CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1481

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31481D1481DD2299DsyngaCgaT5166516617160-7162
ORF1ab/nsp31481D1481ED2299EnonsyngaCgaA110010670.977160-7162
ORF1ab/nsp31481D1481ED2299EnonsyngaCgaG1100330.037160-7162
ORF1ab/nsp31481D1481ND2299NnonsynGacAac6646630.9984947160-7162
ORF1ab/nsp31481D1481ND2299NnonsynGaCAaT66410.001506027160-7162
ORF1ab/nsp31481D1481GD2299GnonsyngAcgGc1601580.98757160-7162
ORF1ab/nsp31481D1481GD2299GnonsyngACgGT16020.01257160-7162
ORF1ab/nsp31481D1481YD2299YnonsynGacTac1541510.9805197160-7162
ORF1ab/nsp31481D1481YD2299YnonsynGaCTaT15430.01948057160-7162
ORF1ab/nsp31481D1481HD2299HnonsynGacCac13113117160-7162
ORF1ab/nsp31481D1481delD2299deldelGAC---10310317160-7162
ORF1ab/nsp31481D1481AD2299AnonsyngAcgCc18170.9444447160-7162
ORF1ab/nsp31481D1481AD2299AnonsyngACgCT1810.05555567160-7162
ORF1ab/nsp31481D1481VD2299VnonsyngAcgTc980.8888897160-7162
ORF1ab/nsp31481D1481VD2299VnonsyngACgTT910.1111117160-7162
ORF1ab/nsp31481D1481SD2299SnonsynGAcAGc640.6666677160-7162
ORF1ab/nsp31481D1481SD2299SnonsynGACTCT610.1666677160-7162
ORF1ab/nsp31481D1481SD2299SnonsynGAcTCc610.1666677160-7162
ORF1ab/nsp31481D1481ID2299InonsynGAcATc2217160-7162
ORF1ab/nsp31481D1481FD2299FnonsynGACTTT210.57160-7162
ORF1ab/nsp31481D1481FD2299FnonsynGAcTTc210.57160-7162
ORF1ab/nsp31481D1481CD2299CnonsynGACTGT210.57160-7162
ORF1ab/nsp31481D1481CD2299CnonsynGAcTGc210.57160-7162
ORF1ab/nsp31481D1481del2D2299del2delgACg--210.57160-7162
ORF1ab/nsp31481D1481del2D2299del2delGAc--c210.57160-7162
ORF1ab/nsp31481D1481del1D2299del1delgaCga-210.57160-7162
ORF1ab/nsp31481D1481del1D2299del1delGac-ac210.57160-7162
ORF1ab/nsp31481D1481XD2299XnonsynGaCTaA1117160-7162
ORF1ab/nsp31481D1481KD2299KnonsynGaCAaA1117160-7162
ORF1ab/nsp31481D1481TD2299TnonsynGAcACc1117160-7162

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31481D1481DgaCgaT51665166All0.000988
ORF1ab/nsp31481D1481EgaCgaA10671100All0.000204
ORF1ab/nsp31481D1481EgaCgaG331100All0.000006
ORF1ab/nsp31481D1481DgaCgaT10071007B.1.1.70.000901
ORF1ab/nsp31481D1481EgaCgaA886886AY.430.003925
ORF1ab/nsp31481D1481NGacAac663664All0.000127
ORF1ab/nsp31481D1481NGaCAaT1664All0
ORF1ab/nsp31481D1481DgaCgaT427427AY.40.000665
ORF1ab/nsp31481D1481NGacAac348348B.1.4290.008188
ORF1ab/nsp31481D1481DgaCgaT330330B.1.360.048147
ORF1ab/nsp31481D1481DgaCgaT260260B.1.20.002289
ORF1ab/nsp31481D1481DgaCgaT237237D.20.017785
ORF1ab/nsp31481D1481DgaCgaT197197AY.430.000873
ORF1ab/nsp31481D1481DgaCgaT194194B.1.617.20.00073
ORF1ab/nsp31481D1481DgaCgaT170170AY.250.001023
ORF1ab/nsp31481D1481DgaCgaT169169B.1.258.170.017571
ORF1ab/nsp31481D1481DgaCgaT163163AY.420.006558
ORF1ab/nsp31481D1481GgAcgGc158160All0.00003
ORF1ab/nsp31481D1481GgACgGT2160All0
ORF1ab/nsp31481D1481YGacTac151154All0.000029
ORF1ab/nsp31481D1481YGaCTaT3154All0.000001
ORF1ab/nsp31481D1481HGacCac131131All0.000025
ORF1ab/nsp31481D1481EgaCgaA90120AY.40.00014
ORF1ab/nsp31481D1481EgaCgaG30120AY.40.000047
ORF1ab/nsp31481D1481delGAC---103103All0.00002
ORF1ab/nsp31481D1481GgAcgGc103103AY.40.00016
ORF1ab/nsp31481D1481DgaCgaT9393AY.440.000566
ORF1ab/nsp31481D1481DgaCgaT9090P.1.140.004302
ORF1ab/nsp31481D1481DgaCgaT8383AY.1020.002201
ORF1ab/nsp31481D1481DgaCgaT8282AY.1030.000509
ORF1ab/nsp31481D1481DgaCgaT7171AY.46.40.01168
