CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1450

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31450E1450DE2268DnonsyngaAgaC111810710.9579617067-7069
ORF1ab/nsp31450E1450DE2268DnonsyngaAgaT1118470.04203947067-7069
ORF1ab/nsp31450E1450KE2268KnonsynGaaAaa60160117067-7069
ORF1ab/nsp31450E1450EE2268EsyngaAgaG30730717067-7069
ORF1ab/nsp31450E1450GE2268GnonsyngAagGa2872860.9965167067-7069
ORF1ab/nsp31450E1450GE2268GnonsyngAAgGG28710.003484327067-7069
ORF1ab/nsp31450E1450AE2268AnonsyngAagCa2242230.9955367067-7069
ORF1ab/nsp31450E1450AE2268AnonsyngAAgCT22410.004464297067-7069
ORF1ab/nsp31450E1450XE2268XnonsynGaaTaa14414417067-7069
ORF1ab/nsp31450E1450delE2268deldelGAA---12512517067-7069
ORF1ab/nsp31450E1450QE2268QnonsynGaaCaa575717067-7069
ORF1ab/nsp31450E1450VE2268VnonsyngAagTa181817067-7069
ORF1ab/nsp31450E1450del1E2268del1delGaa-aa740.5714297067-7069
ORF1ab/nsp31450E1450del1E2268del1delgAag-a720.2857147067-7069
ORF1ab/nsp31450E1450del1E2268del1delgAAg-N710.1428577067-7069
ORF1ab/nsp31450E1450del2E2268del2delGAa--a3317067-7069
ORF1ab/nsp31450E1450RE2268RnonsynGAaAGa2217067-7069

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31450E1450DgaAgaC10711118All0.000205
ORF1ab/nsp31450E1450DgaAgaT471118All0.000009
ORF1ab/nsp31450E1450DgaAgaC898898Q.70.997778
ORF1ab/nsp31450E1450KGaaAaa601601All0.000115
ORF1ab/nsp31450E1450KGaaAaa357357B.1.1.70.00032
ORF1ab/nsp31450E1450EgaAgaG307307All0.000059
ORF1ab/nsp31450E1450GgAagGa286287All0.000055
ORF1ab/nsp31450E1450GgAAgGG1287All0
ORF1ab/nsp31450E1450AgAagCa223224All0.000043
ORF1ab/nsp31450E1450AgAAgCT1224All0
ORF1ab/nsp31450E1450AgAagCa177177AY.40.000275
ORF1ab/nsp31450E1450XGaaTaa144144All0.000028
ORF1ab/nsp31450E1450delGAA---125125All0.000024
ORF1ab/nsp31450E1450GgAagGa8383AY.250.000499
ORF1ab/nsp31450E1450EgaAgaG6868B.1.1.70.000061
ORF1ab/nsp31450E1450QGaaCaa5757All0.000011
ORF1ab/nsp31450E1450delGAA---4848B.1.1.70.000043
ORF1ab/nsp31450E1450EgaAgaG3838B.1.20.000335
ORF1ab/nsp31450E1450GgAagGa3232B.1.1770.000421
ORF1ab/nsp31450E1450GgAagGa3131B.1.1.70.000028
ORF1ab/nsp31450E1450KGaaAaa2929B.1.617.20.000109
ORF1ab/nsp31450E1450KGaaAaa2525P.10.000394
ORF1ab/nsp31450E1450EgaAgaG2424B.1.2430.00167
ORF1ab/nsp31450E1450GgAagGa2323B.1.3570.219048
ORF1ab/nsp31450E1450EgaAgaG2121AY.40.000033
ORF1ab/nsp31450E1450DgaAgaT1120B.1.1.70.00001
ORF1ab/nsp31450E1450DgaAgaC920B.1.1.70.000008
ORF1ab/nsp31450E1450GgAagGa1919AY.40.00003
ORF1ab/nsp31450E1450DgaAgaC1519B.1.1770.000198
ORF1ab/nsp31450E1450DgaAgaT419B.1.1770.000053
ORF1ab/nsp31450E1450KGaaAaa1919B.1.20.000167
ORF1ab/nsp31450E1450VgAagTa1818All0.000003
ORF1ab/nsp31450E1450KGaaAaa1818AY.40.000028
ORF1ab/nsp31450E1450XGaaTaa1818AY.40.000028
