CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1475

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31475S1475GS2293GnonsynAgtGgt3230323017142-7144
ORF1ab/nsp31475S1475NS2293NnonsynaGtaAt53953917142-7144
ORF1ab/nsp31475S1475IS2293InonsynaGtaTt43543517142-7144
ORF1ab/nsp31475S1475delS2293deldelAGT---12212217142-7144
ORF1ab/nsp31475S1475SS2293SsynagTagC757517142-7144
ORF1ab/nsp31475S1475CS2293CnonsynAgtTgt383817142-7144
ORF1ab/nsp31475S1475RS2293RnonsynagTagA31180.5806457142-7144
ORF1ab/nsp31475S1475RS2293RnonsynAgtCgt31110.3548397142-7144
ORF1ab/nsp31475S1475RS2293RnonsynagTagG3120.06451617142-7144
ORF1ab/nsp31475S1475TS2293TnonsynaGtaCt1070.77142-7144
ORF1ab/nsp31475S1475TS2293TnonsynaGTaCA1020.27142-7144
ORF1ab/nsp31475S1475TS2293TnonsynaGTaCG1010.17142-7144
ORF1ab/nsp31475S1475HS2293HnonsynAGtCAt3317142-7144
ORF1ab/nsp31475S1475del1S2293del1delAgt-gt310.3333337142-7144
ORF1ab/nsp31475S1475del1S2293del1delAGT-NN310.3333337142-7144
ORF1ab/nsp31475S1475del1S2293del1delaGta-t310.3333337142-7144
ORF1ab/nsp31475S1475LS2293LnonsynAGtCTt2217142-7144
ORF1ab/nsp31475S1475VS2293VnonsynAGtGTt2217142-7144
ORF1ab/nsp31475S1475FS2293FnonsynAGtTTt1117142-7144
ORF1ab/nsp31475S1475del2S2293del2delAGt--t1117142-7144
ORF1ab/nsp31475S1475DS2293DnonsynAGtGAt1117142-7144

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31475S1475GAgtGgt32303230All0.000618
ORF1ab/nsp31475S1475GAgtGgt26882688B.1.6280.947146
ORF1ab/nsp31475S1475NaGtaAt539539All0.000103
ORF1ab/nsp31475S1475IaGtaTt435435All0.000083
ORF1ab/nsp31475S1475GAgtGgt278278B.1.6340.952055
ORF1ab/nsp31475S1475NaGtaAt225225B.1.1.70.000201
ORF1ab/nsp31475S1475IaGtaTt159159B.1.617.20.000599
ORF1ab/nsp31475S1475IaGtaTt123123AY.1000.005659
ORF1ab/nsp31475S1475delAGT---122122All0.000023
ORF1ab/nsp31475S1475IaGtaTt8686B.1.6210.007613
ORF1ab/nsp31475S1475GAgtGgt8080B.10.000733
ORF1ab/nsp31475S1475SagTagC7575All0.000014
ORF1ab/nsp31475S1475GAgtGgt7474AY.440.00045
ORF1ab/nsp31475S1475NaGtaAt5858B.1.5260.001363
ORF1ab/nsp31475S1475CAgtTgt3838All0.000007
ORF1ab/nsp31475S1475delAGT---3535B.1.1.70.000031
ORF1ab/nsp31475S1475RagTagA1831All0.000003
ORF1ab/nsp31475S1475RAgtCgt1131All0.000002
ORF1ab/nsp31475S1475RagTagG231All0
ORF1ab/nsp31475S1475GAgtGgt2929B.1.1.70.000026
ORF1ab/nsp31475S1475NaGtaAt2626P.10.00041
ORF1ab/nsp31475S1475NaGtaAt2424B.1.20.000211