ORF1ab/nsp31481D1481DgaCgaT6666B.10.000605
ORF1ab/nsp31481D1481DgaCgaT6666B.1.1.5190.002621
ORF1ab/nsp31481D1481NGacAac5960B.1.1.70.000053
ORF1ab/nsp31481D1481NGaCAaT160B.1.1.70.000001
ORF1ab/nsp31481D1481DgaCgaT5959B.1.10.00107
ORF1ab/nsp31481D1481DgaCgaT5252B.1.2230.144444
ORF1ab/nsp31481D1481DgaCgaT5151P.10.000803
ORF1ab/nsp31481D1481DgaCgaT5050AY.30.000497
ORF1ab/nsp31481D1481DgaCgaT4949B.1.5260.001152
ORF1ab/nsp31481D1481DgaCgaT4646B.1.177.540.027896
ORF1ab/nsp31481D1481DgaCgaT4646B.1.2580.003061
ORF1ab/nsp31481D1481DgaCgaT4444B.1.1770.000579
ORF1ab/nsp31481D1481DgaCgaT3939AY.4.50.004192
ORF1ab/nsp31481D1481DgaCgaT3939B.1.1.1700.048628
ORF1ab/nsp31481D1481DgaCgaT3535B.1.177.40.007387
ORF1ab/nsp31481D1481NGacAac3434B.1.177.160.022591
ORF1ab/nsp31481D1481DgaCgaT3131AY.1000.001426
ORF1ab/nsp31481D1481NGacAac3131AY.290.000489
ORF1ab/nsp31481D1481DgaCgaT3030AY.290.000473
ORF1ab/nsp31481D1481YGacTac2929AY.40.000045
ORF1ab/nsp31481D1481delGAC---2828B.1.1.70.000025
ORF1ab/nsp31481D1481HGacCac2525AY.360.003705
ORF1ab/nsp31481D1481DgaCgaT2323AY.5.30.00776
ORF1ab/nsp31481D1481GgAcgGc2323B.1.1.70.000021
ORF1ab/nsp31481D1481DgaCgaT2222AD.20.004817
ORF1ab/nsp31481D1481YGacTac2222AY.250.000132
ORF1ab/nsp31481D1481NGacAac2222AY.39.10.000871
ORF1ab/nsp31481D1481DgaCgaT2222AY.4.20.000477
ORF1ab/nsp31481D1481DgaCgaT2222AY.5.40.006087
ORF1ab/nsp31481D1481DgaCgaT2222C.370.002553
ORF1ab/nsp31481D1481DgaCgaT2121B.1.4290.000494
ORF1ab/nsp31481D1481YGacTac2121B.1.4290.000494
ORF1ab/nsp31481D1481DgaCgaT2020AY.1200.000744
ORF1ab/nsp31481D1481DgaCgaT2020AY.9.20.000735
ORF1ab/nsp31481D1481NGacAac2020B.1.617.20.000075
ORF1ab/nsp31481D1481DgaCgaT1919B.1.1.2220.003876
ORF1ab/nsp31481D1481DgaCgaT1919B.1.1600.000593
ORF1ab/nsp31481D1481AgAcgCc1718All0.000003
ORF1ab/nsp31481D1481AgACgCT118All0
ORF1ab/nsp31481D1481DgaCgaT1818AY.260.00051
ORF1ab/nsp31481D1481DgaCgaT1818B.1.3510.000535
ORF1ab/nsp31481D1481DgaCgaT1818B.1.5960.001568
ORF1ab/nsp31481D1481DgaCgaT1818C.360.016393
ORF1ab/nsp31481D1481EgaCgaA1717AY.1030.000106
ORF1ab/nsp31481D1481NGacAac1717AY.29.10.003749
ORF1ab/nsp31481D1481DgaCgaT1717AY.750.000952
ORF1ab/nsp31481D1481DgaCgaT1717B.1.1.2140.000943
ORF1ab/nsp31481D1481DgaCgaT1717B.1.1.2690.023004
ORF1ab/nsp31481D1481DgaCgaT1616AY.240.006897
ORF1ab/nsp31481D1481YGacTac1616B.1.1.70.000014
ORF1ab/nsp31481D1481DgaCgaT1414AY.1190.000494
ORF1ab/nsp31481D1481DgaCgaT1414AY.200.000544
ORF1ab/nsp31481D1481HGacCac1414AY.50.000289
ORF1ab/nsp31481D1481DgaCgaT1414AY.60.000576
ORF1ab/nsp31481D1481DgaCgaT1414B.1.2430.000974
ORF1ab/nsp31481D1481HGacCac1313B.1.1.70.000012
ORF1ab/nsp31481D1481DgaCgaT1313B.1.2210.000923
ORF1ab/nsp31481D1481DgaCgaT1212AY.850.005126
ORF1ab/nsp31481D1481DgaCgaT1212B.1.177.350.008293
ORF1ab/nsp31481D1481DgaCgaT1212B.1.6120.03183
ORF1ab/nsp31481D1481DgaCgaT1111AY.470.000342
ORF1ab/nsp31481D1481EgaCgaA911B.1.617.20.000034
ORF1ab/nsp31481D1481EgaCgaG211B.1.617.20.000008
ORF1ab/nsp31481D1481DgaCgaT1010AY.120.10.00321
ORF1ab/nsp31481D1481DgaCgaT1010AY.390.000247
ORF1ab/nsp31481D1481DgaCgaT1010B.1.1.3920.526316
ORF1ab/nsp31481D1481DgaCgaT1010B.1.3910.011274
ORF1ab/nsp31481D1481VgAcgTc89All0.000002
ORF1ab/nsp31481D1481VgACgTT19All0
ORF1ab/nsp31481D1481NGacAac99AY.250.000054
ORF1ab/nsp31481D1481NGacAac99AY.40.000014
