CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1429 | T1429T | T2247T | syn | acC | acT | 2597 | 2501 | 0.963034 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429T | T2247T | syn | acC | acA | 2597 | 87 | 0.0335002 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429T | T2247T | syn | acC | acG | 2597 | 9 | 0.00346554 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429I | T2247I | nonsyn | aCc | aTc | 938 | 938 | 1 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429N | T2247N | nonsyn | aCc | aAc | 419 | 419 | 1 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429del | T2247del | del | ACC | --- | 229 | 229 | 1 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429P | T2247P | nonsyn | Acc | Ccc | 97 | 97 | 1 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429A | T2247A | nonsyn | Acc | Gcc | 73 | 72 | 0.986301 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429A | T2247A | nonsyn | AcC | GcA | 73 | 1 | 0.0136986 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429M | T2247M | nonsyn | aCC | aTG | 58 | 58 | 1 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429S | T2247S | nonsyn | Acc | Tcc | 8 | 7 | 0.875 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429S | T2247S | nonsyn | aCc | aGc | 8 | 1 | 0.125 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429del1 | T2247del1 | del | acC | ac- | 6 | 3 | 0.5 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429del1 | T2247del1 | del | aCc | a-c | 6 | 1 | 0.166667 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429del1 | T2247del1 | del | AcC | -cA | 6 | 1 | 0.166667 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429del1 | T2247del1 | del | Acc | -cc | 6 | 1 | 0.166667 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429del2 | T2247del2 | del | aCC | a-- | 2 | 2 | 1 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429R | T2247R | nonsyn | ACC | CGT | 2 | 2 | 1 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429K | T2247K | nonsyn | aCC | aAA | 1 | 1 | 1 | 7004-7006 |
ORF1ab/nsp3 | 1429 | T1429L | T2247L | nonsyn | ACC | CTT | 1 | 1 | 1 | 7004-7006 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2501 | 2597 | All | 0.000478 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 87 | 2597 | All | 0.000017 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acG | 9 | 2597 | All | 0.000002 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 938 | 938 | All | 0.000179 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 426 | 426 | B.1.36.38 | 0.699507 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 419 | 419 | All | 0.00008 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 356 | 356 | B.1.1.7 | 0.000319 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 257 | 274 | B.1.1.7 | 0.00023 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 17 | 274 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 229 | 229 | All | 0.000044 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 229 | 229 | AY.14 | 0.020155 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 166 | 166 | AT.1 | 0.851282 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 130 | 130 | B.1.429 | 0.003059 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 125 | 129 | AY.4 | 0.000195 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 4 | 129 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 120 | 120 | B.1.349 | 0.085776 |
ORF1ab/nsp3 | 1429 | T1429P | Acc | Ccc | 97 | 97 | All | 0.000019 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 87 | 93 | AY.44 | 0.00053 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 5 | 93 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acG | 1 | 93 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 86 | 86 | B.1.1.7 | 0.000077 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 82 | 85 | B.1 | 0.000751 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acG | 3 | 85 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1429 | T1429P | Acc | Ccc | 83 | 83 | B.1.617.2 | 0.000313 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 80 | 80 | AB.1 | 0.655738 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 71 | 77 | B.1.617.2 | 0.000267 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 4 | 77 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acG | 2 | 77 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 72 | 73 | All | 0.000014 |
ORF1ab/nsp3 | 1429 | T1429A | AcC | GcA | 1 | 73 | All | 0 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 69 | 69 | B.1.258.14 | 0.067647 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 60 | 68 | B.1.2 | 0.000528 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 6 | 68 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acG | 2 | 68 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1429 | T1429M | aCC | aTG | 58 | 58 | All | 0.000011 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 57 | 57 | AY.4 | 0.000089 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 51 | 51 | P.1 | 0.000803 |
ORF1ab/nsp3 | 1429 | T1429M | aCC | aTG | 50 | 50 | B.1 | 0.000458 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 48 | 48 | B.1.617.2 | 0.000181 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 48 | 48 | P.1 | 0.000756 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 47 | 47 | AY.103 | 0.000292 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 40 | 45 | AY.43 | 0.000177 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 5 | 45 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 41 | 41 | B.1.1.394 | 1 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 39 | 39 | B.1.617.2 | 0.000147 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 36 | 36 | B.1.637 | 0.002631 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 33 | 33 | AY.23 | 0.002302 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 29 | 29 | AY.39 | 0.000717 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 28 | 28 | B.1.177.18 | 0.032483 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 27 | 27 | AY.69 | 0.00504 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 26 | 26 | AY.37 | 0.008217 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 20 | 21 | B.1.525 | 0.002263 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 21 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 10 | 18 | AY.3 | 0.000099 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 8 | 18 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 17 | 17 | B.1.36.33 | 0.128788 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 16 | 16 | AY.5 | 0.00033 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 16 | 16 | AY.64 | 0.009524 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 11 | 16 | B.1.221 | 0.000781 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 5 | 16 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 14 | 15 | B.1.1 | 0.000254 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 15 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 15 | 15 | B.1.1.207 | 0.01773 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 14 | 14 | AY.6 | 0.000576 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 14 | 14 | B.1.36 | 0.002043 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 13 | 13 | AY.4.2 | 0.000282 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 13 | 13 | B.1.258.17 | 0.001352 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 13 | 13 | B.1.596 | 0.001133 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 9 | 10 | B.1.617.1 | 0.001161 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 10 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 10 | 10 | B.1.628 | 0.003524 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 8 | 9 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 9 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 9 | 9 | B.1.1.306 | 0.003946 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 8 | 8 | 0.444444 | |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 8 | 8 | A.23.1 | 0.005634 |
