CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1431

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31431A1431VA2249VnonsyngCtgTt5211521117010-7012
ORF1ab/nsp31431A1431AA2249AsyngcTgcC3041480.4868427010-7012
ORF1ab/nsp31431A1431AA2249AsyngcTgcA304810.2664477010-7012
ORF1ab/nsp31431A1431AA2249AsyngcTgcG304750.2467117010-7012
ORF1ab/nsp31431A1431delA2249deldelGCT---23223217010-7012
ORF1ab/nsp31431A1431TA2249TnonsynGctAct2262250.9955757010-7012
ORF1ab/nsp31431A1431TA2249TnonsynGcTAcC22610.004424787010-7012
ORF1ab/nsp31431A1431SA2249SnonsynGctTct1151130.9826097010-7012
ORF1ab/nsp31431A1431SA2249SnonsynGcTTcA11520.01739137010-7012
ORF1ab/nsp31431A1431DA2249DnonsyngCtgAt414117010-7012
ORF1ab/nsp31431A1431del1A2249del1delgcTgc-17120.7058827010-7012
ORF1ab/nsp31431A1431del1A2249del1delGct-ct1750.2941187010-7012
ORF1ab/nsp31431A1431GA2249GnonsyngCtgGt131317010-7012
ORF1ab/nsp31431A1431PA2249PnonsynGctCct870.8757010-7012
ORF1ab/nsp31431A1431PA2249PnonsynGcTCcA810.1257010-7012
ORF1ab/nsp31431A1431EA2249EnonsyngCTgAG1117010-7012
ORF1ab/nsp31431A1431KA2249KnonsynGCTAAG1117010-7012
ORF1ab/nsp31431A1431del2A2249del2delgCTg--1117010-7012
ORF1ab/nsp31431A1431XA2249XnonsynGCTTAA1117010-7012

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31431A1431VgCtgTt52115211All0.000997
ORF1ab/nsp31431A1431VgCtgTt858858B.1.1.70.000768
ORF1ab/nsp31431A1431VgCtgTt803803B.1.20.007071
ORF1ab/nsp31431A1431VgCtgTt363363AY.40.000565
ORF1ab/nsp31431A1431AgcTgcC148304All0.000028
ORF1ab/nsp31431A1431AgcTgcA81304All0.000015
ORF1ab/nsp31431A1431AgcTgcG75304All0.000014
ORF1ab/nsp31431A1431VgCtgTt301301AY.1160.086321
ORF1ab/nsp31431A1431delGCT---232232All0.000044
ORF1ab/nsp31431A1431TGctAct225226All0.000043
ORF1ab/nsp31431A1431TGcTAcC1226All0
ORF1ab/nsp31431A1431VgCtgTt222222B.1.5260.005218
ORF1ab/nsp31431A1431VgCtgTt176176AY.1030.001093
ORF1ab/nsp31431A1431VgCtgTt175175B.1.617.20.000659
ORF1ab/nsp31431A1431VgCtgTt175175B.30.145349
ORF1ab/nsp31431A1431VgCtgTt127127AY.440.000773
ORF1ab/nsp31431A1431VgCtgTt123123AY.430.000545
ORF1ab/nsp31431A1431SGctTct113115All0.000022
ORF1ab/nsp31431A1431SGcTTcA2115All0
ORF1ab/nsp31431A1431VgCtgTt9797B.1.1.2840.010418
ORF1ab/nsp31431A1431delGCT---9191B.1.1.70.000081
ORF1ab/nsp31431A1431VgCtgTt8585AY.50.001755
ORF1ab/nsp31431A1431VgCtgTt8282AY.4.20.001778
ORF1ab/nsp31431A1431VgCtgTt7070B.1.1.5190.00278
ORF1ab/nsp31431A1431TGctAct6868AY.40.000106
ORF1ab/nsp31431A1431VgCtgTt6565B.1.1.700.022169
ORF1ab/nsp31431A1431VgCtgTt6161B.600.968254
ORF1ab/nsp31431A1431VgCtgTt5858AY.470.001804
ORF1ab/nsp31431A1431VgCtgTt5656B.10.000513
ORF1ab/nsp31431A1431TGctAct5454B.1.20.000475
ORF1ab/nsp31431A1431AgcTgcG5152C.370.005919
ORF1ab/nsp31431A1431AgcTgcC152C.370.000116
ORF1ab/nsp31431A1431VgCtgTt4949B.1.160.180.357664
ORF1ab/nsp31431A1431AgcTgcC4447B.1.1.70.000039
ORF1ab/nsp31431A1431AgcTgcG347B.1.1.70.000003
ORF1ab/nsp31431A1431VgCtgTt4646P.10.000725
ORF1ab/nsp31431A1431DgCtgAt4141All0.000008
ORF1ab/nsp31431A1431VgCtgTt4141B.1.5960.003573
ORF1ab/nsp31431A1431VgCtgTt4040B.1.1.140.689655
ORF1ab/nsp31431A1431SGctTct3939AY.9.20.001432
ORF1ab/nsp31431A1431VgCtgTt3737AY.250.000223
ORF1ab/nsp31431A1431AgcTgcA3737B.1.1.621
ORF1ab/nsp31431A1431VgCtgTt3535AY.30.000348