ORF1ab/nsp31475S1475NaGtaAt2323B.1.617.20.000087
ORF1ab/nsp31475S1475NaGtaAt1515B.1.1.5190.000596
ORF1ab/nsp31475S1475NaGtaAt1515B.1.6370.001096
ORF1ab/nsp31475S1475CAgtTgt1414AY.60.000576
ORF1ab/nsp31475S1475RagTagA1212AY.20.004274
ORF1ab/nsp31475S1475GAgtGgt1212AY.39.10.000475
ORF1ab/nsp31475S1475SagTagC1212B.1.1.70.000011
ORF1ab/nsp31475S1475NaGtaAt1111B.1.4290.000259
ORF1ab/nsp31475S1475TaGtaCt710All0.000001
ORF1ab/nsp31475S1475TaGTaCA210All0
ORF1ab/nsp31475S1475TaGTaCG110All0
ORF1ab/nsp31475S1475NaGtaAt99AY.1000.000414
ORF1ab/nsp31475S1475NaGtaAt99AY.1160.002581
ORF1ab/nsp31475S1475RAgtCgt79B.1.1.70.000006
ORF1ab/nsp31475S1475RagTagA29B.1.1.70.000002
ORF1ab/nsp31475S1475delAGT---99B.1.1770.000119
ORF1ab/nsp31475S1475CAgtTgt88AY.40.000012
ORF1ab/nsp31475S1475NaGtaAt88AY.440.000049
ORF1ab/nsp31475S1475GAgtGgt88B.1.6370.000585
ORF1ab/nsp31475S1475IaGtaTt77AY.250.000042
ORF1ab/nsp31475S1475IaGtaTt77AY.900.004791
ORF1ab/nsp31475S1475delAGT---77B.10.000064
ORF1ab/nsp31475S1475SagTagC77B.1.5260.000165
ORF1ab/nsp31475S1475SagTagC77B.1.617.20.000026
ORF1ab/nsp31475S1475GAgtGgt77P.1.120.003388
ORF1ab/nsp31475S1475GAgtGgt66AY.1020.000159
ORF1ab/nsp31475S1475SagTagC66AY.270.000388
ORF1ab/nsp31475S1475NaGtaAt66B.10.000055
ORF1ab/nsp31475S1475SagTagC66B.1.177.40.001266
ORF1ab/nsp31475S1475NaGtaAt66B.1.3510.000178
ORF1ab/nsp31475S1475GAgtGgt66B.1.617.20.000023
ORF1ab/nsp31475S1475NaGtaAt66R.10.00054
ORF1ab/nsp31475S1475NaGtaAt55AY.40.000008
ORF1ab/nsp31475S1475delAGT---55AY.430.000022
ORF1ab/nsp31475S1475NaGtaAt55B.1.2400.001078
ORF1ab/nsp31475S1475CAgtTgt55B.1.617.20.000019
ORF1ab/nsp31475S1475SagTagC55B.1.621.10.002529
ORF1ab/nsp31475S1475delAGT---440.222222
ORF1ab/nsp31475S1475NaGtaAt44AY.250.000024
ORF1ab/nsp31475S1475NaGtaAt44AY.260.000113
ORF1ab/nsp31475S1475delAGT---44AY.40.000006
ORF1ab/nsp31475S1475IaGtaTt44AY.430.000018
ORF1ab/nsp31475S1475IaGtaTt44B.1.10.000073
ORF1ab/nsp31475S1475delAGT---44B.1.10.000073
ORF1ab/nsp31475S1475delAGT---44B.1.1.2180.030769
ORF1ab/nsp31475S1475NaGtaAt44B.1.3110.001098
ORF1ab/nsp31475S1475NaGtaAt44B.1.5750.001214
ORF1ab/nsp31475S1475NaGtaAt44Q.30.00058
ORF1ab/nsp31475S1475IaGtaTt330.166667
ORF1ab/nsp31475S1475HAGtCAt33All0.000001
ORF1ab/nsp31475S1475del1aGta-t13All0
ORF1ab/nsp31475S1475del1AGT-NN13All0
ORF1ab/nsp31475S1475del1Agt-gt13All0
