CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1465

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31465T1465IT2283InonsynaCtaTt787378710.9997467112-7114
ORF1ab/nsp31465T1465IT2283InonsynaCTaTC787320.0002540337112-7114
ORF1ab/nsp31465T1465TT2283TsynacTacC3992380.5964917112-7114
ORF1ab/nsp31465T1465TT2283TsynacTacA3991330.3333337112-7114
ORF1ab/nsp31465T1465TT2283TsynacTacG399280.07017547112-7114
ORF1ab/nsp31465T1465delT2283deldelACT---20520517112-7114
ORF1ab/nsp31465T1465AT2283AnonsynActGct17417417112-7114
ORF1ab/nsp31465T1465ST2283SnonsynaCtaGt71590.8309867112-7114
ORF1ab/nsp31465T1465ST2283SnonsynActTct71110.154937112-7114
ORF1ab/nsp31465T1465ST2283SnonsynAcTTcC7110.01408457112-7114
ORF1ab/nsp31465T1465NT2283NnonsynaCtaAt28270.9642867112-7114
ORF1ab/nsp31465T1465NT2283NnonsynaCTaAC2810.03571437112-7114
ORF1ab/nsp31465T1465PT2283PnonsynActCct13110.8461547112-7114
ORF1ab/nsp31465T1465PT2283PnonsynAcTCcC1320.1538467112-7114
ORF1ab/nsp31465T1465LT2283LnonsynACtCTt740.5714297112-7114
ORF1ab/nsp31465T1465LT2283LnonsynACTCTC730.4285717112-7114
ORF1ab/nsp31465T1465del1T2283del1delACT-NN730.4285717112-7114
ORF1ab/nsp31465T1465del1T2283del1delacTac-720.2857147112-7114
ORF1ab/nsp31465T1465del1T2283del1delAct-ct720.2857147112-7114
ORF1ab/nsp31465T1465del2T2283del2delaCTa--640.6666677112-7114
ORF1ab/nsp31465T1465del2T2283del2delACT--C610.1666677112-7114
ORF1ab/nsp31465T1465del2T2283del2delACTG--610.1666677112-7114
ORF1ab/nsp31465T1465FT2283FnonsynACtTTt2217112-7114
ORF1ab/nsp31465T1465YT2283YnonsynACTTAC210.57112-7114
ORF1ab/nsp31465T1465YT2283YnonsynACtTAt210.57112-7114
ORF1ab/nsp31465T1465DT2283DnonsynACtGAt1117112-7114
ORF1ab/nsp31465T1465KT2283KnonsynaCTaAA1117112-7114

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31465T1465IaCtaTt78717873All0.001505
ORF1ab/nsp31465T1465IaCTaTC27873All0
ORF1ab/nsp31465T1465IaCtaTt23462346AY.40.003651
ORF1ab/nsp31465T1465IaCtaTt18141814B.1.1.70.001624
ORF1ab/nsp31465T1465TacTacC238399All0.000046
ORF1ab/nsp31465T1465TacTacA133399All0.000025
ORF1ab/nsp31465T1465TacTacG28399All0.000005
ORF1ab/nsp31465T1465IaCtaTt331331B.1.20.002915
ORF1ab/nsp31465T1465IaCtaTt320321B.1.617.20.001205
ORF1ab/nsp31465T1465IaCTaTC1321B.1.617.20.000004
ORF1ab/nsp31465T1465IaCtaTt244244AY.30.002427
ORF1ab/nsp31465T1465delACT---205205All0.000039
ORF1ab/nsp31465T1465IaCtaTt204204B.1.2430.014195
ORF1ab/nsp31465T1465AActGct174174All0.000033
ORF1ab/nsp31465T1465IaCtaTt155155P.10.002442
ORF1ab/nsp31465T1465IaCtaTt154154AY.430.000682
ORF1ab/nsp31465T1465IaCtaTt127127AY.440.000773
ORF1ab/nsp31465T1465IaCtaTt116116AY.250.000698
ORF1ab/nsp31465T1465IaCtaTt116116B.1.6340.39726
ORF1ab/nsp31465T1465IaCtaTt8989B.1.3510.002646
ORF1ab/nsp31465T1465IaCtaTt8181B.1.10.001469
ORF1ab/nsp31465T1465TacTacC7878P.1.70.024904
ORF1ab/nsp31465T1465SaCtaGt5971All0.000011
ORF1ab/nsp31465T1465SActTct1171All0.000002
ORF1ab/nsp31465T1465SAcTTcC171All0
ORF1ab/nsp31465T1465IaCtaTt7070AY.1030.000435
ORF1ab/nsp31465T1465IaCtaTt6464B.1.1770.000843
ORF1ab/nsp31465T1465IaCtaTt5858B.1.1.3110.020774
ORF1ab/nsp31465T1465IaCtaTt5858B.1.177.320.078273
ORF1ab/nsp31465T1465IaCtaTt5555AY.1020.001458
ORF1ab/nsp31465T1465delACT---5050B.1.1.70.000045
ORF1ab/nsp31465T1465IaCtaTt4949AY.390.001211
ORF1ab/nsp31465T1465IaCtaTt4949B.10.000449
ORF1ab/nsp31465T1465AActGct4949B.1.177.440.025428
ORF1ab/nsp31465T1465IaCtaTt4646AY.260.001302
ORF1ab/nsp31465T1465TacTacC4044AY.40.000062
ORF1ab/nsp31465T1465TacTacA244AY.40.000003
ORF1ab/nsp31465T1465TacTacG244AY.40.000003
ORF1ab/nsp31465T1465TacTacA3043B.1.1.70.000027
ORF1ab/nsp31465T1465TacTacC1143B.1.1.70.00001
