CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1463

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31463Y1463YY2281YsyntaCtaT3082308217106-7108
ORF1ab/nsp31463Y1463HY2281HnonsynTacCac38638617106-7108
ORF1ab/nsp31463Y1463delY2281deldelTAC---17217217106-7108
ORF1ab/nsp31463Y1463DY2281DnonsynTacGac12812817106-7108
ORF1ab/nsp31463Y1463NY2281NnonsynTacAac34330.9705887106-7108
ORF1ab/nsp31463Y1463NY2281NnonsynTaCAaT3410.02941187106-7108
ORF1ab/nsp31463Y1463CY2281CnonsyntActGc30290.9666677106-7108
ORF1ab/nsp31463Y1463CY2281CnonsyntACtGT3010.03333337106-7108
ORF1ab/nsp31463Y1463SY2281SnonsyntActCc650.8333337106-7108
ORF1ab/nsp31463Y1463XY2281XnonsyntaCtaA630.57106-7108
ORF1ab/nsp31463Y1463XY2281XnonsyntaCtaG630.57106-7108
ORF1ab/nsp31463Y1463SY2281SnonsynTACAGT610.1666677106-7108
ORF1ab/nsp31463Y1463FY2281FnonsyntActTc530.67106-7108
ORF1ab/nsp31463Y1463FY2281FnonsyntACtTT520.47106-7108
ORF1ab/nsp31463Y1463del2Y2281del2deltACt--430.757106-7108
ORF1ab/nsp31463Y1463IY2281InonsynTACATT430.757106-7108
ORF1ab/nsp31463Y1463del2Y2281del2delTAc--c410.257106-7108
ORF1ab/nsp31463Y1463IY2281InonsynTACATA410.257106-7108
ORF1ab/nsp31463Y1463del1Y2281del1deltaCta-320.6666677106-7108
ORF1ab/nsp31463Y1463del1Y2281del1deltAct-c310.3333337106-7108
ORF1ab/nsp31463Y1463AY2281AnonsynTACGCA210.57106-7108
ORF1ab/nsp31463Y1463AY2281AnonsynTAcGCc210.57106-7108
ORF1ab/nsp31463Y1463LY2281LnonsyntACtTA1117106-7108
ORF1ab/nsp31463Y1463KY2281KnonsynTaCAaA1117106-7108
ORF1ab/nsp31463Y1463PY2281PnonsynTAcCCc1117106-7108
ORF1ab/nsp31463Y1463QY2281QnonsynTaCCaA1117106-7108
ORF1ab/nsp31463Y1463TY2281TnonsynTAcACc1117106-7108

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31463Y1463YtaCtaT30823082All0.000589
ORF1ab/nsp31463Y1463YtaCtaT865865AY.430.003832
ORF1ab/nsp31463Y1463YtaCtaT799799B.1.1.70.000715
ORF1ab/nsp31463Y1463YtaCtaT752752B.1.617.20.002832
ORF1ab/nsp31463Y1463HTacCac386386All0.000074
ORF1ab/nsp31463Y1463delTAC---172172All0.000033
ORF1ab/nsp31463Y1463DTacGac128128All0.000024
ORF1ab/nsp31463Y1463HTacCac9696AY.9.20.003526
ORF1ab/nsp31463Y1463HTacCac7676B.1.2340.010028
ORF1ab/nsp31463Y1463YtaCtaT6464AY.1030.000397
ORF1ab/nsp31463Y1463YtaCtaT5959AY.40.000092
ORF1ab/nsp31463Y1463YtaCtaT5757B.1.243.20.826087
ORF1ab/nsp31463Y1463DTacGac5656B.1.1.70.00005
ORF1ab/nsp31463Y1463delTAC---5151B.1.1.70.000046
ORF1ab/nsp31463Y1463HTacCac4747AY.250.000283
ORF1ab/nsp31463Y1463DTacGac4242AZ.20.034483
