CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1467 & Codon = tTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31467S1467FS2285FnonsyntCttTt493449320.9995957118-7120

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31467S1467FtCttTt49324934All0.000943
ORF1ab/nsp31467S1467FtCttTt921921B.1.1.70.000825
ORF1ab/nsp31467S1467FtCttTt913913AY.40.001421
ORF1ab/nsp31467S1467FtCttTt605605AY.46.60.043685
ORF1ab/nsp31467S1467FtCttTt220221B.1.617.20.000828
ORF1ab/nsp31467S1467FtCttTt177177AY.30.001761
ORF1ab/nsp31467S1467FtCttTt158158AY.290.002492
ORF1ab/nsp31467S1467FtCttTt104104B.1.20.000916
ORF1ab/nsp31467S1467FtCttTt9595AY.430.000421
ORF1ab/nsp31467S1467FtCttTt9393AY.1030.000577
ORF1ab/nsp31467S1467FtCttTt8686AY.250.000517
ORF1ab/nsp31467S1467FtCttTt8383AY.440.000505
ORF1ab/nsp31467S1467FtCttTt8282B.10.000751
ORF1ab/nsp31467S1467FtCttTt8080B.1.177.210.006118
ORF1ab/nsp31467S1467FtCttTt7979B.1.4290.001859
ORF1ab/nsp31467S1467FtCttTt6060B.1.3510.001784
ORF1ab/nsp31467S1467FtCttTt4848AY.4.20.001041
ORF1ab/nsp31467S1467FtCttTt4242B.1.4970.01322
ORF1ab/nsp31467S1467FtCttTt4141AY.3.10.003496
ORF1ab/nsp31467S1467FtCttTt3737B.1.5260.00087
ORF1ab/nsp31467S1467FtCttTt3434B.1.5170.014518
ORF1ab/nsp31467S1467FtCttTt3434P.10.000536
ORF1ab/nsp31467S1467FtCttTt3333B.1.2430.002296
ORF1ab/nsp31467S1467FtCttTt3131B.1.1770.000408
ORF1ab/nsp31467S1467FtCttTt2929AY.1020.000769
ORF1ab/nsp31467S1467FtCttTt2828AY.410.00823
ORF1ab/nsp31467S1467FtCttTt2828B.1.1.2840.003007
ORF1ab/nsp31467S1467FtCttTt2525AY.50.000516
ORF1ab/nsp31467S1467FtCttTt2424AY.390.000593
ORF1ab/nsp31467S1467FtCttTt2223B.1.10.000399
ORF1ab/nsp31467S1467FtCttTt1818AY.1000.000828
ORF1ab/nsp31467S1467FtCttTt1818AY.470.00056
ORF1ab/nsp31467S1467FtCttTt1818B.1.1.10.00588
ORF1ab/nsp31467S1467FtCttTt1818B.1.1.5190.000715
ORF1ab/nsp31467S1467FtCttTt1818C.370.002089
ORF1ab/nsp31467S1467FtCttTt1616B.1.6370.001169
ORF1ab/nsp31467S1467FtCttTt1515B.1.1.4011
ORF1ab/nsp31467S1467FtCttTt1515B.1.4270.000757
ORF1ab/nsp31467S1467FtCttTt1212AY.60.000494
ORF1ab/nsp31467S1467FtCttTt1111AY.200.000428
ORF1ab/nsp31467S1467FtCttTt1111AY.230.000767
ORF1ab/nsp31467S1467FtCttTt1111AY.9.20.000404
ORF1ab/nsp31467S1467FtCttTt1111B.1.2210.000781
ORF1ab/nsp31467S1467FtCttTt1111B.1.5790.123596