ORF1ab/nsp31431A1431VgCtgTt3535B.1.1770.000461
ORF1ab/nsp31431A1431VgCtgTt3232B.1.10.000581
ORF1ab/nsp31431A1431VgCtgTt3131AY.610.003248
ORF1ab/nsp31431A1431VgCtgTt2727AY.1170.002282
ORF1ab/nsp31431A1431VgCtgTt2626B.1.6190.022648
ORF1ab/nsp31431A1431VgCtgTt2323AY.39.10.000911
ORF1ab/nsp31431A1431AgcTgcA1322B.1.10.000236
ORF1ab/nsp31431A1431AgcTgcC922B.1.10.000163
ORF1ab/nsp31431A1431VgCtgTt2222B.1.4290.000518
ORF1ab/nsp31431A1431VgCtgTt2121AY.290.000331
ORF1ab/nsp31431A1431VgCtgTt2121B.1.177.880.259259
ORF1ab/nsp31431A1431VgCtgTt1919B.1.1.2140.001054
ORF1ab/nsp31431A1431TGctAct1819B.1.1.70.000016
ORF1ab/nsp31431A1431TGcTAcC119B.1.1.70.000001
ORF1ab/nsp31431A1431VgCtgTt1919B.1.177.600.00415
ORF1ab/nsp31431A1431VgCtgTt1818B.1.1600.000561
ORF1ab/nsp31431A1431del1gcTgc-1217All0.000002
ORF1ab/nsp31431A1431del1Gct-ct517All0.000001
ORF1ab/nsp31431A1431delGCT---1616B.1.1770.000211
ORF1ab/nsp31431A1431AgcTgcA1016B.1.20.000088
ORF1ab/nsp31431A1431AgcTgcC616B.1.20.000053
ORF1ab/nsp31431A1431VgCtgTt1616B.1.2210.001137
ORF1ab/nsp31431A1431VgCtgTt1515AY.390.000371
ORF1ab/nsp31431A1431VgCtgTt1515B.1.3510.000446
ORF1ab/nsp31431A1431VgCtgTt1515B.1.36.290.00776
ORF1ab/nsp31431A1431VgCtgTt1414A0.005418
ORF1ab/nsp31431A1431VgCtgTt1414AY.1020.000371
ORF1ab/nsp31431A1431VgCtgTt1414AY.240.006034
ORF1ab/nsp31431A1431delGCT---1414AY.40.000022
ORF1ab/nsp31431A1431DgCtgAt1414AY.430.000062
ORF1ab/nsp31431A1431VgCtgTt1414B0.001789
ORF1ab/nsp31431A1431VgCtgTt1414B.1.2430.000974
ORF1ab/nsp31431A1431AgcTgcC1414P.10.000221
ORF1ab/nsp31431A1431VgCtgTt1414Q.10.001769
ORF1ab/nsp31431A1431GgCtgGt1313All0.000002
ORF1ab/nsp31431A1431VgCtgTt1313AY.260.000368
ORF1ab/nsp31431A1431VgCtgTt1313AY.46.60.000939
ORF1ab/nsp31431A1431VgCtgTt1313B.1.360.001897
ORF1ab/nsp31431A1431VgCtgTt1212AY.230.000837
ORF1ab/nsp31431A1431SGctTct1112B.1.1.70.00001
ORF1ab/nsp31431A1431SGcTTcA112B.1.1.70.000001
ORF1ab/nsp31431A1431VgCtgTt1212B.1.177.810.002272
ORF1ab/nsp31431A1431VgCtgTt1212B.1.36.310.021016
ORF1ab/nsp31431A1431VgCtgTt1212B.1.617.10.001548
ORF1ab/nsp31431A1431VgCtgTt1111AY.1000.000506
ORF1ab/nsp31431A1431VgCtgTt1111B.1.1.330.00463
ORF1ab/nsp31431A1431VgCtgTt1111B.1.3360.026829
ORF1ab/nsp31431A1431VgCtgTt1111B.1.5610.004367
ORF1ab/nsp31431A1431DgCtgAt1111B.1.617.20.000041
ORF1ab/nsp31431A1431TGctAct1111B.1.617.20.000041
ORF1ab/nsp31431A1431VgCtgTt1010AY.1130.001424
ORF1ab/nsp31431A1431VgCtgTt1010AY.600.009381
ORF1ab/nsp31431A1431delGCT---1010B.10.000092
ORF1ab/nsp31431A1431AgcTgcA510B.10.000046
ORF1ab/nsp31431A1431AgcTgcC510B.10.000046
ORF1ab/nsp31431A1431TGctAct1010B.1.10.000181
ORF1ab/nsp31431A1431VgCtgTt1010B.1.1.1570.009132
ORF1ab/nsp31431A1431VgCtgTt1010B.1.177.20.045455
ORF1ab/nsp31431A1431VgCtgTt1010B.1.258.170.00104
ORF1ab/nsp31431A1431SGctTct1010B.1.617.20.000038
ORF1ab/nsp31431A1431TGctAct99AY.1030.000056
ORF1ab/nsp31431A1431VgCtgTt99AY.450.001095
ORF1ab/nsp31431A1431AgcTgcC99B.1.1.3160.008326
ORF1ab/nsp31431A1431AgcTgcA99B.1.1.3830.5625
ORF1ab/nsp31431A1431VgCtgTt99B.1.5230.022059
ORF1ab/nsp31431A1431AgcTgcC99B.1.617.20.000034
ORF1ab/nsp31431A1431VgCtgTt99B.1.6210.000797
ORF1ab/nsp31431A1431PGctCct78All0.000001
ORF1ab/nsp31431A1431PGcTCcA18All0
ORF1ab/nsp31431A1431VgCtgTt88AY.190.009122
