CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1478

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31478D1478DD2296DsyngaTgaC2312231217151-7153
ORF1ab/nsp31478D1478delD2296deldelGAT---10910917151-7153
ORF1ab/nsp31478D1478YD2296YnonsynGatTat28260.9285717151-7153
ORF1ab/nsp31478D1478YD2296YnonsynGaTTaC2820.07142867151-7153
ORF1ab/nsp31478D1478ED2296EnonsyngaTgaG26130.57151-7153
ORF1ab/nsp31478D1478ED2296EnonsyngaTgaA26130.57151-7153
ORF1ab/nsp31478D1478VD2296VnonsyngAtgTt1290.757151-7153
ORF1ab/nsp31478D1478VD2296VnonsyngATgTC1210.08333337151-7153
ORF1ab/nsp31478D1478VD2296VnonsyngATgTG1210.08333337151-7153
ORF1ab/nsp31478D1478VD2296VnonsyngATgTA1210.08333337151-7153
ORF1ab/nsp31478D1478ND2296NnonsynGatAat9917151-7153
ORF1ab/nsp31478D1478AD2296AnonsyngAtgCt7717151-7153
ORF1ab/nsp31478D1478GD2296GnonsyngAtgGt7717151-7153
ORF1ab/nsp31478D1478HD2296HnonsynGatCat5517151-7153
ORF1ab/nsp31478D1478del1D2296del1delgaTga-530.67151-7153
ORF1ab/nsp31478D1478del1D2296del1delGAt-Gt510.27151-7153
ORF1ab/nsp31478D1478del1D2296del1delGAT-NN510.27151-7153
ORF1ab/nsp31478D1478XD2296XnonsynGaTTaG2217151-7153
ORF1ab/nsp31478D1478FD2296FnonsynGAtTTt210.57151-7153
ORF1ab/nsp31478D1478FD2296FnonsynGATTTC210.57151-7153
ORF1ab/nsp31478D1478CD2296CnonsynGAtTGt210.57151-7153
ORF1ab/nsp31478D1478CD2296CnonsynGATTGC210.57151-7153
ORF1ab/nsp31478D1478SD2296SnonsynGATAGC210.57151-7153
ORF1ab/nsp31478D1478SD2296SnonsynGAtTCt210.57151-7153
ORF1ab/nsp31478D1478LD2296LnonsynGATTTG1117151-7153
ORF1ab/nsp31478D1478del2D2296del2delGAt--t1117151-7153
ORF1ab/nsp31478D1478QD2296QnonsynGaTCaG1117151-7153

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31478D1478DgaTgaC23122312All0.000442
ORF1ab/nsp31478D1478DgaTgaC20442044AE.80.999511
ORF1ab/nsp31478D1478delGAT---109109All0.000021
ORF1ab/nsp31478D1478DgaTgaC5656B.1.1.70.00005
ORF1ab/nsp31478D1478DgaTgaC5454B.1.5210.268657
ORF1ab/nsp31478D1478DgaTgaC4444B.1.177.120.006675
ORF1ab/nsp31478D1478DgaTgaC3131AY.40.000048
ORF1ab/nsp31478D1478YGatTat2628All0.000005
ORF1ab/nsp31478D1478YGaTTaC228All0
ORF1ab/nsp31478D1478delGAT---2828B.1.1.70.000025
ORF1ab/nsp31478D1478EgaTgaA1326All0.000002
ORF1ab/nsp31478D1478EgaTgaG1326All0.000002
ORF1ab/nsp31478D1478VgAtgTt912All0.000002
ORF1ab/nsp31478D1478VgATgTA112All0
ORF1ab/nsp31478D1478VgATgTC112All0
ORF1ab/nsp31478D1478VgATgTG112All0
ORF1ab/nsp31478D1478DgaTgaC1111B.1.5380.08871
ORF1ab/nsp31478D1478NGatAat99All0.000002
ORF1ab/nsp31478D1478DgaTgaC99B.1.10.000163
ORF1ab/nsp31478D1478EgaTgaA79B.1.1.70.000006
ORF1ab/nsp31478D1478EgaTgaG29B.1.1.70.000002
ORF1ab/nsp31478D1478DgaTgaC88B.10.000073