ORF1ab/nsp31465T1465TacTacG243B.1.1.70.000002
ORF1ab/nsp31465T1465TacTacA4040AY.410.011758
ORF1ab/nsp31465T1465IaCtaTt4040P.1.170.00647
ORF1ab/nsp31465T1465IaCtaTt3939B.1.360.00569
ORF1ab/nsp31465T1465IaCtaTt3838B.1.5260.000893
ORF1ab/nsp31465T1465IaCtaTt3333B.1.177.600.007208
ORF1ab/nsp31465T1465IaCtaTt3232B.1.5960.002788
ORF1ab/nsp31465T1465IaCtaTt2929AY.330.001937
ORF1ab/nsp31465T1465NaCtaAt2728All0.000005
ORF1ab/nsp31465T1465NaCTaAC128All0
ORF1ab/nsp31465T1465IaCtaTt2727AY.200.001049
ORF1ab/nsp31465T1465IaCtaTt2727AY.50.000558
ORF1ab/nsp31465T1465SaCtaGt2626AY.30.000259
ORF1ab/nsp31465T1465IaCtaTt2323A.2.50.011477
ORF1ab/nsp31465T1465IaCtaTt2323B.1.2320.012359
ORF1ab/nsp31465T1465IaCtaTt2222C.390.415094
ORF1ab/nsp31465T1465IaCtaTt2222D.20.001651
ORF1ab/nsp31465T1465IaCtaTt2121B.1.110.30.015086
ORF1ab/nsp31465T1465IaCtaTt2121B.1.4270.00106
ORF1ab/nsp31465T1465AActGct2020B.1.221.40.083333
ORF1ab/nsp31465T1465TacTacC1520B.1.617.20.000056
ORF1ab/nsp31465T1465TacTacA420B.1.617.20.000015
ORF1ab/nsp31465T1465TacTacG120B.1.617.20.000004
ORF1ab/nsp31465T1465IaCtaTt1919AY.290.0003
ORF1ab/nsp31465T1465IaCtaTt1919B.1.1.700.00648
ORF1ab/nsp31465T1465delACT---1919B.1.1770.00025
ORF1ab/nsp31465T1465TacTacC1618AY.230.001116
ORF1ab/nsp31465T1465TacTacA218AY.230.000139
ORF1ab/nsp31465T1465IaCtaTt1717B.1.1.5190.000675
ORF1ab/nsp31465T1465AActGct1616B.1.1.70.000014
ORF1ab/nsp31465T1465IaCtaTt1515AY.1000.00069
ORF1ab/nsp31465T1465IaCtaTt1515AY.1200.000558
ORF1ab/nsp31465T1465IaCtaTt1515AY.230.001046
ORF1ab/nsp31465T1465IaCtaTt1515AY.980.001185
ORF1ab/nsp31465T1465IaCtaTt1414AY.140.001232
ORF1ab/nsp31465T1465IaCtaTt1414R.10.00126
ORF1ab/nsp31465T1465PActCct1113All0.000002
ORF1ab/nsp31465T1465PAcTCcC213All0
ORF1ab/nsp31465T1465IaCtaTt1313AY.1180.000814
ORF1ab/nsp31465T1465IaCtaTt1313AY.1190.000459
ORF1ab/nsp31465T1465IaCtaTt1313AY.340.001261
ORF1ab/nsp31465T1465IaCtaTt1313AY.610.001362
ORF1ab/nsp31465T1465IaCtaTt1313AY.98.10.00063
ORF1ab/nsp31465T1465TacTacC1313B.1.177.110.022071
ORF1ab/nsp31465T1465IaCtaTt1313B.1.2580.000865
ORF1ab/nsp31465T1465IaCtaTt1313B.1.6100.046099
ORF1ab/nsp31465T1465IaCtaTt1313C.370.001509
ORF1ab/nsp31465T1465delACT---1212AY.40.000019
ORF1ab/nsp31465T1465IaCtaTt1212AY.470.000373
ORF1ab/nsp31465T1465IaCtaTt1212AY.540.001144
ORF1ab/nsp31465T1465IaCtaTt1212P.1.140.000574
ORF1ab/nsp31465T1465AActGct1111AY.1100.00124
ORF1ab/nsp31465T1465IaCtaTt1111B.1.4000.004719
ORF1ab/nsp31465T1465IaCtaTt1010AY.4.20.000217
ORF1ab/nsp31465T1465TacTacA710AY.440.000043
ORF1ab/nsp31465T1465TacTacC310AY.440.000018
ORF1ab/nsp31465T1465IaCtaTt1010AY.60.000411
ORF1ab/nsp31465T1465IaCtaTt1010B.1.617.10.00129
ORF1ab/nsp31465T1465IaCtaTt99A.2.5.10.043269
ORF1ab/nsp31465T1465IaCtaTt99AY.1210.001218
ORF1ab/nsp31465T1465IaCtaTt99AY.29.10.001985
ORF1ab/nsp31465T1465IaCtaTt99AY.5.30.003036
ORF1ab/nsp31465T1465IaCtaTt99AY.75.10.001623
ORF1ab/nsp31465T1465IaCtaTt99AZ.2.10.073171
ORF1ab/nsp31465T1465IaCtaTt99B.1.1.370.001736
ORF1ab/nsp31465T1465TacTacA99B.1.177.850.048913
ORF1ab/nsp31465T1465IaCtaTt99B.1.2210.000639
ORF1ab/nsp31465T1465IaCtaTt99C.160.009544
ORF1ab/nsp31465T1465TacTacC78AY.390.000173
ORF1ab/nsp31465T1465TacTacA18AY.390.000025
ORF1ab/nsp31465T1465IaCtaTt88AY.39.10.000317
ORF1ab/nsp31465T1465IaCtaTt88AY.420.000322
ORF1ab/nsp31465T1465IaCtaTt88B.1.1.2650.025237
ORF1ab/nsp31465T1465IaCtaTt88B.1.1.3050.030888
ORF1ab/nsp31465T1465IaCtaTt88B.1.1.3160.007401
ORF1ab/nsp31465T1465IaCtaTt88B.1.575.10.019512
ORF1ab/nsp31465T1465IaCtaTt88B.1.6210.000708
ORF1ab/nsp31465T1465TacTacC68P.10.000095
ORF1ab/nsp31465T1465TacTacG18P.10.000016