ORF1ab/nsp31463Y1463YtaCtaT3939AY.4.20.000846
ORF1ab/nsp31463Y1463NTacAac3334All0.000006
ORF1ab/nsp31463Y1463NTaCAaT134All0
ORF1ab/nsp31463Y1463YtaCtaT3131AY.46.40.0051
ORF1ab/nsp31463Y1463CtActGc2930All0.000006
ORF1ab/nsp31463Y1463CtACtGT130All0
ORF1ab/nsp31463Y1463YtaCtaT2727B.1.1.3150.228814
ORF1ab/nsp31463Y1463YtaCtaT2626B.1.1.2970.058166
ORF1ab/nsp31463Y1463YtaCtaT2525AY.1020.000663
ORF1ab/nsp31463Y1463YtaCtaT2323B.1.36.290.011899
ORF1ab/nsp31463Y1463YtaCtaT2121AY.440.000128
ORF1ab/nsp31463Y1463YtaCtaT2020AY.260.000566
ORF1ab/nsp31463Y1463HTacCac2020B.1.20.000176
ORF1ab/nsp31463Y1463YtaCtaT2020B.1.5260.00047
ORF1ab/nsp31463Y1463delTAC---1919B.1.1770.00025
ORF1ab/nsp31463Y1463HTacCac1919B.1.4290.000447
ORF1ab/nsp31463Y1463NTacAac1516B.1.1.70.000013
ORF1ab/nsp31463Y1463NTaCAaT116B.1.1.70.000001
ORF1ab/nsp31463Y1463HTacCac1616B.1.617.20.00006
ORF1ab/nsp31463Y1463YtaCtaT1515A.2.50.007485
ORF1ab/nsp31463Y1463YtaCtaT1515B.1.5960.001307
ORF1ab/nsp31463Y1463HTacCac1414R.10.00126
ORF1ab/nsp31463Y1463NTacAac1313AZ.20.010673
ORF1ab/nsp31463Y1463HTacCac1313B.1.1.70.000012
ORF1ab/nsp31463Y1463YtaCtaT1313B.1.1770.000171
ORF1ab/nsp31463Y1463YtaCtaT1313P.10.000205
ORF1ab/nsp31463Y1463DTacGac1212B.1.617.20.000045
ORF1ab/nsp31463Y1463delTAC---1111AY.40.000017
ORF1ab/nsp31463Y1463HTacCac1111AY.430.000049
ORF1ab/nsp31463Y1463YtaCtaT1111B.10.000101
ORF1ab/nsp31463Y1463YtaCtaT1010AY.540.000953
ORF1ab/nsp31463Y1463YtaCtaT99B.1.20.000079
ORF1ab/nsp31463Y1463HTacCac88AY.1110.001465
ORF1ab/nsp31463Y1463YtaCtaT88AY.1200.000297
ORF1ab/nsp31463Y1463YtaCtaT88B.1.1.2220.001632
ORF1ab/nsp31463Y1463YtaCtaT77AY.30.00007
ORF1ab/nsp31463Y1463YtaCtaT77B.1.10.000127
ORF1ab/nsp31463Y1463StActCc56All0.000001
ORF1ab/nsp31463Y1463XtaCtaG36All0.000001
ORF1ab/nsp31463Y1463XtaCtaA36All0.000001
ORF1ab/nsp31463Y1463STACAGT16All0
ORF1ab/nsp31463Y1463YtaCtaT66AY.1000.000276
ORF1ab/nsp31463Y1463HTacCac66AY.130.000966
ORF1ab/nsp31463Y1463YtaCtaT66AY.250.000036
ORF1ab/nsp31463Y1463YtaCtaT66AY.390.000148
ORF1ab/nsp31463Y1463CtActGc66AY.40.000009
ORF1ab/nsp31463Y1463HTacCac66B.1.10.000109
ORF1ab/nsp31463Y1463CtActGc66B.1.5610.002382
ORF1ab/nsp31463Y1463YtaCtaT66Q.10.000758
ORF1ab/nsp31463Y1463FtActTc35All0.000001
ORF1ab/nsp31463Y1463FtACtTT25All0
ORF1ab/nsp31463Y1463HTacCac55AY.1030.000031
ORF1ab/nsp31463Y1463YtaCtaT55AY.200.000194
ORF1ab/nsp31463Y1463delTAC---55AY.4.50.000537
ORF1ab/nsp31463Y1463YtaCtaT55AY.420.000201
ORF1ab/nsp31463Y1463YtaCtaT55AY.450.000608