ORF1ab/nsp31467S1467FtCttTt1111B.1.5960.000959
ORF1ab/nsp31467S1467FtCttTt1010B.1.2340.001319
ORF1ab/nsp31467S1467FtCttTt99AY.340.000873
ORF1ab/nsp31467S1467FtCttTt99AY.420.000362
ORF1ab/nsp31467S1467FtCttTt99AY.98.10.000436
ORF1ab/nsp31467S1467FtCttTt99B.1.220.011858
ORF1ab/nsp31467S1467FtCttTt99D.20.000675
ORF1ab/nsp31467S1467FtCttTt88AY.1170.000676
ORF1ab/nsp31467S1467FtCttTt88AY.1190.000282
ORF1ab/nsp31467S1467FtCttTt88B.1.1.3010.009434
ORF1ab/nsp31467S1467FtCttTt88B.1.3670.006339
ORF1ab/nsp31467S1467FtCttTt77AY.740.00081
ORF1ab/nsp31467S1467FtCttTt77B.1.5250.000792
ORF1ab/nsp31467S1467FtCttTt66AY.1130.000854
ORF1ab/nsp31467S1467FtCttTt66AY.320.003195
ORF1ab/nsp31467S1467FtCttTt66AY.46.40.000987
ORF1ab/nsp31467S1467FtCttTt66AY.540.000572
ORF1ab/nsp31467S1467FtCttTt66AY.90.000406
ORF1ab/nsp31467S1467FtCttTt66AY.900.004107
ORF1ab/nsp31467S1467FtCttTt66B.1.1.3060.00263
ORF1ab/nsp31467S1467FtCttTt66B.1.1.3110.002149
ORF1ab/nsp31467S1467FtCttTt66B.1.177.450.002287
ORF1ab/nsp31467S1467FtCttTt66B.1.177.90.007989
ORF1ab/nsp31467S1467FtCttTt66B.1.351.50.003597
ORF1ab/nsp31467S1467FtCttTt66R.10.00054
ORF1ab/nsp31467S1467FtCttTt55AY.190.005701
ORF1ab/nsp31467S1467FtCttTt55AY.7.20.002796
ORF1ab/nsp31467S1467FtCttTt55B.1.1.2070.00591
ORF1ab/nsp31467S1467FtCttTt55B.1.1.460.021834
ORF1ab/nsp31467S1467FtCttTt55B.1.2580.000333
ORF1ab/nsp31467S1467FtCttTt55B.1.3360.012195
ORF1ab/nsp31467S1467FtCttTt55B.40.011038
ORF1ab/nsp31467S1467FtCttTt55P.1.140.000239
ORF1ab/nsp31467S1467FtCttTt44AD.20.000876
ORF1ab/nsp31467S1467FtCttTt44AY.120.001264
ORF1ab/nsp31467S1467FtCttTt44AY.1200.000149
ORF1ab/nsp31467S1467FtCttTt44AY.610.000419
ORF1ab/nsp31467S1467FtCttTt44AY.9.10.000335
ORF1ab/nsp31467S1467FtCttTt44AY.980.000316
ORF1ab/nsp31467S1467FtCttTt44AY.99.20.000369
ORF1ab/nsp31467S1467FtCttTt44B.1.1.330.001684
ORF1ab/nsp31467S1467FtCttTt44B.1.177.570.001124
ORF1ab/nsp31467S1467FtCttTt44B.1.2650.005083
ORF1ab/nsp31467S1467FtCttTt44B.1.360.000584
ORF1ab/nsp31467S1467FtCttTt44B.1.5610.001588
ORF1ab/nsp31467S1467FtCttTt44B.60.00364
ORF1ab/nsp31467S1467FtCttTt44C.36.30.002269
ORF1ab/nsp31467S1467FtCttTt44P.1.70.001277
ORF1ab/nsp31467S1467FtCttTt44Q.80.00066
ORF1ab/nsp31467S1467FtCttTt33AY.1040.005952
ORF1ab/nsp31467S1467FtCttTt33AY.1090.002219