ORF1ab/nsp31431A1431AgcTgcC88AY.40.000012
ORF1ab/nsp31431A1431VgCtgTt88AY.4.50.00086
ORF1ab/nsp31431A1431VgCtgTt88B.1.1.3590.222222
ORF1ab/nsp31431A1431VgCtgTt88B.1.4270.000404
ORF1ab/nsp31431A1431VgCtgTt77AY.200.000272
ORF1ab/nsp31431A1431SGctTct77AY.40.000011
ORF1ab/nsp31431A1431VgCtgTt77AY.850.00299
ORF1ab/nsp31431A1431delGCT---77B.1.10.000127
ORF1ab/nsp31431A1431VgCtgTt77B.1.177.210.000535
ORF1ab/nsp31431A1431VgCtgTt77B.1.2320.003761
ORF1ab/nsp31431A1431VgCtgTt77B.1.6280.002467
ORF1ab/nsp31431A1431VgCtgTt77P.1.140.000335
ORF1ab/nsp31431A1431delGCT---660.333333
ORF1ab/nsp31431A1431VgCtgTt66AY.1190.000212
ORF1ab/nsp31431A1431VgCtgTt66AY.120.001896
ORF1ab/nsp31431A1431VgCtgTt66AY.1200.000223
ORF1ab/nsp31431A1431delGCT---66AY.430.000027
ORF1ab/nsp31431A1431TGctAct66AY.430.000027
ORF1ab/nsp31431A1431VgCtgTt66AY.570.003937
ORF1ab/nsp31431A1431VgCtgTt66B.1.177.740.090909
ORF1ab/nsp31431A1431AgcTgcC45AY.430.000018
ORF1ab/nsp31431A1431AgcTgcG15AY.430.000004
ORF1ab/nsp31431A1431VgCtgTt55AY.60.000206
ORF1ab/nsp31431A1431VgCtgTt55AY.680.001369
ORF1ab/nsp31431A1431VgCtgTt55B.1.1.2160.004452
ORF1ab/nsp31431A1431VgCtgTt55B.1.1.3060.002192
ORF1ab/nsp31431A1431VgCtgTt55B.1.3240.008026
ORF1ab/nsp31431A1431SGctTct55D.20.000375
ORF1ab/nsp31431A1431VgCtgTt55D.20.000375
ORF1ab/nsp31431A1431VgCtgTt44AY.10.001583
ORF1ab/nsp31431A1431VgCtgTt44AY.140.000352
ORF1ab/nsp31431A1431VgCtgTt44AY.360.000593
ORF1ab/nsp31431A1431AgcTgcC34AY.390.000074
ORF1ab/nsp31431A1431AgcTgcG14AY.390.000025
ORF1ab/nsp31431A1431TGctAct44AY.4.20.000087
ORF1ab/nsp31431A1431delGCT---44AY.4.50.00043
ORF1ab/nsp31431A1431AgcTgcC34AY.440.000018
ORF1ab/nsp31431A1431AgcTgcG14AY.440.000006
ORF1ab/nsp31431A1431VgCtgTt44AY.460.000416
ORF1ab/nsp31431A1431AgcTgcG44AY.46.50.000794
ORF1ab/nsp31431A1431VgCtgTt44AY.710.0019
ORF1ab/nsp31431A1431VgCtgTt44AY.98.10.000194
ORF1ab/nsp31431A1431VgCtgTt44B.1.1.10.001307
ORF1ab/nsp31431A1431VgCtgTt44B.1.1.1700.004988
ORF1ab/nsp31431A1431VgCtgTt44B.1.1.1890.006051
ORF1ab/nsp31431A1431VgCtgTt44B.1.1.3110.001433
ORF1ab/nsp31431A1431VgCtgTt44B.1.1.3750.047619
ORF1ab/nsp31431A1431VgCtgTt44B.1.160.260.009685
ORF1ab/nsp31431A1431AgcTgcC34B.1.1770.00004
ORF1ab/nsp31431A1431AgcTgcG14B.1.1770.000013
ORF1ab/nsp31431A1431VgCtgTt44B.1.177.860.000734
ORF1ab/nsp31431A1431VgCtgTt44B.1.2340.000528
ORF1ab/nsp31431A1431VgCtgTt44C.370.000464
ORF1ab/nsp31431A1431VgCtgTt44P.20.000747
ORF1ab/nsp31431A1431VgCtgTt44R.10.00036
ORF1ab/nsp31431A1431TGctAct33AY.1130.000427
ORF1ab/nsp31431A1431TGctAct33AY.23.10.001252
ORF1ab/nsp31431A1431AgcTgcC33AY.250.000018
ORF1ab/nsp31431A1431SGctTct33AY.250.000018
ORF1ab/nsp31431A1431VgCtgTt33AY.39.20.004622
ORF1ab/nsp31431A1431SGctTct33AY.430.000013
ORF1ab/nsp31431A1431TGctAct33AY.50.000062
ORF1ab/nsp31431A1431VgCtgTt33AY.5.30.001012
ORF1ab/nsp31431A1431VgCtgTt33AY.550.002752
ORF1ab/nsp31431A1431VgCtgTt33AY.750.000168
ORF1ab/nsp31431A1431VgCtgTt33AY.75.10.000541
ORF1ab/nsp31431A1431VgCtgTt33AY.840.001312
ORF1ab/nsp31431A1431VgCtgTt33AY.9.20.00011
ORF1ab/nsp31431A1431TGctAct33B.10.000027
ORF1ab/nsp31431A1431SGctTct33B.1.10.000054
ORF1ab/nsp31431A1431VgCtgTt33B.1.177.40.000633
ORF1ab/nsp31431A1431delGCT---33B.1.20.000026
