CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1442

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31442P1442LP2260LnonsyncCtcTt127912750.9968737043-7045
ORF1ab/nsp31442P1442LP2260LnonsyncCTcTC127940.003127447043-7045
ORF1ab/nsp31442P1442SP2260SnonsynCctTct102110200.9990217043-7045
ORF1ab/nsp31442P1442SP2260SnonsynCcTTcC102110.0009794327043-7045
ORF1ab/nsp31442P1442PP2260PsynccTccC9095100.5610567043-7045
ORF1ab/nsp31442P1442PP2260PsynccTccG9093920.4312437043-7045
ORF1ab/nsp31442P1442PP2260PsynccTccA90970.007700777043-7045
ORF1ab/nsp31442P1442delP2260deldelCCT---20420417043-7045
ORF1ab/nsp31442P1442HP2260HnonsyncCtcAt1401390.9928577043-7045
ORF1ab/nsp31442P1442HP2260HnonsyncCTcAC14010.007142867043-7045
ORF1ab/nsp31442P1442TP2260TnonsynCctAct30290.9666677043-7045
ORF1ab/nsp31442P1442TP2260TnonsynCcTAcA3010.03333337043-7045
ORF1ab/nsp31442P1442del1P2260del1delCct-ct1260.57043-7045
ORF1ab/nsp31442P1442del1P2260del1delccTcc-1250.4166677043-7045
ORF1ab/nsp31442P1442del1P2260del1delCcT-cC1210.08333337043-7045
ORF1ab/nsp31442P1442AP2260AnonsynCctGct540.87043-7045
ORF1ab/nsp31442P1442AP2260AnonsynCcTGcC510.27043-7045
ORF1ab/nsp31442P1442FP2260FnonsynCCtTTt430.757043-7045
ORF1ab/nsp31442P1442FP2260FnonsynCCTTTC410.257043-7045
ORF1ab/nsp31442P1442del2P2260del2delcCTc--2217043-7045
ORF1ab/nsp31442P1442YP2260YnonsynCCtTAt210.57043-7045
ORF1ab/nsp31442P1442YP2260YnonsynCCTTAC210.57043-7045
ORF1ab/nsp31442P1442VP2260VnonsynCCtGTt210.57043-7045
ORF1ab/nsp31442P1442VP2260VnonsynCCTGTC210.57043-7045
ORF1ab/nsp31442P1442IP2260InonsynCCTATC1117043-7045
ORF1ab/nsp31442P1442RP2260RnonsyncCtcGt1117043-7045
ORF1ab/nsp31442P1442QP2260QnonsyncCTcAA1117043-7045
ORF1ab/nsp31442P1442GP2260GnonsynCCTGGG1117043-7045

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31442P1442LcCtcTt12751279All0.000244
ORF1ab/nsp31442P1442LcCTcTC41279All0.000001
ORF1ab/nsp31442P1442SCctTct10201021All0.000195
ORF1ab/nsp31442P1442SCcTTcC11021All0
ORF1ab/nsp31442P1442PccTccC510909All0.000098
ORF1ab/nsp31442P1442PccTccG392909All0.000075
ORF1ab/nsp31442P1442PccTccA7909All0.000001
ORF1ab/nsp31442P1442LcCtcTt737738B.1.177.580.981358
ORF1ab/nsp31442P1442LcCTcTC1738B.1.177.580.001332
ORF1ab/nsp31442P1442SCctTct283283P.60.889937
ORF1ab/nsp31442P1442PccTccC195246B.1.1.70.000175
ORF1ab/nsp31442P1442PccTccG50246B.1.1.70.000045
ORF1ab/nsp31442P1442PccTccA1246B.1.1.70.000001
ORF1ab/nsp31442P1442delCCT---204204All0.000039
ORF1ab/nsp31442P1442PccTccC163185AY.30.001621
ORF1ab/nsp31442P1442PccTccG22185AY.30.000219
ORF1ab/nsp31442P1442SCctTct150150B.1.1.70.000134