ORF1ab/nsp31465T1465TacTacA18P.10.000016
ORF1ab/nsp31465T1465LACtCTt47All0.000001
ORF1ab/nsp31465T1465del1ACT-NN37All0.000001
ORF1ab/nsp31465T1465LACTCTC37All0.000001
ORF1ab/nsp31465T1465del1acTac-27All0
ORF1ab/nsp31465T1465del1Act-ct27All0
ORF1ab/nsp31465T1465TacTacA37AY.250.000018
ORF1ab/nsp31465T1465TacTacC37AY.250.000018
ORF1ab/nsp31465T1465TacTacG17AY.250.000006
ORF1ab/nsp31465T1465TacTacC77AY.260.000198
ORF1ab/nsp31465T1465SaCtaGt67AY.40.000009
ORF1ab/nsp31465T1465SActTct17AY.40.000002
ORF1ab/nsp31465T1465AActGct77AY.430.000031
ORF1ab/nsp31465T1465AActGct77B.1.1770.000092
ORF1ab/nsp31465T1465IaCtaTt77B.1.177.580.009321
ORF1ab/nsp31465T1465IaCtaTt77Q.10.000884
ORF1ab/nsp31465T1465del2aCTa--46All0.000001
ORF1ab/nsp31465T1465del2ACT--C16All0
ORF1ab/nsp31465T1465del2ACTG--16All0
ORF1ab/nsp31465T1465AActGct66AY.1020.000159
ORF1ab/nsp31465T1465IaCtaTt66AY.190.006842
ORF1ab/nsp31465T1465TacTacC46AY.30.00004
ORF1ab/nsp31465T1465TacTacA16AY.30.00001
ORF1ab/nsp31465T1465TacTacG16AY.30.00001
ORF1ab/nsp31465T1465IaCtaTt66AY.770.006764
ORF1ab/nsp31465T1465TacTacA66AY.90.000406
ORF1ab/nsp31465T1465IaCtaTt66AY.99.20.000553
ORF1ab/nsp31465T1465AActGct66B.10.000055
ORF1ab/nsp31465T1465delACT---66B.1.10.000109
ORF1ab/nsp31465T1465TacTacC36B.1.10.000054
ORF1ab/nsp31465T1465TacTacA26B.1.10.000036
ORF1ab/nsp31465T1465TacTacG16B.1.10.000018
ORF1ab/nsp31465T1465IaCtaTt66B.1.1.2140.000333
ORF1ab/nsp31465T1465IaCtaTt66B.1.1.630.002315
ORF1ab/nsp31465T1465IaCtaTt66B.1.1600.000187
ORF1ab/nsp31465T1465IaCtaTt66B.1.3110.001647
ORF1ab/nsp31465T1465AActGct66B.1.3510.000178
ORF1ab/nsp31465T1465IaCtaTt66B.1.4290.000141
ORF1ab/nsp31465T1465IaCtaTt66B.1.466.20.002347
ORF1ab/nsp31465T1465IaCtaTt66B.1.5610.002382
ORF1ab/nsp31465T1465IaCtaTt66B.1.6090.002876
ORF1ab/nsp31465T1465IaCtaTt66N.50.010601
ORF1ab/nsp31465T1465IaCtaTt66P.1.70.001916
ORF1ab/nsp31465T1465IaCtaTt55A.300.714286
ORF1ab/nsp31465T1465delACT---55AY.1180.000313
ORF1ab/nsp31465T1465SaCtaGt55AY.250.00003
ORF1ab/nsp31465T1465IaCtaTt55AY.350.001165
ORF1ab/nsp31465T1465delACT---55AY.4.50.000537
ORF1ab/nsp31465T1465SaCtaGt55AY.430.000022
ORF1ab/nsp31465T1465IaCtaTt55AY.480.002326
ORF1ab/nsp31465T1465TacTacG55AY.50.000103
ORF1ab/nsp31465T1465IaCtaTt55AY.750.00028
ORF1ab/nsp31465T1465IaCtaTt55AY.870.004163
ORF1ab/nsp31465T1465IaCtaTt55AY.90.000338
ORF1ab/nsp31465T1465delACT---55B.10.000046
ORF1ab/nsp31465T1465TacTacA35B.10.000027
ORF1ab/nsp31465T1465TacTacC25B.10.000018
ORF1ab/nsp31465T1465IaCtaTt55B.1.1.3060.002192
ORF1ab/nsp31465T1465IaCtaTt55B.1.1.3170.002058
ORF1ab/nsp31465T1465IaCtaTt55B.1.2410.004058
ORF1ab/nsp31465T1465IaCtaTt55B.1.258.170.00052
ORF1ab/nsp31465T1465AActGct55B.1.36.160.007123
ORF1ab/nsp31465T1465IaCtaTt55B.1.595.30.131579
ORF1ab/nsp31465T1465delACT---55B.1.617.20.000019
ORF1ab/nsp31465T1465IaCtaTt55C.360.004554
ORF1ab/nsp31465T1465IaCtaTt55P.1.10.001588
ORF1ab/nsp31465T1465IaCtaTt55P.1.150.001162
ORF1ab/nsp31465T1465IaCtaTt55P.20.000933
ORF1ab/nsp31465T1465IaCtaTt55Q.80.000825
ORF1ab/nsp31465T1465IaCtaTt55Z.10.014451
ORF1ab/nsp31465T1465delACT---440.222222
ORF1ab/nsp31465T1465TacTacC24AY.1030.000012
ORF1ab/nsp31465T1465TacTacG14AY.1030.000006
ORF1ab/nsp31465T1465TacTacA14AY.1030.000006
ORF1ab/nsp31465T1465delACT---44AY.250.000024
ORF1ab/nsp31465T1465delACT---44AY.430.000018
ORF1ab/nsp31465T1465IaCtaTt44AY.450.000487
ORF1ab/nsp31465T1465IaCtaTt44AY.670.001857
ORF1ab/nsp31465T1465IaCtaTt44AY.9.10.000335
ORF1ab/nsp31465T1465delACT---44AY.98.10.000194
ORF1ab/nsp31465T1465delACT---44B.1.1.2180.030769
ORF1ab/nsp31465T1465IaCtaTt44B.1.1.250.002274
ORF1ab/nsp31465T1465IaCtaTt44B.1.1.2660.04878
