CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1429

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1429	T1429T	T2247T	syn	acC	acT	2597	2501	0.963034	7004-7006
ORF1ab/nsp3	1429	T1429T	T2247T	syn	acC	acA	2597	87	0.0335002	7004-7006
ORF1ab/nsp3	1429	T1429T	T2247T	syn	acC	acG	2597	9	0.00346554	7004-7006
ORF1ab/nsp3	1429	T1429I	T2247I	nonsyn	aCc	aTc	938	938	1	7004-7006
ORF1ab/nsp3	1429	T1429N	T2247N	nonsyn	aCc	aAc	419	419	1	7004-7006
ORF1ab/nsp3	1429	T1429del	T2247del	del	ACC	---	229	229	1	7004-7006
ORF1ab/nsp3	1429	T1429P	T2247P	nonsyn	Acc	Ccc	97	97	1	7004-7006
ORF1ab/nsp3	1429	T1429A	T2247A	nonsyn	Acc	Gcc	73	72	0.986301	7004-7006
ORF1ab/nsp3	1429	T1429A	T2247A	nonsyn	AcC	GcA	73	1	0.0136986	7004-7006
ORF1ab/nsp3	1429	T1429M	T2247M	nonsyn	aCC	aTG	58	58	1	7004-7006
ORF1ab/nsp3	1429	T1429S	T2247S	nonsyn	Acc	Tcc	8	7	0.875	7004-7006
ORF1ab/nsp3	1429	T1429S	T2247S	nonsyn	aCc	aGc	8	1	0.125	7004-7006
ORF1ab/nsp3	1429	T1429del1	T2247del1	del	acC	ac-	6	3	0.5	7004-7006
ORF1ab/nsp3	1429	T1429del1	T2247del1	del	aCc	a-c	6	1	0.166667	7004-7006
ORF1ab/nsp3	1429	T1429del1	T2247del1	del	AcC	-cA	6	1	0.166667	7004-7006
ORF1ab/nsp3	1429	T1429del1	T2247del1	del	Acc	-cc	6	1	0.166667	7004-7006
ORF1ab/nsp3	1429	T1429del2	T2247del2	del	aCC	a--	2	2	1	7004-7006
ORF1ab/nsp3	1429	T1429R	T2247R	nonsyn	ACC	CGT	2	2	1	7004-7006
ORF1ab/nsp3	1429	T1429K	T2247K	nonsyn	aCC	aAA	1	1	1	7004-7006
ORF1ab/nsp3	1429	T1429L	T2247L	nonsyn	ACC	CTT	1	1	1	7004-7006

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1429	T1429T	acC	acT	2501	2597	All	0.000478
ORF1ab/nsp3	1429	T1429T	acC	acA	87	2597	All	0.000017
ORF1ab/nsp3	1429	T1429T	acC	acG	9	2597	All	0.000002
ORF1ab/nsp3	1429	T1429I	aCc	aTc	938	938	All	0.000179
ORF1ab/nsp3	1429	T1429T	acC	acT	426	426	B.1.36.38	0.699507
ORF1ab/nsp3	1429	T1429N	aCc	aAc	419	419	All	0.00008
ORF1ab/nsp3	1429	T1429I	aCc	aTc	356	356	B.1.1.7	0.000319
ORF1ab/nsp3	1429	T1429T	acC	acT	257	274	B.1.1.7	0.00023
ORF1ab/nsp3	1429	T1429T	acC	acA	17	274	B.1.1.7	0.000015
ORF1ab/nsp3	1429	T1429del	ACC	---	229	229	All	0.000044
ORF1ab/nsp3	1429	T1429T	acC	acT	229	229	AY.14	0.020155
ORF1ab/nsp3	1429	T1429N	aCc	aAc	166	166	AT.1	0.851282