ORF1ab/nsp31475S1475NaGtaAt33AY.1030.000019
ORF1ab/nsp31475S1475SagTagC33AY.40.000005
ORF1ab/nsp31475S1475GAgtGgt33AY.40.000005
ORF1ab/nsp31475S1475NaGtaAt33AY.430.000013
ORF1ab/nsp31475S1475IaGtaTt33AY.440.000018
ORF1ab/nsp31475S1475SagTagC33AY.470.000093
ORF1ab/nsp31475S1475GAgtGgt33B.1.10.000054
ORF1ab/nsp31475S1475NaGtaAt33B.1.10.000054
ORF1ab/nsp31475S1475IaGtaTt33B.1.1.70.000003
ORF1ab/nsp31475S1475NaGtaAt33B.1.1770.00004
ORF1ab/nsp31475S1475HAGtCAt33B.1.2580.0002
ORF1ab/nsp31475S1475NaGtaAt33B.1.4270.000151
ORF1ab/nsp31475S1475GAgtGgt33B.1.5960.000261
ORF1ab/nsp31475S1475delAGT---33B.1.617.20.000011
ORF1ab/nsp31475S1475GAgtGgt33B.1.6270.006061
ORF1ab/nsp31475S1475NaGtaAt33P.1.70.000958
ORF1ab/nsp31475S1475SagTagC33R.10.00027
ORF1ab/nsp31475S1475LAGtCTt22All0
ORF1ab/nsp31475S1475VAGtGTt22All0
ORF1ab/nsp31475S1475IaGtaTt22AY.1030.000012
ORF1ab/nsp31475S1475IaGtaTt22AY.1180.000125
ORF1ab/nsp31475S1475NaGtaAt22AY.160.000759
ORF1ab/nsp31475S1475NaGtaAt22AY.200.000078
ORF1ab/nsp31475S1475IaGtaTt22AY.330.000134
ORF1ab/nsp31475S1475SagTagC22AY.330.000134
ORF1ab/nsp31475S1475TaGtaCt22AY.40.000003
ORF1ab/nsp31475S1475delAGT---22AY.4.50.000215
ORF1ab/nsp31475S1475SagTagC22AY.430.000009
ORF1ab/nsp31475S1475GAgtGgt22AY.430.000009
ORF1ab/nsp31475S1475VAGtGTt22AY.440.000012
ORF1ab/nsp31475S1475IaGtaTt22AY.470.000062
ORF1ab/nsp31475S1475SagTagC22AY.480.00093
ORF1ab/nsp31475S1475SagTagC22AY.50.000041
ORF1ab/nsp31475S1475NaGtaAt22AY.60.000082
ORF1ab/nsp31475S1475NaGtaAt22AY.990.002099
ORF1ab/nsp31475S1475GAgtGgt22AY.99.20.000184
ORF1ab/nsp31475S1475IaGtaTt22B.10.000018
ORF1ab/nsp31475S1475SagTagC22B.1.1.3060.000877
ORF1ab/nsp31475S1475NaGtaAt22B.1.1.3180.000604
ORF1ab/nsp31475S1475CAgtTgt22B.1.1.70.000002
ORF1ab/nsp31475S1475NaGtaAt22B.1.1110.00235
ORF1ab/nsp31475S1475IaGtaTt22B.1.1770.000026
ORF1ab/nsp31475S1475GAgtGgt22B.1.1770.000026
ORF1ab/nsp31475S1475delAGT---22B.1.177.620.002384
ORF1ab/nsp31475S1475NaGtaAt22B.1.177.810.000379
ORF1ab/nsp31475S1475IaGtaTt22B.1.20.000018
ORF1ab/nsp31475S1475SagTagC22B.1.20.000018
ORF1ab/nsp31475S1475NaGtaAt22B.1.5250.000226
ORF1ab/nsp31475S1475delAGT---22B.1.5960.000174
ORF1ab/nsp31475S1475delAGT---22B.1.6210.000177
ORF1ab/nsp31475S1475NaGtaAt22B.1.6210.000177
ORF1ab/nsp31475S1475CAgtTgt22B.1.6370.000146
ORF1ab/nsp31475S1475NaGtaAt22C.370.000232
ORF1ab/nsp31475S1475IaGtaTt22P.1.10.10.01626