ORF1ab/nsp31478D1478delGAT---88B.1.1770.000105
ORF1ab/nsp31478D1478GgAtgGt77All0.000001
ORF1ab/nsp31478D1478AgAtgCt77All0.000001
ORF1ab/nsp31478D1478delGAT---77B.10.000064
ORF1ab/nsp31478D1478HGatCat55All0.000001
ORF1ab/nsp31478D1478del1gaTga-35All0.000001
ORF1ab/nsp31478D1478del1GAT-NN15All0
ORF1ab/nsp31478D1478del1GAt-Gt15All0
ORF1ab/nsp31478D1478DgaTgaC55B.1.617.20.000019
ORF1ab/nsp31478D1478delGAT---440.222222
ORF1ab/nsp31478D1478delGAT---44AY.40.000006
ORF1ab/nsp31478D1478YGatTat44B.10.000037
ORF1ab/nsp31478D1478delGAT---44B.1.1.2180.030769
ORF1ab/nsp31478D1478DgaTgaC44B.1.1.3110.001433
ORF1ab/nsp31478D1478YGatTat230.111111
ORF1ab/nsp31478D1478YGaTTaC130.055556
ORF1ab/nsp31478D1478VgATgTG130.055556
ORF1ab/nsp31478D1478VgAtgTt130.055556
ORF1ab/nsp31478D1478VgATgTC130.055556
ORF1ab/nsp31478D1478DgaTgaC33AY.290.000047
ORF1ab/nsp31478D1478NGatAat33AY.40.000005
ORF1ab/nsp31478D1478delGAT---33B.1.10.000054
ORF1ab/nsp31478D1478DgaTgaC33B.1.1770.00004
ORF1ab/nsp31478D1478delGAT---33B.1.617.20.000011
ORF1ab/nsp31478D1478XGaTTaG220.111111
ORF1ab/nsp31478D1478EgaTgaG220.111111
ORF1ab/nsp31478D1478FGATTTC120.055556
ORF1ab/nsp31478D1478FGAtTTt120.055556
ORF1ab/nsp31478D1478XGaTTaG22All0
ORF1ab/nsp31478D1478SGAtTCt12All0
ORF1ab/nsp31478D1478SGATAGC12All0
ORF1ab/nsp31478D1478CGATTGC12All0
ORF1ab/nsp31478D1478CGAtTGt12All0
ORF1ab/nsp31478D1478FGAtTTt12All0
ORF1ab/nsp31478D1478FGATTTC12All0
ORF1ab/nsp31478D1478DgaTgaC22AY.1020.000053
ORF1ab/nsp31478D1478DgaTgaC22AY.1030.000012
ORF1ab/nsp31478D1478EgaTgaA22AY.260.000057
ORF1ab/nsp31478D1478YGatTat22AY.40.000003
ORF1ab/nsp31478D1478delGAT---22AY.4.50.000215
ORF1ab/nsp31478D1478EgaTgaG22AY.430.000009
ORF1ab/nsp31478D1478delGAT---22AY.430.000009
ORF1ab/nsp31478D1478DgaTgaC22AY.430.000009
ORF1ab/nsp31478D1478DgaTgaC22AY.440.000012
ORF1ab/nsp31478D1478EgaTgaG22AY.450.000243
ORF1ab/nsp31478D1478EgaTgaG22AY.470.000062
ORF1ab/nsp31478D1478NGatAat22AY.50.000041
ORF1ab/nsp31478D1478AgAtgCt22B.10.000018
ORF1ab/nsp31478D1478VgAtgTt22B.10.000018
ORF1ab/nsp31478D1478DgaTgaC22B.1.1.2310.006192
ORF1ab/nsp31478D1478DgaTgaC22B.1.1.2690.002706
ORF1ab/nsp31478D1478CGATTGC12B.1.1.280.000311
ORF1ab/nsp31478D1478CGAtTGt12B.1.1.280.000311
ORF1ab/nsp31478D1478YGatTat12B.1.1.280.000311
ORF1ab/nsp31478D1478YGaTTaC12B.1.1.280.000311
ORF1ab/nsp31478D1478YGatTat22B.1.1.70.000002
ORF1ab/nsp31478D1478GgAtgGt22B.1.1.70.000002
ORF1ab/nsp31478D1478NGatAat22B.1.1.70.000002
ORF1ab/nsp31478D1478VgAtgTt22B.1.1.70.000002
ORF1ab/nsp31478D1478DgaTgaC22B.1.1600.000062
ORF1ab/nsp31478D1478delGAT---22B.1.177.620.002384
ORF1ab/nsp31478D1478DgaTgaC22B.1.3510.000059