ORF1ab/nsp31481D1481NGacAac99B.1.1600.000281
ORF1ab/nsp31481D1481YGacTac99B.1.1770.000119
ORF1ab/nsp31481D1481EgaCgaA99B.1.2210.000639
ORF1ab/nsp31481D1481NGacAac99B.1.4270.000454
ORF1ab/nsp31481D1481HGacCac99B.1.4290.000212
ORF1ab/nsp31481D1481DgaCgaT99Q.10.001137
ORF1ab/nsp31481D1481YGacTac88B.10.000073
ORF1ab/nsp31481D1481NGacAac88B.1.20.00007
ORF1ab/nsp31481D1481DgaCgaT88B.1.2340.001056
ORF1ab/nsp31481D1481DgaCgaT88P.1.10.002541
ORF1ab/nsp31481D1481EgaCgaA77AY.250.000042
ORF1ab/nsp31481D1481DgaCgaT77AY.330.000467
ORF1ab/nsp31481D1481HGacCac77AY.40.000011
ORF1ab/nsp31481D1481DgaCgaT77AY.46.60.000505
ORF1ab/nsp31481D1481delGAC---77B.10.000064
ORF1ab/nsp31481D1481NGacAac77B.10.000064
ORF1ab/nsp31481D1481HGacCac77B.1.1.630.002701
ORF1ab/nsp31481D1481EgaCgaA77B.1.1.70.000006
ORF1ab/nsp31481D1481delGAC---77B.1.1770.000092
ORF1ab/nsp31481D1481DgaCgaT77B.1.177.210.000535
ORF1ab/nsp31481D1481DgaCgaT77B.1.177.420.006261
ORF1ab/nsp31481D1481DgaCgaT77B.1.177.620.008343
ORF1ab/nsp31481D1481DgaCgaT77B.1.4270.000353
ORF1ab/nsp31481D1481SGAcAGc460.222222
ORF1ab/nsp31481D1481SGACTCT160.055556
ORF1ab/nsp31481D1481SGAcTCc160.055556
ORF1ab/nsp31481D1481SGAcAGc46All0.000001
ORF1ab/nsp31481D1481SGAcTCc16All0
ORF1ab/nsp31481D1481SGACTCT16All0
ORF1ab/nsp31481D1481NGacAac66AY.1030.000037
ORF1ab/nsp31481D1481DgaCgaT66AY.1170.000507
ORF1ab/nsp31481D1481DgaCgaT66AY.98.10.000291
ORF1ab/nsp31481D1481DgaCgaT66B.1.2320.003224
ORF1ab/nsp31481D1481HGacCac66B.1.4270.000303
ORF1ab/nsp31481D1481NGacAac66B.1.5510.007742
ORF1ab/nsp31481D1481NGacAac66P.10.000095
ORF1ab/nsp31481D1481YGacTac350.166667
ORF1ab/nsp31481D1481YGaCTaT250.111111
ORF1ab/nsp31481D1481EgaCgaA55AY.23.10.002087
ORF1ab/nsp31481D1481NGacAac55AY.30.00005
ORF1ab/nsp31481D1481DgaCgaT55AY.3.10.000426
ORF1ab/nsp31481D1481DgaCgaT55AY.340.000485
ORF1ab/nsp31481D1481NGacAac55AY.440.00003
ORF1ab/nsp31481D1481HGacCac55AY.440.00003
ORF1ab/nsp31481D1481NGacAac55B.1.177.430.007386
ORF1ab/nsp31481D1481DgaCgaT55B.1.177.450.001906
ORF1ab/nsp31481D1481DgaCgaT55B.1.177.600.001092
ORF1ab/nsp31481D1481DgaCgaT55B.1.2060.004078
ORF1ab/nsp31481D1481DgaCgaT55B.1.36.100.023923
ORF1ab/nsp31481D1481GgAcgGc340.166667
ORF1ab/nsp31481D1481GgACgGT140.055556
ORF1ab/nsp31481D1481DgaCgaT44AY.1210.000541
ORF1ab/nsp31481D1481DgaCgaT44AY.270.000259
ORF1ab/nsp31481D1481HGacCac44AY.30.00004
ORF1ab/nsp31481D1481delGAC---44AY.40.000006
ORF1ab/nsp31481D1481NGacAac44AY.430.000018
ORF1ab/nsp31481D1481DgaCgaT44AY.50.000083
ORF1ab/nsp31481D1481DgaCgaT44AY.9.10.000335
ORF1ab/nsp31481D1481EgaCgaA34B.10.000027
ORF1ab/nsp31481D1481EgaCgaG14B.10.000009
ORF1ab/nsp31481D1481DgaCgaT44B.1.1.10.001307
ORF1ab/nsp31481D1481delGAC---44B.1.1.2180.030769
ORF1ab/nsp31481D1481DgaCgaT44B.1.1.3480.003185
ORF1ab/nsp31481D1481DgaCgaT44B.1.1280.002541
ORF1ab/nsp31481D1481DgaCgaT44B.1.1460.016949
ORF1ab/nsp31481D1481NGacAac44B.1.1770.000053
ORF1ab/nsp31481D1481NGacAac44B.1.2790.002054
ORF1ab/nsp31481D1481NGacAac44B.1.360.000584
ORF1ab/nsp31481D1481NGacAac44B.1.36.70.016
ORF1ab/nsp31481D1481DgaCgaT44B.1.3990.007737
ORF1ab/nsp31481D1481HGacCac44B.1.438.10.000429
ORF1ab/nsp31481D1481DgaCgaT44B.1.6370.000292
ORF1ab/nsp31481D1481DgaCgaT44P.20.000747
ORF1ab/nsp31481D1481DgaCgaT44R.10.00036
ORF1ab/nsp31481D1481GgAcgGc33A0.001161
ORF1ab/nsp31481D1481EgaCgaA33AY.1020.00008