ORF1ab/nsp31467S1467FtCttTt33AY.1100.000338
ORF1ab/nsp31467S1467FtCttTt33AY.1180.000188
ORF1ab/nsp31467S1467FtCttTt33AY.270.000194
ORF1ab/nsp31467S1467FtCttTt33AY.360.000445
ORF1ab/nsp31467S1467FtCttTt33AY.4.2.10.000447
ORF1ab/nsp31467S1467FtCttTt33AY.460.000312
ORF1ab/nsp31467S1467FtCttTt33AY.630.001161
ORF1ab/nsp31467S1467FtCttTt33AY.850.001282
ORF1ab/nsp31467S1467FtCttTt33B.1.1.2220.000612
ORF1ab/nsp31467S1467FtCttTt33B.1.1.500.002037
ORF1ab/nsp31467S1467FtCttTt33B.1.1110.003525
ORF1ab/nsp31467S1467FtCttTt33B.1.1600.000094
ORF1ab/nsp31467S1467FtCttTt33B.1.177.810.000568
ORF1ab/nsp31467S1467FtCttTt33B.1.36.160.004274
ORF1ab/nsp31467S1467FtCttTt33B.1.6210.000266
ORF1ab/nsp31467S1467FtCttTt33Q.40.001364
ORF1ab/nsp31467S1467FtCttTt22AY.10.000791
ORF1ab/nsp31467S1467FtCttTt22AY.116.10.000623
ORF1ab/nsp31467S1467FtCttTt22AY.1210.000271
ORF1ab/nsp31467S1467FtCttTt22AY.160.000759
ORF1ab/nsp31467S1467FtCttTt22AY.220.004184
ORF1ab/nsp31467S1467FtCttTt22AY.240.000862
ORF1ab/nsp31467S1467FtCttTt22AY.260.000057
ORF1ab/nsp31467S1467FtCttTt22AY.330.000134
ORF1ab/nsp31467S1467FtCttTt22AY.39.10.000079
ORF1ab/nsp31467S1467FtCttTt22AY.39.20.003082
ORF1ab/nsp31467S1467FtCttTt22AY.4.40.000818
ORF1ab/nsp31467S1467FtCttTt22AY.4.50.000215
ORF1ab/nsp31467S1467FtCttTt22AY.560.00321
ORF1ab/nsp31467S1467FtCttTt22AY.590.001059
ORF1ab/nsp31467S1467FtCttTt22AY.70.000392
ORF1ab/nsp31467S1467FtCttTt22AY.730.001331
ORF1ab/nsp31467S1467FtCttTt22AY.75.10.000361
ORF1ab/nsp31467S1467FtCttTt22B.1.1.1640.010309
ORF1ab/nsp31467S1467FtCttTt22B.1.1.2720.010417
ORF1ab/nsp31467S1467FtCttTt22B.1.1.3050.007722
ORF1ab/nsp31467S1467FtCttTt22B.1.1.3180.000604
ORF1ab/nsp31467S1467FtCttTt22B.1.1.3690.000892
ORF1ab/nsp31467S1467FtCttTt22B.1.1.3980.006452
ORF1ab/nsp31467S1467FtCttTt22B.1.1.5230.003125
ORF1ab/nsp31467S1467FtCttTt22B.1.1.710.012121
ORF1ab/nsp31467S1467FtCttTt22B.1.177.40.000422
ORF1ab/nsp31467S1467FtCttTt22B.1.177.410.005
ORF1ab/nsp31467S1467FtCttTt22B.1.177.420.001789
ORF1ab/nsp31467S1467FtCttTt22B.1.2400.000431
ORF1ab/nsp31467S1467FtCttTt22B.1.258.220.005333
ORF1ab/nsp31467S1467FtCttTt22B.1.36.170.000988
ORF1ab/nsp31467S1467FtCttTt22B.1.36.180.00084
ORF1ab/nsp31467S1467FtCttTt22B.1.36.360.001204
ORF1ab/nsp31467S1467FtCttTt22B.1.3690.00057