ORF1ab/nsp31465T1465SActTct34B.1.1.70.000003
ORF1ab/nsp31465T1465SaCtaGt14B.1.1.70.000001
ORF1ab/nsp31465T1465AActGct44B.1.1600.000125
ORF1ab/nsp31465T1465IaCtaTt44B.1.177.540.002426
ORF1ab/nsp31465T1465TacTacC44B.1.20.000035
ORF1ab/nsp31465T1465IaCtaTt44B.1.36.290.002069
ORF1ab/nsp31465T1465IaCtaTt44B.1.5250.000453
ORF1ab/nsp31465T1465AActGct44B.1.5260.000094
ORF1ab/nsp31465T1465IaCtaTt44P.40.015209
ORF1ab/nsp31465T1465delACT---33AD.20.000657
ORF1ab/nsp31465T1465NaCtaAt33AY.1020.00008
ORF1ab/nsp31465T1465IaCtaTt33AY.1060.001005
ORF1ab/nsp31465T1465IaCtaTt33AY.1170.000254
ORF1ab/nsp31465T1465NaCtaAt33AY.290.000047
ORF1ab/nsp31465T1465AActGct33AY.290.000047
ORF1ab/nsp31465T1465SaCtaGt33AY.330.0002
ORF1ab/nsp31465T1465NaCtaAt33AY.40.000005
ORF1ab/nsp31465T1465delACT---33AY.440.000018
ORF1ab/nsp31465T1465SaCtaGt23AY.440.000012
ORF1ab/nsp31465T1465SActTct13AY.440.000006
ORF1ab/nsp31465T1465IaCtaTt33AY.460.000312
ORF1ab/nsp31465T1465IaCtaTt33AY.46.50.000595
ORF1ab/nsp31465T1465IaCtaTt33AY.800.003386
ORF1ab/nsp31465T1465IaCtaTt33AY.840.001312
ORF1ab/nsp31465T1465TacTacG23AY.980.000158
ORF1ab/nsp31465T1465TacTacC13AY.980.000079
ORF1ab/nsp31465T1465SAcTTcC13B.1.10.000018
ORF1ab/nsp31465T1465SaCtaGt13B.1.10.000018
ORF1ab/nsp31465T1465SActTct13B.1.10.000018
ORF1ab/nsp31465T1465IaCtaTt33B.1.1.10.00098
ORF1ab/nsp31465T1465IaCtaTt33B.1.1.1710.011029
ORF1ab/nsp31465T1465IaCtaTt33B.1.1.280.000934
ORF1ab/nsp31465T1465IaCtaTt33B.1.1.3120.005736
ORF1ab/nsp31465T1465IaCtaTt33B.1.1.390.001529
ORF1ab/nsp31465T1465TacTacA33B.1.1.500.002037
ORF1ab/nsp31465T1465IaCtaTt33B.1.177.440.001557
ORF1ab/nsp31465T1465IaCtaTt33B.1.177.810.000568
ORF1ab/nsp31465T1465IaCtaTt33B.1.2340.000396
ORF1ab/nsp31465T1465IaCtaTt33B.1.2350.007557
ORF1ab/nsp31465T1465TacTacC33B.1.3510.000089
ORF1ab/nsp31465T1465IaCtaTt33B.1.3620.004622
ORF1ab/nsp31465T1465IaCtaTt33B.1.416.10.004687
ORF1ab/nsp31465T1465TacTacG23B.1.4290.000047
ORF1ab/nsp31465T1465TacTacA13B.1.4290.000024
ORF1ab/nsp31465T1465delACT---33B.1.5260.000071
ORF1ab/nsp31465T1465IaCtaTt33B.1.5640.001278
ORF1ab/nsp31465T1465AActGct33B.1.617.20.000011
ORF1ab/nsp31465T1465LACtCTt23B.1.617.20.000008
ORF1ab/nsp31465T1465PActCct23B.1.617.20.000008
ORF1ab/nsp31465T1465PAcTCcC13B.1.617.20.000004
ORF1ab/nsp31465T1465LACTCTC13B.1.617.20.000004
ORF1ab/nsp31465T1465TacTacA23B.1.6210.000177
ORF1ab/nsp31465T1465TacTacC13B.1.6210.000089
ORF1ab/nsp31465T1465IaCtaTt33P.1.160.001122
ORF1ab/nsp31465T1465IaCtaTt22A.10.000564
ORF1ab/nsp31465T1465FACtTTt22All0
ORF1ab/nsp31465T1465YACTTAC12All0
ORF1ab/nsp31465T1465YACtTAt12All0
ORF1ab/nsp31465T1465delACT---22AY.1030.000012
ORF1ab/nsp31465T1465TacTacA22AY.1060.00067
ORF1ab/nsp31465T1465IaCTaTC12AY.1130.000142
ORF1ab/nsp31465T1465PAcTCcC12AY.1130.000142
ORF1ab/nsp31465T1465LACTCTC12AY.1130.000142
ORF1ab/nsp31465T1465IaCtaTt12AY.1130.000142
ORF1ab/nsp31465T1465PActCct12AY.1130.000142
ORF1ab/nsp31465T1465LACtCTt12AY.1130.000142
ORF1ab/nsp31465T1465IaCtaTt22AY.1160.000574
ORF1ab/nsp31465T1465IaCtaTt22AY.160.000759
ORF1ab/nsp31465T1465delACT---22AY.30.00002
ORF1ab/nsp31465T1465IaCtaTt22AY.3.10.000171
ORF1ab/nsp31465T1465AActGct22AY.40.000003
ORF1ab/nsp31465T1465IaCtaTt22AY.4.2.10.000298
ORF1ab/nsp31465T1465IaCtaTt22AY.4.50.000215
ORF1ab/nsp31465T1465del1Act-ct12AY.430.000004
ORF1ab/nsp31465T1465del1acTac-12AY.430.000004
ORF1ab/nsp31465T1465IaCtaTt22AY.46.20.001271
ORF1ab/nsp31465T1465delACT---22AY.50.000041
ORF1ab/nsp31465T1465delACT---22AY.5.40.000553
ORF1ab/nsp31465T1465IaCtaTt22AY.550.001835
ORF1ab/nsp31465T1465IaCtaTt22AY.630.000774
ORF1ab/nsp31465T1465IaCtaTt22AY.680.000547