ORF1ab/nsp31478D1478delGAT---22B.1.4110.007407
ORF1ab/nsp31478D1478YGatTat22B.1.466.20.000782
ORF1ab/nsp31478D1478YGatTat22B.1.5960.000174
ORF1ab/nsp31478D1478delGAT---22B.1.5960.000174
ORF1ab/nsp31478D1478delGAT---22C.350.001548
ORF1ab/nsp31478D1478VgATgTA12P.1.10.000318
ORF1ab/nsp31478D1478VgAtgTt12P.1.10.000318
ORF1ab/nsp31478D1478HGatCat110.055556
ORF1ab/nsp31478D1478DgaTgaC110.055556
ORF1ab/nsp31478D1478GgAtgGt110.055556
ORF1ab/nsp31478D1478QGaTCaG110.055556
ORF1ab/nsp31478D1478LGATTTG110.055556
ORF1ab/nsp31478D1478VgAtgTt11A.50.001923
ORF1ab/nsp31478D1478delGAT---11AD.20.000219
ORF1ab/nsp31478D1478QGaTCaG11All0
ORF1ab/nsp31478D1478del2GAt--t11All0
ORF1ab/nsp31478D1478LGATTTG11All0
ORF1ab/nsp31478D1478delGAT---11AY.1010.00049
ORF1ab/nsp31478D1478delGAT---11AY.1030.000006
ORF1ab/nsp31478D1478EgaTgaG11AY.1030.000006
ORF1ab/nsp31478D1478delGAT---11AY.1080.001103
ORF1ab/nsp31478D1478HGatCat11AY.1170.000085
ORF1ab/nsp31478D1478YGatTat11AY.1180.000063
ORF1ab/nsp31478D1478delGAT---11AY.1190.000035
ORF1ab/nsp31478D1478DgaTgaC11AY.1190.000035
ORF1ab/nsp31478D1478delGAT---11AY.1200.000037
ORF1ab/nsp31478D1478del1gaTga-11AY.120.10.000321
ORF1ab/nsp31478D1478DgaTgaC11AY.190.00114
ORF1ab/nsp31478D1478YGatTat11AY.240.000431
ORF1ab/nsp31478D1478HGatCat11AY.250.000006
ORF1ab/nsp31478D1478DgaTgaC11AY.250.000006
ORF1ab/nsp31478D1478delGAT---11AY.250.000006
ORF1ab/nsp31478D1478GgAtgGt11AY.250.000006
ORF1ab/nsp31478D1478YGatTat11AY.250.000006
ORF1ab/nsp31478D1478delGAT---11AY.30.00001
ORF1ab/nsp31478D1478delGAT---11AY.360.000148
ORF1ab/nsp31478D1478YGatTat11AY.370.000316
ORF1ab/nsp31478D1478AgAtgCt11AY.39.10.00004
ORF1ab/nsp31478D1478DgaTgaC11AY.4.20.000022
ORF1ab/nsp31478D1478delGAT---11AY.4.30.000842
ORF1ab/nsp31478D1478SGAtTCt11AY.430.000004
ORF1ab/nsp31478D1478del1GAt-Gt11AY.440.000006
ORF1ab/nsp31478D1478DgaTgaC11AY.470.000031
ORF1ab/nsp31478D1478DgaTgaC11AY.50.000021
ORF1ab/nsp31478D1478DgaTgaC11AY.5.10.003759
ORF1ab/nsp31478D1478delGAT---11AY.590.00053
ORF1ab/nsp31478D1478delGAT---11AY.600.000938
ORF1ab/nsp31478D1478delGAT---11AY.660.00107
ORF1ab/nsp31478D1478delGAT---11AY.670.000464
ORF1ab/nsp31478D1478DgaTgaC11AY.740.000116
ORF1ab/nsp31478D1478delGAT---11AY.840.000437
ORF1ab/nsp31478D1478DgaTgaC11AY.880.000884
ORF1ab/nsp31478D1478delGAT---11AY.90.000068
ORF1ab/nsp31478D1478YGatTat11AY.90.000068
ORF1ab/nsp31478D1478DgaTgaC11AY.960.002075
ORF1ab/nsp31478D1478delGAT---11AY.990.001049
ORF1ab/nsp31478D1478DgaTgaC11B0.000128
ORF1ab/nsp31478D1478GgAtgGt11B.10.000009
ORF1ab/nsp31478D1478EgaTgaA11B.10.000009
ORF1ab/nsp31478D1478AgAtgCt11B.1.1.3180.000302
ORF1ab/nsp31478D1478delGAT---11B.1.1.370.000193