ORF1ab/nsp31481D1481HGacCac33AY.1030.000019
ORF1ab/nsp31481D1481EgaCgaA33AY.1180.000188
ORF1ab/nsp31481D1481DgaCgaT33AY.230.000209
ORF1ab/nsp31481D1481DgaCgaT33AY.39.10.000119
ORF1ab/nsp31481D1481YGacTac33AY.430.000013
ORF1ab/nsp31481D1481AgAcgCc33AY.430.000013
ORF1ab/nsp31481D1481DgaCgaT33AY.460.000312
ORF1ab/nsp31481D1481DgaCgaT33AY.510.002727
ORF1ab/nsp31481D1481DgaCgaT33AY.610.000314
ORF1ab/nsp31481D1481DgaCgaT33AY.730.001996
ORF1ab/nsp31481D1481DgaCgaT33AY.840.001312
ORF1ab/nsp31481D1481DgaCgaT33AY.880.002653
ORF1ab/nsp31481D1481DgaCgaT33AY.90.000203
ORF1ab/nsp31481D1481DgaCgaT33AY.980.000237
ORF1ab/nsp31481D1481HGacCac33B.10.000027
ORF1ab/nsp31481D1481delGAC---33B.1.10.000054
ORF1ab/nsp31481D1481DgaCgaT33B.1.1.1280.021277
ORF1ab/nsp31481D1481AgAcgCc33B.1.1.2140.000166
ORF1ab/nsp31481D1481DgaCgaT33B.1.1.3690.001339
ORF1ab/nsp31481D1481DgaCgaT33B.1.1.710.018182
ORF1ab/nsp31481D1481DgaCgaT33B.1.177.800.005736
ORF1ab/nsp31481D1481DgaCgaT33B.1.177.860.00055
ORF1ab/nsp31481D1481YGacTac33B.1.20.000026
ORF1ab/nsp31481D1481DgaCgaT33B.1.36.170.001482
ORF1ab/nsp31481D1481GgAcgGc33B.1.4290.000071
ORF1ab/nsp31481D1481DgaCgaT33B.1.466.20.001174
ORF1ab/nsp31481D1481HGacCac33B.1.5260.000071
ORF1ab/nsp31481D1481EgaCgaA33B.1.5700.008824
ORF1ab/nsp31481D1481DgaCgaT33B.1.5950.000783
ORF1ab/nsp31481D1481DgaCgaT33B.1.6090.001438
ORF1ab/nsp31481D1481GgAcgGc33B.1.617.20.000011
ORF1ab/nsp31481D1481delGAC---33B.1.617.20.000011
ORF1ab/nsp31481D1481DgaCgaT33C.140.012987
ORF1ab/nsp31481D1481YGacTac33P.10.000047
ORF1ab/nsp31481D1481HGacCac33P.10.000047
ORF1ab/nsp31481D1481DgaCgaT33Q.80.000495
ORF1ab/nsp31481D1481DgaCgaT220.111111
ORF1ab/nsp31481D1481delGAC---220.111111
ORF1ab/nsp31481D1481NGacAac220.111111
ORF1ab/nsp31481D1481AgACgCT120.055556
ORF1ab/nsp31481D1481VgACgTT120.055556
ORF1ab/nsp31481D1481FGAcTTc120.055556
ORF1ab/nsp31481D1481FGACTTT120.055556
ORF1ab/nsp31481D1481CGAcTGc120.055556
ORF1ab/nsp31481D1481VgAcgTc120.055556
ORF1ab/nsp31481D1481AgAcgCc120.055556
ORF1ab/nsp31481D1481CGACTGT120.055556
ORF1ab/nsp31481D1481NGacAac22AD.20.000438
ORF1ab/nsp31481D1481IGAcATc22All0
ORF1ab/nsp31481D1481FGACTTT12All0
ORF1ab/nsp31481D1481CGACTGT12All0
ORF1ab/nsp31481D1481CGAcTGc12All0
ORF1ab/nsp31481D1481del2gACg--12All0
ORF1ab/nsp31481D1481del2GAc--c12All0
ORF1ab/nsp31481D1481del1gaCga-12All0
ORF1ab/nsp31481D1481del1Gac-ac12All0
ORF1ab/nsp31481D1481FGAcTTc12All0
ORF1ab/nsp31481D1481NGacAac22AY.1060.00067
ORF1ab/nsp31481D1481DgaCgaT22AY.1130.000285
ORF1ab/nsp31481D1481DgaCgaT22AY.1140.000462
ORF1ab/nsp31481D1481DgaCgaT22AY.34.10.00102
ORF1ab/nsp31481D1481DgaCgaT22AY.350.000466
ORF1ab/nsp31481D1481DgaCgaT22AY.360.000296
ORF1ab/nsp31481D1481GgAcgGc22AY.4.50.000215
ORF1ab/nsp31481D1481delGAC---22AY.4.50.000215
ORF1ab/nsp31481D1481delGAC---22AY.430.000009
ORF1ab/nsp31481D1481YGacTac22AY.440.000012
ORF1ab/nsp31481D1481EgaCgaA22AY.440.000012
ORF1ab/nsp31481D1481DgaCgaT22AY.46.10.002053
ORF1ab/nsp31481D1481DgaCgaT22AY.540.000191
ORF1ab/nsp31481D1481DgaCgaT22AY.690.000373
ORF1ab/nsp31481D1481DgaCgaT22AY.70.000392
ORF1ab/nsp31481D1481DgaCgaT22AY.700.000417
ORF1ab/nsp31481D1481NGacAac22AY.9.10.000167
ORF1ab/nsp31481D1481EgaCgaA22AY.99.20.000184
ORF1ab/nsp31481D1481YGacTac22B0.000256
ORF1ab/nsp31481D1481GgAcgGc22B.10.000018
ORF1ab/nsp31481D1481NGacAac22B.1.10.000036
