CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1442

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31442P1442LP2260LnonsyncCtcTt127912750.9968737043-7045
ORF1ab/nsp31442P1442LP2260LnonsyncCTcTC127940.003127447043-7045
ORF1ab/nsp31442P1442SP2260SnonsynCctTct102110200.9990217043-7045
ORF1ab/nsp31442P1442SP2260SnonsynCcTTcC102110.0009794327043-7045
ORF1ab/nsp31442P1442PP2260PsynccTccC9095100.5610567043-7045
ORF1ab/nsp31442P1442PP2260PsynccTccG9093920.4312437043-7045
ORF1ab/nsp31442P1442PP2260PsynccTccA90970.007700777043-7045
ORF1ab/nsp31442P1442delP2260deldelCCT---20420417043-7045
ORF1ab/nsp31442P1442HP2260HnonsyncCtcAt1401390.9928577043-7045
ORF1ab/nsp31442P1442HP2260HnonsyncCTcAC14010.007142867043-7045
ORF1ab/nsp31442P1442TP2260TnonsynCctAct30290.9666677043-7045
ORF1ab/nsp31442P1442TP2260TnonsynCcTAcA3010.03333337043-7045
ORF1ab/nsp31442P1442del1P2260del1delCct-ct1260.57043-7045
ORF1ab/nsp31442P1442del1P2260del1delccTcc-1250.4166677043-7045
ORF1ab/nsp31442P1442del1P2260del1delCcT-cC1210.08333337043-7045
ORF1ab/nsp31442P1442AP2260AnonsynCctGct540.87043-7045
ORF1ab/nsp31442P1442AP2260AnonsynCcTGcC510.27043-7045
ORF1ab/nsp31442P1442FP2260FnonsynCCtTTt430.757043-7045
ORF1ab/nsp31442P1442FP2260FnonsynCCTTTC410.257043-7045
ORF1ab/nsp31442P1442del2P2260del2delcCTc--2217043-7045
ORF1ab/nsp31442P1442YP2260YnonsynCCtTAt210.57043-7045
ORF1ab/nsp31442P1442YP2260YnonsynCCTTAC210.57043-7045
ORF1ab/nsp31442P1442VP2260VnonsynCCtGTt210.57043-7045
ORF1ab/nsp31442P1442VP2260VnonsynCCTGTC210.57043-7045
ORF1ab/nsp31442P1442IP2260InonsynCCTATC1117043-7045
ORF1ab/nsp31442P1442RP2260RnonsyncCtcGt1117043-7045
ORF1ab/nsp31442P1442QP2260QnonsyncCTcAA1117043-7045
ORF1ab/nsp31442P1442GP2260GnonsynCCTGGG1117043-7045

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31442P1442LcCtcTt12751279All0.000244
ORF1ab/nsp31442P1442LcCTcTC41279All0.000001
ORF1ab/nsp31442P1442SCctTct10201021All0.000195
ORF1ab/nsp31442P1442SCcTTcC11021All0
ORF1ab/nsp31442P1442PccTccC510909All0.000098
ORF1ab/nsp31442P1442PccTccG392909All0.000075
ORF1ab/nsp31442P1442PccTccA7909All0.000001
ORF1ab/nsp31442P1442LcCtcTt737738B.1.177.580.981358
ORF1ab/nsp31442P1442LcCTcTC1738B.1.177.580.001332
ORF1ab/nsp31442P1442SCctTct283283P.60.889937
ORF1ab/nsp31442P1442PccTccC195246B.1.1.70.000175
ORF1ab/nsp31442P1442PccTccG50246B.1.1.70.000045
ORF1ab/nsp31442P1442PccTccA1246B.1.1.70.000001
ORF1ab/nsp31442P1442delCCT---204204All0.000039
ORF1ab/nsp31442P1442PccTccC163185AY.30.001621
ORF1ab/nsp31442P1442PccTccG22185AY.30.000219
ORF1ab/nsp31442P1442SCctTct150150B.1.1.70.000134