ORF1ab/nsp31478D1478VgAtgTt11B.1.1.3710.010417
ORF1ab/nsp31478D1478NGatAat11B.1.1.4110.014706
ORF1ab/nsp31478D1478delGAT---11B.1.1.460.004367
ORF1ab/nsp31478D1478delGAT---11B.1.1.4640.001473
ORF1ab/nsp31478D1478delGAT---11B.1.1.5250.005464
ORF1ab/nsp31478D1478del1GAT-NN11B.1.1.70.000001
ORF1ab/nsp31478D1478del2GAt--t11B.1.1.70.000001
ORF1ab/nsp31478D1478AgAtgCt11B.1.1.70.000001
ORF1ab/nsp31478D1478delGAT---11B.1.1.700.000341
ORF1ab/nsp31478D1478DgaTgaC11B.1.1280.000635
ORF1ab/nsp31478D1478DgaTgaC11B.1.160.140.002119
ORF1ab/nsp31478D1478YGatTat11B.1.1770.000013
ORF1ab/nsp31478D1478YGatTat11B.1.177.50.001242
ORF1ab/nsp31478D1478delGAT---11B.1.177.530.002392
ORF1ab/nsp31478D1478delGAT---11B.1.177.60.000977
ORF1ab/nsp31478D1478DgaTgaC11B.1.177.730.000566
ORF1ab/nsp31478D1478YGatTat11B.1.177.770.000726
ORF1ab/nsp31478D1478delGAT---11B.1.177.90.001332
ORF1ab/nsp31478D1478delGAT---11B.1.20.000009
ORF1ab/nsp31478D1478YGatTat11B.1.20.000009
ORF1ab/nsp31478D1478NGatAat11B.1.20.000009
ORF1ab/nsp31478D1478EgaTgaA11B.1.20.000009
ORF1ab/nsp31478D1478del1gaTga-11B.1.20.000009
ORF1ab/nsp31478D1478AgAtgCt11B.1.20.000009
ORF1ab/nsp31478D1478delGAT---11B.1.2210.000071
ORF1ab/nsp31478D1478GgAtgGt11B.1.2220.001692
ORF1ab/nsp31478D1478delGAT---11B.1.2580.000067
ORF1ab/nsp31478D1478DgaTgaC11B.1.2580.000067
ORF1ab/nsp31478D1478delGAT---11B.1.2650.001271
ORF1ab/nsp31478D1478DgaTgaC11B.1.2790.000514
ORF1ab/nsp31478D1478del1gaTga-11B.1.360.000146
ORF1ab/nsp31478D1478DgaTgaC11B.1.36.100.004785
ORF1ab/nsp31478D1478DgaTgaC11B.1.3670.000792
ORF1ab/nsp31478D1478delGAT---11B.1.416.10.001563
ORF1ab/nsp31478D1478YGatTat11B.1.4270.00005
ORF1ab/nsp31478D1478GgAtgGt11B.1.4270.00005
ORF1ab/nsp31478D1478YGatTat11B.1.4290.000024
ORF1ab/nsp31478D1478DgaTgaC11B.1.4290.000024
ORF1ab/nsp31478D1478delGAT---11B.1.5260.000024
ORF1ab/nsp31478D1478delGAT---11B.1.5330.009615
ORF1ab/nsp31478D1478delGAT---11B.1.5770.000687
ORF1ab/nsp31478D1478EgaTgaG11B.1.617.10.000129
ORF1ab/nsp31478D1478VgAtgTt11B.1.617.20.000004
ORF1ab/nsp31478D1478SGATAGC11B.1.617.20.000004
ORF1ab/nsp31478D1478EgaTgaG11B.1.617.20.000004
ORF1ab/nsp31478D1478AgAtgCt11B.1.619.10.000641
ORF1ab/nsp31478D1478DgaTgaC11B.1.619.10.000641
ORF1ab/nsp31478D1478delGAT---11B.1.6210.000089
ORF1ab/nsp31478D1478EgaTgaA11D.20.000075
ORF1ab/nsp31478D1478HGatCat11D.20.000075
ORF1ab/nsp31478D1478HGatCat11P.10.000016
ORF1ab/nsp31478D1478delGAT---11P.10.000016
ORF1ab/nsp31478D1478DgaTgaC11P.10.000016
ORF1ab/nsp31478D1478EgaTgaA11P.1.10.000318
ORF1ab/nsp31478D1478delGAT---11P.1.150.000232
ORF1ab/nsp31478D1478DgaTgaC11P.20.000187
ORF1ab/nsp31478D1478DgaTgaC11Q.80.000165