CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1443 & Codon = tAt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31443S1443YS2261YnonsyntCttAt616117046-7048

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31443S1443YtCttAt6161All0.000012
ORF1ab/nsp31443S1443YtCttAt4141B.1.6161
ORF1ab/nsp31443S1443YtCttAt44AY.40.000006
ORF1ab/nsp31443S1443YtCttAt33B.1.1770.00004
ORF1ab/nsp31443S1443YtCttAt22B.10.000018
ORF1ab/nsp31443S1443YtCttAt22B.1.4990.002101
ORF1ab/nsp31443S1443YtCttAt11AY.320.000532
ORF1ab/nsp31443S1443YtCttAt11B.1.10.000018
ORF1ab/nsp31443S1443YtCttAt11B.1.1.3000.010753
ORF1ab/nsp31443S1443YtCttAt11B.1.1.3170.000412
ORF1ab/nsp31443S1443YtCttAt11B.1.1.70.000001
ORF1ab/nsp31443S1443YtCttAt11B.1.20.000009
ORF1ab/nsp31443S1443YtCttAt11B.1.4290.000024
ORF1ab/nsp31443S1443YtCttAt11B.1.5760.000907
ORF1ab/nsp31443S1443YtCttAt11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.