CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1429 | T1429I | T2247I | nonsyn | aCc | aTc | 938 | 938 | 1 | 7004-7006 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 938 | 938 | All | 0.000179 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 356 | 356 | B.1.1.7 | 0.000319 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 69 | 69 | B.1.258.14 | 0.067647 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 48 | 48 | P.1 | 0.000756 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 39 | 39 | B.1.617.2 | 0.000147 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 36 | 36 | B.1.637 | 0.002631 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 33 | 33 | AY.23 | 0.002302 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 26 | 26 | AY.37 | 0.008217 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 15 | 15 | B.1.1.207 | 0.01773 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 13 | 13 | B.1.596 | 0.001133 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 8 | 8 | A.23.1 | 0.005634 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | B.1.36.1 | 0.003421 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | P.1.16 | 0.000374 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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