ORF1ab/nsp31450E1450XGaaTaa1818B.1.1.70.000016
ORF1ab/nsp31450E1450KGaaAaa1616B.1.5960.001394
ORF1ab/nsp31450E1450DgaAgaC1415B.1.1600.000437
ORF1ab/nsp31450E1450DgaAgaT115B.1.1600.000031
ORF1ab/nsp31450E1450DgaAgaC1515B.1.177.440.007784
ORF1ab/nsp31450E1450XGaaTaa1515B.60.013649
ORF1ab/nsp31450E1450QGaaCaa1414B.1.1.70.000013
ORF1ab/nsp31450E1450GgAagGa1414B.1.617.20.000053
ORF1ab/nsp31450E1450delGAA---1212B.1.1770.000158
ORF1ab/nsp31450E1450DgaAgaT812B.1.617.20.00003
ORF1ab/nsp31450E1450DgaAgaC412B.1.617.20.000015
ORF1ab/nsp31450E1450QGaaCaa1111AY.40.000017
ORF1ab/nsp31450E1450XGaaTaa1111B.10.000101
ORF1ab/nsp31450E1450GgAagGa1011B.1.20.000088
ORF1ab/nsp31450E1450GgAAgGG111B.1.20.000009
ORF1ab/nsp31450E1450DgaAgaC510AY.40.000008
ORF1ab/nsp31450E1450DgaAgaT510AY.40.000008
ORF1ab/nsp31450E1450EgaAgaG1010AY.430.000044
ORF1ab/nsp31450E1450EgaAgaG1010B.10.000092
ORF1ab/nsp31450E1450KGaaAaa1010B.10.000092
ORF1ab/nsp31450E1450KGaaAaa1010B.1.1.5190.000397
ORF1ab/nsp31450E1450delGAA---99AY.40.000014
ORF1ab/nsp31450E1450DgaAgaC89B.1.10.000145
ORF1ab/nsp31450E1450DgaAgaT19B.1.10.000018
ORF1ab/nsp31450E1450DgaAgaC99B.1.2210.000639
ORF1ab/nsp31450E1450EgaAgaG99B.1.258.170.000936
ORF1ab/nsp31450E1450XGaaTaa99B.6.60.008
ORF1ab/nsp31450E1450QGaaCaa88AY.470.000249
ORF1ab/nsp31450E1450EgaAgaG88B.1.10.000145
ORF1ab/nsp31450E1450EgaAgaG88B.1.1600.00025
ORF1ab/nsp31450E1450del1Gaa-aa47All0.000001
ORF1ab/nsp31450E1450del1gAag-a27All0
ORF1ab/nsp31450E1450del1gAAg-N17All0
ORF1ab/nsp31450E1450KGaaAaa77AY.250.000042
ORF1ab/nsp31450E1450AgAagCa77AY.60.000288
ORF1ab/nsp31450E1450KGaaAaa77AY.980.000553
ORF1ab/nsp31450E1450GgAagGa77B.10.000064
ORF1ab/nsp31450E1450EgaAgaG77B.1.1770.000092
ORF1ab/nsp31450E1450XGaaTaa77B.1.1770.000092
ORF1ab/nsp31450E1450DgaAgaC77B.1.177.430.01034
ORF1ab/nsp31450E1450GgAagGa77B.1.2340.000924
ORF1ab/nsp31450E1450delGAA---66B.10.000055
ORF1ab/nsp31450E1450GgAagGa66B.1.10.000109
ORF1ab/nsp31450E1450DgaAgaC66B.1.1.390.003058
ORF1ab/nsp31450E1450AgAagCa66B.1.1.70.000005
ORF1ab/nsp31450E1450DgaAgaC66B.1.160.160.005576
ORF1ab/nsp31450E1450XGaaTaa66B.1.20.000053
ORF1ab/nsp31450E1450KGaaAaa66B.1.4320.067416
ORF1ab/nsp31450E1450EgaAgaG66B.1.617.20.000023
ORF1ab/nsp31450E1450EgaAgaG66B.1.6370.000438
ORF1ab/nsp31450E1450KGaaAaa55AY.430.000022
ORF1ab/nsp31450E1450KGaaAaa55AY.440.00003
ORF1ab/nsp31450E1450DgaAgaC55B.10.000046
ORF1ab/nsp31450E1450KGaaAaa55B.1.10.000091
ORF1ab/nsp31450E1450DgaAgaC55B.1.1.700.001705
ORF1ab/nsp31450E1450DgaAgaC55B.1.160.110.028571
ORF1ab/nsp31450E1450DgaAgaC55B.1.2580.000333
ORF1ab/nsp31450E1450XGaaTaa55B.1.617.20.000019
ORF1ab/nsp31450E1450KGaaAaa44AY.30.00004
ORF1ab/nsp31450E1450delGAA---44AY.4.50.00043
ORF1ab/nsp31450E1450delGAA---44AY.430.000018