ORF1ab/nsp31431A1431del1gcTgc-33B.1.20.000026
ORF1ab/nsp31431A1431delGCT---33B.1.2210.000213
ORF1ab/nsp31431A1431VgCtgTt33B.1.2400.000647
ORF1ab/nsp31431A1431VgCtgTt33B.1.2580.0002
ORF1ab/nsp31431A1431VgCtgTt33B.1.258.140.002941
ORF1ab/nsp31431A1431VgCtgTt33B.1.4040.003906
ORF1ab/nsp31431A1431VgCtgTt33B.1.466.20.001174
ORF1ab/nsp31431A1431VgCtgTt33B.1.564.10.004732
ORF1ab/nsp31431A1431VgCtgTt33B.1.5950.000783
ORF1ab/nsp31431A1431delGCT---33B.1.617.20.000011
ORF1ab/nsp31431A1431VgCtgTt33B.400.001093
ORF1ab/nsp31431A1431delGCT---33U.30.011583
ORF1ab/nsp31431A1431DgCtgAt220.111111
ORF1ab/nsp31431A1431PGctCct120.055556
ORF1ab/nsp31431A1431AgcTgcC120.055556
ORF1ab/nsp31431A1431SGctTct120.055556
ORF1ab/nsp31431A1431PGcTCcA120.055556
ORF1ab/nsp31431A1431SGcTTcA120.055556
ORF1ab/nsp31431A1431AgcTgcA120.055556
ORF1ab/nsp31431A1431AgcTgcA12AY.1030.000006
ORF1ab/nsp31431A1431AgcTgcC12AY.1030.000006
ORF1ab/nsp31431A1431VgCtgTt22AY.1060.00067
ORF1ab/nsp31431A1431VgCtgTt22AY.1100.000225
ORF1ab/nsp31431A1431VgCtgTt22AY.1180.000125
ORF1ab/nsp31431A1431TGctAct22AY.1200.000074
ORF1ab/nsp31431A1431VgCtgTt22AY.120.10.000642
ORF1ab/nsp31431A1431VgCtgTt22AY.1210.000271
ORF1ab/nsp31431A1431AgcTgcC22AY.1210.000271
ORF1ab/nsp31431A1431TGctAct22AY.250.000012
ORF1ab/nsp31431A1431SGctTct22AY.290.000032
ORF1ab/nsp31431A1431VgCtgTt22AY.330.000134
ORF1ab/nsp31431A1431VgCtgTt22AY.340.000194
ORF1ab/nsp31431A1431DgCtgAt22AY.40.000003
ORF1ab/nsp31431A1431del1Gct-ct22AY.40.000003
ORF1ab/nsp31431A1431VgCtgTt22AY.4.2.10.000298
ORF1ab/nsp31431A1431VgCtgTt22AY.420.00008
ORF1ab/nsp31431A1431SGctTct22AY.440.000012
ORF1ab/nsp31431A1431SGctTct22AY.460.000208
ORF1ab/nsp31431A1431AgcTgcC22AY.460.000208
ORF1ab/nsp31431A1431VgCtgTt22AY.46.40.000329
ORF1ab/nsp31431A1431delGCT---22AY.50.000041
ORF1ab/nsp31431A1431VgCtgTt22AY.590.001059
ORF1ab/nsp31431A1431delGCT---22AY.60.000082
ORF1ab/nsp31431A1431SGctTct22AY.75.10.000361
ORF1ab/nsp31431A1431VgCtgTt22AY.950.001522
ORF1ab/nsp31431A1431delGCT---22B0.000256
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.1590.009346
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.1860.006873
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.1920.004619
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.2220.000408
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.2910.001485
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.2980.001724
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.3020.004149
ORF1ab/nsp31431A1431TGctAct22B.1.1.3060.000877
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.370.000386
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.4160.00181
ORF1ab/nsp31431A1431SGctTct22B.1.1.5190.000079
ORF1ab/nsp31431A1431VgCtgTt22B.1.1.630.000772
ORF1ab/nsp31431A1431DgCtgAt22B.1.1.70.000002
ORF1ab/nsp31431A1431del1gcTgc-12B.1.1.70.000001
ORF1ab/nsp31431A1431del1Gct-ct12B.1.1.70.000001
ORF1ab/nsp31431A1431delGCT---22B.1.177.40.000422
ORF1ab/nsp31431A1431delGCT---22B.1.177.570.000562
ORF1ab/nsp31431A1431VgCtgTt22B.1.177.750.002081
ORF1ab/nsp31431A1431delGCT---22B.1.177.870.001456
ORF1ab/nsp31431A1431AgcTgcG22B.1.1890.008584
ORF1ab/nsp31431A1431VgCtgTt22B.1.2390.002442
ORF1ab/nsp31431A1431VgCtgTt22B.1.2410.001623
