CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1492

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31492T1492TT2310TsynacCacT261425380.9709267193-7195
ORF1ab/nsp31492T1492TT2310TsynacCacG2614490.01874527193-7195
ORF1ab/nsp31492T1492TT2310TsynacCacA2614270.0103297193-7195
ORF1ab/nsp31492T1492IT2310InonsynaCcaTc1289128917193-7195
ORF1ab/nsp31492T1492NT2310NnonsynaCcaAc10010017193-7195
ORF1ab/nsp31492T1492delT2310deldelACC---878717193-7195
ORF1ab/nsp31492T1492AT2310AnonsynAccGcc28270.9642867193-7195
ORF1ab/nsp31492T1492AT2310AnonsynAcCGcA2810.03571437193-7195
ORF1ab/nsp31492T1492ST2310SnonsynAccTcc1090.97193-7195
ORF1ab/nsp31492T1492ST2310SnonsynAcCTcT1010.17193-7195
ORF1ab/nsp31492T1492del1T2310del1delaCca-c760.8571437193-7195
ORF1ab/nsp31492T1492del1T2310del1delaCCa-T710.1428577193-7195
ORF1ab/nsp31492T1492PT2310PnonsynAccCcc320.6666677193-7195
ORF1ab/nsp31492T1492PT2310PnonsynAcCCcA310.3333337193-7195
ORF1ab/nsp31492T1492VT2310VnonsynACCGTA1117193-7195
ORF1ab/nsp31492T1492KT2310KnonsynaCCaAG1117193-7195

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31492T1492TacCacT25382614All0.000485
ORF1ab/nsp31492T1492TacCacG492614All0.000009
ORF1ab/nsp31492T1492TacCacA272614All0.000005
ORF1ab/nsp31492T1492IaCcaTc12891289All0.000247
ORF1ab/nsp31492T1492TacCacT834834B.1.177.620.994041
ORF1ab/nsp31492T1492IaCcaTc511511AY.1110.09359
ORF1ab/nsp31492T1492IaCcaTc432432AY.290.006814
ORF1ab/nsp31492T1492TacCacT345346AY.430.001529
ORF1ab/nsp31492T1492TacCacA1346AY.430.000004
ORF1ab/nsp31492T1492TacCacT177179AY.40.000275
ORF1ab/nsp31492T1492TacCacA2179AY.40.000003
ORF1ab/nsp31492T1492TacCacT158158B.1.1600.004928
ORF1ab/nsp31492T1492TacCacT136141B.1.1.70.000122
ORF1ab/nsp31492T1492TacCacA4141B.1.1.70.000004
ORF1ab/nsp31492T1492TacCacG1141B.1.1.70.000001
ORF1ab/nsp31492T1492NaCcaAc100100All0.000019
ORF1ab/nsp31492T1492TacCacT99100AY.420.003983
ORF1ab/nsp31492T1492TacCacA1100AY.420.00004
ORF1ab/nsp31492T1492TacCacT9595AY.4.20.00206
ORF1ab/nsp31492T1492TacCacT9393AY.1030.000577
ORF1ab/nsp31492T1492delACC---8787All0.000017
ORF1ab/nsp31492T1492NaCcaAc8383B.1.1.70.000074
ORF1ab/nsp31492T1492TacCacT7070C.370.008124
ORF1ab/nsp31492T1492IaCcaTc5959AY.430.000261
ORF1ab/nsp31492T1492IaCcaTc5858B.1.617.20.000218
ORF1ab/nsp31492T1492TacCacT5357AY.440.000323
ORF1ab/nsp31492T1492TacCacA457AY.440.000024
ORF1ab/nsp31492T1492IaCcaTc5656AY.40.000087
ORF1ab/nsp31492T1492TacCacT4344P.10.000677
ORF1ab/nsp31492T1492TacCacA144P.10.000016
ORF1ab/nsp31492T1492TacCacG4040AY.39.20.061633
ORF1ab/nsp31492T1492TacCacT3939AY.4.2.10.00581
ORF1ab/nsp31492T1492TacCacT3232AY.290.000505
ORF1ab/nsp31492T1492TacCacT3232B.1.20.000282
ORF1ab/nsp31492T1492IaCcaTc3030AY.250.00018