ORF1ab/nsp31442P1442HcCtcAt139140All0.000027
ORF1ab/nsp31442P1442HcCTcAC1140All0
ORF1ab/nsp31442P1442SCctTct134134AY.40.000209
ORF1ab/nsp31442P1442LcCtcTt104104B.1.1.70.000093
ORF1ab/nsp31442P1442LcCtcTt9191B.1.20.000801
ORF1ab/nsp31442P1442delCCT---7979B.1.1.70.000071
ORF1ab/nsp31442P1442PccTccG7078AY.440.000426
ORF1ab/nsp31442P1442PccTccC878AY.440.000049
ORF1ab/nsp31442P1442LcCtcTt5959AY.1030.000366
ORF1ab/nsp31442P1442SCctTct5656B.1.3690.015973
ORF1ab/nsp31442P1442PccTccG4245AY.250.000253
ORF1ab/nsp31442P1442PccTccC345AY.250.000018
ORF1ab/nsp31442P1442HcCtcAt3939AY.40.000061
ORF1ab/nsp31442P1442PccTccG3637AY.1020.000955
ORF1ab/nsp31442P1442PccTccC137AY.1020.000027
ORF1ab/nsp31442P1442LcCtcTt3737C.36.30.020987
ORF1ab/nsp31442P1442PccTccG3234AY.1030.000199
ORF1ab/nsp31442P1442PccTccC234AY.1030.000012
ORF1ab/nsp31442P1442PccTccC3333B.1.1.5190.00131
ORF1ab/nsp31442P1442LcCtcTt3333B.1.4290.000776
ORF1ab/nsp31442P1442SCctTct3232B.1.1.2970.071588
ORF1ab/nsp31442P1442SCctTct3232B.1.2390.039072
ORF1ab/nsp31442P1442TCctAct2930All0.000006
ORF1ab/nsp31442P1442TCcTAcA130All0
ORF1ab/nsp31442P1442PccTccC2426AY.50.000496
ORF1ab/nsp31442P1442PccTccG226AY.50.000041
ORF1ab/nsp31442P1442SCctTct2626B.1.617.20.000098
ORF1ab/nsp31442P1442PccTccG2225B.1.617.20.000083
ORF1ab/nsp31442P1442PccTccC325B.1.617.20.000011
ORF1ab/nsp31442P1442LcCtcTt2323AY.40.000036
ORF1ab/nsp31442P1442SCctTct2323B.1.258.170.002391
ORF1ab/nsp31442P1442SCctTct2020B.1.10.000363
ORF1ab/nsp31442P1442SCctTct1818B.1.20.000158
ORF1ab/nsp31442P1442LcCtcTt1818B.1.617.20.000068
ORF1ab/nsp31442P1442PccTccG1216AY.1190.000424
ORF1ab/nsp31442P1442PccTccC416AY.1190.000141
ORF1ab/nsp31442P1442LcCtcTt1616AY.330.001068
ORF1ab/nsp31442P1442PccTccC1616AY.740.00185
ORF1ab/nsp31442P1442SCctTct1616B.10.000147
ORF1ab/nsp31442P1442LcCtcTt1516B.10.000137
ORF1ab/nsp31442P1442LcCTcTC116B.10.000009
ORF1ab/nsp31442P1442HcCtcAt1616B.1.1.70.000014
ORF1ab/nsp31442P1442PccTccC1515R.10.00135
ORF1ab/nsp31442P1442SCctTct1414AY.1030.000087
ORF1ab/nsp31442P1442HcCtcAt1313AY.1030.000081
ORF1ab/nsp31442P1442SCctTct1313AY.440.000079
ORF1ab/nsp31442P1442delCCT---1313B.1.1770.000171
ORF1ab/nsp31442P1442LcCtcTt1313B.1.1770.000171
ORF1ab/nsp31442P1442del1Cct-ct612All0.000001
ORF1ab/nsp31442P1442del1ccTcc-512All0.000001
ORF1ab/nsp31442P1442del1CcT-cC112All0
ORF1ab/nsp31442P1442delCCT---1212AY.40.000019
ORF1ab/nsp31442P1442SCctTct1212B.1.4270.000606
ORF1ab/nsp31442P1442SCctTct1111B.1.2580.000732
ORF1ab/nsp31442P1442HcCtcAt1111B.1.617.20.000041
ORF1ab/nsp31442P1442LcCtcTt1010AY.46.40.001645
ORF1ab/nsp31442P1442PccTccG810B.10.000073