ORF1ab/nsp31442P1442HcCtcAt139140All0.000027
ORF1ab/nsp31442P1442HcCTcAC1140All0
ORF1ab/nsp31442P1442SCctTct134134AY.40.000209
ORF1ab/nsp31442P1442LcCtcTt104104B.1.1.70.000093
ORF1ab/nsp31442P1442LcCtcTt9191B.1.20.000801
ORF1ab/nsp31442P1442delCCT---7979B.1.1.70.000071
ORF1ab/nsp31442P1442PccTccG7078AY.440.000426
ORF1ab/nsp31442P1442PccTccC878AY.440.000049
ORF1ab/nsp31442P1442LcCtcTt5959AY.1030.000366
ORF1ab/nsp31442P1442SCctTct5656B.1.3690.015973
ORF1ab/nsp31442P1442PccTccG4245AY.250.000253
ORF1ab/nsp31442P1442PccTccC345AY.250.000018
ORF1ab/nsp31442P1442HcCtcAt3939AY.40.000061
ORF1ab/nsp31442P1442PccTccG3637AY.1020.000955
ORF1ab/nsp31442P1442PccTccC137AY.1020.000027
ORF1ab/nsp31442P1442LcCtcTt3737C.36.30.020987
ORF1ab/nsp31442P1442PccTccG3234AY.1030.000199
ORF1ab/nsp31442P1442PccTccC234AY.1030.000012
ORF1ab/nsp31442P1442PccTccC3333B.1.1.5190.00131
ORF1ab/nsp31442P1442LcCtcTt3333B.1.4290.000776
ORF1ab/nsp31442P1442SCctTct3232B.1.1.2970.071588
ORF1ab/nsp31442P1442SCctTct3232B.1.2390.039072
ORF1ab/nsp31442P1442TCctAct2930All0.000006
ORF1ab/nsp31442P1442TCcTAcA130All0
ORF1ab/nsp31442P1442PccTccC2426AY.50.000496
ORF1ab/nsp31442P1442PccTccG226AY.50.000041
ORF1ab/nsp31442P1442SCctTct2626B.1.617.20.000098
ORF1ab/nsp31442P1442PccTccG2225B.1.617.20.000083
ORF1ab/nsp31442P1442PccTccC325B.1.617.20.000011
ORF1ab/nsp31442P1442LcCtcTt2323AY.40.000036
ORF1ab/nsp31442P1442SCctTct2323B.1.258.170.002391
ORF1ab/nsp31442P1442SCctTct2020B.1.10.000363
ORF1ab/nsp31442P1442SCctTct1818B.1.20.000158
ORF1ab/nsp31442P1442LcCtcTt1818B.1.617.20.000068
ORF1ab/nsp31442P1442PccTccG1216AY.1190.000424
ORF1ab/nsp31442P1442PccTccC416AY.1190.000141
ORF1ab/nsp31442P1442LcCtcTt1616AY.330.001068
ORF1ab/nsp31442P1442PccTccC1616AY.740.00185
ORF1ab/nsp31442P1442SCctTct1616B.10.000147
ORF1ab/nsp31442P1442LcCtcTt1516B.10.000137
ORF1ab/nsp31442P1442LcCTcTC116B.10.000009
ORF1ab/nsp31442P1442HcCtcAt1616B.1.1.70.000014
ORF1ab/nsp31442P1442PccTccC1515R.10.00135
ORF1ab/nsp31442P1442SCctTct1414AY.1030.000087
ORF1ab/nsp31442P1442HcCtcAt1313AY.1030.000081
ORF1ab/nsp31442P1442SCctTct1313AY.440.000079
ORF1ab/nsp31442P1442delCCT---1313B.1.1770.000171
ORF1ab/nsp31442P1442LcCtcTt1313B.1.1770.000171
ORF1ab/nsp31442P1442del1Cct-ct612All0.000001
ORF1ab/nsp31442P1442del1ccTcc-512All0.000001
ORF1ab/nsp31442P1442del1CcT-cC112All0
ORF1ab/nsp31442P1442delCCT---1212AY.40.000019
ORF1ab/nsp31442P1442SCctTct1212B.1.4270.000606
ORF1ab/nsp31442P1442SCctTct1111B.1.2580.000732
ORF1ab/nsp31442P1442HcCtcAt1111B.1.617.20.000041
ORF1ab/nsp31442P1442LcCtcTt1010AY.46.40.001645
ORF1ab/nsp31442P1442PccTccG810B.10.000073