ORF1ab/nsp31492T1492TacCacT2929AY.260.000821
ORF1ab/nsp31492T1492AAccGcc2728All0.000005
ORF1ab/nsp31492T1492AAcCGcA128All0
ORF1ab/nsp31492T1492TacCacT1623B.10.000147
ORF1ab/nsp31492T1492TacCacA423B.10.000037
ORF1ab/nsp31492T1492TacCacG323B.10.000027
ORF1ab/nsp31492T1492TacCacT2222AY.30.000219
ORF1ab/nsp31492T1492TacCacT2222B.1.10.000399
ORF1ab/nsp31492T1492TacCacT2122B.1.617.20.000079
ORF1ab/nsp31492T1492TacCacG122B.1.617.20.000004
ORF1ab/nsp31492T1492delACC---2020B.1.1.70.000018
ORF1ab/nsp31492T1492TacCacT2020P.1.140.000956
ORF1ab/nsp31492T1492IaCcaTc1717B.1.1.70.000015
ORF1ab/nsp31492T1492TacCacT1313B.1.2340.001715
ORF1ab/nsp31492T1492AAccGcc1212AY.430.000053
ORF1ab/nsp31492T1492TacCacT1111AY.1200.000409
ORF1ab/nsp31492T1492TacCacT1111AY.250.000066
ORF1ab/nsp31492T1492SAccTcc910All0.000002
ORF1ab/nsp31492T1492SAcCTcT110All0
ORF1ab/nsp31492T1492TacCacT910B.1.3510.000268
ORF1ab/nsp31492T1492TacCacA110B.1.3510.00003
ORF1ab/nsp31492T1492IaCcaTc1010D.20.00075
ORF1ab/nsp31492T1492TacCacT99B.1.6210.000797
ORF1ab/nsp31492T1492IaCcaTc88AY.30.00008
ORF1ab/nsp31492T1492TacCacT58AY.390.000124
ORF1ab/nsp31492T1492TacCacG38AY.390.000074
ORF1ab/nsp31492T1492IaCcaTc88AY.440.000049
ORF1ab/nsp31492T1492IaCcaTc88AY.870.006661
ORF1ab/nsp31492T1492TacCacT88B.1.1.250.004548
ORF1ab/nsp31492T1492IaCcaTc88B.1.258.140.007843
ORF1ab/nsp31492T1492del1aCca-c67All0.000001
ORF1ab/nsp31492T1492del1aCCa-T17All0
ORF1ab/nsp31492T1492IaCcaTc77AY.1030.000043
ORF1ab/nsp31492T1492TacCacT77AY.750.000392
ORF1ab/nsp31492T1492delACC---77B.10.000064
ORF1ab/nsp31492T1492TacCacT77B.1.5750.002124
ORF1ab/nsp31492T1492IaCcaTc66AY.1210.000812
ORF1ab/nsp31492T1492IaCcaTc66B.1.20.000053
ORF1ab/nsp31492T1492TacCacT66B.1.4290.000141
ORF1ab/nsp31492T1492IaCcaTc55AY.1020.000133
ORF1ab/nsp31492T1492TacCacT55AY.1160.001434
ORF1ab/nsp31492T1492TacCacT55AY.200.000194
ORF1ab/nsp31492T1492IaCcaTc55AY.46.10.005133
ORF1ab/nsp31492T1492IaCcaTc55B.1.1770.000066
ORF1ab/nsp31492T1492NaCcaAc44AY.1030.000025
ORF1ab/nsp31492T1492NaCcaAc44AY.250.000024
ORF1ab/nsp31492T1492TacCacT44AY.360.000593
ORF1ab/nsp31492T1492delACC---44AY.430.000018
ORF1ab/nsp31492T1492TacCacT44B.1.1.440.009639
ORF1ab/nsp31492T1492TacCacA24B.1.1.5190.000079
ORF1ab/nsp31492T1492TacCacT24B.1.1.5190.000079
ORF1ab/nsp31492T1492TacCacT34B.1.1770.00004
ORF1ab/nsp31492T1492TacCacG14B.1.1770.000013
ORF1ab/nsp31492T1492TacCacT44B.1.5260.000094
ORF1ab/nsp31492T1492PAccCcc23All0
ORF1ab/nsp31492T1492PAcCCcA13All0
ORF1ab/nsp31492T1492TacCacT33AY.1000.000138
ORF1ab/nsp31492T1492TacCacT33AY.1020.00008
ORF1ab/nsp31492T1492IaCcaTc33AY.230.000209
ORF1ab/nsp31492T1492IaCcaTc33AY.29.10.000662
ORF1ab/nsp31492T1492IaCcaTc33AY.390.000074
ORF1ab/nsp31492T1492IaCcaTc33AY.39.10.000119
