CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1484 | P1484S | P2302S | nonsyn | Cct | Tct | 726 | 723 | 0.995868 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484S | P2302S | nonsyn | CcT | TcC | 726 | 1 | 0.00137741 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484S | P2302S | nonsyn | CcT | TcA | 726 | 1 | 0.00137741 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484S | P2302S | nonsyn | CCt | AGt | 726 | 1 | 0.00137741 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484P | P2302P | syn | ccT | ccC | 683 | 494 | 0.72328 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484P | P2302P | syn | ccT | ccG | 683 | 171 | 0.250366 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484P | P2302P | syn | ccT | ccA | 683 | 18 | 0.0263543 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484L | P2302L | nonsyn | cCt | cTt | 194 | 190 | 0.979381 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484L | P2302L | nonsyn | cCT | cTG | 194 | 2 | 0.0103093 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484L | P2302L | nonsyn | cCT | cTA | 194 | 1 | 0.00515464 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484L | P2302L | nonsyn | CCT | TTA | 194 | 1 | 0.00515464 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484del | P2302del | del | CCT | --- | 100 | 100 | 1 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484R | P2302R | nonsyn | cCt | cGt | 23 | 20 | 0.869565 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484R | P2302R | nonsyn | cCT | cGC | 23 | 2 | 0.0869565 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484R | P2302R | nonsyn | cCT | cGA | 23 | 1 | 0.0434783 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484H | P2302H | nonsyn | cCt | cAt | 13 | 13 | 1 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484T | P2302T | nonsyn | Cct | Act | 9 | 9 | 1 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484F | P2302F | nonsyn | CCt | TTt | 2 | 2 | 1 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484A | P2302A | nonsyn | Cct | Gct | 2 | 2 | 1 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484del1 | P2302del1 | del | ccT | cc- | 2 | 1 | 0.5 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484del1 | P2302del1 | del | Cct | -ct | 2 | 1 | 0.5 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484C | P2302C | nonsyn | CCt | TGt | 1 | 1 | 1 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484X | P2302X | nonsyn | CCT | TGA | 1 | 1 | 1 | 7169-7171 |
ORF1ab/nsp3 | 1484 | P1484Q | P2302Q | nonsyn | cCT | cAA | 1 | 1 | 1 | 7169-7171 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 723 | 726 | All | 0.000138 |
ORF1ab/nsp3 | 1484 | P1484S | CcT | TcA | 1 | 726 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484S | CCt | AGt | 1 | 726 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484S | CcT | TcC | 1 | 726 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 494 | 683 | All | 0.000094 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 171 | 683 | All | 0.000033 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 18 | 683 | All | 0.000003 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 206 | 225 | B.1.1.7 | 0.000184 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 19 | 225 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 190 | 194 | All | 0.000036 |
ORF1ab/nsp3 | 1484 | P1484L | cCT | cTG | 2 | 194 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484L | cCT | cTA | 1 | 194 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484L | CCT | TTA | 1 | 194 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 189 | 190 | AY.43 | 0.000837 |
ORF1ab/nsp3 | 1484 | P1484S | CCt | AGt | 1 | 190 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 130 | 134 | B.1.2 | 0.001145 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 4 | 134 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 110 | 110 | B.1.1.391 | 0.940171 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 101 | 101 | AY.4 | 0.000157 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 100 | 100 | All | 0.000019 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 61 | 61 | AY.47 | 0.001897 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 51 | 54 | AY.4 | 0.000079 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 3 | 54 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 47 | 47 | AY.103 | 0.000292 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 46 | 46 | AY.3 | 0.000458 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 39 | 39 | AY.29 | 0.000615 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 32 | 32 | B.1.617.2 | 0.00012 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 26 | 26 | AY.4 | 0.00004 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp3 | 1484 | P1484R | cCt | cGt | 20 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 1484 | P1484R | cCT | cGC | 2 | 23 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484R | cCT | cGA | 1 | 23 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 21 | 21 | AY.3 | 0.000209 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 19 | 19 | B.1.427 | 0.000959 |
ORF1ab/nsp3 | 1484 | P1484H | cCt | cAt | 13 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 12 | 12 | AY.39 | 0.000297 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 8 | 12 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 3 | 12 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 1 | 12 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1484 | P1484T | Cct | Act | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 7 | 9 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 2 | 9 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1484 | P1484R | cCt | cGt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1484 | P1484R | cCt | cGt | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 3 | 6 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 3 | 6 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 6 | 6 | AY.73 | 0.003992 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 3 | 5 | 0.166667 | |
ORF1ab/nsp3 | 1484 | P1484S | CcT | TcA | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484S | CcT | TcC | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 1484 | P1484H | cCt | cAt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 4 | 4 | B.1.1.218 | 0.030769 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 4 | 4 | B.1.1.433 | 0.005698 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484L | cCT | cTA | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484L | CCT | TTA | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 1484 | P1484T | Cct | Act | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 3 | 3 | B.1.9.4 | 0.018405 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484R | cCT | cGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484R | cCt | cGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484F | CCt | TTt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484A | Cct | Gct | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484del1 | ccT | cc- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484del1 | Cct | -ct | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1484 | P1484H | cCt | cAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 1484 | P1484H | cCt | cAt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 2 | 2 | B.1.1.462 | 0.017241 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 2 | 2 | B.1.1.524 | 0.041667 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 2 | 2 | B.1.411 | 0.007407 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1484 | P1484X | CCT | TGA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484F | CCt | TTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484C | CCt | TGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1484 | P1484T | Cct | Act | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1484 | P1484C | CCt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484X | CCT | TGA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484Q | cCT | cAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1484 | P1484T | Cct | Act | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1484 | P1484H | cCt | cAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1484 | P1484H | cCt | cAt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1484 | P1484H | cCt | cAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1484 | P1484T | Cct | Act | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1484 | P1484R | cCT | cGC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1484 | P1484Q | cCT | cAA | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1484 | P1484A | Cct | Gct | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 1484 | P1484F | CCt | TTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1484 | P1484L | cCT | cTG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1484 | P1484H | cCt | cAt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1484 | P1484H | cCt | cAt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1484 | P1484T | Cct | Act | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1484 | P1484del1 | ccT | cc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1484 | P1484T | Cct | Act | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1484 | P1484T | Cct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.1.91 | 0.166667 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1484 | P1484del1 | Cct | -ct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1484 | P1484L | cCT | cTG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1484 | P1484A | Cct | Gct | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccC | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1484 | P1484R | cCt | cGt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 1484 | P1484P | ccT | ccA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1484 | P1484R | cCT | cGC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1484 | P1484S | Cct | Tct | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1484 | P1484del | CCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1484 | P1484L | cCt | cTt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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