ORF1ab/nsp31442P1442PccTccC110B.10.000009
ORF1ab/nsp31442P1442PccTccA110B.10.000009
ORF1ab/nsp31442P1442SCctTct1010B.1.1770.000132
ORF1ab/nsp31442P1442LcCtcTt99AY.1020.000239
ORF1ab/nsp31442P1442LcCtcTt99AY.30.00009
ORF1ab/nsp31442P1442PccTccG79AY.40.000011
ORF1ab/nsp31442P1442PccTccA19AY.40.000002
ORF1ab/nsp31442P1442PccTccC19AY.40.000002
ORF1ab/nsp31442P1442SCctTct99AY.430.00004
ORF1ab/nsp31442P1442TCctAct99B.1.177.70.001484
ORF1ab/nsp31442P1442HcCtcAt88AY.250.000048
ORF1ab/nsp31442P1442PccTccG78AY.260.000198
ORF1ab/nsp31442P1442PccTccC18AY.260.000028
ORF1ab/nsp31442P1442delCCT---88B.10.000073
ORF1ab/nsp31442P1442PccTccG77AY.1000.000322
ORF1ab/nsp31442P1442PccTccG77AY.200.000272
ORF1ab/nsp31442P1442SCctTct77B.1.4290.000165
ORF1ab/nsp31442P1442PccTccC77Q.80.001154
ORF1ab/nsp31442P1442SCctTct66AY.250.000036
ORF1ab/nsp31442P1442LcCtcTt66AY.250.000036
ORF1ab/nsp31442P1442LcCtcTt66AY.290.000095
ORF1ab/nsp31442P1442PccTccG66AY.390.000148
ORF1ab/nsp31442P1442delCCT---66AY.4.50.000645
ORF1ab/nsp31442P1442PccTccG66AY.430.000027
ORF1ab/nsp31442P1442delCCT---66AY.430.000027
ORF1ab/nsp31442P1442PccTccG66AY.46.40.000987
ORF1ab/nsp31442P1442SCctTct66AY.690.00112
ORF1ab/nsp31442P1442PccTccG66B.1.6370.000438
ORF1ab/nsp31442P1442HcCtcAt66P.10.000095
ORF1ab/nsp31442P1442SCctTct66P.1.100.001617
ORF1ab/nsp31442P1442ACctGct45All0.000001
ORF1ab/nsp31442P1442ACcTGcC15All0
ORF1ab/nsp31442P1442HcCtcAt55AY.1020.000133
ORF1ab/nsp31442P1442SCctTct55AY.1130.000712
ORF1ab/nsp31442P1442LcCtcTt55AY.340.000485
ORF1ab/nsp31442P1442LcCtcTt55AY.39.10.000198
ORF1ab/nsp31442P1442LcCtcTt55AY.430.000022
ORF1ab/nsp31442P1442PccTccG55AY.9.10.000419
ORF1ab/nsp31442P1442PccTccC55B.1.10.000091
ORF1ab/nsp31442P1442delCCT---55B.1.10.000091
ORF1ab/nsp31442P1442LcCtcTt55B.1.177.810.000947
ORF1ab/nsp31442P1442HcCtcAt55B.1.20.000044
ORF1ab/nsp31442P1442SCctTct55B.1.5260.000118
ORF1ab/nsp31442P1442LcCtcTt55B.1.5960.000436
ORF1ab/nsp31442P1442PccTccC240.111111
ORF1ab/nsp31442P1442PccTccA240.111111
ORF1ab/nsp31442P1442FCCtTTt34All0.000001
ORF1ab/nsp31442P1442FCCTTTC14All0
ORF1ab/nsp31442P1442SCctTct44AY.1020.000106
ORF1ab/nsp31442P1442SCctTct44AY.30.00004
ORF1ab/nsp31442P1442SCctTct44AY.4.20.000087
ORF1ab/nsp31442P1442SCctTct44AY.410.001176
ORF1ab/nsp31442P1442SCctTct44AY.450.000487
ORF1ab/nsp31442P1442PccTccG44AY.470.000124
ORF1ab/nsp31442P1442PccTccC44AY.570.002625
ORF1ab/nsp31442P1442LcCtcTt44B.1.10.000073
ORF1ab/nsp31442P1442LcCtcTt44B.1.1.2070.004728
ORF1ab/nsp31442P1442SCctTct44P.10.000063
ORF1ab/nsp31442P1442LcCtcTt44P.10.000063
ORF1ab/nsp31442P1442LcCtcTt230.111111
ORF1ab/nsp31442P1442LcCTcTC130.055556