ORF1ab/nsp31431A1431VgCtgTt22B.1.2790.001027
ORF1ab/nsp31431A1431VgCtgTt22B.1.3110.000549
ORF1ab/nsp31431A1431delGCT---22B.1.36.170.000988
ORF1ab/nsp31431A1431VgCtgTt22B.1.36.70.008
ORF1ab/nsp31431A1431VgCtgTt22B.1.36.80.002
ORF1ab/nsp31431A1431VgCtgTt22B.1.4030.006536
ORF1ab/nsp31431A1431TGctAct22B.1.4270.000101
ORF1ab/nsp31431A1431TGctAct22B.1.4290.000047
ORF1ab/nsp31431A1431SGctTct22B.1.4290.000047
ORF1ab/nsp31431A1431AgcTgcG22B.1.466.20.000782
ORF1ab/nsp31431A1431delGCT---22B.1.5170.000854
ORF1ab/nsp31431A1431VgCtgTt22B.1.5250.000226
ORF1ab/nsp31431A1431VgCtgTt22B.1.575.10.004878
ORF1ab/nsp31431A1431del1gcTgc-22B.1.617.20.000008
ORF1ab/nsp31431A1431VgCtgTt22B.1.6230.001073
ORF1ab/nsp31431A1431VgCtgTt22B.1.6370.000146
ORF1ab/nsp31431A1431VgCtgTt22B.1.940.054054
ORF1ab/nsp31431A1431VgCtgTt22B.280.006557
ORF1ab/nsp31431A1431SGctTct22C.20.032258
ORF1ab/nsp31431A1431VgCtgTt22C.360.001821
ORF1ab/nsp31431A1431delGCT---22P.10.000032
ORF1ab/nsp31431A1431VgCtgTt22P.60.006289
ORF1ab/nsp31431A1431VgCtgTt22Q.30.00029
ORF1ab/nsp31431A1431VgCtgTt22Q.80.00033
ORF1ab/nsp31431A1431VgCtgTt22W.40.002703
ORF1ab/nsp31431A1431delGCT---11A0.000387
ORF1ab/nsp31431A1431SGctTct11A.20.000662
ORF1ab/nsp31431A1431VgCtgTt11A.20.000662
ORF1ab/nsp31431A1431AgcTgcG11A.2.40.003367
ORF1ab/nsp31431A1431delGCT---11A.2.40.003367
ORF1ab/nsp31431A1431TGctAct11A.2.40.003367
ORF1ab/nsp31431A1431VgCtgTt11A.2.50.000499
ORF1ab/nsp31431A1431VgCtgTt11A.210.00277
ORF1ab/nsp31431A1431delGCT---11A.280.002646
ORF1ab/nsp31431A1431KGCTAAG11All0
ORF1ab/nsp31431A1431EgCTgAG11All0
ORF1ab/nsp31431A1431XGCTTAA11All0
ORF1ab/nsp31431A1431del2gCTg--11All0
ORF1ab/nsp31431A1431VgCtgTt11AY.100.00053
ORF1ab/nsp31431A1431AgcTgcG11AY.1020.000027
ORF1ab/nsp31431A1431delGCT---11AY.1030.000006
ORF1ab/nsp31431A1431SGctTct11AY.1050.000643
ORF1ab/nsp31431A1431VgCtgTt11AY.1070.000466
ORF1ab/nsp31431A1431AgcTgcC11AY.1080.001103
ORF1ab/nsp31431A1431VgCtgTt11AY.1110.000183
ORF1ab/nsp31431A1431VgCtgTt11AY.116.10.000311
ORF1ab/nsp31431A1431GgCtgGt11AY.1180.000063
ORF1ab/nsp31431A1431AgcTgcC11AY.1190.000035
ORF1ab/nsp31431A1431del1gcTgc-11AY.120.000316
ORF1ab/nsp31431A1431delGCT---11AY.1200.000037
ORF1ab/nsp31431A1431TGctAct11AY.140.000088
ORF1ab/nsp31431A1431DgCtgAt11AY.150.002222
ORF1ab/nsp31431A1431AgcTgcG11AY.160.00038
ORF1ab/nsp31431A1431VgCtgTt11AY.160.00038
ORF1ab/nsp31431A1431delGCT---11AY.190.00114
ORF1ab/nsp31431A1431SGctTct11AY.200.000039
ORF1ab/nsp31431A1431AgcTgcC11AY.230.00007
ORF1ab/nsp31431A1431VgCtgTt11AY.23.10.000417
ORF1ab/nsp31431A1431delGCT---11AY.240.000431
ORF1ab/nsp31431A1431SGctTct11AY.240.000431
ORF1ab/nsp31431A1431delGCT---11AY.250.000006
ORF1ab/nsp31431A1431DgCtgAt11AY.250.000006
ORF1ab/nsp31431A1431GgCtgGt11AY.290.000016
ORF1ab/nsp31431A1431del1gcTgc-11AY.30.00001
ORF1ab/nsp31431A1431VgCtgTt11AY.3.10.000085
ORF1ab/nsp31431A1431AgcTgcC11AY.3.10.000085
ORF1ab/nsp31431A1431VgCtgTt11AY.300.000396
ORF1ab/nsp31431A1431AgcTgcC11AY.330.000067
ORF1ab/nsp31431A1431TGctAct11AY.330.000067
ORF1ab/nsp31431A1431delGCT---11AY.360.000148
ORF1ab/nsp31431A1431GgCtgGt11AY.370.000316
ORF1ab/nsp31431A1431PGctCct11AY.40.000002
ORF1ab/nsp31431A1431GgCtgGt11AY.40.000002
ORF1ab/nsp31431A1431SGctTct11AY.4.20.000022