ORF1ab/nsp31465T1465IaCtaTt22AY.820.002714
ORF1ab/nsp31465T1465IaCtaTt22AY.860.00166
ORF1ab/nsp31465T1465IaCtaTt22AY.9.20.000073
ORF1ab/nsp31465T1465TacTacG22AY.910.001461
ORF1ab/nsp31465T1465IaCtaTt22AY.940.000885
ORF1ab/nsp31465T1465IaCtaTt22AY.990.002099
ORF1ab/nsp31465T1465TacTacG22AY.99.20.000184
ORF1ab/nsp31465T1465delACT---22AZ.10.001735
ORF1ab/nsp31465T1465PActCct22B0.000256
ORF1ab/nsp31465T1465SActTct12B.10.000009
ORF1ab/nsp31465T1465SaCtaGt12B.10.000009
ORF1ab/nsp31465T1465YACTTAC12B.1.10.000018
ORF1ab/nsp31465T1465NaCTaAC12B.1.10.000018
ORF1ab/nsp31465T1465YACtTAt12B.1.10.000018
ORF1ab/nsp31465T1465NaCtaAt12B.1.10.000018
ORF1ab/nsp31465T1465IaCtaTt22B.1.1.2160.001781
ORF1ab/nsp31465T1465IaCtaTt22B.1.1.2200.003717
ORF1ab/nsp31465T1465IaCtaTt22B.1.1.3010.002358
ORF1ab/nsp31465T1465IaCtaTt22B.1.1.3180.000604
ORF1ab/nsp31465T1465TacTacC22B.1.1.330.000842
ORF1ab/nsp31465T1465IaCtaTt22B.1.1.3480.001592
ORF1ab/nsp31465T1465AActGct22B.1.1.5190.000079
ORF1ab/nsp31465T1465del2aCTa--22B.1.1.70.000002
ORF1ab/nsp31465T1465IaCtaTt22B.1.1.950.039216
ORF1ab/nsp31465T1465IaCtaTt22B.1.1.980.037037
ORF1ab/nsp31465T1465IaCtaTt22B.1.177.560.001335
ORF1ab/nsp31465T1465TacTacG22B.1.177.580.002663
ORF1ab/nsp31465T1465delACT---22B.1.177.620.002384
ORF1ab/nsp31465T1465IaCtaTt22B.1.177.860.000367
ORF1ab/nsp31465T1465IaCtaTt22B.1.1990.008264
ORF1ab/nsp31465T1465delACT---22B.1.20.000018
ORF1ab/nsp31465T1465IaCtaTt22B.1.2010.011364
ORF1ab/nsp31465T1465delACT---22B.1.2210.000142
ORF1ab/nsp31465T1465IaCtaTt22B.1.2220.003384
ORF1ab/nsp31465T1465IaCtaTt22B.1.2400.000431
ORF1ab/nsp31465T1465delACT---22B.1.2580.000133
ORF1ab/nsp31465T1465AActGct22B.1.2580.000133
ORF1ab/nsp31465T1465IaCtaTt22B.1.3060.011429
ORF1ab/nsp31465T1465IaCtaTt22B.1.351.20.000605
ORF1ab/nsp31465T1465IaCtaTt22B.1.36.220.002415
ORF1ab/nsp31465T1465IaCtaTt22B.1.3710.002245
ORF1ab/nsp31465T1465IaCtaTt22B.1.3780.013699
ORF1ab/nsp31465T1465TacTacC22B.1.4110.007407
ORF1ab/nsp31465T1465AActGct22B.1.4290.000047
ORF1ab/nsp31465T1465IaCtaTt22B.1.4590.008163
ORF1ab/nsp31465T1465TacTacC22B.1.5250.000226
ORF1ab/nsp31465T1465IaCtaTt22B.1.5750.000607
ORF1ab/nsp31465T1465IaCtaTt22B.1.5760.001813
ORF1ab/nsp31465T1465IaCtaTt22B.1.5950.000522
ORF1ab/nsp31465T1465delACT---22B.1.5960.000174
ORF1ab/nsp31465T1465IaCtaTt22B.1.6050.011905
ORF1ab/nsp31465T1465AActGct22B.1.617.10.000258
ORF1ab/nsp31465T1465SaCtaGt22B.1.617.20.000008
ORF1ab/nsp31465T1465NaCtaAt22B.1.617.20.000008
ORF1ab/nsp31465T1465del2aCTa--12B.1.617.20.000004
ORF1ab/nsp31465T1465del2ACT--C12B.1.617.20.000004
ORF1ab/nsp31465T1465IaCtaTt22B.1.6190.001742
ORF1ab/nsp31465T1465delACT---22B.1.6210.000177
ORF1ab/nsp31465T1465NaCtaAt22C.350.001548
ORF1ab/nsp31465T1465delACT---22C.350.001548
ORF1ab/nsp31465T1465IaCtaTt22C.36.30.001134
ORF1ab/nsp31465T1465IaCtaTt22N.30.011628
ORF1ab/nsp31465T1465delACT---22P.10.000032
ORF1ab/nsp31465T1465IaCtaTt22P.30.00319
ORF1ab/nsp31465T1465IaCtaTt22Q.30.00029
ORF1ab/nsp31465T1465delACT---22U.30.007722
ORF1ab/nsp31465T1465PActCct110.055556
ORF1ab/nsp31465T1465IaCtaTt11A.2.20.001689
ORF1ab/nsp31465T1465AActGct11A.270.001656
ORF1ab/nsp31465T1465IaCtaTt11A.290.005319
ORF1ab/nsp31465T1465DACtGAt11All0
ORF1ab/nsp31465T1465KaCTaAA11All0
ORF1ab/nsp31465T1465IaCtaTt11AY.100.00053
ORF1ab/nsp31465T1465IaCtaTt11AY.1010.00049
ORF1ab/nsp31465T1465delACT---11AY.1010.00049
ORF1ab/nsp31465T1465delACT---11AY.1020.000027
ORF1ab/nsp31465T1465PActCct11AY.1020.000027
ORF1ab/nsp31465T1465TacTacC11AY.1020.000027
ORF1ab/nsp31465T1465AActGct11AY.1030.000006
ORF1ab/nsp31465T1465IaCtaTt11AY.1100.000113
ORF1ab/nsp31465T1465TacTacC11AY.1130.000142