ORF1ab/nsp31492T1492delACC---33AY.40.000005
ORF1ab/nsp31492T1492delACC---33B.1.1.2180.023077
ORF1ab/nsp31492T1492delACC---33B.1.1770.00004
ORF1ab/nsp31492T1492delACC---33B.1.4110.011111
ORF1ab/nsp31492T1492TacCacT33B.1.5820.001472
ORF1ab/nsp31492T1492AAccGcc33B.1.617.20.000011
ORF1ab/nsp31492T1492delACC---220.111111
ORF1ab/nsp31492T1492IaCcaTc22AY.1050.001286
ORF1ab/nsp31492T1492IaCcaTc22AY.1130.000285
ORF1ab/nsp31492T1492IaCcaTc22AY.1200.000074
ORF1ab/nsp31492T1492TacCacT22AY.230.000139
ORF1ab/nsp31492T1492delACC---22AY.250.000012
ORF1ab/nsp31492T1492TacCacT12AY.340.000097
ORF1ab/nsp31492T1492TacCacA12AY.340.000097
ORF1ab/nsp31492T1492TacCacT22AY.350.000466
ORF1ab/nsp31492T1492TacCacT22AY.450.000243
ORF1ab/nsp31492T1492IaCcaTc22AY.460.000208
ORF1ab/nsp31492T1492TacCacT22AY.50.000041
ORF1ab/nsp31492T1492TacCacT22AY.60.000082
ORF1ab/nsp31492T1492IaCcaTc22AY.840.000875
ORF1ab/nsp31492T1492AAccGcc22AY.920.000575
ORF1ab/nsp31492T1492TacCacT22AY.98.10.000097
ORF1ab/nsp31492T1492TacCacT22B0.000256
ORF1ab/nsp31492T1492IaCcaTc22B.10.000018
ORF1ab/nsp31492T1492del1aCca-c22B.10.000018
ORF1ab/nsp31492T1492delACC---22B.1.10.000036
ORF1ab/nsp31492T1492IaCcaTc22B.1.10.000036
ORF1ab/nsp31492T1492del1aCCa-T12B.1.10.000018
ORF1ab/nsp31492T1492del1aCca-c12B.1.10.000018
ORF1ab/nsp31492T1492TacCacT22B.1.1.2220.000408
ORF1ab/nsp31492T1492TacCacT22B.1.1.2790.002242
ORF1ab/nsp31492T1492TacCacT22B.1.1.2910.001485
ORF1ab/nsp31492T1492TacCacT22B.1.1.3060.000877
ORF1ab/nsp31492T1492SAccTcc22B.1.1.70.000002
ORF1ab/nsp31492T1492TacCacT22B.1.1260.002551
ORF1ab/nsp31492T1492TacCacT22B.1.1280.001271
ORF1ab/nsp31492T1492AAccGcc22B.1.1600.000062
ORF1ab/nsp31492T1492delACC---22B.1.177.620.002384
ORF1ab/nsp31492T1492IaCcaTc22B.1.2430.000139
ORF1ab/nsp31492T1492TacCacT22B.1.2430.000139
ORF1ab/nsp31492T1492TacCacT22B.1.2920.117647
ORF1ab/nsp31492T1492TacCacT22B.1.3690.00057
ORF1ab/nsp31492T1492TacCacA12B.1.3910.001127
ORF1ab/nsp31492T1492TacCacT12B.1.3910.001127
ORF1ab/nsp31492T1492TacCacT22B.1.4390.011834
ORF1ab/nsp31492T1492TacCacT22B.1.5960.000174
ORF1ab/nsp31492T1492NaCcaAc22B.1.617.20.000008
ORF1ab/nsp31492T1492delACC---22B.1.617.20.000008
ORF1ab/nsp31492T1492TacCacT22D.20.00015
ORF1ab/nsp31492T1492IaCcaTc22P.10.000032
ORF1ab/nsp31492T1492TacCacT22Q.20.001227
ORF1ab/nsp31492T1492TacCacA12R.10.00009
ORF1ab/nsp31492T1492TacCacT12R.10.00009
ORF1ab/nsp31492T1492NaCcaAc11A.10.000282
ORF1ab/nsp31492T1492TacCacT11A.2.30.004739
ORF1ab/nsp31492T1492TacCacT11A.2.5.20.001572
ORF1ab/nsp31492T1492delACC---11AD.20.000219
ORF1ab/nsp31492T1492TacCacT11AD.20.000219
ORF1ab/nsp31492T1492KaCCaAG11All0
ORF1ab/nsp31492T1492VACCGTA11All0
ORF1ab/nsp31492T1492SAccTcc11AU.10.001266
ORF1ab/nsp31492T1492TacCacT11AY.10.000396