ORF1ab/nsp31481D1481NGacAac22B.1.1.1640.010309
ORF1ab/nsp31481D1481DgaCgaT22B.1.1.2160.001781
ORF1ab/nsp31481D1481DgaCgaT22B.1.1.2410.004141
ORF1ab/nsp31481D1481DgaCgaT22B.1.1.2790.002242
ORF1ab/nsp31481D1481DgaCgaT22B.1.1.3540.008772
ORF1ab/nsp31481D1481DgaCgaT22B.1.1.3750.02381
ORF1ab/nsp31481D1481HGacCac22B.1.1.5190.000079
ORF1ab/nsp31481D1481DgaCgaT22B.1.1.610.017544
ORF1ab/nsp31481D1481DgaCgaT22B.1.1.630.000772
ORF1ab/nsp31481D1481AgAcgCc22B.1.1.70.000002
ORF1ab/nsp31481D1481YGacTac22B.1.1600.000062
ORF1ab/nsp31481D1481DgaCgaT22B.1.177.560.001335
ORF1ab/nsp31481D1481delGAC---22B.1.177.620.002384
ORF1ab/nsp31481D1481DgaCgaT22B.1.177.810.000379
ORF1ab/nsp31481D1481GgAcgGc22B.1.20.000018
ORF1ab/nsp31481D1481DgaCgaT22B.1.36.220.002415
ORF1ab/nsp31481D1481DgaCgaT22B.1.36.290.001035
ORF1ab/nsp31481D1481EgaCgaA22B.1.3690.00057
ORF1ab/nsp31481D1481delGAC---22B.1.4110.007407
ORF1ab/nsp31481D1481GgAcgGc22B.1.4270.000101
ORF1ab/nsp31481D1481NGacAac22B.1.4280.002041
ORF1ab/nsp31481D1481DgaCgaT22B.1.5250.000226
ORF1ab/nsp31481D1481DgaCgaT22B.1.5460.007407
ORF1ab/nsp31481D1481DgaCgaT22B.1.5750.000607
ORF1ab/nsp31481D1481delGAC---22B.1.5960.000174
ORF1ab/nsp31481D1481DgaCgaT22B.1.617.10.000258
ORF1ab/nsp31481D1481YGacTac22B.1.617.20.000008
ORF1ab/nsp31481D1481DgaCgaT22B.1.6210.000177
ORF1ab/nsp31481D1481YGacTac22B.1.6210.000177
ORF1ab/nsp31481D1481HGacCac22B.1.6370.000146
ORF1ab/nsp31481D1481delGAC---22C.350.001548
ORF1ab/nsp31481D1481GgAcgGc22P.1.10.000635
ORF1ab/nsp31481D1481DgaCgaT22P.1.150.000465
ORF1ab/nsp31481D1481DgaCgaT22P.1.170.000324
ORF1ab/nsp31481D1481EgaCgaA110.055556
ORF1ab/nsp31481D1481XGaCTaA110.055556
ORF1ab/nsp31481D1481DgaCgaT11A0.000387
ORF1ab/nsp31481D1481del2GAc--c11A0.000387
ORF1ab/nsp31481D1481DgaCgaT11A.10.000282
ORF1ab/nsp31481D1481YGacTac11A.20.000662
ORF1ab/nsp31481D1481DgaCgaT11A.2.50.000499
ORF1ab/nsp31481D1481DgaCgaT11A.280.002646
ORF1ab/nsp31481D1481delGAC---11AD.20.000219
ORF1ab/nsp31481D1481HGacCac11AE.80.000489
ORF1ab/nsp31481D1481TGAcACc11All0
ORF1ab/nsp31481D1481KGaCAaA11All0
ORF1ab/nsp31481D1481XGaCTaA11All0
ORF1ab/nsp31481D1481delGAC---11AY.1010.00049
ORF1ab/nsp31481D1481AgAcgCc11AY.1030.000006
ORF1ab/nsp31481D1481delGAC---11AY.1030.000006
ORF1ab/nsp31481D1481YGacTac11AY.1030.000006
ORF1ab/nsp31481D1481DgaCgaT11AY.1060.000335
ORF1ab/nsp31481D1481delGAC---11AY.1080.001103
ORF1ab/nsp31481D1481YGacTac11AY.1100.000113
ORF1ab/nsp31481D1481GgAcgGc11AY.1110.000183
ORF1ab/nsp31481D1481YGacTac11AY.1110.000183
ORF1ab/nsp31481D1481AgAcgCc11AY.1110.000183
ORF1ab/nsp31481D1481DgaCgaT11AY.116.10.000311
ORF1ab/nsp31481D1481NGacAac11AY.1170.000085
ORF1ab/nsp31481D1481EgaCgaA11AY.1170.000085
ORF1ab/nsp31481D1481DgaCgaT11AY.1180.000063
ORF1ab/nsp31481D1481NGacAac11AY.1180.000063
ORF1ab/nsp31481D1481HGacCac11AY.1180.000063
ORF1ab/nsp31481D1481delGAC---11AY.1190.000035
ORF1ab/nsp31481D1481EgaCgaA11AY.1190.000035
ORF1ab/nsp31481D1481DgaCgaT11AY.120.000316
ORF1ab/nsp31481D1481delGAC---11AY.1200.000037
ORF1ab/nsp31481D1481EgaCgaA11AY.130.000161
ORF1ab/nsp31481D1481DgaCgaT11AY.130.000161
ORF1ab/nsp31481D1481EgaCgaA11AY.140.000088
ORF1ab/nsp31481D1481DgaCgaT11AY.160.00038
ORF1ab/nsp31481D1481HGacCac11AY.200.000039
ORF1ab/nsp31481D1481EgaCgaA11AY.200.000039
ORF1ab/nsp31481D1481DgaCgaT11AY.220.002092
ORF1ab/nsp31481D1481DgaCgaT11AY.23.10.000417