ORF1ab/nsp31431A1431TGctAct11AY.4.2.10.000149
ORF1ab/nsp31431A1431VgCtgTt11AY.4.40.000409
ORF1ab/nsp31431A1431VgCtgTt11AY.400.000964
ORF1ab/nsp31431A1431TGctAct11AY.420.00004
ORF1ab/nsp31431A1431delGCT---11AY.420.00004
ORF1ab/nsp31431A1431AgcTgcC11AY.420.00004
ORF1ab/nsp31431A1431del2gCTg--11AY.430.000004
ORF1ab/nsp31431A1431del1Gct-ct11AY.440.000006
ORF1ab/nsp31431A1431DgCtgAt11AY.440.000006
ORF1ab/nsp31431A1431VgCtgTt11AY.46.50.000198
ORF1ab/nsp31431A1431TGctAct11AY.470.000031
ORF1ab/nsp31431A1431SGctTct11AY.50.000021
ORF1ab/nsp31431A1431AgcTgcA11AY.50.000021
ORF1ab/nsp31431A1431DgCtgAt11AY.50.000021
ORF1ab/nsp31431A1431VgCtgTt11AY.5.40.000277
ORF1ab/nsp31431A1431VgCtgTt11AY.540.000095
ORF1ab/nsp31431A1431SGctTct11AY.590.00053
ORF1ab/nsp31431A1431delGCT---11AY.600.000938
ORF1ab/nsp31431A1431delGCT---11AY.610.000105
ORF1ab/nsp31431A1431del1gcTgc-11AY.610.000105
ORF1ab/nsp31431A1431VgCtgTt11AY.650.000533
ORF1ab/nsp31431A1431VgCtgTt11AY.670.000464
ORF1ab/nsp31431A1431AgcTgcC11AY.670.000464
ORF1ab/nsp31431A1431VgCtgTt11AY.690.000187
ORF1ab/nsp31431A1431DgCtgAt11AY.690.000187
ORF1ab/nsp31431A1431delGCT---11AY.70.000196
ORF1ab/nsp31431A1431TGctAct11AY.70.000196
ORF1ab/nsp31431A1431VgCtgTt11AY.7.20.000559
ORF1ab/nsp31431A1431AgcTgcA11AY.700.000209
ORF1ab/nsp31431A1431delGCT---11AY.720.001361
ORF1ab/nsp31431A1431VgCtgTt11AY.730.000665
ORF1ab/nsp31431A1431AgcTgcG11AY.80.000606
ORF1ab/nsp31431A1431VgCtgTt11AY.80.000606
ORF1ab/nsp31431A1431TGctAct11AY.850.000427
ORF1ab/nsp31431A1431AgcTgcC11AY.850.000427
ORF1ab/nsp31431A1431VgCtgTt11AY.860.00083
ORF1ab/nsp31431A1431VgCtgTt11AY.880.000884
ORF1ab/nsp31431A1431delGCT---11AY.90.000068
ORF1ab/nsp31431A1431VgCtgTt11AY.9.10.000084
ORF1ab/nsp31431A1431AgcTgcC11AY.9.10.000084
ORF1ab/nsp31431A1431DgCtgAt11AY.9.20.000037
ORF1ab/nsp31431A1431delGCT---11AY.9.20.000037
ORF1ab/nsp31431A1431VgCtgTt11AY.940.000443
ORF1ab/nsp31431A1431AgcTgcG11AY.980.000079
ORF1ab/nsp31431A1431VgCtgTt11AY.980.000079
ORF1ab/nsp31431A1431TGctAct11AY.98.10.000048
ORF1ab/nsp31431A1431VgCtgTt11AY.990.001049
ORF1ab/nsp31431A1431delGCT---11AY.99.10.001553
ORF1ab/nsp31431A1431VgCtgTt11AY.99.20.000092
ORF1ab/nsp31431A1431GgCtgGt11B0.000128
ORF1ab/nsp31431A1431DgCtgAt11B.10.000009
ORF1ab/nsp31431A1431GgCtgGt11B.10.000009
ORF1ab/nsp31431A1431SGctTct11B.10.000009
ORF1ab/nsp31431A1431del1gcTgc-11B.10.000009
ORF1ab/nsp31431A1431DgCtgAt11B.1.10.000018
ORF1ab/nsp31431A1431GgCtgGt11B.1.10.000018
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.1530.001095
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.1980.001468
ORF1ab/nsp31431A1431AgcTgcC11B.1.1.2070.001182
ORF1ab/nsp31431A1431TGctAct11B.1.1.2220.000204
ORF1ab/nsp31431A1431SGctTct11B.1.1.2310.003096
ORF1ab/nsp31431A1431GgCtgGt11B.1.1.2310.003096
ORF1ab/nsp31431A1431delGCT---11B.1.1.2360.006897
ORF1ab/nsp31431A1431AgcTgcA11B.1.1.250.000569
ORF1ab/nsp31431A1431AgcTgcC11B.1.1.2690.001353
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.280.000311
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.2860.002899
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.2970.002237
ORF1ab/nsp31431A1431delGCT---11B.1.1.3150.008475
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.3180.000302