ORF1ab/nsp31467S1467FtCttTt22B.1.4000.000858
ORF1ab/nsp31467S1467FtCttTt22B.1.5770.001375
ORF1ab/nsp31467S1467FtCttTt22B.1.6280.000705
ORF1ab/nsp31467S1467FtCttTt22B.30.001661
ORF1ab/nsp31467S1467FtCttTt22P.1.160.000748
ORF1ab/nsp31467S1467FtCttTt22P.1.170.000324
ORF1ab/nsp31467S1467FtCttTt22Q.30.00029
ORF1ab/nsp31467S1467FtCttTt110.055556
ORF1ab/nsp31467S1467FtCttTt11A.2.50.000499
ORF1ab/nsp31467S1467FtCttTt11A.50.001923
ORF1ab/nsp31467S1467FtCttTt11AE.30.032258
ORF1ab/nsp31467S1467FtCttTt11AE.80.000489
ORF1ab/nsp31467S1467FtCttTt11AP.10.001502
ORF1ab/nsp31467S1467FtCttTt11AY.1070.000466
ORF1ab/nsp31467S1467FtCttTt11AY.110.001339
ORF1ab/nsp31467S1467FtCttTt11AY.120.10.000321
ORF1ab/nsp31467S1467FtCttTt11AY.130.000161
ORF1ab/nsp31467S1467FtCttTt11AY.140.000088
ORF1ab/nsp31467S1467FtCttTt11AY.16.10.00047
ORF1ab/nsp31467S1467FtCttTt11AY.300.000396
ORF1ab/nsp31467S1467FtCttTt11AY.34.10.00051
ORF1ab/nsp31467S1467FtCttTt11AY.350.000233
ORF1ab/nsp31467S1467FtCttTt11AY.450.000122
ORF1ab/nsp31467S1467FtCttTt11AY.46.10.001027
ORF1ab/nsp31467S1467FtCttTt11AY.5.40.000277
ORF1ab/nsp31467S1467FtCttTt11AY.550.000917
ORF1ab/nsp31467S1467FtCttTt11AY.570.000656
ORF1ab/nsp31467S1467FtCttTt11AY.7.10.000113
ORF1ab/nsp31467S1467FtCttTt11AY.750.000056
ORF1ab/nsp31467S1467FtCttTt11AY.780.001541
ORF1ab/nsp31467S1467FtCttTt11AY.830.001724
ORF1ab/nsp31467S1467FtCttTt11AY.840.000437
ORF1ab/nsp31467S1467FtCttTt11AY.880.000884
ORF1ab/nsp31467S1467FtCttTt11AY.920.000287
ORF1ab/nsp31467S1467FtCttTt11AY.990.001049
ORF1ab/nsp31467S1467FtCttTt11B0.000128
ORF1ab/nsp31467S1467FtCttTt11B.1.1.1530.001095
ORF1ab/nsp31467S1467FtCttTt11B.1.1.2140.000055
ORF1ab/nsp31467S1467FtCttTt11B.1.1.3030.002762
ORF1ab/nsp31467S1467FtCttTt11B.1.1.3120.001912
ORF1ab/nsp31467S1467FtCttTt11B.1.1.3170.000412
ORF1ab/nsp31467S1467FtCttTt11B.1.1.3440.010753
ORF1ab/nsp31467S1467FtCttTt11B.1.1.3510.002793
ORF1ab/nsp31467S1467FtCttTt11B.1.1.3540.004386
ORF1ab/nsp31467S1467FtCttTt11B.1.1.3920.052632
ORF1ab/nsp31467S1467FtCttTt11B.1.1.4130.006897
ORF1ab/nsp31467S1467FtCttTt11B.1.1.4270.142857
ORF1ab/nsp31467S1467FtCttTt11B.1.1.5260.003546
ORF1ab/nsp31467S1467FtCttTt11B.1.1.670.004566
ORF1ab/nsp31467S1467FtCttTt11B.1.1.700.000341
ORF1ab/nsp31467S1467FtCttTt11B.1.1.750.010638