ORF1ab/nsp3	1429	T1429T	acC	acT	130	130	B.1.429	0.003059
ORF1ab/nsp3	1429	T1429T	acC	acT	125	129	AY.4	0.000195
ORF1ab/nsp3	1429	T1429T	acC	acA	4	129	AY.4	0.000006
ORF1ab/nsp3	1429	T1429T	acC	acT	120	120	B.1.349	0.085776
ORF1ab/nsp3	1429	T1429P	Acc	Ccc	97	97	All	0.000019
ORF1ab/nsp3	1429	T1429T	acC	acT	87	93	AY.44	0.00053
ORF1ab/nsp3	1429	T1429T	acC	acA	5	93	AY.44	0.00003
ORF1ab/nsp3	1429	T1429T	acC	acG	1	93	AY.44	0.000006
ORF1ab/nsp3	1429	T1429del	ACC	---	86	86	B.1.1.7	0.000077
ORF1ab/nsp3	1429	T1429T	acC	acT	82	85	B.1	0.000751
ORF1ab/nsp3	1429	T1429T	acC	acG	3	85	B.1	0.000027
ORF1ab/nsp3	1429	T1429P	Acc	Ccc	83	83	B.1.617.2	0.000313
ORF1ab/nsp3	1429	T1429T	acC	acT	80	80	AB.1	0.655738
ORF1ab/nsp3	1429	T1429T	acC	acT	71	77	B.1.617.2	0.000267
ORF1ab/nsp3	1429	T1429T	acC	acA	4	77	B.1.617.2	0.000015
ORF1ab/nsp3	1429	T1429T	acC	acG	2	77	B.1.617.2	0.000008
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	72	73	All	0.000014
ORF1ab/nsp3	1429	T1429A	AcC	GcA	1	73	All	0
ORF1ab/nsp3	1429	T1429I	aCc	aTc	69	69	B.1.258.14	0.067647
ORF1ab/nsp3	1429	T1429T	acC	acT	60	68	B.1.2	0.000528
ORF1ab/nsp3	1429	T1429T	acC	acA	6	68	B.1.2	0.000053
ORF1ab/nsp3	1429	T1429T	acC	acG	2	68	B.1.2	0.000018
ORF1ab/nsp3	1429	T1429M	aCC	aTG	58	58	All	0.000011
ORF1ab/nsp3	1429	T1429N	aCc	aAc	57	57	AY.4	0.000089
ORF1ab/nsp3	1429	T1429T	acC	acT	51	51	P.1	0.000803
ORF1ab/nsp3	1429	T1429M	aCC	aTG	50	50	B.1	0.000458
ORF1ab/nsp3	1429	T1429N	aCc	aAc	48	48	B.1.617.2	0.000181
ORF1ab/nsp3	1429	T1429I	aCc	aTc	48	48	P.1	0.000756
ORF1ab/nsp3	1429	T1429T	acC	acT	47	47	AY.103	0.000292
ORF1ab/nsp3	1429	T1429T	acC	acT	40	45	AY.43	0.000177
ORF1ab/nsp3	1429	T1429T	acC	acA	5	45	AY.43	0.000022
ORF1ab/nsp3	1429	T1429T	acC	acT	41	41	B.1.1.394	1
ORF1ab/nsp3	1429	T1429I	aCc	aTc	39	39	B.1.617.2	0.000147
ORF1ab/nsp3	1429	T1429I	aCc	aTc	36	36	B.1.637	0.002631
ORF1ab/nsp3	1429	T1429I	aCc	aTc	33	33	AY.23	0.002302
ORF1ab/nsp3	1429	T1429N	aCc	aAc	29	29	AY.39	0.000717
ORF1ab/nsp3	1429	T1429I	aCc	aTc	29	29	AY.4	0.000045
ORF1ab/nsp3	1429	T1429T	acC	acT	28	28	B.1.177.18	0.032483
ORF1ab/nsp3	1429	T1429N	aCc	aAc	27	27	AY.69	0.00504
ORF1ab/nsp3	1429	T1429I	aCc	aTc	26	26	AY.37	0.008217
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	23	23	B.1.1.7	0.000021