ORF1ab/nsp31481D1481GgAcgGc11AY.240.000431
ORF1ab/nsp31481D1481YGacTac11AY.240.000431
ORF1ab/nsp31481D1481AgAcgCc11AY.250.000006
ORF1ab/nsp31481D1481delGAC---11AY.250.000006
ORF1ab/nsp31481D1481EgaCgaA11AY.260.000028
ORF1ab/nsp31481D1481YGacTac11AY.270.000065
ORF1ab/nsp31481D1481HGacCac11AY.290.000016
ORF1ab/nsp31481D1481DgaCgaT11AY.29.10.000221
ORF1ab/nsp31481D1481YGacTac11AY.30.00001
ORF1ab/nsp31481D1481EgaCgaA11AY.30.00001
ORF1ab/nsp31481D1481DgaCgaT11AY.320.000532
ORF1ab/nsp31481D1481GgAcgGc11AY.330.000067
ORF1ab/nsp31481D1481YGacTac11AY.34.10.00051
ORF1ab/nsp31481D1481delGAC---11AY.360.000148
ORF1ab/nsp31481D1481YGacTac11AY.360.000148
ORF1ab/nsp31481D1481DgaCgaT11AY.370.000316
ORF1ab/nsp31481D1481DgaCgaT11AY.380.000499
ORF1ab/nsp31481D1481YGacTac11AY.390.000025
ORF1ab/nsp31481D1481EgaCgaA11AY.390.000025
ORF1ab/nsp31481D1481YGacTac11AY.39.10.00004
ORF1ab/nsp31481D1481AgAcgCc11AY.40.000002
ORF1ab/nsp31481D1481delGAC---11AY.4.30.000842
ORF1ab/nsp31481D1481DgaCgaT11AY.4.40.000409
ORF1ab/nsp31481D1481del1gaCga-11AY.4.50.000107
ORF1ab/nsp31481D1481HGacCac11AY.410.000294
ORF1ab/nsp31481D1481DgaCgaT11AY.410.000294
ORF1ab/nsp31481D1481del1Gac-ac11AY.430.000004
ORF1ab/nsp31481D1481GgAcgGc11AY.430.000004
ORF1ab/nsp31481D1481VgAcgTc11AY.430.000004
ORF1ab/nsp31481D1481HGacCac11AY.430.000004
ORF1ab/nsp31481D1481VgAcgTc11AY.440.000006
ORF1ab/nsp31481D1481GgAcgGc11AY.440.000006
ORF1ab/nsp31481D1481DgaCgaT11AY.450.000122
ORF1ab/nsp31481D1481NGacAac11AY.460.000104
ORF1ab/nsp31481D1481DgaCgaT11AY.46.20.000635
ORF1ab/nsp31481D1481DgaCgaT11AY.46.50.000198
ORF1ab/nsp31481D1481DgaCgaT11AY.480.000465
ORF1ab/nsp31481D1481NGacAac11AY.50.000021
ORF1ab/nsp31481D1481NGacAac11AY.540.000095
ORF1ab/nsp31481D1481delGAC---11AY.540.000095
ORF1ab/nsp31481D1481DgaCgaT11AY.550.000917
ORF1ab/nsp31481D1481delGAC---11AY.590.00053
ORF1ab/nsp31481D1481delGAC---11AY.600.000938
ORF1ab/nsp31481D1481DgaCgaT11AY.650.000533
ORF1ab/nsp31481D1481delGAC---11AY.660.00107
ORF1ab/nsp31481D1481YGacTac11AY.670.000464
ORF1ab/nsp31481D1481DgaCgaT11AY.670.000464
ORF1ab/nsp31481D1481DgaCgaT11AY.680.000274
ORF1ab/nsp31481D1481DgaCgaT11AY.7.10.000113
ORF1ab/nsp31481D1481GgAcgGc11AY.710.000475
ORF1ab/nsp31481D1481NGacAac11AY.730.000665
ORF1ab/nsp31481D1481HGacCac11AY.740.000116
ORF1ab/nsp31481D1481DgaCgaT11AY.780.001541
ORF1ab/nsp31481D1481YGaCTaT11AY.840.000437
ORF1ab/nsp31481D1481HGacCac11AY.90.000068
ORF1ab/nsp31481D1481delGAC---11AY.90.000068
ORF1ab/nsp31481D1481EgaCgaA11AY.9.20.000037
ORF1ab/nsp31481D1481GgAcgGc11AY.9.20.000037
ORF1ab/nsp31481D1481TGAcACc11AY.9.20.000037
ORF1ab/nsp31481D1481EgaCgaA11AY.9.2.10.001976
ORF1ab/nsp31481D1481YGacTac11AY.950.000761
ORF1ab/nsp31481D1481HGacCac11AY.950.000761
ORF1ab/nsp31481D1481EgaCgaA11AY.98.10.000048
ORF1ab/nsp31481D1481DgaCgaT11AY.990.001049
ORF1ab/nsp31481D1481HGacCac11AY.990.001049
ORF1ab/nsp31481D1481DgaCgaT11AY.99.10.001553
ORF1ab/nsp31481D1481DgaCgaT11AZ.20.000821
ORF1ab/nsp31481D1481DgaCgaT11B0.000128
ORF1ab/nsp31481D1481AgAcgCc11B0.000128
ORF1ab/nsp31481D1481NGacAac11B0.000128
ORF1ab/nsp31481D1481KGaCAaA11B.10.000009
ORF1ab/nsp31481D1481AgAcgCc11B.10.000009
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.1290.009174
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.1630.007634
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.1640.005155