ORF1ab/nsp31450E1450EgaAgaG44AY.440.000024
ORF1ab/nsp31450E1450KGaaAaa44AY.530.00115
ORF1ab/nsp31450E1450DgaAgaC44B.1.160.150.019802
ORF1ab/nsp31450E1450KGaaAaa44B.1.1770.000053
ORF1ab/nsp31450E1450KGaaAaa44B.1.221.10.011628
ORF1ab/nsp31450E1450DgaAgaC44B.1.258.170.000416
ORF1ab/nsp31450E1450EgaAgaG44B.1.617.30.01194
ORF1ab/nsp31450E1450del2GAa--a33All0.000001
ORF1ab/nsp31450E1450QGaaCaa33AY.1200.000112
ORF1ab/nsp31450E1450DgaAgaT33AY.1210.000406
ORF1ab/nsp31450E1450EgaAgaG33AY.260.000085
ORF1ab/nsp31450E1450KGaaAaa33AY.290.000047
ORF1ab/nsp31450E1450EgaAgaG33AY.30.00003
ORF1ab/nsp31450E1450GgAagGa33AY.380.001498
ORF1ab/nsp31450E1450XGaaTaa33AY.440.000018
ORF1ab/nsp31450E1450EgaAgaG33AY.50.000062
ORF1ab/nsp31450E1450EgaAgaG33AY.740.000347
ORF1ab/nsp31450E1450XGaaTaa33B0.000383
ORF1ab/nsp31450E1450EgaAgaG33B.1.1.3060.001315
ORF1ab/nsp31450E1450AgAagCa33B.1.1.4530.025424
ORF1ab/nsp31450E1450DgaAgaC33B.1.160.290.012658
ORF1ab/nsp31450E1450DgaAgaC33B.1.160.320.012876
ORF1ab/nsp31450E1450QGaaCaa33B.1.1770.00004
ORF1ab/nsp31450E1450delGAA---33B.1.2210.000213
ORF1ab/nsp31450E1450EgaAgaG33B.1.3510.000089
ORF1ab/nsp31450E1450DgaAgaC33B.1.36.10.003421
ORF1ab/nsp31450E1450KGaaAaa33B.1.3690.000856
ORF1ab/nsp31450E1450AgAagCa33B.1.617.20.000011
ORF1ab/nsp31450E1450EgaAgaG33B.1.6210.000266
ORF1ab/nsp31450E1450KGaaAaa33C.370.000348
ORF1ab/nsp31450E1450GgAagGa33P.10.000047
ORF1ab/nsp31450E1450EgaAgaG33P.10.000047
ORF1ab/nsp31450E1450EgaAgaG33R.10.00027
ORF1ab/nsp31450E1450GgAagGa220.111111
ORF1ab/nsp31450E1450KGaaAaa220.111111
ORF1ab/nsp31450E1450delGAA---220.111111
ORF1ab/nsp31450E1450RGAaAGa220.111111
ORF1ab/nsp31450E1450del2GAa--a220.111111
ORF1ab/nsp31450E1450RGAaAGa22All0
ORF1ab/nsp31450E1450EgaAgaG22AY.1000.000092
ORF1ab/nsp31450E1450XGaaTaa22AY.1030.000012
ORF1ab/nsp31450E1450GgAagGa22AY.1030.000012
ORF1ab/nsp31450E1450AgAagCa22AY.1130.000285
ORF1ab/nsp31450E1450GgAagGa22AY.1190.000071
ORF1ab/nsp31450E1450GgAagGa22AY.200.000078
ORF1ab/nsp31450E1450AgAagCa22AY.250.000012
ORF1ab/nsp31450E1450DgaAgaC22AY.30.00002
ORF1ab/nsp31450E1450KGaaAaa22AY.360.000296
ORF1ab/nsp31450E1450GgAagGa22AY.360.000296
ORF1ab/nsp31450E1450QGaaCaa22AY.390.000049
ORF1ab/nsp31450E1450KGaaAaa22AY.4.20.000043
ORF1ab/nsp31450E1450EgaAgaG22AY.4.20.000043
ORF1ab/nsp31450E1450AgAagCa22AY.420.00008
ORF1ab/nsp31450E1450GgAagGa22AY.430.000009
ORF1ab/nsp31450E1450DgaAgaT22AY.440.000012
ORF1ab/nsp31450E1450QGaaCaa22AY.440.000012
ORF1ab/nsp31450E1450KGaaAaa22AY.470.000062
ORF1ab/nsp31450E1450KGaaAaa22AY.50.000041
ORF1ab/nsp31450E1450AgAagCa22AY.50.000041
ORF1ab/nsp31450E1450XGaaTaa22AY.5.30.000675
ORF1ab/nsp31450E1450EgaAgaG22AY.550.001835
ORF1ab/nsp31450E1450KGaaAaa22AY.75.10.000361