ORF1ab/nsp31492T1492delACC---11AY.1010.00049
ORF1ab/nsp31492T1492delACC---11AY.1030.000006
ORF1ab/nsp31492T1492delACC---11AY.1080.001103
ORF1ab/nsp31492T1492TacCacT11AY.1140.000231
ORF1ab/nsp31492T1492IaCcaTc11AY.1180.000063
ORF1ab/nsp31492T1492delACC---11AY.1190.000035
ORF1ab/nsp31492T1492TacCacA11AY.1190.000035
ORF1ab/nsp31492T1492delACC---11AY.1200.000037
ORF1ab/nsp31492T1492TacCacT11AY.130.000161
ORF1ab/nsp31492T1492IaCcaTc11AY.200.000039
ORF1ab/nsp31492T1492TacCacT11AY.240.000431
ORF1ab/nsp31492T1492IaCcaTc11AY.260.000028
ORF1ab/nsp31492T1492TacCacT11AY.29.10.000221
ORF1ab/nsp31492T1492delACC---11AY.30.00001
ORF1ab/nsp31492T1492TacCacT11AY.3.10.000085
ORF1ab/nsp31492T1492IaCcaTc11AY.330.000067
ORF1ab/nsp31492T1492delACC---11AY.330.000067
ORF1ab/nsp31492T1492AAccGcc11AY.340.000097
ORF1ab/nsp31492T1492IaCcaTc11AY.34.10.00051
ORF1ab/nsp31492T1492delACC---11AY.360.000148
ORF1ab/nsp31492T1492TacCacT11AY.39.10.00004
ORF1ab/nsp31492T1492PAccCcc11AY.40.000002
ORF1ab/nsp31492T1492SAccTcc11AY.40.000002
ORF1ab/nsp31492T1492delACC---11AY.4.30.000842
ORF1ab/nsp31492T1492delACC---11AY.4.50.000107
ORF1ab/nsp31492T1492SAccTcc11AY.430.000004
ORF1ab/nsp31492T1492PAccCcc11AY.440.000006
ORF1ab/nsp31492T1492delACC---11AY.440.000006
ORF1ab/nsp31492T1492AAccGcc11AY.440.000006
ORF1ab/nsp31492T1492TacCacT11AY.460.000104
ORF1ab/nsp31492T1492IaCcaTc11AY.46.20.000635
ORF1ab/nsp31492T1492SAccTcc11AY.46.40.000165
ORF1ab/nsp31492T1492IaCcaTc11AY.46.60.000072
ORF1ab/nsp31492T1492TacCacT11AY.470.000031
ORF1ab/nsp31492T1492IaCcaTc11AY.50.000021
ORF1ab/nsp31492T1492delACC---11AY.660.00107
ORF1ab/nsp31492T1492delACC---11AY.670.000464
ORF1ab/nsp31492T1492SAcCTcT11AY.690.000187
ORF1ab/nsp31492T1492NaCcaAc11AY.690.000187
ORF1ab/nsp31492T1492delACC---11AY.760.004831
ORF1ab/nsp31492T1492KaCCaAG11AY.840.000437
ORF1ab/nsp31492T1492TacCacT11AY.90.000068
ORF1ab/nsp31492T1492delACC---11AY.90.000068
ORF1ab/nsp31492T1492TacCacA11AY.9.10.000084
ORF1ab/nsp31492T1492IaCcaTc11AY.9.10.000084
ORF1ab/nsp31492T1492TacCacT11AY.9.20.000037
ORF1ab/nsp31492T1492IaCcaTc11AY.920.000287
ORF1ab/nsp31492T1492IaCcaTc11AY.98.10.000048
ORF1ab/nsp31492T1492delACC---11AY.990.001049
ORF1ab/nsp31492T1492SAccTcc11B0.000128
ORF1ab/nsp31492T1492IaCcaTc11B0.000128
ORF1ab/nsp31492T1492AAccGcc11B.10.000009
ORF1ab/nsp31492T1492NaCcaAc11B.10.000009
ORF1ab/nsp31492T1492IaCcaTc11B.1.1.1210.002427
ORF1ab/nsp31492T1492TacCacT11B.1.1.1350.004695
ORF1ab/nsp31492T1492SAccTcc11B.1.1.2410.00207
ORF1ab/nsp31492T1492IaCcaTc11B.1.1.3170.000412
ORF1ab/nsp31492T1492TacCacT11B.1.1.3170.000412
ORF1ab/nsp31492T1492delACC---11B.1.1.370.000193
ORF1ab/nsp31492T1492TacCacT11B.1.1.390.00051
ORF1ab/nsp31492T1492NaCcaAc11B.1.1.4090.002833