ORF1ab/nsp31442P1442PccTccC110B.10.000009
ORF1ab/nsp31442P1442PccTccA110B.10.000009
ORF1ab/nsp31442P1442SCctTct1010B.1.1770.000132
ORF1ab/nsp31442P1442LcCtcTt99AY.1020.000239
ORF1ab/nsp31442P1442LcCtcTt99AY.30.00009
ORF1ab/nsp31442P1442PccTccG79AY.40.000011
ORF1ab/nsp31442P1442PccTccA19AY.40.000002
ORF1ab/nsp31442P1442PccTccC19AY.40.000002
ORF1ab/nsp31442P1442SCctTct99AY.430.00004
ORF1ab/nsp31442P1442TCctAct99B.1.177.70.001484
ORF1ab/nsp31442P1442HcCtcAt88AY.250.000048
ORF1ab/nsp31442P1442PccTccG78AY.260.000198
ORF1ab/nsp31442P1442PccTccC18AY.260.000028
ORF1ab/nsp31442P1442delCCT---88B.10.000073
ORF1ab/nsp31442P1442PccTccG77AY.1000.000322
ORF1ab/nsp31442P1442PccTccG77AY.200.000272
ORF1ab/nsp31442P1442SCctTct77B.1.4290.000165
ORF1ab/nsp31442P1442PccTccC77Q.80.001154
ORF1ab/nsp31442P1442SCctTct66AY.250.000036
ORF1ab/nsp31442P1442LcCtcTt66AY.250.000036
ORF1ab/nsp31442P1442LcCtcTt66AY.290.000095
ORF1ab/nsp31442P1442PccTccG66AY.390.000148
ORF1ab/nsp31442P1442delCCT---66AY.4.50.000645
ORF1ab/nsp31442P1442PccTccG66AY.430.000027
ORF1ab/nsp31442P1442delCCT---66AY.430.000027
ORF1ab/nsp31442P1442PccTccG66AY.46.40.000987
ORF1ab/nsp31442P1442SCctTct66AY.690.00112
ORF1ab/nsp31442P1442PccTccG66B.1.6370.000438
ORF1ab/nsp31442P1442HcCtcAt66P.10.000095
ORF1ab/nsp31442P1442SCctTct66P.1.100.001617
ORF1ab/nsp31442P1442ACctGct45All0.000001
ORF1ab/nsp31442P1442ACcTGcC15All0
ORF1ab/nsp31442P1442HcCtcAt55AY.1020.000133
ORF1ab/nsp31442P1442SCctTct55AY.1130.000712
ORF1ab/nsp31442P1442LcCtcTt55AY.340.000485
ORF1ab/nsp31442P1442LcCtcTt55AY.39.10.000198
ORF1ab/nsp31442P1442LcCtcTt55AY.430.000022
ORF1ab/nsp31442P1442PccTccG55AY.9.10.000419
ORF1ab/nsp31442P1442PccTccC55B.1.10.000091
ORF1ab/nsp31442P1442delCCT---55B.1.10.000091
ORF1ab/nsp31442P1442LcCtcTt55B.1.177.810.000947
ORF1ab/nsp31442P1442HcCtcAt55B.1.20.000044
ORF1ab/nsp31442P1442SCctTct55B.1.5260.000118
ORF1ab/nsp31442P1442LcCtcTt55B.1.5960.000436
ORF1ab/nsp31442P1442PccTccC240.111111
ORF1ab/nsp31442P1442PccTccA240.111111
ORF1ab/nsp31442P1442FCCtTTt34All0.000001
ORF1ab/nsp31442P1442FCCTTTC14All0
ORF1ab/nsp31442P1442SCctTct44AY.1020.000106
ORF1ab/nsp31442P1442SCctTct44AY.30.00004
ORF1ab/nsp31442P1442SCctTct44AY.4.20.000087
ORF1ab/nsp31442P1442SCctTct44AY.410.001176
ORF1ab/nsp31442P1442SCctTct44AY.450.000487
ORF1ab/nsp31442P1442PccTccG44AY.470.000124
ORF1ab/nsp31442P1442PccTccC44AY.570.002625
ORF1ab/nsp31442P1442LcCtcTt44B.1.10.000073
ORF1ab/nsp31442P1442LcCtcTt44B.1.1.2070.004728
ORF1ab/nsp31442P1442SCctTct44P.10.000063
ORF1ab/nsp31442P1442LcCtcTt44P.10.000063
ORF1ab/nsp31442P1442LcCtcTt230.111111