ORF1ab/nsp31442P1442HcCtcAt33AY.1130.000427
ORF1ab/nsp31442P1442PccTccG33AY.1170.000254
ORF1ab/nsp31442P1442delCCT---33AY.250.000018
ORF1ab/nsp31442P1442SCctTct33AY.260.000085
ORF1ab/nsp31442P1442SCctTct33AY.330.0002
ORF1ab/nsp31442P1442TCctAct33AY.40.000005
ORF1ab/nsp31442P1442HcCtcAt33AY.440.000018
ORF1ab/nsp31442P1442LcCtcTt33AY.440.000018
ORF1ab/nsp31442P1442PccTccG33AY.610.000314
ORF1ab/nsp31442P1442SCctTct33AY.750.000168
ORF1ab/nsp31442P1442TCctAct33B.10.000027
ORF1ab/nsp31442P1442ACctGct23B.10.000018
ORF1ab/nsp31442P1442ACcTGcC13B.10.000009
ORF1ab/nsp31442P1442SCctTct33B.1.1.280.000934
ORF1ab/nsp31442P1442SCctTct33B.1.1.5190.000119
ORF1ab/nsp31442P1442LcCtcTt33B.1.1.540.009063
ORF1ab/nsp31442P1442HcCtcAt33B.1.177.100.002634
ORF1ab/nsp31442P1442PccTccC33B.1.20.000026
ORF1ab/nsp31442P1442delCCT---33B.1.2210.000213
ORF1ab/nsp31442P1442LcCtcTt33B.1.36.10.003421
ORF1ab/nsp31442P1442HcCtcAt33B.1.36.270.00229
ORF1ab/nsp31442P1442HcCtcAt33B.1.36.80.003
ORF1ab/nsp31442P1442SCctTct33B.1.3960.002117
ORF1ab/nsp31442P1442LcCtcTt33B.1.4270.000151
ORF1ab/nsp31442P1442delCCT---33B.1.617.20.000011
ORF1ab/nsp31442P1442SCctTct33D.20.000225
ORF1ab/nsp31442P1442delCCT---220.111111
ORF1ab/nsp31442P1442HcCTcAC120.055556
ORF1ab/nsp31442P1442SCcTTcC120.055556
ORF1ab/nsp31442P1442YCCtTAt120.055556
ORF1ab/nsp31442P1442FCCtTTt120.055556
ORF1ab/nsp31442P1442HcCtcAt120.055556
ORF1ab/nsp31442P1442SCctTct120.055556
ORF1ab/nsp31442P1442FCCTTTC120.055556
ORF1ab/nsp31442P1442YCCTTAC120.055556
ORF1ab/nsp31442P1442SCctTct22AB.10.016393
ORF1ab/nsp31442P1442del2cCTc--22All0
ORF1ab/nsp31442P1442VCCTGTC12All0
ORF1ab/nsp31442P1442YCCTTAC12All0
ORF1ab/nsp31442P1442YCCtTAt12All0
ORF1ab/nsp31442P1442VCCtGTt12All0
ORF1ab/nsp31442P1442SCctTct22AY.1190.000071
ORF1ab/nsp31442P1442SCctTct22AY.1200.000074
ORF1ab/nsp31442P1442PccTccG22AY.190.002281
ORF1ab/nsp31442P1442SCctTct22AY.200.000078
ORF1ab/nsp31442P1442HcCtcAt22AY.30.00002
ORF1ab/nsp31442P1442TCctAct22AY.30.00002
ORF1ab/nsp31442P1442PccTccG22AY.3.10.000171
ORF1ab/nsp31442P1442SCctTct22AY.310.037037
ORF1ab/nsp31442P1442PccTccG22AY.350.000466
ORF1ab/nsp31442P1442HcCtcAt22AY.4.20.000043
ORF1ab/nsp31442P1442LcCtcTt22AY.420.00008
ORF1ab/nsp31442P1442del1Cct-ct12AY.430.000004
ORF1ab/nsp31442P1442del1ccTcc-12AY.430.000004
ORF1ab/nsp31442P1442TCctAct22AY.440.000012
ORF1ab/nsp31442P1442PccTccG22AY.460.000208
ORF1ab/nsp31442P1442SCctTct22AY.470.000062
ORF1ab/nsp31442P1442delCCT---22AY.50.000041
ORF1ab/nsp31442P1442LcCtcTt22AY.520.001629
ORF1ab/nsp31442P1442PccTccG22AY.540.000191
ORF1ab/nsp31442P1442PccTccC22AY.730.001331