ORF1ab/nsp31450E1450KGaaAaa22AY.9.20.000073
ORF1ab/nsp31450E1450GgAagGa22AY.980.000158
ORF1ab/nsp31450E1450EgaAgaG22AY.980.000158
ORF1ab/nsp31450E1450QGaaCaa22B.1.10.000036
ORF1ab/nsp31450E1450XGaaTaa22B.1.10.000036
ORF1ab/nsp31450E1450XGaaTaa22B.1.1.2160.001781
ORF1ab/nsp31450E1450KGaaAaa22B.1.1.280.000622
ORF1ab/nsp31450E1450EgaAgaG22B.1.1.2910.001485
ORF1ab/nsp31450E1450KGaaAaa22B.1.1.4340.000697
ORF1ab/nsp31450E1450DgaAgaC22B.1.160.140.004237
ORF1ab/nsp31450E1450DgaAgaC22B.1.160.300.005952
ORF1ab/nsp31450E1450VgAagTa22B.1.1770.000026
ORF1ab/nsp31450E1450GgAagGa22B.1.177.80.001505
ORF1ab/nsp31450E1450DgaAgaC22B.1.177.810.000379
ORF1ab/nsp31450E1450AgAagCa22B.1.20.000018
ORF1ab/nsp31450E1450del1gAag-a12B.1.20.000009
ORF1ab/nsp31450E1450del1gAAg-N12B.1.20.000009
ORF1ab/nsp31450E1450DgaAgaC22B.1.4090.001563
ORF1ab/nsp31450E1450AgAagCa12B.1.4160.001269
ORF1ab/nsp31450E1450AgAAgCT12B.1.4160.001269
ORF1ab/nsp31450E1450KGaaAaa22B.1.4230.020408
ORF1ab/nsp31450E1450GgAagGa22B.1.5260.000047
ORF1ab/nsp31450E1450EgaAgaG22B.1.5300.014286
ORF1ab/nsp31450E1450XGaaTaa22B.1.5960.000174
ORF1ab/nsp31450E1450del1Gaa-aa22B.1.617.10.000258
ORF1ab/nsp31450E1450EgaAgaG22C.370.000232
ORF1ab/nsp31450E1450delGAA---22P.10.000032
ORF1ab/nsp31450E1450XGaaTaa11A0.000387
ORF1ab/nsp31450E1450GgAagGa11A0.000387
ORF1ab/nsp31450E1450EgaAgaG11A0.000387
ORF1ab/nsp31450E1450GgAagGa11A.10.000282
ORF1ab/nsp31450E1450EgaAgaG11A.2.50.000499
ORF1ab/nsp31450E1450delGAA---11AD.20.000219
ORF1ab/nsp31450E1450GgAagGa11AE.80.000489
ORF1ab/nsp31450E1450DgaAgaC11AN.10.02
ORF1ab/nsp31450E1450GgAagGa11AS.10.009524
ORF1ab/nsp31450E1450QGaaCaa11AY.1000.000046
ORF1ab/nsp31450E1450XGaaTaa11AY.1020.000027
ORF1ab/nsp31450E1450VgAagTa11AY.1030.000006
ORF1ab/nsp31450E1450EgaAgaG11AY.1030.000006
ORF1ab/nsp31450E1450KGaaAaa11AY.1030.000006
ORF1ab/nsp31450E1450delGAA---11AY.1030.000006
ORF1ab/nsp31450E1450KGaaAaa11AY.1130.000142
ORF1ab/nsp31450E1450KGaaAaa11AY.1160.000287
ORF1ab/nsp31450E1450VgAagTa11AY.1180.000063
ORF1ab/nsp31450E1450delGAA---11AY.1190.000035
ORF1ab/nsp31450E1450XGaaTaa11AY.1190.000035
ORF1ab/nsp31450E1450DgaAgaT11AY.1190.000035
ORF1ab/nsp31450E1450EgaAgaG11AY.120.000316
ORF1ab/nsp31450E1450EgaAgaG11AY.1200.000037
ORF1ab/nsp31450E1450XGaaTaa11AY.1200.000037
ORF1ab/nsp31450E1450GgAagGa11AY.1210.000135
ORF1ab/nsp31450E1450XGaaTaa11AY.1210.000135
ORF1ab/nsp31450E1450EgaAgaG11AY.130.000161
ORF1ab/nsp31450E1450XGaaTaa11AY.140.000088
ORF1ab/nsp31450E1450AgAagCa11AY.160.00038
ORF1ab/nsp31450E1450delGAA---11AY.190.00114
ORF1ab/nsp31450E1450EgaAgaG11AY.200.000039
ORF1ab/nsp31450E1450KGaaAaa11AY.200.000039
ORF1ab/nsp31450E1450AgAagCa11AY.200.000039
ORF1ab/nsp31450E1450XGaaTaa11AY.200.000039