ORF1ab/nsp31442P1442LcCTcTC130.055556
ORF1ab/nsp31442P1442HcCtcAt33AY.1130.000427
ORF1ab/nsp31442P1442PccTccG33AY.1170.000254
ORF1ab/nsp31442P1442delCCT---33AY.250.000018
ORF1ab/nsp31442P1442SCctTct33AY.260.000085
ORF1ab/nsp31442P1442SCctTct33AY.330.0002
ORF1ab/nsp31442P1442TCctAct33AY.40.000005
ORF1ab/nsp31442P1442HcCtcAt33AY.440.000018
ORF1ab/nsp31442P1442LcCtcTt33AY.440.000018
ORF1ab/nsp31442P1442PccTccG33AY.610.000314
ORF1ab/nsp31442P1442SCctTct33AY.750.000168
ORF1ab/nsp31442P1442TCctAct33B.10.000027
ORF1ab/nsp31442P1442ACctGct23B.10.000018
ORF1ab/nsp31442P1442ACcTGcC13B.10.000009
ORF1ab/nsp31442P1442SCctTct33B.1.1.280.000934
ORF1ab/nsp31442P1442SCctTct33B.1.1.5190.000119
ORF1ab/nsp31442P1442LcCtcTt33B.1.1.540.009063
ORF1ab/nsp31442P1442HcCtcAt33B.1.177.100.002634
ORF1ab/nsp31442P1442PccTccC33B.1.20.000026
ORF1ab/nsp31442P1442delCCT---33B.1.2210.000213
ORF1ab/nsp31442P1442LcCtcTt33B.1.36.10.003421
ORF1ab/nsp31442P1442HcCtcAt33B.1.36.270.00229
ORF1ab/nsp31442P1442HcCtcAt33B.1.36.80.003
ORF1ab/nsp31442P1442SCctTct33B.1.3960.002117
ORF1ab/nsp31442P1442LcCtcTt33B.1.4270.000151
ORF1ab/nsp31442P1442delCCT---33B.1.617.20.000011
ORF1ab/nsp31442P1442SCctTct33D.20.000225
ORF1ab/nsp31442P1442delCCT---220.111111
ORF1ab/nsp31442P1442HcCTcAC120.055556
ORF1ab/nsp31442P1442SCcTTcC120.055556
ORF1ab/nsp31442P1442YCCtTAt120.055556
ORF1ab/nsp31442P1442FCCtTTt120.055556
ORF1ab/nsp31442P1442HcCtcAt120.055556
ORF1ab/nsp31442P1442SCctTct120.055556
ORF1ab/nsp31442P1442FCCTTTC120.055556
ORF1ab/nsp31442P1442YCCTTAC120.055556
ORF1ab/nsp31442P1442SCctTct22AB.10.016393
ORF1ab/nsp31442P1442del2cCTc--22All0
ORF1ab/nsp31442P1442VCCTGTC12All0
ORF1ab/nsp31442P1442YCCTTAC12All0
ORF1ab/nsp31442P1442YCCtTAt12All0
ORF1ab/nsp31442P1442VCCtGTt12All0
ORF1ab/nsp31442P1442SCctTct22AY.1190.000071
ORF1ab/nsp31442P1442SCctTct22AY.1200.000074
ORF1ab/nsp31442P1442PccTccG22AY.190.002281
ORF1ab/nsp31442P1442SCctTct22AY.200.000078
ORF1ab/nsp31442P1442HcCtcAt22AY.30.00002
ORF1ab/nsp31442P1442TCctAct22AY.30.00002
ORF1ab/nsp31442P1442PccTccG22AY.3.10.000171
ORF1ab/nsp31442P1442SCctTct22AY.310.037037
ORF1ab/nsp31442P1442PccTccG22AY.350.000466
ORF1ab/nsp31442P1442HcCtcAt22AY.4.20.000043
ORF1ab/nsp31442P1442LcCtcTt22AY.420.00008
ORF1ab/nsp31442P1442del1Cct-ct12AY.430.000004
ORF1ab/nsp31442P1442del1ccTcc-12AY.430.000004
ORF1ab/nsp31442P1442TCctAct22AY.440.000012
ORF1ab/nsp31442P1442PccTccG22AY.460.000208
ORF1ab/nsp31442P1442SCctTct22AY.470.000062
ORF1ab/nsp31442P1442delCCT---22AY.50.000041
ORF1ab/nsp31442P1442LcCtcTt22AY.520.001629
ORF1ab/nsp31442P1442PccTccG22AY.540.000191