ORF1ab/nsp31442P1442PccTccC22AY.9.20.000073
ORF1ab/nsp31442P1442SCctTct22AY.99.20.000184
ORF1ab/nsp31442P1442HcCtcAt22B.10.000018
ORF1ab/nsp31442P1442HcCtcAt22B.1.10.000036
ORF1ab/nsp31442P1442LcCtcTt22B.1.1.2140.000111
ORF1ab/nsp31442P1442LcCtcTt22B.1.1.3010.002358
ORF1ab/nsp31442P1442SCctTct22B.1.1.3050.007722
ORF1ab/nsp31442P1442LcCtcTt22B.1.1.3350.025974
ORF1ab/nsp31442P1442TCctAct22B.1.1.70.000002
ORF1ab/nsp31442P1442PccTccC22B.1.1770.000026
ORF1ab/nsp31442P1442SCctTct22B.1.177.180.00232
ORF1ab/nsp31442P1442delCCT---22B.1.177.40.000422
ORF1ab/nsp31442P1442delCCT---22B.1.177.570.000562
ORF1ab/nsp31442P1442delCCT---22B.1.177.70.00033
ORF1ab/nsp31442P1442delCCT---22B.1.177.870.001456
ORF1ab/nsp31442P1442SCctTct22B.1.2430.000139
ORF1ab/nsp31442P1442PccTccG12B.1.2430.00007
ORF1ab/nsp31442P1442PccTccC12B.1.2430.00007
ORF1ab/nsp31442P1442SCctTct22B.1.3510.000059
ORF1ab/nsp31442P1442LcCtcTt22B.1.3610.002577
ORF1ab/nsp31442P1442SCctTct22B.1.3670.001585
ORF1ab/nsp31442P1442TCctAct22B.1.438.10.000215
ORF1ab/nsp31442P1442delCCT---22B.1.5250.000226
ORF1ab/nsp31442P1442PccTccG22B.1.5260.000047
ORF1ab/nsp31442P1442SCctTct22B.1.5930.021739
ORF1ab/nsp31442P1442SCctTct22B.1.6090.000959
ORF1ab/nsp31442P1442PccTccG12B.1.6210.000089
ORF1ab/nsp31442P1442PccTccC12B.1.6210.000089
ORF1ab/nsp31442P1442SCctTct22B.1.6370.000146
ORF1ab/nsp31442P1442delCCT---22P.10.000032
ORF1ab/nsp31442P1442PccTccC22P.10.000032
ORF1ab/nsp31442P1442delCCT---22U.30.007722
ORF1ab/nsp31442P1442SCctTct11A0.000387
ORF1ab/nsp31442P1442delCCT---11A0.000387
ORF1ab/nsp31442P1442PccTccC11A.23.10.000704
ORF1ab/nsp31442P1442PccTccC11A.270.001656
ORF1ab/nsp31442P1442delCCT---11A.280.002646
ORF1ab/nsp31442P1442SCctTct11AE.80.000489
ORF1ab/nsp31442P1442GCCTGGG11All0
ORF1ab/nsp31442P1442QcCTcAA11All0
ORF1ab/nsp31442P1442RcCtcGt11All0
ORF1ab/nsp31442P1442ICCTATC11All0
ORF1ab/nsp31442P1442PccTccC11AY.10.000396
ORF1ab/nsp31442P1442TCctAct11AY.1000.000046
ORF1ab/nsp31442P1442HcCtcAt11AY.1000.000046
ORF1ab/nsp31442P1442SCctTct11AY.1000.000046
ORF1ab/nsp31442P1442del1Cct-ct11AY.1020.000027
ORF1ab/nsp31442P1442delCCT---11AY.1030.000006
ORF1ab/nsp31442P1442LcCtcTt11AY.1080.001103
ORF1ab/nsp31442P1442PccTccG11AY.1090.00074
ORF1ab/nsp31442P1442PccTccG11AY.1100.000113
ORF1ab/nsp31442P1442PccTccG11AY.1130.000142
ORF1ab/nsp31442P1442PccTccG11AY.1140.000231
ORF1ab/nsp31442P1442SCctTct11AY.1170.000085
ORF1ab/nsp31442P1442PccTccG11AY.1180.000063
ORF1ab/nsp31442P1442LcCtcTt11AY.1180.000063
ORF1ab/nsp31442P1442delCCT---11AY.1190.000035
ORF1ab/nsp31442P1442delCCT---11AY.1200.000037