ORF1ab/nsp31481D1481YGacTac11B.1.1.1740.003378
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.1860.003436
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.2050.003717
ORF1ab/nsp31481D1481HGacCac11B.1.1.250.000569
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.250.000569
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.2660.012195
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.280.000311
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.2940.001266
ORF1ab/nsp31481D1481NGacAac11B.1.1.2940.001266
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.2980.000862
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.30.008696
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.3030.002762
ORF1ab/nsp31481D1481YGacTac11B.1.1.3040.002809
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.3050.003861
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp31481D1481NGacAac11B.1.1.3180.000302
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.3280.016949
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.3390.010526
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.3550.015385
ORF1ab/nsp31481D1481YGacTac11B.1.1.3690.000446
ORF1ab/nsp31481D1481delGAC---11B.1.1.370.000193
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.390.00051
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.3970.002252
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.4340.000349
ORF1ab/nsp31481D1481delGAC---11B.1.1.460.004367
ORF1ab/nsp31481D1481delGAC---11B.1.1.4640.001473
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.4860.001577
ORF1ab/nsp31481D1481YGacTac11B.1.1.5190.00004
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.5230.001563
ORF1ab/nsp31481D1481delGAC---11B.1.1.5250.005464
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.580.005376
ORF1ab/nsp31481D1481DgaCgaT11B.1.1.670.004566
ORF1ab/nsp31481D1481VgAcgTc11B.1.1.70.000001
ORF1ab/nsp31481D1481IGAcATc11B.1.1.70.000001
ORF1ab/nsp31481D1481delGAC---11B.1.1.700.000341
ORF1ab/nsp31481D1481EgaCgaA11B.1.1.700.000341
ORF1ab/nsp31481D1481DgaCgaT11B.1.1260.001276
ORF1ab/nsp31481D1481DgaCgaT11B.1.1490.003425
ORF1ab/nsp31481D1481YGacTac11B.1.1570.002985
ORF1ab/nsp31481D1481YGacTac11B.1.160.140.002119
ORF1ab/nsp31481D1481DgaCgaT11B.1.160.160.000929
ORF1ab/nsp31481D1481GgAcgGc11B.1.1770.000013
ORF1ab/nsp31481D1481EgaCgaA11B.1.1770.000013
ORF1ab/nsp31481D1481del2gACg--11B.1.1770.000013
ORF1ab/nsp31481D1481DgaCgaT11B.1.177.160.000664
ORF1ab/nsp31481D1481DgaCgaT11B.1.177.170.000821
ORF1ab/nsp31481D1481NGacAac11B.1.177.200.001517
ORF1ab/nsp31481D1481YGacTac11B.1.177.40.000211
ORF1ab/nsp31481D1481DgaCgaT11B.1.177.430.001477
ORF1ab/nsp31481D1481DgaCgaT11B.1.177.440.000519
ORF1ab/nsp31481D1481HGacCac11B.1.177.440.000519
ORF1ab/nsp31481D1481delGAC---11B.1.177.530.002392
ORF1ab/nsp31481D1481NGacAac11B.1.177.570.000281
ORF1ab/nsp31481D1481delGAC---11B.1.177.60.000977
ORF1ab/nsp31481D1481DgaCgaT11B.1.177.750.001041
ORF1ab/nsp31481D1481DgaCgaT11B.1.177.770.000726
ORF1ab/nsp31481D1481NGacAac11B.1.177.810.000189
ORF1ab/nsp31481D1481EgaCgaA11B.1.177.810.000189
ORF1ab/nsp31481D1481DgaCgaT11B.1.177.820.000477
ORF1ab/nsp31481D1481delGAC---11B.1.177.90.001332
ORF1ab/nsp31481D1481delGAC---11B.1.20.000009
ORF1ab/nsp31481D1481EgaCgaA11B.1.20.000009