ORF1ab/nsp31475S1475NaGtaAt22P.1.120.000968
ORF1ab/nsp31475S1475NaGtaAt22P.1.130.001797
ORF1ab/nsp31475S1475NaGtaAt22P.20.000373
ORF1ab/nsp31475S1475FAGtTTt110.055556
ORF1ab/nsp31475S1475RAgtCgt110.055556
ORF1ab/nsp31475S1475CAgtTgt110.055556
ORF1ab/nsp31475S1475LAGtCTt110.055556
ORF1ab/nsp31475S1475delAGT---11AD.20.000219
ORF1ab/nsp31475S1475DAGtGAt11All0
ORF1ab/nsp31475S1475FAGtTTt11All0
ORF1ab/nsp31475S1475del2AGt--t11All0
ORF1ab/nsp31475S1475NaGtaAt11AY.100.00053
ORF1ab/nsp31475S1475delAGT---11AY.1010.00049
ORF1ab/nsp31475S1475IaGtaTt11AY.1020.000027
ORF1ab/nsp31475S1475CAgtTgt11AY.1030.000006
ORF1ab/nsp31475S1475delAGT---11AY.1030.000006
ORF1ab/nsp31475S1475GAgtGgt11AY.1030.000006
ORF1ab/nsp31475S1475delAGT---11AY.1080.001103
ORF1ab/nsp31475S1475IaGtaTt11AY.1090.00074
ORF1ab/nsp31475S1475IaGtaTt11AY.1100.000113
ORF1ab/nsp31475S1475IaGtaTt11AY.1170.000085
ORF1ab/nsp31475S1475NaGtaAt11AY.1180.000063
ORF1ab/nsp31475S1475SagTagC11AY.1190.000035
ORF1ab/nsp31475S1475delAGT---11AY.1190.000035
ORF1ab/nsp31475S1475delAGT---11AY.1200.000037
ORF1ab/nsp31475S1475SagTagC11AY.1200.000037
ORF1ab/nsp31475S1475RagTagG11AY.1200.000037
ORF1ab/nsp31475S1475IaGtaTt11AY.1210.000135
ORF1ab/nsp31475S1475CAgtTgt11AY.130.000161
ORF1ab/nsp31475S1475NaGtaAt11AY.20.000356
ORF1ab/nsp31475S1475IaGtaTt11AY.230.00007
ORF1ab/nsp31475S1475SagTagC11AY.250.000006
ORF1ab/nsp31475S1475delAGT---11AY.250.000006
ORF1ab/nsp31475S1475CAgtTgt11AY.250.000006
ORF1ab/nsp31475S1475GAgtGgt11AY.290.000016
ORF1ab/nsp31475S1475NaGtaAt11AY.30.00001
ORF1ab/nsp31475S1475delAGT---11AY.30.00001
ORF1ab/nsp31475S1475SagTagC11AY.30.00001
ORF1ab/nsp31475S1475IaGtaTt11AY.320.000532
ORF1ab/nsp31475S1475IaGtaTt11AY.340.000097
ORF1ab/nsp31475S1475delAGT---11AY.360.000148
ORF1ab/nsp31475S1475IaGtaTt11AY.370.000316
ORF1ab/nsp31475S1475IaGtaTt11AY.390.000025
ORF1ab/nsp31475S1475NaGtaAt11AY.390.000025
ORF1ab/nsp31475S1475IaGtaTt11AY.40.000002
ORF1ab/nsp31475S1475NaGtaAt11AY.4.20.000022
ORF1ab/nsp31475S1475delAGT---11AY.4.30.000842
ORF1ab/nsp31475S1475RAgtCgt11AY.430.000004
ORF1ab/nsp31475S1475delAGT---11AY.440.000006
ORF1ab/nsp31475S1475GAgtGgt11AY.46.40.000165
ORF1ab/nsp31475S1475NaGtaAt11AY.470.000031
ORF1ab/nsp31475S1475SagTagC11AY.530.000288
ORF1ab/nsp31475S1475GAgtGgt11AY.540.000095
ORF1ab/nsp31475S1475delAGT---11AY.590.00053