ORF1ab/nsp31442P1442PccTccC22AY.730.001331
ORF1ab/nsp31442P1442PccTccC22AY.9.20.000073
ORF1ab/nsp31442P1442SCctTct22AY.99.20.000184
ORF1ab/nsp31442P1442HcCtcAt22B.10.000018
ORF1ab/nsp31442P1442HcCtcAt22B.1.10.000036
ORF1ab/nsp31442P1442LcCtcTt22B.1.1.2140.000111
ORF1ab/nsp31442P1442LcCtcTt22B.1.1.3010.002358
ORF1ab/nsp31442P1442SCctTct22B.1.1.3050.007722
ORF1ab/nsp31442P1442LcCtcTt22B.1.1.3350.025974
ORF1ab/nsp31442P1442TCctAct22B.1.1.70.000002
ORF1ab/nsp31442P1442PccTccC22B.1.1770.000026
ORF1ab/nsp31442P1442SCctTct22B.1.177.180.00232
ORF1ab/nsp31442P1442delCCT---22B.1.177.40.000422
ORF1ab/nsp31442P1442delCCT---22B.1.177.570.000562
ORF1ab/nsp31442P1442delCCT---22B.1.177.70.00033
ORF1ab/nsp31442P1442delCCT---22B.1.177.870.001456
ORF1ab/nsp31442P1442SCctTct22B.1.2430.000139
ORF1ab/nsp31442P1442PccTccG12B.1.2430.00007
ORF1ab/nsp31442P1442PccTccC12B.1.2430.00007
ORF1ab/nsp31442P1442SCctTct22B.1.3510.000059
ORF1ab/nsp31442P1442LcCtcTt22B.1.3610.002577
ORF1ab/nsp31442P1442SCctTct22B.1.3670.001585
ORF1ab/nsp31442P1442TCctAct22B.1.438.10.000215
ORF1ab/nsp31442P1442delCCT---22B.1.5250.000226
ORF1ab/nsp31442P1442PccTccG22B.1.5260.000047
ORF1ab/nsp31442P1442SCctTct22B.1.5930.021739
ORF1ab/nsp31442P1442SCctTct22B.1.6090.000959
ORF1ab/nsp31442P1442PccTccG12B.1.6210.000089
ORF1ab/nsp31442P1442PccTccC12B.1.6210.000089
ORF1ab/nsp31442P1442SCctTct22B.1.6370.000146
ORF1ab/nsp31442P1442delCCT---22P.10.000032
ORF1ab/nsp31442P1442PccTccC22P.10.000032
ORF1ab/nsp31442P1442delCCT---22U.30.007722
ORF1ab/nsp31442P1442SCctTct11A0.000387
ORF1ab/nsp31442P1442delCCT---11A0.000387
ORF1ab/nsp31442P1442PccTccC11A.23.10.000704
ORF1ab/nsp31442P1442PccTccC11A.270.001656
ORF1ab/nsp31442P1442delCCT---11A.280.002646
ORF1ab/nsp31442P1442SCctTct11AE.80.000489
ORF1ab/nsp31442P1442GCCTGGG11All0
ORF1ab/nsp31442P1442QcCTcAA11All0
ORF1ab/nsp31442P1442RcCtcGt11All0
ORF1ab/nsp31442P1442ICCTATC11All0
ORF1ab/nsp31442P1442PccTccC11AY.10.000396
ORF1ab/nsp31442P1442TCctAct11AY.1000.000046
ORF1ab/nsp31442P1442HcCtcAt11AY.1000.000046
ORF1ab/nsp31442P1442SCctTct11AY.1000.000046
ORF1ab/nsp31442P1442del1Cct-ct11AY.1020.000027
ORF1ab/nsp31442P1442delCCT---11AY.1030.000006
ORF1ab/nsp31442P1442LcCtcTt11AY.1080.001103
ORF1ab/nsp31442P1442PccTccG11AY.1090.00074
ORF1ab/nsp31442P1442PccTccG11AY.1100.000113
ORF1ab/nsp31442P1442PccTccG11AY.1130.000142
ORF1ab/nsp31442P1442PccTccG11AY.1140.000231
ORF1ab/nsp31442P1442SCctTct11AY.1170.000085
ORF1ab/nsp31442P1442PccTccG11AY.1180.000063
ORF1ab/nsp31442P1442LcCtcTt11AY.1180.000063
ORF1ab/nsp31442P1442delCCT---11AY.1190.000035
ORF1ab/nsp31442P1442delCCT---11AY.1200.000037