ORF1ab/nsp31463Y1463YtaCtaT55AY.460.00052
ORF1ab/nsp31463Y1463YtaCtaT55AZ.20.004105
ORF1ab/nsp31463Y1463delTAC---55B.10.000046
ORF1ab/nsp31463Y1463HTacCac55B.10.000046
ORF1ab/nsp31463Y1463delTAC---55B.1.10.000091
ORF1ab/nsp31463Y1463HTacCac55B.1.1770.000066
ORF1ab/nsp31463Y1463YtaCtaT55B.1.4000.002145
ORF1ab/nsp31463Y1463delTAC---440.222222
ORF1ab/nsp31463Y1463del2tACt--34All0.000001
ORF1ab/nsp31463Y1463ITACATT34All0.000001
ORF1ab/nsp31463Y1463del2TAc--c14All0
ORF1ab/nsp31463Y1463ITACATA14All0
ORF1ab/nsp31463Y1463YtaCtaT44AY.1210.000541
ORF1ab/nsp31463Y1463HTacCac44AY.40.000006
ORF1ab/nsp31463Y1463delTAC---44B.1.1.2180.030769
ORF1ab/nsp31463Y1463YtaCtaT44B.1.1.3060.001754
ORF1ab/nsp31463Y1463ITACATT34B.1.1.70.000003
ORF1ab/nsp31463Y1463ITACATA14B.1.1.70.000001
ORF1ab/nsp31463Y1463CtActGc44B.1.1770.000053
ORF1ab/nsp31463Y1463YtaCtaT44B.1.6280.001409
ORF1ab/nsp31463Y1463delTAC---33AD.20.000657
ORF1ab/nsp31463Y1463del1taCta-23All0
ORF1ab/nsp31463Y1463del1tAct-c13All0
ORF1ab/nsp31463Y1463HTacCac33AY.1190.000106
ORF1ab/nsp31463Y1463YtaCtaT33AY.1190.000106
ORF1ab/nsp31463Y1463YtaCtaT33AY.340.000291
ORF1ab/nsp31463Y1463delTAC---33AY.430.000013
ORF1ab/nsp31463Y1463HTacCac33AY.440.000018
ORF1ab/nsp31463Y1463YtaCtaT33B.1.1.2840.000322
ORF1ab/nsp31463Y1463HTacCac33B.1.1.5190.000119
ORF1ab/nsp31463Y1463StActCc33B.1.1.70.000003
ORF1ab/nsp31463Y1463FtACtTT23B.1.1.70.000002
ORF1ab/nsp31463Y1463FtActTc13B.1.1.70.000001
ORF1ab/nsp31463Y1463YtaCtaT33B.1.4290.000071
ORF1ab/nsp31463Y1463delTAC---33B.1.617.20.000011
ORF1ab/nsp31463Y1463DTacGac33C.36.30.001702
ORF1ab/nsp31463Y1463DTacGac33Q.40.001364
ORF1ab/nsp31463Y1463ATAcGCc12All0
ORF1ab/nsp31463Y1463ATACGCA12All0
ORF1ab/nsp31463Y1463YtaCtaT22AY.1100.000225
ORF1ab/nsp31463Y1463YtaCtaT22AY.1110.000366
ORF1ab/nsp31463Y1463YtaCtaT22AY.1130.000285
ORF1ab/nsp31463Y1463YtaCtaT22AY.1160.000574
ORF1ab/nsp31463Y1463HTacCac22AY.1170.000169
ORF1ab/nsp31463Y1463YtaCtaT22AY.1180.000125
ORF1ab/nsp31463Y1463delTAC---22AY.250.000012
ORF1ab/nsp31463Y1463YtaCtaT22AY.290.000032
ORF1ab/nsp31463Y1463HTacCac22AY.740.000231
ORF1ab/nsp31463Y1463CtActGc22B.1.1.280.000622
ORF1ab/nsp31463Y1463HTacCac22B.1.1.3120.003824
ORF1ab/nsp31463Y1463DTacGac22B.1.1.5230.003125
ORF1ab/nsp31463Y1463CtActGc22B.1.1.70.000002
ORF1ab/nsp31463Y1463del1taCta-22B.1.1.70.000002
ORF1ab/nsp31463Y1463delTAC---22B.1.1.700.000682
ORF1ab/nsp31463Y1463delTAC---22B.1.177.210.000153