ORF1ab/nsp31450E1450DgaAgaC11AY.230.00007
ORF1ab/nsp31450E1450KGaaAaa11AY.230.00007
ORF1ab/nsp31450E1450XGaaTaa11AY.250.000006
ORF1ab/nsp31450E1450EgaAgaG11AY.250.000006
ORF1ab/nsp31450E1450XGaaTaa11AY.260.000028
ORF1ab/nsp31450E1450XGaaTaa11AY.30.00001
ORF1ab/nsp31450E1450GgAagGa11AY.30.00001
ORF1ab/nsp31450E1450delGAA---11AY.30.00001
ORF1ab/nsp31450E1450AgAagCa11AY.30.00001
ORF1ab/nsp31450E1450EgaAgaG11AY.3.10.000085
ORF1ab/nsp31450E1450XGaaTaa11AY.300.000396
ORF1ab/nsp31450E1450EgaAgaG11AY.320.000532
ORF1ab/nsp31450E1450KGaaAaa11AY.330.000067
ORF1ab/nsp31450E1450EgaAgaG11AY.330.000067
ORF1ab/nsp31450E1450XGaaTaa11AY.350.000233
ORF1ab/nsp31450E1450EgaAgaG11AY.360.000148
ORF1ab/nsp31450E1450KGaaAaa11AY.370.000316
ORF1ab/nsp31450E1450XGaaTaa11AY.390.000025
ORF1ab/nsp31450E1450VgAagTa11AY.40.000002
ORF1ab/nsp31450E1450GgAagGa11AY.4.10.000737
ORF1ab/nsp31450E1450DgaAgaC11AY.4.20.000022
ORF1ab/nsp31450E1450KGaaAaa11AY.4.40.000409
ORF1ab/nsp31450E1450EgaAgaG11AY.4.50.000107
ORF1ab/nsp31450E1450XGaaTaa11AY.420.00004
ORF1ab/nsp31450E1450EgaAgaG11AY.420.00004
ORF1ab/nsp31450E1450DgaAgaT11AY.420.00004
ORF1ab/nsp31450E1450GgAagGa11AY.420.00004
ORF1ab/nsp31450E1450XGaaTaa11AY.430.000004
ORF1ab/nsp31450E1450DgaAgaC11AY.430.000004
ORF1ab/nsp31450E1450del1Gaa-aa11AY.440.000006
ORF1ab/nsp31450E1450AgAagCa11AY.440.000006
ORF1ab/nsp31450E1450GgAagGa11AY.440.000006
ORF1ab/nsp31450E1450DgaAgaC11AY.460.000104
ORF1ab/nsp31450E1450EgaAgaG11AY.460.000104
ORF1ab/nsp31450E1450XGaaTaa11AY.46.40.000165
ORF1ab/nsp31450E1450GgAagGa11AY.50.000021
ORF1ab/nsp31450E1450delGAA---11AY.50.000021
ORF1ab/nsp31450E1450EgaAgaG11AY.5.30.000337
ORF1ab/nsp31450E1450DgaAgaC11AY.520.000814
ORF1ab/nsp31450E1450EgaAgaG11AY.540.000095
ORF1ab/nsp31450E1450AgAagCa11AY.540.000095
ORF1ab/nsp31450E1450EgaAgaG11AY.580.000907
ORF1ab/nsp31450E1450XGaaTaa11AY.60.000041
ORF1ab/nsp31450E1450EgaAgaG11AY.60.000041
ORF1ab/nsp31450E1450KGaaAaa11AY.60.000041
ORF1ab/nsp31450E1450GgAagGa11AY.60.000041
ORF1ab/nsp31450E1450delGAA---11AY.600.000938
ORF1ab/nsp31450E1450GgAagGa11AY.680.000274
ORF1ab/nsp31450E1450QGaaCaa11AY.70.000196
ORF1ab/nsp31450E1450GgAagGa11AY.70.000196
ORF1ab/nsp31450E1450XGaaTaa11AY.7.10.000113
ORF1ab/nsp31450E1450KGaaAaa11AY.700.000209
ORF1ab/nsp31450E1450KGaaAaa11AY.710.000475
ORF1ab/nsp31450E1450DgaAgaC11AY.750.000056
ORF1ab/nsp31450E1450EgaAgaG11AY.750.000056
ORF1ab/nsp31450E1450AgAagCa11AY.830.001724
ORF1ab/nsp31450E1450DgaAgaT11AY.840.000437
ORF1ab/nsp31450E1450GgAagGa11AY.870.000833
ORF1ab/nsp31450E1450DgaAgaT11AY.90.000068
ORF1ab/nsp31450E1450DgaAgaT11AY.9.20.000037
ORF1ab/nsp31450E1450AgAagCa11AY.980.000079
ORF1ab/nsp31450E1450GgAagGa11AY.98.10.000048