ORF1ab/nsp3	1429	T1429T	acC	acT	20	21	B.1.525	0.002263
ORF1ab/nsp3	1429	T1429T	acC	acA	1	21	B.1.525	0.000113
ORF1ab/nsp3	1429	T1429I	aCc	aTc	20	20	B.1.427	0.00101
ORF1ab/nsp3	1429	T1429T	acC	acT	19	19	AY.25	0.000114
ORF1ab/nsp3	1429	T1429T	acC	acA	10	18	AY.3	0.000099
ORF1ab/nsp3	1429	T1429T	acC	acT	8	18	AY.3	0.00008
ORF1ab/nsp3	1429	T1429del	ACC	---	17	17	B.1.177	0.000224
ORF1ab/nsp3	1429	T1429T	acC	acT	17	17	B.1.36.33	0.128788
ORF1ab/nsp3	1429	T1429T	acC	acT	16	16	AY.5	0.00033
ORF1ab/nsp3	1429	T1429T	acC	acT	16	16	AY.64	0.009524
ORF1ab/nsp3	1429	T1429I	aCc	aTc	16	16	B.1.2	0.000141
ORF1ab/nsp3	1429	T1429T	acC	acT	11	16	B.1.221	0.000781
ORF1ab/nsp3	1429	T1429T	acC	acA	5	16	B.1.221	0.000355
ORF1ab/nsp3	1429	T1429I	aCc	aTc	15	15	AY.3	0.000149
ORF1ab/nsp3	1429	T1429T	acC	acT	14	15	B.1.1	0.000254
ORF1ab/nsp3	1429	T1429T	acC	acA	1	15	B.1.1	0.000018
ORF1ab/nsp3	1429	T1429I	aCc	aTc	15	15	B.1.1.207	0.01773
ORF1ab/nsp3	1429	T1429del	ACC	---	14	14	AY.4	0.000022
ORF1ab/nsp3	1429	T1429T	acC	acT	14	14	AY.6	0.000576
ORF1ab/nsp3	1429	T1429T	acC	acT	14	14	B.1.160	0.000437
ORF1ab/nsp3	1429	T1429T	acC	acT	14	14	B.1.36	0.002043
ORF1ab/nsp3	1429	T1429T	acC	acT	13	13	AY.4.2	0.000282
ORF1ab/nsp3	1429	T1429T	acC	acT	13	13	B.1.258	0.000865
ORF1ab/nsp3	1429	T1429T	acC	acT	13	13	B.1.258.17	0.001352
ORF1ab/nsp3	1429	T1429I	aCc	aTc	13	13	B.1.596	0.001133
ORF1ab/nsp3	1429	T1429T	acC	acT	12	12	AY.29	0.000189
ORF1ab/nsp3	1429	T1429T	acC	acT	12	12	B.1.177	0.000158
ORF1ab/nsp3	1429	T1429T	acC	acT	12	12	B.1.351	0.000357
ORF1ab/nsp3	1429	T1429T	acC	acT	11	11	AY.26	0.000311
ORF1ab/nsp3	1429	T1429del	ACC	---	11	11	B.1	0.000101
ORF1ab/nsp3	1429	T1429T	acC	acT	10	10	B.1.234	0.001319
ORF1ab/nsp3	1429	T1429T	acC	acT	9	10	B.1.617.1	0.001161
ORF1ab/nsp3	1429	T1429T	acC	acA	1	10	B.1.617.1	0.000129
ORF1ab/nsp3	1429	T1429T	acC	acT	10	10	B.1.628	0.003524
ORF1ab/nsp3	1429	T1429T	acC	acT	9	9	AY.100	0.000414
ORF1ab/nsp3	1429	T1429I	aCc	aTc	9	9	AY.103	0.000056
ORF1ab/nsp3	1429	T1429I	aCc	aTc	9	9	AY.119	0.000318
ORF1ab/nsp3	1429	T1429T	acC	acT	8	9	AY.119	0.000282
ORF1ab/nsp3	1429	T1429T	acC	acA	1	9	AY.119	0.000035
ORF1ab/nsp3	1429	T1429T	acC	acT	9	9	B.1.1.306	0.003946