ORF1ab/nsp31465T1465NaCtaAt11AY.1130.000142
ORF1ab/nsp31465T1465IaCtaTt11AY.1140.000231
ORF1ab/nsp31465T1465TacTacC11AY.1170.000085
ORF1ab/nsp31465T1465NaCtaAt11AY.1170.000085
ORF1ab/nsp31465T1465TacTacG11AY.1190.000035
ORF1ab/nsp31465T1465delACT---11AY.1190.000035
ORF1ab/nsp31465T1465IaCtaTt11AY.120.000316
ORF1ab/nsp31465T1465delACT---11AY.1200.000037
ORF1ab/nsp31465T1465IaCtaTt11AY.120.20.001285
ORF1ab/nsp31465T1465IaCtaTt11AY.130.000161
ORF1ab/nsp31465T1465TacTacC11AY.160.00038
ORF1ab/nsp31465T1465IaCtaTt11AY.16.10.00047
ORF1ab/nsp31465T1465TacTacC11AY.200.000039
ORF1ab/nsp31465T1465AActGct11AY.200.000039
ORF1ab/nsp31465T1465IaCtaTt11AY.240.000431
ORF1ab/nsp31465T1465SActTct11AY.240.000431
ORF1ab/nsp31465T1465del1ACT-NN11AY.250.000006
ORF1ab/nsp31465T1465NaCtaAt11AY.250.000006
ORF1ab/nsp31465T1465IaCtaTt11AY.270.000065
ORF1ab/nsp31465T1465SaCtaGt11AY.290.000016
ORF1ab/nsp31465T1465TacTacC11AY.290.000016
ORF1ab/nsp31465T1465NaCtaAt11AY.30.00001
ORF1ab/nsp31465T1465AActGct11AY.30.00001
ORF1ab/nsp31465T1465KaCTaAA11AY.3.10.000085
ORF1ab/nsp31465T1465IaCtaTt11AY.34.10.00051
ORF1ab/nsp31465T1465NaCtaAt11AY.34.10.00051
ORF1ab/nsp31465T1465TacTacC11AY.360.000148
ORF1ab/nsp31465T1465IaCtaTt11AY.360.000148
ORF1ab/nsp31465T1465IaCtaTt11AY.380.000499
ORF1ab/nsp31465T1465AActGct11AY.390.000025
ORF1ab/nsp31465T1465NaCtaAt11AY.390.000025
ORF1ab/nsp31465T1465SaCtaGt11AY.39.10.00004
ORF1ab/nsp31465T1465TacTacA11AY.39.10.00004
ORF1ab/nsp31465T1465IaCtaTt11AY.4.10.000737
ORF1ab/nsp31465T1465IaCtaTt11AY.410.000294
ORF1ab/nsp31465T1465TacTacC11AY.430.000004
ORF1ab/nsp31465T1465NaCtaAt11AY.430.000004
ORF1ab/nsp31465T1465LACTCTC11AY.430.000004
ORF1ab/nsp31465T1465del1Act-ct11AY.440.000006
ORF1ab/nsp31465T1465TacTacA11AY.46.60.000072
ORF1ab/nsp31465T1465IaCtaTt11AY.46.60.000072
ORF1ab/nsp31465T1465AActGct11AY.470.000031
ORF1ab/nsp31465T1465TacTacA11AY.470.000031
ORF1ab/nsp31465T1465TacTacA11AY.5.40.000277
ORF1ab/nsp31465T1465IaCtaTt11AY.5.40.000277
ORF1ab/nsp31465T1465SaCtaGt11AY.5.40.000277
ORF1ab/nsp31465T1465delACT---11AY.590.00053
ORF1ab/nsp31465T1465TacTacC11AY.60.000041
ORF1ab/nsp31465T1465delACT---11AY.60.000041
ORF1ab/nsp31465T1465delACT---11AY.600.000938
ORF1ab/nsp31465T1465IaCtaTt11AY.620.000436
ORF1ab/nsp31465T1465IaCtaTt11AY.650.000533
ORF1ab/nsp31465T1465TacTacC11AY.660.00107
ORF1ab/nsp31465T1465TacTacC11AY.670.000464
ORF1ab/nsp31465T1465del2ACTG--11AY.670.000464
ORF1ab/nsp31465T1465IaCtaTt11AY.690.000187
ORF1ab/nsp31465T1465IaCtaTt11AY.7.10.000113
ORF1ab/nsp31465T1465IaCtaTt11AY.710.000475
ORF1ab/nsp31465T1465AActGct11AY.750.000056
ORF1ab/nsp31465T1465TacTacA11AY.750.000056
ORF1ab/nsp31465T1465SActTct11AY.850.000427
ORF1ab/nsp31465T1465IaCtaTt11AY.850.000427
ORF1ab/nsp31465T1465delACT---11AY.90.000068
ORF1ab/nsp31465T1465AActGct11AY.9.10.000084
ORF1ab/nsp31465T1465PActCct11AY.9.20.000037
ORF1ab/nsp31465T1465FACtTTt11AY.9.20.000037
ORF1ab/nsp31465T1465SActTct11AY.9.20.000037
ORF1ab/nsp31465T1465LACtCTt11AY.9.20.000037
ORF1ab/nsp31465T1465SActTct11AY.9.2.10.001976
ORF1ab/nsp31465T1465IaCtaTt11AY.910.00073
ORF1ab/nsp31465T1465IaCtaTt11AY.930.000273
ORF1ab/nsp31465T1465SaCtaGt11AY.980.000079
ORF1ab/nsp31465T1465delACT---11AY.990.001049
ORF1ab/nsp31465T1465IaCtaTt11AZ.20.000821
ORF1ab/nsp31465T1465delACT---11B0.000128
ORF1ab/nsp31465T1465PActCct11B.10.000009
ORF1ab/nsp31465T1465delACT---11B.1.1.1590.004673
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.1640.005155
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.1920.002309
ORF1ab/nsp31465T1465del2aCTa--11B.1.1.1920.002309
ORF1ab/nsp31465T1465PActCct11B.1.1.1980.001468