ORF1ab/nsp31431A1431TGctAct11B.1.1.330.000421
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.3330.001076
ORF1ab/nsp31431A1431PGctCct11B.1.1.3560.008547
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.3620.005618
ORF1ab/nsp31431A1431AgcTgcG11B.1.1.3690.000446
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.3720.000689
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.390.00051
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.4040.015873
ORF1ab/nsp31431A1431delGCT---11B.1.1.4090.002833
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.4090.002833
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.4320.001266
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp31431A1431delGCT---11B.1.1.440.00241
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.4420.018519
ORF1ab/nsp31431A1431AgcTgcC11B.1.1.4420.018519
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.4480.002033
ORF1ab/nsp31431A1431delGCT---11B.1.1.510.001718
ORF1ab/nsp31431A1431TGctAct11B.1.1.5140.038462
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.5170.006803
ORF1ab/nsp31431A1431AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.5230.001563
ORF1ab/nsp31431A1431VgCtgTt11B.1.1.540.003021
ORF1ab/nsp31431A1431PGctCct11B.1.1.70.000001
ORF1ab/nsp31431A1431delGCT---11B.1.1.700.000341
ORF1ab/nsp31431A1431VgCtgTt11B.1.1260.001276
ORF1ab/nsp31431A1431VgCtgTt11B.1.1280.000635
ORF1ab/nsp31431A1431AgcTgcC11B.1.1530.018868
ORF1ab/nsp31431A1431VgCtgTt11B.1.1570.002985
ORF1ab/nsp31431A1431TGctAct11B.1.1600.000031
ORF1ab/nsp31431A1431AgcTgcG11B.1.1600.000031
ORF1ab/nsp31431A1431delGCT---11B.1.160.230.004831
ORF1ab/nsp31431A1431delGCT---11B.1.160.70.002079
ORF1ab/nsp31431A1431SGctTct11B.1.1770.000013
ORF1ab/nsp31431A1431DgCtgAt11B.1.1770.000013
ORF1ab/nsp31431A1431delGCT---11B.1.177.150.000631
ORF1ab/nsp31431A1431delGCT---11B.1.177.160.000664
ORF1ab/nsp31431A1431delGCT---11B.1.177.190.001431
ORF1ab/nsp31431A1431VgCtgTt11B.1.177.190.001431
ORF1ab/nsp31431A1431delGCT---11B.1.177.210.000076
ORF1ab/nsp31431A1431AgcTgcA11B.1.177.350.000691
ORF1ab/nsp31431A1431VgCtgTt11B.1.177.530.002392
ORF1ab/nsp31431A1431AgcTgcG11B.1.177.540.000606
ORF1ab/nsp31431A1431delGCT---11B.1.177.60.000977
ORF1ab/nsp31431A1431SGctTct11B.1.177.60.000977
ORF1ab/nsp31431A1431delGCT---11B.1.177.620.001192
ORF1ab/nsp31431A1431delGCT---11B.1.177.680.015152
ORF1ab/nsp31431A1431delGCT---11B.1.177.70.000165
ORF1ab/nsp31431A1431VgCtgTt11B.1.177.70.000165
ORF1ab/nsp31431A1431TGctAct11B.1.177.730.000566
ORF1ab/nsp31431A1431delGCT---11B.1.177.760.002494
ORF1ab/nsp31431A1431GgCtgGt11B.1.177.810.000189
ORF1ab/nsp31431A1431delGCT---11B.1.177.90.001332
ORF1ab/nsp31431A1431EgCTgAG11B.1.20.000009
ORF1ab/nsp31431A1431VgCtgTt11B.1.2060.000816
ORF1ab/nsp31431A1431VgCtgTt11B.1.214.20.0006
ORF1ab/nsp31431A1431SGctTct11B.1.2210.000071
ORF1ab/nsp31431A1431TGctAct11B.1.2210.000071
ORF1ab/nsp31431A1431VgCtgTt11B.1.2250.015385
ORF1ab/nsp31431A1431SGctTct11B.1.230.006061
ORF1ab/nsp31431A1431PGctCct11B.1.2360.002053
ORF1ab/nsp31431A1431AgcTgcC11B.1.2430.00007
ORF1ab/nsp31431A1431TGctAct11B.1.2430.00007
ORF1ab/nsp31431A1431VgCtgTt11B.1.2480.029412
ORF1ab/nsp31431A1431delGCT---11B.1.2580.000067
ORF1ab/nsp31431A1431delGCT---11B.1.258.100.011364