ORF1ab/nsp31442P1442del1Cct-ct11AY.120.10.000321
ORF1ab/nsp31442P1442SCctTct11AY.160.00038
ORF1ab/nsp31442P1442SCctTct11AY.16.10.00047
ORF1ab/nsp31442P1442delCCT---11AY.190.00114
ORF1ab/nsp31442P1442LcCtcTt11AY.200.000039
ORF1ab/nsp31442P1442GCCTGGG11AY.250.000006
ORF1ab/nsp31442P1442VCCTGTC11AY.250.000006
ORF1ab/nsp31442P1442LcCtcTt11AY.260.000028
ORF1ab/nsp31442P1442del1ccTcc-11AY.260.000028
ORF1ab/nsp31442P1442PccTccC11AY.270.000065
ORF1ab/nsp31442P1442HcCtcAt11AY.3.10.000085
ORF1ab/nsp31442P1442SCctTct11AY.300.000396
ORF1ab/nsp31442P1442del1Cct-ct11AY.330.000067
ORF1ab/nsp31442P1442SCctTct11AY.340.000097
ORF1ab/nsp31442P1442LcCtcTt11AY.34.10.00051
ORF1ab/nsp31442P1442HcCtcAt11AY.350.000233
ORF1ab/nsp31442P1442delCCT---11AY.360.000148
ORF1ab/nsp31442P1442PccTccG11AY.360.000148
ORF1ab/nsp31442P1442PccTccG11AY.370.000316
ORF1ab/nsp31442P1442SCctTct11AY.390.000025
ORF1ab/nsp31442P1442HcCtcAt11AY.39.10.00004
ORF1ab/nsp31442P1442del1CcT-cC11AY.40.000002
ORF1ab/nsp31442P1442FCCtTTt11AY.40.000002
ORF1ab/nsp31442P1442SCctTct11AY.4.2.10.000149
ORF1ab/nsp31442P1442SCctTct11AY.4.30.000842
ORF1ab/nsp31442P1442delCCT---11AY.420.00004
ORF1ab/nsp31442P1442SCctTct11AY.420.00004
ORF1ab/nsp31442P1442PccTccG11AY.420.00004
ORF1ab/nsp31442P1442FCCtTTt11AY.430.000004
ORF1ab/nsp31442P1442LcCtcTt11AY.450.000122
ORF1ab/nsp31442P1442SCctTct11AY.46.60.000072
ORF1ab/nsp31442P1442LcCtcTt11AY.470.000031
ORF1ab/nsp31442P1442delCCT---11AY.5.30.000337
ORF1ab/nsp31442P1442PccTccG11AY.5.30.000337
ORF1ab/nsp31442P1442PccTccG11AY.560.001605
ORF1ab/nsp31442P1442SCctTct11AY.60.000041
ORF1ab/nsp31442P1442delCCT---11AY.60.000041
ORF1ab/nsp31442P1442LcCtcTt11AY.60.000041
ORF1ab/nsp31442P1442delCCT---11AY.600.000938
ORF1ab/nsp31442P1442PccTccC11AY.630.000387
ORF1ab/nsp31442P1442HcCtcAt11AY.650.000533
ORF1ab/nsp31442P1442delCCT---11AY.70.000196
ORF1ab/nsp31442P1442delCCT---11AY.7.20.000559
ORF1ab/nsp31442P1442delCCT---11AY.720.001361
ORF1ab/nsp31442P1442LcCtcTt11AY.740.000116
ORF1ab/nsp31442P1442TCctAct11AY.750.000056
ORF1ab/nsp31442P1442SCctTct11AY.75.10.00018
ORF1ab/nsp31442P1442LcCtcTt11AY.790.001211
ORF1ab/nsp31442P1442HcCtcAt11AY.790.001211
ORF1ab/nsp31442P1442SCctTct11AY.820.001357
ORF1ab/nsp31442P1442SCctTct11AY.870.000833
ORF1ab/nsp31442P1442SCctTct11AY.90.000068
ORF1ab/nsp31442P1442SCctTct11AY.9.20.000037
ORF1ab/nsp31442P1442delCCT---11AY.9.20.000037
ORF1ab/nsp31442P1442LcCtcTt11AY.9.20.000037
ORF1ab/nsp31442P1442PccTccA11AY.910.00073
ORF1ab/nsp31442P1442delCCT---11AY.98.10.000048
ORF1ab/nsp31442P1442delCCT---11AY.99.10.001553
