aTc	2	2	B.1.1	0.000036
ORF1ab/nsp3	1492	T1492del1	aCC	a-T	1	2	B.1.1	0.000018
ORF1ab/nsp3	1492	T1492del1	aCc	a-c	1	2	B.1.1	0.000018
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.1.222	0.000408
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.1.279	0.002242
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.1.291	0.001485
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.1.306	0.000877
ORF1ab/nsp3	1492	T1492S	Acc	Tcc	2	2	B.1.1.7	0.000002
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.126	0.002551
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.128	0.001271
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	2	2	B.1.160	0.000062
ORF1ab/nsp3	1492	T1492del	ACC	---	2	2	B.1.177.62	0.002384
ORF1ab/nsp3	1492	T1492I	aCc	aTc	2	2	B.1.243	0.000139
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.243	0.000139
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.292	0.117647
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.369	0.00057
ORF1ab/nsp3	1492	T1492T	acC	acA	1	2	B.1.391	0.001127
ORF1ab/nsp3	1492	T1492T	acC	acT	1	2	B.1.391	0.001127
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.439	0.011834
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	B.1.596	0.000174
ORF1ab/nsp3	1492	T1492N	aCc	aAc	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	1492	T1492del	ACC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	D.2	0.00015
ORF1ab/nsp3	1492	T1492I	aCc	aTc	2	2	P.1	0.000032
ORF1ab/nsp3	1492	T1492T	acC	acT	2	2	Q.2	0.001227
ORF1ab/nsp3	1492	T1492T	acC	acA	1	2	R.1	0.00009
ORF1ab/nsp3	1492	T1492T	acC	acT	1	2	R.1	0.00009
ORF1ab/nsp3	1492	T1492N	aCc	aAc	1	1	A.1	0.000282
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	A.2.3	0.004739
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	A.2.5.2	0.001572
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AD.2	0.000219
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AD.2	0.000219
ORF1ab/nsp3	1492	T1492K	aCC	aAG	1	1	All	0
ORF1ab/nsp3	1492	T1492V	ACC	GTA	1	1	All	0
ORF1ab/nsp3	1492	T1492S	Acc	Tcc	1	1	AU.1	0.001266
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.1	0.000396
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.101	0.00049
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.103	0.000006
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.108	0.001103
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.114	0.000231
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.118	0.000063
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.119	0.000035
ORF1ab/nsp3	1492	T1492T	acC	acA	1	1	AY.119	0.000035
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.120	0.000037
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.13	0.000161
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.20	0.000039
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.24	0.000431
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.26	0.000028
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.29.1	0.000221
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.3	0.00001
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.3.1	0.000085
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.33	0.000067
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.33	0.000067
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	1	1	AY.34	0.000097
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.34.1	0.00051
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.36	0.000148
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1492	T1492P	Acc	Ccc	1	1	AY.4	0.000002
ORF1ab/nsp3	1492	T1492S	Acc	Tcc	1	1	AY.4	0.000002
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.4.3	0.000842
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1492	T1492S	Acc	Tcc	1	1	AY.43	0.000004
ORF1ab/nsp3	1492	T1492P	Acc	Ccc	1	1	AY.44	0.000006
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.44	0.000006
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	1	1	AY.44	0.000006
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.46	0.000104
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.46.2	0.000635
ORF1ab/nsp3	1492	T1492S	Acc	Tcc	1	1	AY.46.4	0.000165
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.47	0.000031
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.5	0.000021
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.66	0.00107
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.67	0.000464
ORF1ab/nsp3	1492	T1492S	AcC	TcT	1	1	AY.69	0.000187
ORF1ab/nsp3	1492	T1492N	aCc	aAc	1	1	AY.69	0.000187
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.76	0.004831
ORF1ab/nsp3	1492	T1492K	aCC	aAG	1	1	AY.84	0.000437
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.9	0.000068
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.9	0.000068
ORF1ab/nsp3	1492	T1492T	acC	acA	1	1	AY.9.1	0.000084
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.9.1	0.000084
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.92	0.000287
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	AY.98.1	0.000048
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	AY.99	0.001049
ORF1ab/nsp3	1492	T1492S	Acc	Tcc	1	1	B	0.000128
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	B	0.000128
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	1	1	B.1	0.000009
ORF1ab/nsp3	1492	T1492N	aCc	aAc	1	1	B.1	0.000009
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	B.1.1.121	0.002427
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.1.135	0.004695
ORF1ab/nsp3	1492	T1492S	Acc	Tcc	1	1	B.1.1.241	0.00207
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	B.1.1.317	0.000412
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.1.317	0.000412
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.1.37	0.000193
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.1.39	0.00051
ORF1ab/nsp3	1492	T1492N	aCc	aAc	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.1.420	0.001006
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.1.459	0.015385
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.1.464	0.001473
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.1.525	0.005464
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1492	T1492S	Acc	Tcc	1	1	B.1.160.22	0.006757
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.177.20	0.001517
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.177.5	0.001242
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.177.75	0.001041
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.221	0.000071
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	B.1.221	0.000071
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	B.1.234	0.000132
ORF1ab/nsp3	1492	T1492N	aCc	aAc	1	1	B.1.243	0.00007
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.258	0.000067
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.265	0.001271
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.349	0.000715
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	1	1	B.1.351	0.00003
ORF1ab/nsp3	1492	T1492T	acC	acA	1	1	B.1.351.2	0.000303
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.36.35	0.002604
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.389	0.001002
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	B.1.429	0.000024
ORF1ab/nsp3	1492	T1492del1	aCc	a-c	1	1	B.1.429	0.000024
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.453	0.003236
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.456	0.003268
ORF1ab/nsp3	1492	T1492N	aCc	aAc	1	1	B.1.525	0.000113
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.525	0.000113
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.526	0.000024
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.533	0.009615
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.561	0.000397
ORF1ab/nsp3	1492	T1492del1	aCc	a-c	1	1	B.1.564	0.000426
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.577	0.000687
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.577	0.000687
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.596	0.000087
ORF1ab/nsp3	1492	T1492del1	aCc	a-c	1	1	B.1.596	0.000087
ORF1ab/nsp3	1492	T1492A	AcC	GcA	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1492	T1492V	ACC	GTA	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.637	0.000073
ORF1ab/nsp3	1492	T1492N	aCc	aAc	1	1	B.1.637	0.000073
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	B.1.637	0.000073
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	B.1.8	0.001972
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	1	1	B.19	0.037037
ORF1ab/nsp3	1492	T1492T	acC	acA	1	1	B.6.6	0.000889
ORF1ab/nsp3	1492	T1492P	AcC	CcA	1	1	C.35	0.000774
ORF1ab/nsp3	1492	T1492I	aCc	aTc	1	1	C.35	0.000774
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	C.35	0.000774
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	N.3	0.005814
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	1	1	P.1	0.000016
ORF1ab/nsp3	1492	T1492A	Acc	Gcc	1	1	P.1.1	0.000318
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	P.1.1	0.000318
ORF1ab/nsp3	1492	T1492del	ACC	---	1	1	P.1.15	0.000232
ORF1ab/nsp3	1492	T1492T	acC	acT	1	1	P.1.7	0.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.