ORF1ab/nsp31492T1492TacCacT11B.1.1.4200.001006
ORF1ab/nsp31492T1492TacCacT11B.1.1.4590.015385
ORF1ab/nsp31492T1492delACC---11B.1.1.460.004367
ORF1ab/nsp31492T1492delACC---11B.1.1.4640.001473
ORF1ab/nsp31492T1492delACC---11B.1.1.5250.005464
ORF1ab/nsp31492T1492AAccGcc11B.1.1.70.000001
ORF1ab/nsp31492T1492SAccTcc11B.1.160.220.006757
ORF1ab/nsp31492T1492TacCacT11B.1.177.200.001517
ORF1ab/nsp31492T1492IaCcaTc11B.1.177.210.000076
ORF1ab/nsp31492T1492TacCacT11B.1.177.210.000076
ORF1ab/nsp31492T1492TacCacT11B.1.177.50.001242
ORF1ab/nsp31492T1492delACC---11B.1.177.60.000977
ORF1ab/nsp31492T1492TacCacT11B.1.177.750.001041
ORF1ab/nsp31492T1492delACC---11B.1.177.90.001332
ORF1ab/nsp31492T1492TacCacT11B.1.2210.000071
ORF1ab/nsp31492T1492IaCcaTc11B.1.2210.000071
ORF1ab/nsp31492T1492IaCcaTc11B.1.2340.000132
ORF1ab/nsp31492T1492NaCcaAc11B.1.2430.00007
ORF1ab/nsp31492T1492TacCacT11B.1.2580.000067
ORF1ab/nsp31492T1492delACC---11B.1.2650.001271
ORF1ab/nsp31492T1492TacCacT11B.1.3490.000715
ORF1ab/nsp31492T1492AAccGcc11B.1.3510.00003
ORF1ab/nsp31492T1492TacCacA11B.1.351.20.000303
ORF1ab/nsp31492T1492TacCacT11B.1.36.350.002604
ORF1ab/nsp31492T1492TacCacT11B.1.3890.001002
ORF1ab/nsp31492T1492delACC---11B.1.416.10.001563
ORF1ab/nsp31492T1492IaCcaTc11B.1.4290.000024
ORF1ab/nsp31492T1492del1aCca-c11B.1.4290.000024
ORF1ab/nsp31492T1492delACC---11B.1.4530.003236
ORF1ab/nsp31492T1492TacCacT11B.1.4560.003268
ORF1ab/nsp31492T1492NaCcaAc11B.1.5250.000113
ORF1ab/nsp31492T1492TacCacT11B.1.5250.000113
ORF1ab/nsp31492T1492delACC---11B.1.5260.000024
ORF1ab/nsp31492T1492delACC---11B.1.5330.009615
ORF1ab/nsp31492T1492TacCacT11B.1.5610.000397
ORF1ab/nsp31492T1492del1aCca-c11B.1.5640.000426
ORF1ab/nsp31492T1492TacCacT11B.1.5770.000687
ORF1ab/nsp31492T1492delACC---11B.1.5770.000687
ORF1ab/nsp31492T1492delACC---11B.1.5960.000087
ORF1ab/nsp31492T1492del1aCca-c11B.1.5960.000087
ORF1ab/nsp31492T1492AAcCGcA11B.1.617.10.000129
ORF1ab/nsp31492T1492VACCGTA11B.1.617.20.000004
ORF1ab/nsp31492T1492delACC---11B.1.6210.000089
ORF1ab/nsp31492T1492delACC---11B.1.621.10.000506
ORF1ab/nsp31492T1492TacCacT11B.1.6370.000073
ORF1ab/nsp31492T1492NaCcaAc11B.1.6370.000073
ORF1ab/nsp31492T1492IaCcaTc11B.1.6370.000073
ORF1ab/nsp31492T1492TacCacT11B.1.80.001972
ORF1ab/nsp31492T1492AAccGcc11B.190.037037
ORF1ab/nsp31492T1492TacCacA11B.6.60.000889
ORF1ab/nsp31492T1492PAcCCcA11C.350.000774
ORF1ab/nsp31492T1492IaCcaTc11C.350.000774
ORF1ab/nsp31492T1492delACC---11C.350.000774
ORF1ab/nsp31492T1492TacCacT11N.30.005814
ORF1ab/nsp31492T1492AAccGcc11P.10.000016
ORF1ab/nsp31492T1492AAccGcc11P.1.10.000318
ORF1ab/nsp31492T1492TacCacT11P.1.10.000318
ORF1ab/nsp31492T1492delACC---11P.1.150.000232
ORF1ab/nsp31492T1492TacCacT11P.1.70.000319