ORF1ab/nsp31442P1442PccTccC11B0.000128
ORF1ab/nsp31442P1442delCCT---11B0.000128
ORF1ab/nsp31442P1442QcCTcAA11B.10.000009
ORF1ab/nsp31442P1442SCctTct11B.1.1.1290.009174
ORF1ab/nsp31442P1442SCctTct11B.1.1.1810.004545
ORF1ab/nsp31442P1442HcCtcAt11B.1.1.2070.001182
ORF1ab/nsp31442P1442TCcTAcA11B.1.1.2160.00089
ORF1ab/nsp31442P1442delCCT---11B.1.1.2210.010101
ORF1ab/nsp31442P1442LcCtcTt11B.1.1.2220.000204
ORF1ab/nsp31442P1442delCCT---11B.1.1.2360.006897
ORF1ab/nsp31442P1442SCctTct11B.1.1.2400.004695
ORF1ab/nsp31442P1442SCctTct11B.1.1.250.000569
ORF1ab/nsp31442P1442SCctTct11B.1.1.2650.003155
ORF1ab/nsp31442P1442del1ccTcc-11B.1.1.280.000311
ORF1ab/nsp31442P1442VCCtGTt11B.1.1.280.000311
ORF1ab/nsp31442P1442TCctAct11B.1.1.280.000311
ORF1ab/nsp31442P1442SCctTct11B.1.1.2840.000107
ORF1ab/nsp31442P1442PccTccC11B.1.1.2940.001266
ORF1ab/nsp31442P1442SCctTct11B.1.1.3060.000438
ORF1ab/nsp31442P1442LcCtcTt11B.1.1.3680.003086
ORF1ab/nsp31442P1442PccTccG11B.1.1.3690.000446
ORF1ab/nsp31442P1442SCctTct11B.1.1.4610.012048
ORF1ab/nsp31442P1442LcCtcTt11B.1.1.5070.008696
ORF1ab/nsp31442P1442delCCT---11B.1.1.510.001718
ORF1ab/nsp31442P1442LcCtcTt11B.1.1.5190.00004
ORF1ab/nsp31442P1442SCctTct11B.1.1.670.004566
ORF1ab/nsp31442P1442del1Cct-ct11B.1.1.70.000001
ORF1ab/nsp31442P1442ACctGct11B.1.1.70.000001
ORF1ab/nsp31442P1442delCCT---11B.1.1.700.000341
ORF1ab/nsp31442P1442SCctTct11B.1.1080.005814
ORF1ab/nsp31442P1442SCctTct11B.1.110.30.000718
ORF1ab/nsp31442P1442LcCtcTt11B.1.1600.000031
ORF1ab/nsp31442P1442delCCT---11B.1.1600.000031
ORF1ab/nsp31442P1442PccTccC11B.1.160.130.027778
ORF1ab/nsp31442P1442delCCT---11B.1.160.70.002079
ORF1ab/nsp31442P1442HcCtcAt11B.1.1770.000013
ORF1ab/nsp31442P1442del2cCTc--11B.1.1770.000013
ORF1ab/nsp31442P1442delCCT---11B.1.177.150.000631
ORF1ab/nsp31442P1442delCCT---11B.1.177.160.000664
ORF1ab/nsp31442P1442delCCT---11B.1.177.190.001431
ORF1ab/nsp31442P1442delCCT---11B.1.177.210.000076
ORF1ab/nsp31442P1442LcCtcTt11B.1.177.540.000606
ORF1ab/nsp31442P1442delCCT---11B.1.177.60.000977
ORF1ab/nsp31442P1442delCCT---11B.1.177.620.001192
ORF1ab/nsp31442P1442SCctTct11B.1.177.670.007634
ORF1ab/nsp31442P1442delCCT---11B.1.177.680.015152
ORF1ab/nsp31442P1442delCCT---11B.1.177.760.002494
ORF1ab/nsp31442P1442SCctTct11B.1.177.80.000752
ORF1ab/nsp31442P1442delCCT---11B.1.177.830.001481
ORF1ab/nsp31442P1442delCCT---11B.1.177.90.001332
ORF1ab/nsp31442P1442del1ccTcc-11B.1.20.000009
ORF1ab/nsp31442P1442TCctAct11B.1.20.000009
ORF1ab/nsp31442P1442SCctTct11B.1.2210.000071
ORF1ab/nsp31442P1442ACctGct11B.1.2210.000071
ORF1ab/nsp31442P1442LcCtcTt11B.1.2210.000071