ORF1ab/nsp31463Y1463YtaCtaT22B.1.177.540.001213
ORF1ab/nsp31463Y1463delTAC---22B.1.177.620.002384
ORF1ab/nsp31463Y1463YtaCtaT22B.1.177.860.000367
ORF1ab/nsp31463Y1463delTAC---22B.1.2210.000142
ORF1ab/nsp31463Y1463CtActGc22B.1.360.000292
ORF1ab/nsp31463Y1463YtaCtaT22B.1.4270.000101
ORF1ab/nsp31463Y1463delTAC---22B.1.6210.000177
ORF1ab/nsp31463Y1463delTAC---22C.350.001548
ORF1ab/nsp31463Y1463YtaCtaT22C.370.000232
ORF1ab/nsp31463Y1463DTacGac22P.10.000032
ORF1ab/nsp31463Y1463delTAC---22P.10.000032
ORF1ab/nsp31463Y1463delTAC---22U.30.007722
ORF1ab/nsp31463Y1463ATACGCA11A.2.40.003367
ORF1ab/nsp31463Y1463TTAcACc11All0
ORF1ab/nsp31463Y1463PTAcCCc11All0
ORF1ab/nsp31463Y1463QTaCCaA11All0
ORF1ab/nsp31463Y1463LtACtTA11All0
ORF1ab/nsp31463Y1463KTaCAaA11All0
ORF1ab/nsp31463Y1463HTacCac11AY.1000.000046
ORF1ab/nsp31463Y1463del2tACt--11AY.1010.00049
ORF1ab/nsp31463Y1463delTAC---11AY.1020.000027
ORF1ab/nsp31463Y1463HTacCac11AY.1020.000027
ORF1ab/nsp31463Y1463delTAC---11AY.1030.000006
ORF1ab/nsp31463Y1463HTacCac11AY.1070.000466
ORF1ab/nsp31463Y1463YtaCtaT11AY.1170.000085
ORF1ab/nsp31463Y1463StActCc11AY.1180.000063
ORF1ab/nsp31463Y1463ATAcGCc11AY.1180.000063
ORF1ab/nsp31463Y1463DTacGac11AY.1180.000063
ORF1ab/nsp31463Y1463delTAC---11AY.1190.000035
ORF1ab/nsp31463Y1463HTacCac11AY.120.000316
ORF1ab/nsp31463Y1463HTacCac11AY.140.000088
ORF1ab/nsp31463Y1463HTacCac11AY.16.10.00047
ORF1ab/nsp31463Y1463YtaCtaT11AY.23.10.000417
ORF1ab/nsp31463Y1463XtaCtaA11AY.250.000006
ORF1ab/nsp31463Y1463HTacCac11AY.29.10.000221
ORF1ab/nsp31463Y1463YtaCtaT11AY.3.10.000085
ORF1ab/nsp31463Y1463YtaCtaT11AY.330.000067
ORF1ab/nsp31463Y1463CtActGc11AY.390.000025
ORF1ab/nsp31463Y1463HTacCac11AY.39.10.00004
ORF1ab/nsp31463Y1463del2TAc--c11AY.40.000002
ORF1ab/nsp31463Y1463DTacGac11AY.40.000002
ORF1ab/nsp31463Y1463NTacAac11AY.40.000002
ORF1ab/nsp31463Y1463FtActTc11AY.430.000004
ORF1ab/nsp31463Y1463XtaCtaG11AY.430.000004
ORF1ab/nsp31463Y1463del2tACt--11AY.430.000004
ORF1ab/nsp31463Y1463delTAC---11AY.440.000006
ORF1ab/nsp31463Y1463HTacCac11AY.450.000122
ORF1ab/nsp31463Y1463CtActGc11AY.460.000104
ORF1ab/nsp31463Y1463YtaCtaT11AY.46.60.000072
ORF1ab/nsp31463Y1463YtaCtaT11AY.470.000031
ORF1ab/nsp31463Y1463delTAC---11AY.50.000021
ORF1ab/nsp31463Y1463YtaCtaT11AY.5.30.000337
ORF1ab/nsp31463Y1463YtaCtaT11AY.5.40.000277
ORF1ab/nsp31463Y1463YtaCtaT11AY.570.000656
ORF1ab/nsp31463Y1463YtaCtaT11AY.60.000041
ORF1ab/nsp31463Y1463delTAC---11AY.60.000041
ORF1ab/nsp31463Y1463delTAC---11AY.600.000938