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	9	9	B.1.1.519	0.000357
ORF1ab/nsp3	1429	T1429I	aCc	aTc	9	9	B.1.621	0.000797
ORF1ab/nsp3	1429	T1429del	ACC	---	8	8		0.444444
ORF1ab/nsp3	1429	T1429I	aCc	aTc	8	8	A.23.1	0.005634
ORF1ab/nsp3	1429	T1429S	Acc	Tcc	7	8	All	0.000001
ORF1ab/nsp3	1429	T1429S	aCc	aGc	1	8	All	0
ORF1ab/nsp3	1429	T1429N	aCc	aAc	8	8	AY.102	0.000212
ORF1ab/nsp3	1429	T1429T	acC	acT	8	8	AY.118	0.000501
ORF1ab/nsp3	1429	T1429I	aCc	aTc	8	8	AY.27	0.000518
ORF1ab/nsp3	1429	T1429T	acC	acT	7	8	AY.39	0.000173
ORF1ab/nsp3	1429	T1429T	acC	acA	1	8	AY.39	0.000025
ORF1ab/nsp3	1429	T1429P	Acc	Ccc	8	8	AY.43	0.000035
ORF1ab/nsp3	1429	T1429T	acC	acT	8	8	AY.46	0.000833
ORF1ab/nsp3	1429	T1429I	aCc	aTc	8	8	B.1.160	0.00025
ORF1ab/nsp3	1429	T1429T	acC	acT	8	8	B.1.625	0.018824
ORF1ab/nsp3	1429	T1429T	acC	acT	7	7	AY.102	0.000186
ORF1ab/nsp3	1429	T1429N	aCc	aAc	7	7	AY.116	0.002007
ORF1ab/nsp3	1429	T1429I	aCc	aTc	7	7	AY.36	0.001037
ORF1ab/nsp3	1429	T1429T	acC	acT	7	7	AY.42	0.000282
ORF1ab/nsp3	1429	T1429N	aCc	aAc	7	7	AY.54	0.000667
ORF1ab/nsp3	1429	T1429I	aCc	aTc	7	7	B.1	0.000064
ORF1ab/nsp3	1429	T1429del	ACC	---	7	7	B.1.1	0.000127
ORF1ab/nsp3	1429	T1429I	aCc	aTc	7	7	B.1.1	0.000127
ORF1ab/nsp3	1429	T1429I	aCc	aTc	7	7	B.1.258	0.000466
ORF1ab/nsp3	1429	T1429N	aCc	aAc	7	7	B.1.621.1	0.003541
ORF1ab/nsp3	1429	T1429del1	acC	ac-	3	6	All	0.000001
ORF1ab/nsp3	1429	T1429del1	aCc	a-c	1	6	All	0
ORF1ab/nsp3	1429	T1429del1	AcC	-cA	1	6	All	0
ORF1ab/nsp3	1429	T1429del1	Acc	-cc	1	6	All	0
ORF1ab/nsp3	1429	T1429N	aCc	aAc	6	6	AY.100	0.000276
ORF1ab/nsp3	1429	T1429T	acC	acT	6	6	AY.113	0.000854
ORF1ab/nsp3	1429	T1429T	acC	acT	6	6	AY.19	0.006842
ORF1ab/nsp3	1429	T1429I	aCc	aTc	6	6	AY.25	0.000036
ORF1ab/nsp3	1429	T1429T	acC	acT	6	6	AY.27	0.000388
ORF1ab/nsp3	1429	T1429del	ACC	---	6	6	AY.43	0.000027
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	5	6	AY.59	0.002648
ORF1ab/nsp3	1429	T1429A	AcC	GcA	1	6	AY.59	0.00053
ORF1ab/nsp3	1429	T1429T	acC	acT	6	6	AY.85	0.002563
ORF1ab/nsp3	1429	T1429T	acC	acT	6	6	B.1.1.519	0.000238
ORF1ab/nsp3	1429	T1429T	acC	acT	6	6	B.1.177.42	0.005367
ORF1ab/nsp3	1429	T1429T	acC	acT	6	6	B.1.367	0.004754