ORF1ab/nsp31442P1442del1Cct-ct11AY.120.10.000321
ORF1ab/nsp31442P1442SCctTct11AY.160.00038
ORF1ab/nsp31442P1442SCctTct11AY.16.10.00047
ORF1ab/nsp31442P1442delCCT---11AY.190.00114
ORF1ab/nsp31442P1442LcCtcTt11AY.200.000039
ORF1ab/nsp31442P1442GCCTGGG11AY.250.000006
ORF1ab/nsp31442P1442VCCTGTC11AY.250.000006
ORF1ab/nsp31442P1442LcCtcTt11AY.260.000028
ORF1ab/nsp31442P1442del1ccTcc-11AY.260.000028
ORF1ab/nsp31442P1442PccTccC11AY.270.000065
ORF1ab/nsp31442P1442HcCtcAt11AY.3.10.000085
ORF1ab/nsp31442P1442SCctTct11AY.300.000396
ORF1ab/nsp31442P1442del1Cct-ct11AY.330.000067
ORF1ab/nsp31442P1442SCctTct11AY.340.000097
ORF1ab/nsp31442P1442LcCtcTt11AY.34.10.00051
ORF1ab/nsp31442P1442HcCtcAt11AY.350.000233
ORF1ab/nsp31442P1442delCCT---11AY.360.000148
ORF1ab/nsp31442P1442PccTccG11AY.360.000148
ORF1ab/nsp31442P1442PccTccG11AY.370.000316
ORF1ab/nsp31442P1442SCctTct11AY.390.000025
ORF1ab/nsp31442P1442HcCtcAt11AY.39.10.00004
ORF1ab/nsp31442P1442del1CcT-cC11AY.40.000002
ORF1ab/nsp31442P1442FCCtTTt11AY.40.000002
ORF1ab/nsp31442P1442SCctTct11AY.4.2.10.000149
ORF1ab/nsp31442P1442SCctTct11AY.4.30.000842
ORF1ab/nsp31442P1442delCCT---11AY.420.00004
ORF1ab/nsp31442P1442SCctTct11AY.420.00004
ORF1ab/nsp31442P1442PccTccG11AY.420.00004
ORF1ab/nsp31442P1442FCCtTTt11AY.430.000004
ORF1ab/nsp31442P1442LcCtcTt11AY.450.000122
ORF1ab/nsp31442P1442SCctTct11AY.46.60.000072
ORF1ab/nsp31442P1442LcCtcTt11AY.470.000031
ORF1ab/nsp31442P1442delCCT---11AY.5.30.000337
ORF1ab/nsp31442P1442PccTccG11AY.5.30.000337
ORF1ab/nsp31442P1442PccTccG11AY.560.001605
ORF1ab/nsp31442P1442SCctTct11AY.60.000041
ORF1ab/nsp31442P1442delCCT---11AY.60.000041
ORF1ab/nsp31442P1442LcCtcTt11AY.60.000041
ORF1ab/nsp31442P1442delCCT---11AY.600.000938
ORF1ab/nsp31442P1442PccTccC11AY.630.000387
ORF1ab/nsp31442P1442HcCtcAt11AY.650.000533
ORF1ab/nsp31442P1442delCCT---11AY.70.000196
ORF1ab/nsp31442P1442delCCT---11AY.7.20.000559
ORF1ab/nsp31442P1442delCCT---11AY.720.001361
ORF1ab/nsp31442P1442LcCtcTt11AY.740.000116
ORF1ab/nsp31442P1442TCctAct11AY.750.000056
ORF1ab/nsp31442P1442SCctTct11AY.75.10.00018
ORF1ab/nsp31442P1442LcCtcTt11AY.790.001211
ORF1ab/nsp31442P1442HcCtcAt11AY.790.001211
ORF1ab/nsp31442P1442SCctTct11AY.820.001357
ORF1ab/nsp31442P1442SCctTct11AY.870.000833
ORF1ab/nsp31442P1442SCctTct11AY.90.000068
ORF1ab/nsp31442P1442SCctTct11AY.9.20.000037
ORF1ab/nsp31442P1442delCCT---11AY.9.20.000037
ORF1ab/nsp31442P1442LcCtcTt11AY.9.20.000037
ORF1ab/nsp31442P1442PccTccA11AY.910.00073
ORF1ab/nsp31442P1442delCCT---11AY.98.10.000048
ORF1ab/nsp31442P1442delCCT---11AY.99.10.001553
ORF1ab/nsp31442P1442PccTccC11B0.000128