ORF1ab/nsp31442P1442HcCtcAt11B.1.2340.000132
ORF1ab/nsp31442P1442SCctTct11B.1.2340.000132
ORF1ab/nsp31442P1442LcCtcTt11B.1.2390.001221
ORF1ab/nsp31442P1442PccTccA11B.1.2580.000067
ORF1ab/nsp31442P1442delCCT---11B.1.258.100.011364
ORF1ab/nsp31442P1442LcCtcTt11B.1.258.170.000104
ORF1ab/nsp31442P1442SCctTct11B.1.258.30.001675
ORF1ab/nsp31442P1442del2cCTc--11B.1.2650.001271
ORF1ab/nsp31442P1442LcCtcTt11B.1.3560.001727
ORF1ab/nsp31442P1442delCCT---11B.1.36.170.000494
ORF1ab/nsp31442P1442delCCT---11B.1.36.380.001642
ORF1ab/nsp31442P1442LcCtcTt11B.1.3750.00082
ORF1ab/nsp31442P1442LcCTcTC11B.1.3770.004566
ORF1ab/nsp31442P1442delCCT---11B.1.4150.014286
ORF1ab/nsp31442P1442delCCT---11B.1.416.10.001563
ORF1ab/nsp31442P1442PccTccC11B.1.4220.000812
ORF1ab/nsp31442P1442SCctTct11B.1.4240.008065
ORF1ab/nsp31442P1442PccTccG11B.1.4290.000024
ORF1ab/nsp31442P1442del1ccTcc-11B.1.4290.000024
ORF1ab/nsp31442P1442LcCtcTt11B.1.438.10.000107
ORF1ab/nsp31442P1442SCctTct11B.1.4590.004082
ORF1ab/nsp31442P1442PccTccG11B.1.4620.007246
ORF1ab/nsp31442P1442SCctTct11B.1.466.20.000391
ORF1ab/nsp31442P1442PccTccG11B.1.5640.000426
ORF1ab/nsp31442P1442delCCT---11B.1.5960.000087
ORF1ab/nsp31442P1442HcCtcAt11B.1.5960.000087
ORF1ab/nsp31442P1442HcCtcAt11B.1.6090.000479
ORF1ab/nsp31442P1442LcCtcTt11B.1.6120.002653
ORF1ab/nsp31442P1442SCctTct11B.1.617.10.000129
ORF1ab/nsp31442P1442ICCTATC11B.1.617.10.000129
ORF1ab/nsp31442P1442TCctAct11B.1.617.20.000004
ORF1ab/nsp31442P1442del1Cct-ct11B.1.617.20.000004
ORF1ab/nsp31442P1442delCCT---11B.1.6210.000089
ORF1ab/nsp31442P1442PccTccG11B.1.6280.000352
ORF1ab/nsp31442P1442delCCT---11B.1.6300.005236
ORF1ab/nsp31442P1442LcCtcTt11B.1.6370.000073
ORF1ab/nsp31442P1442SCctTct11B.1.9.50.005682
ORF1ab/nsp31442P1442delCCT---11B.340.013699
ORF1ab/nsp31442P1442SCctTct11B.400.000364
ORF1ab/nsp31442P1442RcCtcGt11C.350.000774
ORF1ab/nsp31442P1442delCCT---11C.360.000911
ORF1ab/nsp31442P1442SCctTct11C.370.000116
ORF1ab/nsp31442P1442TCctAct11D.20.000075
ORF1ab/nsp31442P1442delCCT---11P.1.10.000318
ORF1ab/nsp31442P1442SCctTct11P.1.10.000318
ORF1ab/nsp31442P1442HcCtcAt11P.1.10.000318
ORF1ab/nsp31442P1442SCctTct11P.1.130.000898
ORF1ab/nsp31442P1442SCctTct11P.1.140.000048
ORF1ab/nsp31442P1442delCCT---11P.1.150.000232
ORF1ab/nsp31442P1442SCctTct11P.1.170.000162
ORF1ab/nsp31442P1442SCctTct11P.30.001595
ORF1ab/nsp31442P1442SCctTct11P.70.004367
ORF1ab/nsp31442P1442LcCtcTt11Q.10.000126
ORF1ab/nsp31442P1442SCctTct11Q.10.000126
ORF1ab/nsp31442P1442delCCT---11Q.20.000613
ORF1ab/nsp31442P1442delCCT---11R.20.014493
ORF1ab/nsp31442P1442SCctTct11S.10.00495