ORF1ab/nsp31475S1475SagTagC11AY.60.000041
ORF1ab/nsp31475S1475delAGT---11AY.600.000938
ORF1ab/nsp31475S1475RagTagA11AY.610.000105
ORF1ab/nsp31475S1475delAGT---11AY.660.00107
ORF1ab/nsp31475S1475delAGT---11AY.670.000464
ORF1ab/nsp31475S1475GAgtGgt11AY.750.000056
ORF1ab/nsp31475S1475GAgtGgt11AY.75.10.00018
ORF1ab/nsp31475S1475IaGtaTt11AY.800.001129
ORF1ab/nsp31475S1475NaGtaAt11AY.820.001357
ORF1ab/nsp31475S1475delAGT---11AY.840.000437
ORF1ab/nsp31475S1475delAGT---11AY.90.000068
ORF1ab/nsp31475S1475TaGtaCt11AY.9.20.000037
ORF1ab/nsp31475S1475IaGtaTt11AY.9.20.000037
ORF1ab/nsp31475S1475delAGT---11AY.9.20.000037
ORF1ab/nsp31475S1475GAgtGgt11AY.920.000287
ORF1ab/nsp31475S1475GAgtGgt11AY.960.002075
ORF1ab/nsp31475S1475GAgtGgt11AY.98.10.000048
ORF1ab/nsp31475S1475delAGT---11AY.990.001049
ORF1ab/nsp31475S1475RagTagA11B0.000128
ORF1ab/nsp31475S1475RagTagG11B.1.10.000018
ORF1ab/nsp31475S1475IaGtaTt11B.1.1.10.000327
ORF1ab/nsp31475S1475GAgtGgt11B.1.1.1170.009709
ORF1ab/nsp31475S1475NaGtaAt11B.1.1.1270.0625
ORF1ab/nsp31475S1475TaGTaCA11B.1.1.1530.001095
ORF1ab/nsp31475S1475IaGtaTt11B.1.1.250.000569
ORF1ab/nsp31475S1475NaGtaAt11B.1.1.250.000569
ORF1ab/nsp31475S1475SagTagC11B.1.1.280.000311
ORF1ab/nsp31475S1475IaGtaTt11B.1.1.3060.000438
ORF1ab/nsp31475S1475delAGT---11B.1.1.370.000193
ORF1ab/nsp31475S1475CAgtTgt11B.1.1.4160.000905
ORF1ab/nsp31475S1475delAGT---11B.1.1.460.004367
ORF1ab/nsp31475S1475delAGT---11B.1.1.4640.001473
ORF1ab/nsp31475S1475IaGtaTt11B.1.1.4810.071429
ORF1ab/nsp31475S1475GAgtGgt11B.1.1.5190.00004
ORF1ab/nsp31475S1475delAGT---11B.1.1.5250.005464
ORF1ab/nsp31475S1475TaGtaCt11B.1.1.70.000001
ORF1ab/nsp31475S1475del2AGt--t11B.1.1.70.000001
ORF1ab/nsp31475S1475del1aGta-t11B.1.1.70.000001
ORF1ab/nsp31475S1475delAGT---11B.1.1.700.000341
ORF1ab/nsp31475S1475GAgtGgt11B.1.1600.000031
ORF1ab/nsp31475S1475RAgtCgt11B.1.160.140.002119
ORF1ab/nsp31475S1475SagTagC11B.1.177.440.000519
ORF1ab/nsp31475S1475delAGT---11B.1.177.530.002392
ORF1ab/nsp31475S1475delAGT---11B.1.177.60.000977
ORF1ab/nsp31475S1475GAgtGgt11B.1.177.730.000566
ORF1ab/nsp31475S1475delAGT---11B.1.177.90.001332
ORF1ab/nsp31475S1475CAgtTgt11B.1.20.000009
ORF1ab/nsp31475S1475TaGtaCt11B.1.20.000009
ORF1ab/nsp31475S1475delAGT---11B.1.20.000009
ORF1ab/nsp31475S1475del1AGT-NN11B.1.20.000009
ORF1ab/nsp31475S1475delAGT---11B.1.2210.000071