ORF1ab/nsp31463Y1463YtaCtaT11AY.610.000105
ORF1ab/nsp31463Y1463HTacCac11AY.660.00107
ORF1ab/nsp31463Y1463YtaCtaT11AY.710.000475
ORF1ab/nsp31463Y1463DTacGac11AY.75.10.00018
ORF1ab/nsp31463Y1463YtaCtaT11AY.820.001357
ORF1ab/nsp31463Y1463delTAC---11AY.90.000068
ORF1ab/nsp31463Y1463YtaCtaT11AY.90.000068
ORF1ab/nsp31463Y1463YtaCtaT11AY.9.10.000084
ORF1ab/nsp31463Y1463CtActGc11AY.920.000287
ORF1ab/nsp31463Y1463HTacCac11AY.920.000287
ORF1ab/nsp31463Y1463YtaCtaT11AY.930.000273
ORF1ab/nsp31463Y1463YtaCtaT11AY.950.000761
ORF1ab/nsp31463Y1463YtaCtaT11AY.99.20.000092
ORF1ab/nsp31463Y1463delTAC---11B0.000128
ORF1ab/nsp31463Y1463XtaCtaG11B.10.000009
ORF1ab/nsp31463Y1463StActCc11B.10.000009
ORF1ab/nsp31463Y1463del2tACt--11B.10.000009
ORF1ab/nsp31463Y1463DTacGac11B.10.000009
ORF1ab/nsp31463Y1463FtActTc11B.1.10.000018
ORF1ab/nsp31463Y1463delTAC---11B.1.1.1590.004673
ORF1ab/nsp31463Y1463YtaCtaT11B.1.1.1740.003378
ORF1ab/nsp31463Y1463YtaCtaT11B.1.1.2550.00303
ORF1ab/nsp31463Y1463YtaCtaT11B.1.1.2680.014925
ORF1ab/nsp31463Y1463delTAC---11B.1.1.3050.003861
ORF1ab/nsp31463Y1463HTacCac11B.1.1.3090.005848
ORF1ab/nsp31463Y1463delTAC---11B.1.1.3110.000358
ORF1ab/nsp31463Y1463delTAC---11B.1.1.3120.001912
ORF1ab/nsp31463Y1463DTacGac11B.1.1.3180.000302
ORF1ab/nsp31463Y1463YtaCtaT11B.1.1.3440.010753
ORF1ab/nsp31463Y1463delTAC---11B.1.1.370.000193
ORF1ab/nsp31463Y1463delTAC---11B.1.1.460.004367
ORF1ab/nsp31463Y1463delTAC---11B.1.1.4640.001473
ORF1ab/nsp31463Y1463YtaCtaT11B.1.1.4670.019231
ORF1ab/nsp31463Y1463HTacCac11B.1.1.5130.012346
ORF1ab/nsp31463Y1463YtaCtaT11B.1.1.5190.00004
ORF1ab/nsp31463Y1463YtaCtaT11B.1.1.540.003021
ORF1ab/nsp31463Y1463LtACtTA11B.1.1.70.000001
ORF1ab/nsp31463Y1463PTAcCCc11B.1.1.70.000001
ORF1ab/nsp31463Y1463KTaCAaA11B.1.1.70.000001
ORF1ab/nsp31463Y1463XtaCtaA11B.1.1.70.000001
ORF1ab/nsp31463Y1463YtaCtaT11B.1.1040.00369
ORF1ab/nsp31463Y1463HTacCac11B.1.1100.004525
ORF1ab/nsp31463Y1463delTAC---11B.1.1600.000031
ORF1ab/nsp31463Y1463NTacAac11B.1.160.290.004219
ORF1ab/nsp31463Y1463delTAC---11B.1.160.70.002079
ORF1ab/nsp31463Y1463delTAC---11B.1.177.100.000878
ORF1ab/nsp31463Y1463delTAC---11B.1.177.110.001698
ORF1ab/nsp31463Y1463delTAC---11B.1.177.150.000631
ORF1ab/nsp31463Y1463delTAC---11B.1.177.160.000664
ORF1ab/nsp31463Y1463HTacCac11B.1.177.210.000076
ORF1ab/nsp31463Y1463YtaCtaT11B.1.177.210.000076
ORF1ab/nsp31463Y1463delTAC---11B.1.177.530.002392
ORF1ab/nsp31463Y1463delTAC---11B.1.177.540.000606