ORF1ab/nsp31431A1431SGctTct11B.1.2730.012987
ORF1ab/nsp31431A1431VgCtgTt11B.1.350.008475
ORF1ab/nsp31431A1431AgcTgcC11B.1.3510.00003
ORF1ab/nsp31431A1431SGctTct11B.1.3510.00003
ORF1ab/nsp31431A1431TGctAct11B.1.3510.00003
ORF1ab/nsp31431A1431VgCtgTt11B.1.36.10.00114
ORF1ab/nsp31431A1431VgCtgTt11B.1.36.100.004785
ORF1ab/nsp31431A1431VgCtgTt11B.1.36.160.001425
ORF1ab/nsp31431A1431VgCtgTt11B.1.36.170.000494
ORF1ab/nsp31431A1431delGCT---11B.1.36.220.001208
ORF1ab/nsp31431A1431delGCT---11B.1.36.380.001642
ORF1ab/nsp31431A1431VgCtgTt11B.1.3610.001289
ORF1ab/nsp31431A1431VgCtgTt11B.1.3690.000285
ORF1ab/nsp31431A1431GgCtgGt11B.1.3710.001122
ORF1ab/nsp31431A1431VgCtgTt11B.1.3910.001127
ORF1ab/nsp31431A1431VgCtgTt11B.1.3970.004854
ORF1ab/nsp31431A1431VgCtgTt11B.1.4000.000429
ORF1ab/nsp31431A1431AgcTgcC11B.1.4040.001302
ORF1ab/nsp31431A1431VgCtgTt11B.1.4090.000781
ORF1ab/nsp31431A1431TGctAct11B.1.4150.014286
ORF1ab/nsp31431A1431delGCT---11B.1.416.10.001563
ORF1ab/nsp31431A1431VgCtgTt11B.1.4220.000812
ORF1ab/nsp31431A1431GgCtgGt11B.1.4270.00005
ORF1ab/nsp31431A1431AgcTgcA11B.1.4270.00005
ORF1ab/nsp31431A1431AgcTgcC11B.1.4290.000024
ORF1ab/nsp31431A1431PGctCct11B.1.4290.000024
ORF1ab/nsp31431A1431VgCtgTt11B.1.438.10.000107
ORF1ab/nsp31431A1431VgCtgTt11B.1.4740.001901
ORF1ab/nsp31431A1431TGctAct11B.1.4970.000315
ORF1ab/nsp31431A1431VgCtgTt11B.1.5090.000866
ORF1ab/nsp31431A1431VgCtgTt11B.1.5170.000427
ORF1ab/nsp31431A1431SGctTct11B.1.5210.004975
ORF1ab/nsp31431A1431delGCT---11B.1.5250.000113
ORF1ab/nsp31431A1431AgcTgcC11B.1.5260.000024
ORF1ab/nsp31431A1431del1gcTgc-11B.1.5260.000024
ORF1ab/nsp31431A1431VgCtgTt11B.1.5560.007519
ORF1ab/nsp31431A1431VgCtgTt11B.1.5640.000426
ORF1ab/nsp31431A1431delGCT---11B.1.5750.000303
ORF1ab/nsp31431A1431TGctAct11B.1.5950.000261
ORF1ab/nsp31431A1431TGctAct11B.1.5960.000087
ORF1ab/nsp31431A1431delGCT---11B.1.5960.000087
ORF1ab/nsp31431A1431AgcTgcC11B.1.5960.000087
ORF1ab/nsp31431A1431VgCtgTt11B.1.6090.000479
ORF1ab/nsp31431A1431XGCTTAA11B.1.617.10.000129
ORF1ab/nsp31431A1431del1Gct-ct11B.1.617.10.000129
ORF1ab/nsp31431A1431delGCT---11B.1.6210.000089
ORF1ab/nsp31431A1431VgCtgTt11B.1.621.10.000506
ORF1ab/nsp31431A1431delGCT---11B.1.621.10.000506
ORF1ab/nsp31431A1431delGCT---11B.1.6300.005236
ORF1ab/nsp31431A1431DgCtgAt11B.1.6370.000073
ORF1ab/nsp31431A1431del1gcTgc-11B.1.6370.000073
ORF1ab/nsp31431A1431delGCT---11B.340.013699
ORF1ab/nsp31431A1431VgCtgTt11B.390.002331
ORF1ab/nsp31431A1431VgCtgTt11B.40.002208
ORF1ab/nsp31431A1431VgCtgTt11B.550.00295
ORF1ab/nsp31431A1431PGctCct11B.580.010204
ORF1ab/nsp31431A1431GgCtgGt11B.60.00091
ORF1ab/nsp31431A1431GgCtgGt11B.6.60.000889
ORF1ab/nsp31431A1431VgCtgTt11B.610.005747
ORF1ab/nsp31431A1431VgCtgTt11C.20.016129
ORF1ab/nsp31431A1431KGCTAAG11C.350.000774
ORF1ab/nsp31431A1431TGctAct11D.20.000075
ORF1ab/nsp31431A1431VgCtgTt11D.50.004975
ORF1ab/nsp31431A1431VgCtgTt11L.30.003546
ORF1ab/nsp31431A1431TGctAct11N.30.005814
ORF1ab/nsp31431A1431VgCtgTt11P.1.10.000318
ORF1ab/nsp31431A1431AgcTgcG11P.1.10.000318
ORF1ab/nsp31431A1431delGCT---11P.1.150.000232
ORF1ab/nsp31431A1431SGctTct11P.20.000187
ORF1ab/nsp31431A1431VgCtgTt11P.50.013699
ORF1ab/nsp31431A1431AgcTgcC11U.30.003861