ORF1ab/nsp31450E1450AgAagCa11AY.98.10.000048
ORF1ab/nsp31450E1450QGaaCaa11AY.98.10.000048
ORF1ab/nsp31450E1450GgAagGa11B0.000128
ORF1ab/nsp31450E1450EgaAgaG11B0.000128
ORF1ab/nsp31450E1450delGAA---11B0.000128
ORF1ab/nsp31450E1450DgaAgaT11B0.000128
ORF1ab/nsp31450E1450del2GAa--a11B.10.000009
ORF1ab/nsp31450E1450QGaaCaa11B.10.000009
ORF1ab/nsp31450E1450delGAA---11B.1.10.000018
ORF1ab/nsp31450E1450AgAagCa11B.1.10.000018
ORF1ab/nsp31450E1450VgAagTa11B.1.1.10.000327
ORF1ab/nsp31450E1450KGaaAaa11B.1.1.100.001115
ORF1ab/nsp31450E1450DgaAgaC11B.1.1.1890.001513
ORF1ab/nsp31450E1450DgaAgaT11B.1.1.2190.005
ORF1ab/nsp31450E1450GgAagGa11B.1.1.2220.000204
ORF1ab/nsp31450E1450KGaaAaa11B.1.1.2650.003155
ORF1ab/nsp31450E1450XGaaTaa11B.1.1.2750.011236
ORF1ab/nsp31450E1450DgaAgaC11B.1.1.2770.000759
ORF1ab/nsp31450E1450DgaAgaC11B.1.1.2940.001266
ORF1ab/nsp31450E1450XGaaTaa11B.1.1.2940.001266
ORF1ab/nsp31450E1450del1Gaa-aa11B.1.1.3060.000438
ORF1ab/nsp31450E1450KGaaAaa11B.1.1.3150.008475
ORF1ab/nsp31450E1450XGaaTaa11B.1.1.3340.016393
ORF1ab/nsp31450E1450EgaAgaG11B.1.1.3480.000796
ORF1ab/nsp31450E1450KGaaAaa11B.1.1.3560.008547
ORF1ab/nsp31450E1450AgAagCa11B.1.1.3690.000446
ORF1ab/nsp31450E1450QGaaCaa11B.1.1.3690.000446
ORF1ab/nsp31450E1450DgaAgaC11B.1.1.370.000193
ORF1ab/nsp31450E1450XGaaTaa11B.1.1.4090.002833
ORF1ab/nsp31450E1450VgAagTa11B.1.1.4160.000905
ORF1ab/nsp31450E1450AgAagCa11B.1.1.4450.037037
ORF1ab/nsp31450E1450KGaaAaa11B.1.1.490.017544
ORF1ab/nsp31450E1450VgAagTa11B.1.1.490.017544
ORF1ab/nsp31450E1450delGAA---11B.1.1.510.001718
ORF1ab/nsp31450E1450GgAagGa11B.1.1.5190.00004
ORF1ab/nsp31450E1450EgaAgaG11B.1.1.5190.00004
ORF1ab/nsp31450E1450DgaAgaT11B.1.1.5280.004808
ORF1ab/nsp31450E1450DgaAgaC11B.1.1.580.005376
ORF1ab/nsp31450E1450del1gAag-a11B.1.1.70.000001
ORF1ab/nsp31450E1450XGaaTaa11B.1.1.700.000341
ORF1ab/nsp31450E1450delGAA---11B.1.1.700.000341
ORF1ab/nsp31450E1450VgAagTa11B.1.1.710.006061
ORF1ab/nsp31450E1450KGaaAaa11B.1.1.80.003584
ORF1ab/nsp31450E1450QGaaCaa11B.1.1100.004525
ORF1ab/nsp31450E1450XGaaTaa11B.1.1390.000733
ORF1ab/nsp31450E1450DgaAgaC11B.1.1460.004237
ORF1ab/nsp31450E1450DgaAgaC11B.1.1580.02381
ORF1ab/nsp31450E1450XGaaTaa11B.1.1600.000031
ORF1ab/nsp31450E1450AgAagCa11B.1.1600.000031
ORF1ab/nsp31450E1450delGAA---11B.1.1600.000031
ORF1ab/nsp31450E1450DgaAgaC11B.1.160.120.00641
ORF1ab/nsp31450E1450DgaAgaC11B.1.160.220.006757
ORF1ab/nsp31450E1450VgAagTa11B.1.160.220.006757
ORF1ab/nsp31450E1450DgaAgaC11B.1.160.280.002924
ORF1ab/nsp31450E1450delGAA---11B.1.160.70.002079
ORF1ab/nsp31450E1450DgaAgaC11B.1.160.90.007194
ORF1ab/nsp31450E1450delGAA---11B.1.177.150.000631
ORF1ab/nsp31450E1450delGAA---11B.1.177.210.000076
ORF1ab/nsp31450E1450KGaaAaa11B.1.177.210.000076