ORF1ab/nsp3 | 1429 | T1429S | Acc | Tcc | 7 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1429 | T1429S | aCc | aGc | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 7 | 8 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 8 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1429 | T1429P | Acc | Ccc | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 8 | 8 | B.1.625 | 0.018824 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 7 | 7 | AY.116 | 0.002007 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 7 | 7 | B.1.621.1 | 0.003541 |
ORF1ab/nsp3 | 1429 | T1429del1 | acC | ac- | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1429 | T1429del1 | aCc | a-c | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1429 | T1429del1 | AcC | -cA | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1429 | T1429del1 | Acc | -cc | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 6 | 6 | AY.19 | 0.006842 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 5 | 6 | AY.59 | 0.002648 |
ORF1ab/nsp3 | 1429 | T1429A | AcC | GcA | 1 | 6 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 6 | 6 | AY.85 | 0.002563 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 6 | 6 | B.1.177.42 | 0.005367 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 6 | 6 | B.1.367 | 0.004754 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 5 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 5 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 5 | 5 | B.1.1.309 | 0.02924 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 5 | 5 | B.1.160.14 | 0.010593 |
ORF1ab/nsp3 | 1429 | T1429M | aCC | aTG | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 5 | 5 | P.1.2 | 0.00578 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 3 | 4 | AD.2 | 0.000657 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 4 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 4 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 4 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 4 | AY.49 | 0.01278 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 4 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 4 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 4 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 4 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 3 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 3 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | AZ.1 | 0.002602 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | B.1.1.157 | 0.00274 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | B.1.1.231 | 0.009288 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | B.1.1.253 | 0.007519 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | B.1.1.301 | 0.003538 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | B.1.1.500 | 0.06 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | B.1.1.89 | 0.018182 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | B.1.36.1 | 0.003421 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 2 | 3 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 3 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 3 | 3 | U.3 | 0.011583 |
ORF1ab/nsp3 | 1429 | T1429S | Acc | Tcc | 2 | 2 | A.2.4 | 0.006734 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1429 | T1429del2 | aCC | a-- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1429 | T1429R | ACC | CGT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1429 | T1429S | Acc | Tcc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp3 | 1429 | T1429R | ACC | CGT | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1429 | T1429del1 | Acc | -cc | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1429 | T1429del1 | acC | ac- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.1.71 | 0.012121 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.177.34 | 0.105263 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.177.68 | 0.030303 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1429 | T1429P | Acc | Ccc | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AK.1 | 0.012658 |
ORF1ab/nsp3 | 1429 | T1429K | aCC | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1429 | T1429L | ACC | CTT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1429 | T1429P | Acc | Ccc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1429 | T1429L | ACC | CTT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1429 | T1429P | Acc | Ccc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1429 | T1429del1 | acC | ac- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1429 | T1429S | aCc | aGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1429 | T1429P | Acc | Ccc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1429 | T1429P | Acc | Ccc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1429 | T1429S | Acc | Tcc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.184 | 0.058824 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acG | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1429 | T1429del2 | aCC | a-- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.482 | 0.023256 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1429 | T1429S | Acc | Tcc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1429 | T1429del2 | aCC | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1429 | T1429P | Acc | Ccc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.1.95 | 0.019608 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 1429 | T1429del1 | acC | ac- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1429 | T1429M | aCC | aTG | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1429 | T1429M | aCC | aTG | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.598 | 0.016949 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1429 | T1429del1 | AcC | -cA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1429 | T1429M | aCC | aTG | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 1429 | T1429K | aCC | aAA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | C.36.2 | 0.034483 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acA | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1429 | T1429S | Acc | Tcc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1429 | T1429del | ACC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1429 | T1429I | aCc | aTc | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1429 | T1429del1 | aCc | a-c | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1429 | T1429N | aCc | aAc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1429 | T1429T | acC | acT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1429 | T1429A | Acc | Gcc | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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