ORF1ab/nsp31465T1465TacTacA11B.1.1.2140.000055
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.2190.005
ORF1ab/nsp31465T1465TacTacA11B.1.1.2250.007194
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.2250.007194
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.2420.043478
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.2530.002506
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.2610.008621
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.2840.000107
ORF1ab/nsp31465T1465TacTacA11B.1.1.3000.010753
ORF1ab/nsp31465T1465delACT---11B.1.1.3050.003861
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.3090.005848
ORF1ab/nsp31465T1465delACT---11B.1.1.3110.000358
ORF1ab/nsp31465T1465delACT---11B.1.1.3120.001912
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.330.000421
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.3350.012987
ORF1ab/nsp31465T1465SaCtaGt11B.1.1.3540.004386
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.3690.000446
ORF1ab/nsp31465T1465delACT---11B.1.1.370.000193
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.4040.015873
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.4090.002833
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.4320.001266
ORF1ab/nsp31465T1465delACT---11B.1.1.460.004367
ORF1ab/nsp31465T1465delACT---11B.1.1.4640.001473
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.490.017544
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.5230.001563
ORF1ab/nsp31465T1465AActGct11B.1.1.540.003021
ORF1ab/nsp31465T1465IaCtaTt11B.1.1.550.012987
ORF1ab/nsp31465T1465del1ACT-NN11B.1.1.70.000001
ORF1ab/nsp31465T1465FACtTTt11B.1.1.70.000001
ORF1ab/nsp31465T1465PActCct11B.1.1.70.000001
ORF1ab/nsp31465T1465delACT---11B.1.1.700.000341
ORF1ab/nsp31465T1465IaCtaTt11B.1.1120.005181
ORF1ab/nsp31465T1465NaCtaAt11B.1.1180.006711
ORF1ab/nsp31465T1465IaCtaTt11B.1.1270.002198
ORF1ab/nsp31465T1465IaCtaTt11B.1.130.002375
ORF1ab/nsp31465T1465delACT---11B.1.1600.000031
ORF1ab/nsp31465T1465IaCtaTt11B.1.160.160.000929
ORF1ab/nsp31465T1465delACT---11B.1.160.70.002079
ORF1ab/nsp31465T1465delACT---11B.1.177.100.000878
ORF1ab/nsp31465T1465delACT---11B.1.177.110.001698
ORF1ab/nsp31465T1465delACT---11B.1.177.150.000631
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.160.000664
ORF1ab/nsp31465T1465delACT---11B.1.177.160.000664
ORF1ab/nsp31465T1465delACT---11B.1.177.210.000076
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.40.000211
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.500.004695
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.520.001757
ORF1ab/nsp31465T1465delACT---11B.1.177.530.002392
ORF1ab/nsp31465T1465delACT---11B.1.177.540.000606
ORF1ab/nsp31465T1465delACT---11B.1.177.570.000281
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.570.000281
ORF1ab/nsp31465T1465delACT---11B.1.177.60.000977
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.70.000165
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.720.00339
ORF1ab/nsp31465T1465NaCtaAt11B.1.177.730.000566
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.730.000566
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.750.001041
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.80.000752
ORF1ab/nsp31465T1465IaCtaTt11B.1.177.830.001481
ORF1ab/nsp31465T1465delACT---11B.1.177.90.001332
ORF1ab/nsp31465T1465AActGct11B.1.20.000009
ORF1ab/nsp31465T1465NaCtaAt11B.1.20.000009
ORF1ab/nsp31465T1465del1ACT-NN11B.1.20.000009
ORF1ab/nsp31465T1465IaCtaTt11B.1.2060.000816
ORF1ab/nsp31465T1465IaCtaTt11B.1.214.20.0006
ORF1ab/nsp31465T1465IaCtaTt11B.1.220.001318