ORF1ab/nsp31467S1467FtCttTt11B.1.1.980.018519
ORF1ab/nsp31467S1467FtCttTt11B.1.1390.000733
ORF1ab/nsp31467S1467FtCttTt11B.1.1400.018868
ORF1ab/nsp31467S1467FtCttTt11B.1.177.100.000878
ORF1ab/nsp31467S1467FtCttTt11B.1.177.110.001698
ORF1ab/nsp31467S1467FtCttTt11B.1.177.120.000152
ORF1ab/nsp31467S1467FtCttTt11B.1.177.150.000631
ORF1ab/nsp31467S1467FtCttTt11B.1.177.170.000821
ORF1ab/nsp31467S1467FtCttTt11B.1.177.330.001645
ORF1ab/nsp31467S1467FtCttTt11B.1.177.400.005155
ORF1ab/nsp31467S1467FtCttTt11B.1.177.540.000606
ORF1ab/nsp31467S1467FtCttTt11B.1.177.600.000218
ORF1ab/nsp31467S1467FtCttTt11B.1.177.70.000165
ORF1ab/nsp31467S1467FtCttTt11B.1.177.840.006667
ORF1ab/nsp31467S1467FtCttTt11B.1.177.860.000183
ORF1ab/nsp31467S1467FtCttTt11B.1.2060.000816
ORF1ab/nsp31467S1467FtCttTt11B.1.214.20.0006
ORF1ab/nsp31467S1467FtCttTt11B.1.2290.009709
ORF1ab/nsp31467S1467FtCttTt11B.1.2390.001221
ORF1ab/nsp31467S1467FtCttTt11B.1.2410.000812
ORF1ab/nsp31467S1467FtCttTt11B.1.258.160.001637
ORF1ab/nsp31467S1467FtCttTt11B.1.3060.005714
ORF1ab/nsp31467S1467FtCttTt11B.1.3240.001605
ORF1ab/nsp31467S1467FtCttTt11B.1.351.30.000876
ORF1ab/nsp31467S1467FtCttTt11B.1.3550.011111
ORF1ab/nsp31467S1467FtCttTt11B.1.36.70.004
ORF1ab/nsp31467S1467FtCttTt11B.1.36.80.001
ORF1ab/nsp31467S1467FtCttTt11B.1.362.20.004717
ORF1ab/nsp31467S1467FtCttTt11B.1.3700.008
ORF1ab/nsp31467S1467FtCttTt11B.1.3960.000706
ORF1ab/nsp31467S1467FtCttTt11B.1.416.10.001563
ORF1ab/nsp31467S1467FtCttTt11B.1.438.10.000107
ORF1ab/nsp31467S1467FtCttTt11B.1.466.20.000391
ORF1ab/nsp31467S1467FtCttTt11B.1.4740.001901
ORF1ab/nsp31467S1467FtCttTt11B.1.564.10.001577
ORF1ab/nsp31467S1467FtCttTt11B.1.5730.006098
ORF1ab/nsp31467S1467FtCttTt11B.1.617.10.000129
ORF1ab/nsp31467S1467FtCttTt11B.1.6180.004032
ORF1ab/nsp31467S1467FtCttTt11B.1.619.10.000641
ORF1ab/nsp31467S1467FtCttTt11B.1.621.10.000506
ORF1ab/nsp31467S1467FtCttTt11B.1.80.001972
ORF1ab/nsp31467S1467FtCttTt11B.1.90.006173
ORF1ab/nsp31467S1467FtCttTt11N.30.005814
ORF1ab/nsp31467S1467FtCttTt11P.1.10.000318
ORF1ab/nsp31467S1467FtCttTt11P.1.80.004785
ORF1ab/nsp31467S1467FtCttTt11P.20.000187
ORF1ab/nsp31467S1467FtCttTt11P.50.013699
ORF1ab/nsp31467S1467FtCttTt11Q.10.000126
ORF1ab/nsp31467S1467FtCttTt11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.