ORF1ab/nsp31481D1481VgAcgTc11B.1.20.000009
ORF1ab/nsp31481D1481DgaCgaT11B.1.2140.003663
ORF1ab/nsp31481D1481DgaCgaT11B.1.2180.005155
ORF1ab/nsp31481D1481delGAC---11B.1.2210.000071
ORF1ab/nsp31481D1481GgAcgGc11B.1.2220.001692
ORF1ab/nsp31481D1481DgaCgaT11B.1.2360.002053
ORF1ab/nsp31481D1481NGacAac11B.1.2390.001221
ORF1ab/nsp31481D1481HGacCac11B.1.2430.00007
ORF1ab/nsp31481D1481delGAC---11B.1.2580.000067
ORF1ab/nsp31481D1481DgaCgaT11B.1.258.220.002667
ORF1ab/nsp31481D1481DgaCgaT11B.1.258.240.010753
ORF1ab/nsp31481D1481delGAC---11B.1.2650.001271
ORF1ab/nsp31481D1481DgaCgaT11B.1.3140.007519
ORF1ab/nsp31481D1481DgaCgaT11B.1.3200.001245
ORF1ab/nsp31481D1481AgAcgCc11B.1.3200.001245
ORF1ab/nsp31481D1481VgAcgTc11B.1.3380.008621
ORF1ab/nsp31481D1481EgaCgaA11B.1.3510.00003
ORF1ab/nsp31481D1481HGacCac11B.1.3510.00003
ORF1ab/nsp31481D1481VgAcgTc11B.1.351.30.000876
ORF1ab/nsp31481D1481DgaCgaT11B.1.351.50.0006
ORF1ab/nsp31481D1481DgaCgaT11B.1.36.190.009259
ORF1ab/nsp31481D1481DgaCgaT11B.1.3690.000285
ORF1ab/nsp31481D1481DgaCgaT11B.1.3750.00082
ORF1ab/nsp31481D1481DgaCgaT11B.1.3850.010638
ORF1ab/nsp31481D1481DgaCgaT11B.1.3960.000706
ORF1ab/nsp31481D1481DgaCgaT11B.1.3980.002976
ORF1ab/nsp31481D1481HGacCac11B.1.4000.000429
ORF1ab/nsp31481D1481DgaCgaT11B.1.4090.000781
ORF1ab/nsp31481D1481delGAC---11B.1.416.10.001563
ORF1ab/nsp31481D1481DgaCgaT11B.1.4220.000812
ORF1ab/nsp31481D1481DgaCgaT11B.1.428.30.012821
ORF1ab/nsp31481D1481EgaCgaA11B.1.4290.000024
ORF1ab/nsp31481D1481DgaCgaT11B.1.438.10.000107
ORF1ab/nsp31481D1481DgaCgaT11B.1.4480.002625
ORF1ab/nsp31481D1481VgAcgTc11B.1.466.20.000391
ORF1ab/nsp31481D1481DgaCgaT11B.1.4950.009091
ORF1ab/nsp31481D1481DgaCgaT11B.1.4990.00105
ORF1ab/nsp31481D1481HGacCac11B.1.5250.000113
ORF1ab/nsp31481D1481NGacAac11B.1.5260.000024
ORF1ab/nsp31481D1481delGAC---11B.1.5260.000024
ORF1ab/nsp31481D1481DgaCgaT11B.1.5270.003704
ORF1ab/nsp31481D1481delGAC---11B.1.5330.009615
ORF1ab/nsp31481D1481DgaCgaT11B.1.5400.009709
ORF1ab/nsp31481D1481YGacTac11B.1.5640.000426
ORF1ab/nsp31481D1481DgaCgaT11B.1.575.10.002439
ORF1ab/nsp31481D1481DgaCgaT11B.1.5760.000907
ORF1ab/nsp31481D1481delGAC---11B.1.5770.000687
ORF1ab/nsp31481D1481DgaCgaT11B.1.5820.000491
ORF1ab/nsp31481D1481HGacCac11B.1.5960.000087
ORF1ab/nsp31481D1481GgAcgGc11B.1.5960.000087
ORF1ab/nsp31481D1481AgAcgCc11B.1.5960.000087
ORF1ab/nsp31481D1481HGacCac11B.1.617.20.000004
ORF1ab/nsp31481D1481HGacCac11B.1.6200.000946
ORF1ab/nsp31481D1481EgaCgaA11B.1.6210.000089
ORF1ab/nsp31481D1481delGAC---11B.1.6210.000089
ORF1ab/nsp31481D1481DgaCgaT11B.1.6250.002353
ORF1ab/nsp31481D1481DgaCgaT11B.1.80.001972
ORF1ab/nsp31481D1481YGacTac11B.100.008264
ORF1ab/nsp31481D1481HGacCac11B.600.015873
ORF1ab/nsp31481D1481DgaCgaT11C.36.30.000567
ORF1ab/nsp31481D1481DgaCgaT11C.390.018868
ORF1ab/nsp31481D1481GgACgGT11D.20.000075
ORF1ab/nsp31481D1481YGacTac11D.20.000075
ORF1ab/nsp31481D1481HGacCac11D.20.000075
ORF1ab/nsp31481D1481delGAC---11P.10.000016
ORF1ab/nsp31481D1481IGAcATc11P.10.000016
ORF1ab/nsp31481D1481DgaCgaT11P.1.120.000484
ORF1ab/nsp31481D1481YGacTac11P.1.150.000232
ORF1ab/nsp31481D1481delGAC---11P.1.150.000232
ORF1ab/nsp31481D1481DgaCgaT11P.1.70.000319
ORF1ab/nsp31481D1481DgaCgaT11Q.30.000145
ORF1ab/nsp31481D1481DgaCgaT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.