ORF1ab/nsp31450E1450DgaAgaC11B.1.177.230.003236
ORF1ab/nsp31450E1450KGaaAaa11B.1.177.230.003236
ORF1ab/nsp31450E1450GgAagGa11B.1.177.40.000211
ORF1ab/nsp31450E1450delGAA---11B.1.177.40.000211
ORF1ab/nsp31450E1450DgaAgaC11B.1.177.460.000918
ORF1ab/nsp31450E1450DgaAgaC11B.1.177.510.004566
ORF1ab/nsp31450E1450delGAA---11B.1.177.540.000606
ORF1ab/nsp31450E1450GgAagGa11B.1.177.560.000668
ORF1ab/nsp31450E1450DgaAgaT11B.1.177.570.000281
ORF1ab/nsp31450E1450GgAagGa11B.1.177.570.000281
ORF1ab/nsp31450E1450delGAA---11B.1.177.570.000281
ORF1ab/nsp31450E1450delGAA---11B.1.177.60.000977
ORF1ab/nsp31450E1450delGAA---11B.1.177.620.001192
ORF1ab/nsp31450E1450delGAA---11B.1.177.70.000165
ORF1ab/nsp31450E1450XGaaTaa11B.1.177.70.000165
ORF1ab/nsp31450E1450DgaAgaC11B.1.177.710.010101
ORF1ab/nsp31450E1450delGAA---11B.1.177.760.002494
ORF1ab/nsp31450E1450EgaAgaG11B.1.177.770.000726
ORF1ab/nsp31450E1450XGaaTaa11B.1.177.810.000189
ORF1ab/nsp31450E1450XGaaTaa11B.1.177.820.000477
ORF1ab/nsp31450E1450KGaaAaa11B.1.177.870.000728
ORF1ab/nsp31450E1450DgaAgaC11B.1.177.890.02439
ORF1ab/nsp31450E1450QGaaCaa11B.1.177.90.001332
ORF1ab/nsp31450E1450delGAA---11B.1.177.90.001332
ORF1ab/nsp31450E1450VgAagTa11B.1.20.000009
ORF1ab/nsp31450E1450KGaaAaa11B.1.2210.000071
ORF1ab/nsp31450E1450EgaAgaG11B.1.2210.000071
ORF1ab/nsp31450E1450VgAagTa11B.1.2340.000132
ORF1ab/nsp31450E1450DgaAgaC11B.1.2360.002053
ORF1ab/nsp31450E1450GgAagGa11B.1.2400.000216
ORF1ab/nsp31450E1450KGaaAaa11B.1.2430.00007
ORF1ab/nsp31450E1450EgaAgaG11B.1.2580.000067
ORF1ab/nsp31450E1450QGaaCaa11B.1.2580.000067
ORF1ab/nsp31450E1450EgaAgaG11B.1.258.70.001912
ORF1ab/nsp31450E1450delGAA---11B.1.2650.001271
ORF1ab/nsp31450E1450DgaAgaC11B.1.2790.000514
ORF1ab/nsp31450E1450VgAagTa11B.1.2890.00266
ORF1ab/nsp31450E1450VgAagTa11B.1.3110.000275
ORF1ab/nsp31450E1450GgAagGa11B.1.3110.000275
ORF1ab/nsp31450E1450QGaaCaa11B.1.3290.000608
ORF1ab/nsp31450E1450XGaaTaa11B.1.3290.000608
ORF1ab/nsp31450E1450KGaaAaa11B.1.3490.000715
ORF1ab/nsp31450E1450KGaaAaa11B.1.3510.00003
ORF1ab/nsp31450E1450XGaaTaa11B.1.3510.00003
ORF1ab/nsp31450E1450GgAagGa11B.1.360.000146
ORF1ab/nsp31450E1450XGaaTaa11B.1.360.000146
ORF1ab/nsp31450E1450KGaaAaa11B.1.36.170.000494
ORF1ab/nsp31450E1450delGAA---11B.1.36.170.000494
ORF1ab/nsp31450E1450delGAA---11B.1.36.180.00042
ORF1ab/nsp31450E1450KGaaAaa11B.1.36.270.000763
ORF1ab/nsp31450E1450KGaaAaa11B.1.36.290.000517
ORF1ab/nsp31450E1450GgAagGa11B.1.36.290.000517
ORF1ab/nsp31450E1450AgAagCa11B.1.3710.001122
ORF1ab/nsp31450E1450EgaAgaG11B.1.3750.00082
ORF1ab/nsp31450E1450EgaAgaG11B.1.3780.006849
ORF1ab/nsp31450E1450QGaaCaa11B.1.4080.00369
ORF1ab/nsp31450E1450delGAA---11B.1.4150.014286