ORF1ab/nsp31442P1442delCCT---11B0.000128
ORF1ab/nsp31442P1442QcCTcAA11B.10.000009
ORF1ab/nsp31442P1442SCctTct11B.1.1.1290.009174
ORF1ab/nsp31442P1442SCctTct11B.1.1.1810.004545
ORF1ab/nsp31442P1442HcCtcAt11B.1.1.2070.001182
ORF1ab/nsp31442P1442TCcTAcA11B.1.1.2160.00089
ORF1ab/nsp31442P1442delCCT---11B.1.1.2210.010101
ORF1ab/nsp31442P1442LcCtcTt11B.1.1.2220.000204
ORF1ab/nsp31442P1442delCCT---11B.1.1.2360.006897
ORF1ab/nsp31442P1442SCctTct11B.1.1.2400.004695
ORF1ab/nsp31442P1442SCctTct11B.1.1.250.000569
ORF1ab/nsp31442P1442SCctTct11B.1.1.2650.003155
ORF1ab/nsp31442P1442del1ccTcc-11B.1.1.280.000311
ORF1ab/nsp31442P1442VCCtGTt11B.1.1.280.000311
ORF1ab/nsp31442P1442TCctAct11B.1.1.280.000311
ORF1ab/nsp31442P1442SCctTct11B.1.1.2840.000107
ORF1ab/nsp31442P1442PccTccC11B.1.1.2940.001266
ORF1ab/nsp31442P1442SCctTct11B.1.1.3060.000438
ORF1ab/nsp31442P1442LcCtcTt11B.1.1.3680.003086
ORF1ab/nsp31442P1442PccTccG11B.1.1.3690.000446
ORF1ab/nsp31442P1442SCctTct11B.1.1.4610.012048
ORF1ab/nsp31442P1442LcCtcTt11B.1.1.5070.008696
ORF1ab/nsp31442P1442delCCT---11B.1.1.510.001718
ORF1ab/nsp31442P1442LcCtcTt11B.1.1.5190.00004
ORF1ab/nsp31442P1442SCctTct11B.1.1.670.004566
ORF1ab/nsp31442P1442del1Cct-ct11B.1.1.70.000001
ORF1ab/nsp31442P1442ACctGct11B.1.1.70.000001
ORF1ab/nsp31442P1442delCCT---11B.1.1.700.000341
ORF1ab/nsp31442P1442SCctTct11B.1.1080.005814
ORF1ab/nsp31442P1442SCctTct11B.1.110.30.000718
ORF1ab/nsp31442P1442LcCtcTt11B.1.1600.000031
ORF1ab/nsp31442P1442delCCT---11B.1.1600.000031
ORF1ab/nsp31442P1442PccTccC11B.1.160.130.027778
ORF1ab/nsp31442P1442delCCT---11B.1.160.70.002079
ORF1ab/nsp31442P1442HcCtcAt11B.1.1770.000013
ORF1ab/nsp31442P1442del2cCTc--11B.1.1770.000013
ORF1ab/nsp31442P1442delCCT---11B.1.177.150.000631
ORF1ab/nsp31442P1442delCCT---11B.1.177.160.000664
ORF1ab/nsp31442P1442delCCT---11B.1.177.190.001431
ORF1ab/nsp31442P1442delCCT---11B.1.177.210.000076
ORF1ab/nsp31442P1442LcCtcTt11B.1.177.540.000606
ORF1ab/nsp31442P1442delCCT---11B.1.177.60.000977
ORF1ab/nsp31442P1442delCCT---11B.1.177.620.001192
ORF1ab/nsp31442P1442SCctTct11B.1.177.670.007634
ORF1ab/nsp31442P1442delCCT---11B.1.177.680.015152
ORF1ab/nsp31442P1442delCCT---11B.1.177.760.002494
ORF1ab/nsp31442P1442SCctTct11B.1.177.80.000752
ORF1ab/nsp31442P1442delCCT---11B.1.177.830.001481
ORF1ab/nsp31442P1442delCCT---11B.1.177.90.001332
ORF1ab/nsp31442P1442del1ccTcc-11B.1.20.000009
ORF1ab/nsp31442P1442TCctAct11B.1.20.000009
ORF1ab/nsp31442P1442SCctTct11B.1.2210.000071
ORF1ab/nsp31442P1442ACctGct11B.1.2210.000071
ORF1ab/nsp31442P1442LcCtcTt11B.1.2210.000071
ORF1ab/nsp31442P1442HcCtcAt11B.1.2340.000132