ORF1ab/nsp31463Y1463YtaCtaT11B.1.177.560.000668
ORF1ab/nsp31463Y1463DTacGac11B.1.177.560.000668
ORF1ab/nsp31463Y1463delTAC---11B.1.177.570.000281
ORF1ab/nsp31463Y1463delTAC---11B.1.177.60.000977
ORF1ab/nsp31463Y1463NTacAac11B.1.177.70.000165
ORF1ab/nsp31463Y1463YtaCtaT11B.1.177.720.00339
ORF1ab/nsp31463Y1463YtaCtaT11B.1.177.820.000477
ORF1ab/nsp31463Y1463delTAC---11B.1.177.90.001332
ORF1ab/nsp31463Y1463CtActGc11B.1.20.000009
ORF1ab/nsp31463Y1463delTAC---11B.1.20.000009
ORF1ab/nsp31463Y1463YtaCtaT11B.1.2370.004975
ORF1ab/nsp31463Y1463YtaCtaT11B.1.2390.001221
ORF1ab/nsp31463Y1463YtaCtaT11B.1.2400.000216
ORF1ab/nsp31463Y1463delTAC---11B.1.2580.000067
ORF1ab/nsp31463Y1463DTacGac11B.1.2580.000067
ORF1ab/nsp31463Y1463HTacCac11B.1.2580.000067
ORF1ab/nsp31463Y1463YtaCtaT11B.1.258.170.000104
ORF1ab/nsp31463Y1463XtaCtaA11B.1.258.30.001675
ORF1ab/nsp31463Y1463delTAC---11B.1.2650.001271
ORF1ab/nsp31463Y1463YtaCtaT11B.1.2700.005618
ORF1ab/nsp31463Y1463DTacGac11B.1.3510.00003
ORF1ab/nsp31463Y1463TTAcACc11B.1.3510.00003
ORF1ab/nsp31463Y1463HTacCac11B.1.3510.00003
ORF1ab/nsp31463Y1463YtaCtaT11B.1.3510.00003
ORF1ab/nsp31463Y1463YtaCtaT11B.1.36.160.001425
ORF1ab/nsp31463Y1463delTAC---11B.1.36.170.000494
ORF1ab/nsp31463Y1463XtaCtaG11B.1.36.290.000517
ORF1ab/nsp31463Y1463HTacCac11B.1.36.390.002217
ORF1ab/nsp31463Y1463CtActGc11B.1.3990.001934
ORF1ab/nsp31463Y1463delTAC---11B.1.4110.003704
ORF1ab/nsp31463Y1463delTAC---11B.1.4150.014286
ORF1ab/nsp31463Y1463delTAC---11B.1.416.10.001563
ORF1ab/nsp31463Y1463delTAC---11B.1.5260.000024
ORF1ab/nsp31463Y1463del1tAct-c11B.1.5610.000397
ORF1ab/nsp31463Y1463delTAC---11B.1.5770.000687
ORF1ab/nsp31463Y1463YtaCtaT11B.1.5870.001898
ORF1ab/nsp31463Y1463CtActGc11B.1.5960.000087
ORF1ab/nsp31463Y1463delTAC---11B.1.5960.000087
ORF1ab/nsp31463Y1463NTacAac11B.1.617.20.000004
ORF1ab/nsp31463Y1463STACAGT11B.1.617.20.000004
ORF1ab/nsp31463Y1463CtACtGT11B.1.617.20.000004
ORF1ab/nsp31463Y1463delTAC---11B.340.013699
ORF1ab/nsp31463Y1463HTacCac11B.390.002331
ORF1ab/nsp31463Y1463QTaCCaA11C.350.000774
ORF1ab/nsp31463Y1463YtaCtaT11D.20.000075
ORF1ab/nsp31463Y1463CtActGc11D.20.000075
ORF1ab/nsp31463Y1463YtaCtaT11N.50.001767
ORF1ab/nsp31463Y1463HTacCac11P.10.000016
ORF1ab/nsp31463Y1463delTAC---11P.1.150.000232
ORF1ab/nsp31463Y1463NTacAac11P.1.160.000374
ORF1ab/nsp31463Y1463delTAC---11Q.80.000165
ORF1ab/nsp31463Y1463delTAC---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.