ORF1ab/nsp31450E1450DgaAgaT11B.1.4160.001269
ORF1ab/nsp31450E1450delGAA---11B.1.416.10.001563
ORF1ab/nsp31450E1450EgaAgaG11B.1.4220.000812
ORF1ab/nsp31450E1450AgAagCa11B.1.4260.001009
ORF1ab/nsp31450E1450KGaaAaa11B.1.4270.00005
ORF1ab/nsp31450E1450XGaaTaa11B.1.4270.00005
ORF1ab/nsp31450E1450EgaAgaG11B.1.4290.000024
ORF1ab/nsp31450E1450QGaaCaa11B.1.4290.000024
ORF1ab/nsp31450E1450VgAagTa11B.1.4360.001029
ORF1ab/nsp31450E1450AgAagCa11B.1.4620.007246
ORF1ab/nsp31450E1450EgaAgaG11B.1.4680.005714
ORF1ab/nsp31450E1450GgAagGa11B.1.4710.002732
ORF1ab/nsp31450E1450VgAagTa11B.1.5170.000427
ORF1ab/nsp31450E1450KGaaAaa11B.1.5240.001406
ORF1ab/nsp31450E1450DgaAgaT11B.1.5260.000024
ORF1ab/nsp31450E1450EgaAgaG11B.1.5260.000024
ORF1ab/nsp31450E1450KGaaAaa11B.1.5260.000024
ORF1ab/nsp31450E1450EgaAgaG11B.1.564.10.001577
ORF1ab/nsp31450E1450GgAagGa11B.1.5670.003333
ORF1ab/nsp31450E1450DgaAgaT11B.1.575.10.002439
ORF1ab/nsp31450E1450XGaaTaa11B.1.5760.000907
ORF1ab/nsp31450E1450VgAagTa11B.1.5760.000907
ORF1ab/nsp31450E1450GgAagGa11B.1.5950.000261
ORF1ab/nsp31450E1450delGAA---11B.1.5960.000087
ORF1ab/nsp31450E1450EgaAgaG11B.1.5960.000087
ORF1ab/nsp31450E1450DgaAgaC11B.1.5960.000087
ORF1ab/nsp31450E1450XGaaTaa11B.1.6100.003546
ORF1ab/nsp31450E1450delGAA---11B.1.617.20.000004
ORF1ab/nsp31450E1450QGaaCaa11B.1.617.20.000004
ORF1ab/nsp31450E1450VgAagTa11B.1.617.20.000004
ORF1ab/nsp31450E1450delGAA---11B.1.6210.000089
ORF1ab/nsp31450E1450XGaaTaa11B.1.6210.000089
ORF1ab/nsp31450E1450EgaAgaG11B.1.621.10.000506
ORF1ab/nsp31450E1450EgaAgaG11B.1.6230.000536
ORF1ab/nsp31450E1450XGaaTaa11B.1.6230.000536
ORF1ab/nsp31450E1450EgaAgaG11B.1.6330.041667
ORF1ab/nsp31450E1450KGaaAaa11B.1.910.002075
ORF1ab/nsp31450E1450XGaaTaa11B.3.10.001658
ORF1ab/nsp31450E1450KGaaAaa11B.3.10.001658
ORF1ab/nsp31450E1450delGAA---11B.340.013699
ORF1ab/nsp31450E1450KGaaAaa11B.400.000364
ORF1ab/nsp31450E1450KGaaAaa11B.610.005747
ORF1ab/nsp31450E1450DgaAgaC11C.160.00106
ORF1ab/nsp31450E1450DgaAgaC11C.350.000774
ORF1ab/nsp31450E1450XGaaTaa11C.37.10.002618
ORF1ab/nsp31450E1450XGaaTaa11D.20.000075
ORF1ab/nsp31450E1450AgAagCa11D.20.000075
ORF1ab/nsp31450E1450EgaAgaG11D.50.004975
ORF1ab/nsp31450E1450EgaAgaG11P.1.120.000484
ORF1ab/nsp31450E1450KGaaAaa11P.1.140.000048
ORF1ab/nsp31450E1450delGAA---11P.1.150.000232
ORF1ab/nsp31450E1450GgAagGa11P.1.150.000232
ORF1ab/nsp31450E1450GgAagGa11P.1.170.000162
ORF1ab/nsp31450E1450EgaAgaG11P.1.170.000162
ORF1ab/nsp31450E1450KGaaAaa11P.1.20.001156
ORF1ab/nsp31450E1450EgaAgaG11Q.10.000126
ORF1ab/nsp31450E1450EgaAgaG11Q.30.000145
ORF1ab/nsp31450E1450delGAA---11Q.80.000165
ORF1ab/nsp31450E1450KGaaAaa11R.10.00009
ORF1ab/nsp31450E1450delGAA---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.