ORF1ab/nsp31442P1442SCctTct11B.1.2340.000132
ORF1ab/nsp31442P1442LcCtcTt11B.1.2390.001221
ORF1ab/nsp31442P1442PccTccA11B.1.2580.000067
ORF1ab/nsp31442P1442delCCT---11B.1.258.100.011364
ORF1ab/nsp31442P1442LcCtcTt11B.1.258.170.000104
ORF1ab/nsp31442P1442SCctTct11B.1.258.30.001675
ORF1ab/nsp31442P1442del2cCTc--11B.1.2650.001271
ORF1ab/nsp31442P1442LcCtcTt11B.1.3560.001727
ORF1ab/nsp31442P1442delCCT---11B.1.36.170.000494
ORF1ab/nsp31442P1442delCCT---11B.1.36.380.001642
ORF1ab/nsp31442P1442LcCtcTt11B.1.3750.00082
ORF1ab/nsp31442P1442LcCTcTC11B.1.3770.004566
ORF1ab/nsp31442P1442delCCT---11B.1.4150.014286
ORF1ab/nsp31442P1442delCCT---11B.1.416.10.001563
ORF1ab/nsp31442P1442PccTccC11B.1.4220.000812
ORF1ab/nsp31442P1442SCctTct11B.1.4240.008065
ORF1ab/nsp31442P1442PccTccG11B.1.4290.000024
ORF1ab/nsp31442P1442del1ccTcc-11B.1.4290.000024
ORF1ab/nsp31442P1442LcCtcTt11B.1.438.10.000107
ORF1ab/nsp31442P1442SCctTct11B.1.4590.004082
ORF1ab/nsp31442P1442PccTccG11B.1.4620.007246
ORF1ab/nsp31442P1442SCctTct11B.1.466.20.000391
ORF1ab/nsp31442P1442PccTccG11B.1.5640.000426
ORF1ab/nsp31442P1442delCCT---11B.1.5960.000087
ORF1ab/nsp31442P1442HcCtcAt11B.1.5960.000087
ORF1ab/nsp31442P1442HcCtcAt11B.1.6090.000479
ORF1ab/nsp31442P1442LcCtcTt11B.1.6120.002653
ORF1ab/nsp31442P1442SCctTct11B.1.617.10.000129
ORF1ab/nsp31442P1442ICCTATC11B.1.617.10.000129
ORF1ab/nsp31442P1442TCctAct11B.1.617.20.000004
ORF1ab/nsp31442P1442del1Cct-ct11B.1.617.20.000004
ORF1ab/nsp31442P1442delCCT---11B.1.6210.000089
ORF1ab/nsp31442P1442PccTccG11B.1.6280.000352
ORF1ab/nsp31442P1442delCCT---11B.1.6300.005236
ORF1ab/nsp31442P1442LcCtcTt11B.1.6370.000073
ORF1ab/nsp31442P1442SCctTct11B.1.9.50.005682
ORF1ab/nsp31442P1442delCCT---11B.340.013699
ORF1ab/nsp31442P1442SCctTct11B.400.000364
ORF1ab/nsp31442P1442RcCtcGt11C.350.000774
ORF1ab/nsp31442P1442delCCT---11C.360.000911
ORF1ab/nsp31442P1442SCctTct11C.370.000116
ORF1ab/nsp31442P1442TCctAct11D.20.000075
ORF1ab/nsp31442P1442delCCT---11P.1.10.000318
ORF1ab/nsp31442P1442SCctTct11P.1.10.000318
ORF1ab/nsp31442P1442HcCtcAt11P.1.10.000318
ORF1ab/nsp31442P1442SCctTct11P.1.130.000898
ORF1ab/nsp31442P1442SCctTct11P.1.140.000048
ORF1ab/nsp31442P1442delCCT---11P.1.150.000232
ORF1ab/nsp31442P1442SCctTct11P.1.170.000162
ORF1ab/nsp31442P1442SCctTct11P.30.001595
ORF1ab/nsp31442P1442SCctTct11P.70.004367
ORF1ab/nsp31442P1442LcCtcTt11Q.10.000126
ORF1ab/nsp31442P1442SCctTct11Q.10.000126
ORF1ab/nsp31442P1442delCCT---11Q.20.000613
ORF1ab/nsp31442P1442delCCT---11R.20.014493
ORF1ab/nsp31442P1442SCctTct11S.10.00495

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.