ORF1ab/nsp31475S1475NaGtaAt11B.1.2210.000071
ORF1ab/nsp31475S1475GAgtGgt11B.1.2210.000071
ORF1ab/nsp31475S1475NaGtaAt11B.1.2340.000132
ORF1ab/nsp31475S1475IaGtaTt11B.1.2410.000812
ORF1ab/nsp31475S1475GAgtGgt11B.1.2410.000812
ORF1ab/nsp31475S1475NaGtaAt11B.1.2430.00007
ORF1ab/nsp31475S1475GAgtGgt11B.1.2470.014925
ORF1ab/nsp31475S1475NaGtaAt11B.1.2580.000067
ORF1ab/nsp31475S1475delAGT---11B.1.2580.000067
ORF1ab/nsp31475S1475delAGT---11B.1.2650.001271
ORF1ab/nsp31475S1475GAgtGgt11B.1.3510.00003
ORF1ab/nsp31475S1475RagTagA11B.1.3620.001541
ORF1ab/nsp31475S1475GAgtGgt11B.1.3770.004566
ORF1ab/nsp31475S1475delAGT---11B.1.4110.003704
ORF1ab/nsp31475S1475delAGT---11B.1.416.10.001563
ORF1ab/nsp31475S1475IaGtaTt11B.1.4280.00102
ORF1ab/nsp31475S1475delAGT---11B.1.5260.000024
ORF1ab/nsp31475S1475GAgtGgt11B.1.5260.000024
ORF1ab/nsp31475S1475TaGtaCt11B.1.5260.000024
ORF1ab/nsp31475S1475delAGT---11B.1.5330.009615
ORF1ab/nsp31475S1475NaGtaAt11B.1.5640.000426
ORF1ab/nsp31475S1475NaGtaAt11B.1.5770.000687
ORF1ab/nsp31475S1475delAGT---11B.1.5770.000687
ORF1ab/nsp31475S1475NaGtaAt11B.1.5960.000087
ORF1ab/nsp31475S1475RAgtCgt11B.1.617.20.000004
ORF1ab/nsp31475S1475LAGtCTt11B.1.617.20.000004
ORF1ab/nsp31475S1475TaGTaCG11B.1.617.20.000004
ORF1ab/nsp31475S1475GAgtGgt11B.1.6190.000871
ORF1ab/nsp31475S1475GAgtGgt11B.1.6210.000089
ORF1ab/nsp31475S1475CAgtTgt11B.1.6210.000089
ORF1ab/nsp31475S1475SagTagC11B.1.6210.000089
ORF1ab/nsp31475S1475RagTagA11B.1.6210.000089
ORF1ab/nsp31475S1475NaGtaAt11B.1.621.10.000506
ORF1ab/nsp31475S1475IaGtaTt11B.1.621.10.000506
ORF1ab/nsp31475S1475NaGtaAt11B.1.6230.000536
ORF1ab/nsp31475S1475DAGtGAt11B.1.6280.000352
ORF1ab/nsp31475S1475NaGtaAt11B.1.6360.006711
ORF1ab/nsp31475S1475del1Agt-gt11B.340.013699
ORF1ab/nsp31475S1475GAgtGgt11C.350.000774
ORF1ab/nsp31475S1475NaGtaAt11C.350.000774
ORF1ab/nsp31475S1475TaGtaCt11C.350.000774
ORF1ab/nsp31475S1475delAGT---11C.350.000774
ORF1ab/nsp31475S1475NaGtaAt11C.36.3.10.002717
ORF1ab/nsp31475S1475SagTagC11D.20.000075
ORF1ab/nsp31475S1475TaGTaCA11P.10.000016
ORF1ab/nsp31475S1475delAGT---11P.10.000016
ORF1ab/nsp31475S1475GAgtGgt11P.10.000016
ORF1ab/nsp31475S1475NaGtaAt11P.1.100.000269
ORF1ab/nsp31475S1475SagTagC11P.1.120.000484
ORF1ab/nsp31475S1475delAGT---11P.1.150.000232
ORF1ab/nsp31475S1475NaGtaAt11Q.40.000455
ORF1ab/nsp31475S1475GAgtGgt11Q.80.000165