ORF1ab/nsp31465T1465TacTacA11B.1.2230.002778
ORF1ab/nsp31465T1465IaCtaTt11B.1.230.006061
ORF1ab/nsp31465T1465TacTacA11B.1.2580.000067
ORF1ab/nsp31465T1465IaCtaTt11B.1.258.40.003448
ORF1ab/nsp31465T1465IaCtaTt11B.1.258.50.008772
ORF1ab/nsp31465T1465delACT---11B.1.2650.001271
ORF1ab/nsp31465T1465IaCtaTt11B.1.2650.001271
ORF1ab/nsp31465T1465NaCtaAt11B.1.2790.000514
ORF1ab/nsp31465T1465IaCtaTt11B.1.2810.021739
ORF1ab/nsp31465T1465IaCtaTt11B.1.2930.0125
ORF1ab/nsp31465T1465IaCtaTt11B.1.3240.001605
ORF1ab/nsp31465T1465IaCtaTt11B.1.3360.002439
ORF1ab/nsp31465T1465IaCtaTt11B.1.36.170.000494
ORF1ab/nsp31465T1465delACT---11B.1.36.170.000494
ORF1ab/nsp31465T1465IaCtaTt11B.1.36.180.00042
ORF1ab/nsp31465T1465NaCtaAt11B.1.36.290.000517
ORF1ab/nsp31465T1465IaCtaTt11B.1.36.310.001751
ORF1ab/nsp31465T1465IaCtaTt11B.1.36.360.000602
ORF1ab/nsp31465T1465IaCtaTt11B.1.36.70.004
ORF1ab/nsp31465T1465IaCtaTt11B.1.3670.000792
ORF1ab/nsp31465T1465IaCtaTt11B.1.3690.000285
ORF1ab/nsp31465T1465IaCtaTt11B.1.3890.001002
ORF1ab/nsp31465T1465IaCtaTt11B.1.3960.000706
ORF1ab/nsp31465T1465TacTacC11B.1.3990.001934
ORF1ab/nsp31465T1465AActGct11B.1.4000.000429
ORF1ab/nsp31465T1465delACT---11B.1.4110.003704
ORF1ab/nsp31465T1465delACT---11B.1.4150.014286
ORF1ab/nsp31465T1465AActGct11B.1.4160.001269
ORF1ab/nsp31465T1465delACT---11B.1.416.10.001563
ORF1ab/nsp31465T1465del1acTac-11B.1.4220.000812
ORF1ab/nsp31465T1465TacTacG11B.1.4270.00005
ORF1ab/nsp31465T1465AActGct11B.1.4270.00005
ORF1ab/nsp31465T1465delACT---11B.1.4290.000024
ORF1ab/nsp31465T1465IaCtaTt11B.1.438.10.000107
ORF1ab/nsp31465T1465TacTacA11B.1.4560.003268
ORF1ab/nsp31465T1465IaCtaTt11B.1.4650.003802
ORF1ab/nsp31465T1465IaCtaTt11B.1.466.10.007194
ORF1ab/nsp31465T1465TacTacG11B.1.466.20.000391
ORF1ab/nsp31465T1465IaCtaTt11B.1.4670.04
ORF1ab/nsp31465T1465IaCtaTt11B.1.4680.005714
ORF1ab/nsp31465T1465IaCtaTt11B.1.4710.002732
ORF1ab/nsp31465T1465IaCtaTt11B.1.4780.011765
ORF1ab/nsp31465T1465IaCtaTt11B.1.4970.000315
ORF1ab/nsp31465T1465delACT---11B.1.5170.000427
ORF1ab/nsp31465T1465IaCtaTt11B.1.5230.002451
ORF1ab/nsp31465T1465IaCtaTt11B.1.5510.00129
ORF1ab/nsp31465T1465IaCtaTt11B.1.5620.018519
ORF1ab/nsp31465T1465IaCtaTt11B.1.564.10.001577
ORF1ab/nsp31465T1465delACT---11B.1.5770.000687
ORF1ab/nsp31465T1465IaCtaTt11B.1.596.10.009346
ORF1ab/nsp31465T1465IaCtaTt11B.1.6030.010638
ORF1ab/nsp31465T1465DACtGAt11B.1.617.20.000004
ORF1ab/nsp31465T1465IaCtaTt11B.1.617.30.002985
ORF1ab/nsp31465T1465IaCtaTt11B.1.6180.004032
ORF1ab/nsp31465T1465IaCtaTt11B.1.6200.000946
ORF1ab/nsp31465T1465AActGct11B.1.6210.000089
ORF1ab/nsp31465T1465IaCtaTt11B.1.6280.000352
ORF1ab/nsp31465T1465IaCtaTt11B.1.88.10.004808
ORF1ab/nsp31465T1465IaCtaTt11B.310.003731
ORF1ab/nsp31465T1465delACT---11B.340.013699
ORF1ab/nsp31465T1465IaCtaTt11B.550.00295
ORF1ab/nsp31465T1465IaCtaTt11B.6.60.000889
ORF1ab/nsp31465T1465IaCtaTt11C.120.007194
ORF1ab/nsp31465T1465IaCtaTt11C.350.000774
ORF1ab/nsp31465T1465TacTacA11C.370.000116
ORF1ab/nsp31465T1465SaCtaGt11D.20.000075
ORF1ab/nsp31465T1465IaCtaTt11N.10.016949
ORF1ab/nsp31465T1465AActGct11N.50.001767
ORF1ab/nsp31465T1465AActGct11P.10.000016
ORF1ab/nsp31465T1465SaCtaGt11P.10.000016
ORF1ab/nsp31465T1465IaCtaTt11P.1.120.000484
ORF1ab/nsp31465T1465delACT---11P.1.150.000232
ORF1ab/nsp31465T1465TacTacA11P.1.170.000162
ORF1ab/nsp31465T1465AActGct11P.1.20.001156
ORF1ab/nsp31465T1465IaCtaTt11P.1.20.001156
ORF1ab/nsp31465T1465IaCtaTt11P.1.60.001946
ORF1ab/nsp31465T1465IaCtaTt11P.1.80.004785
ORF1ab/nsp31465T1465NaCtaAt11P.20.000187
ORF1ab/nsp31465T1465TacTacC11Q.70.001111
ORF1ab/nsp31465T1465delACT---11Q.80.000165