ORF1ab/nsp3	1429	T1429I	aCc	aTc	6	6	P.1.14	0.000287
ORF1ab/nsp3	1429	T1429N	aCc	aAc	5	5	AY.103	0.000031
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	5	5	AY.103	0.000031
ORF1ab/nsp3	1429	T1429T	acC	acT	5	5	AY.116	0.001434
ORF1ab/nsp3	1429	T1429T	acC	acT	4	5	AY.20	0.000155
ORF1ab/nsp3	1429	T1429T	acC	acA	1	5	AY.20	0.000039
ORF1ab/nsp3	1429	T1429T	acC	acT	5	5	AY.39.1	0.000198
ORF1ab/nsp3	1429	T1429I	aCc	aTc	5	5	AY.39.1	0.000198
ORF1ab/nsp3	1429	T1429del	ACC	---	5	5	AY.4.5	0.000537
ORF1ab/nsp3	1429	T1429N	aCc	aAc	5	5	AY.43	0.000022
ORF1ab/nsp3	1429	T1429I	aCc	aTc	5	5	AY.43	0.000022
ORF1ab/nsp3	1429	T1429I	aCc	aTc	5	5	AY.46.4	0.000823
ORF1ab/nsp3	1429	T1429T	acC	acA	5	5	AY.46.4	0.000823
ORF1ab/nsp3	1429	T1429I	aCc	aTc	5	5	AY.75.1	0.000902
ORF1ab/nsp3	1429	T1429T	acC	acT	5	5	AY.9.1	0.000419
ORF1ab/nsp3	1429	T1429I	aCc	aTc	5	5	B.1.1.28	0.001556
ORF1ab/nsp3	1429	T1429T	acC	acT	5	5	B.1.1.309	0.02924
ORF1ab/nsp3	1429	T1429N	aCc	aAc	5	5	B.1.1.7	0.000004
ORF1ab/nsp3	1429	T1429T	acC	acT	5	5	B.1.160.14	0.010593
ORF1ab/nsp3	1429	T1429M	aCC	aTG	5	5	B.1.2	0.000044
ORF1ab/nsp3	1429	T1429T	acC	acT	5	5	P.1.15	0.001162
ORF1ab/nsp3	1429	T1429T	acC	acT	5	5	P.1.2	0.00578
ORF1ab/nsp3	1429	T1429T	acC	acA	3	4	AD.2	0.000657
ORF1ab/nsp3	1429	T1429T	acC	acT	1	4	AD.2	0.000219
ORF1ab/nsp3	1429	T1429T	acC	acT	4	4	AY.32	0.00213
ORF1ab/nsp3	1429	T1429T	acC	acT	4	4	AY.34	0.000388
ORF1ab/nsp3	1429	T1429I	aCc	aTc	4	4	AY.39	0.000099
ORF1ab/nsp3	1429	T1429I	aCc	aTc	4	4	AY.47	0.000124
ORF1ab/nsp3	1429	T1429T	acC	acT	3	4	AY.47	0.000093
ORF1ab/nsp3	1429	T1429T	acC	acA	1	4	AY.47	0.000031
ORF1ab/nsp3	1429	T1429T	acC	acT	4	4	AY.49	0.01278
ORF1ab/nsp3	1429	T1429T	acC	acT	4	4	AY.5.3	0.00135
ORF1ab/nsp3	1429	T1429T	acC	acT	3	4	AY.5.4	0.00083
ORF1ab/nsp3	1429	T1429T	acC	acA	1	4	AY.5.4	0.000277
ORF1ab/nsp3	1429	T1429I	aCc	aTc	4	4	AY.61	0.000419
ORF1ab/nsp3	1429	T1429I	aCc	aTc	4	4	AY.7.1	0.000451
ORF1ab/nsp3	1429	T1429T	acC	acT	4	4	AY.98.1	0.000194
ORF1ab/nsp3	1429	T1429I	aCc	aTc	4	4	B.1.1.222	0.000816
ORF1ab/nsp3	1429	T1429T	acC	acT	4	4	B.1.1.311	0.001433
ORF1ab/nsp3	1429	T1429T	acC	acT	4	4	B.1.1.317	0.001647
ORF1ab/nsp3	1429	T1429T	acC	acT	4	4	B.1.177.44	0.002076
ORF1ab/nsp3	1429	T1429T	acC	acT	4	4	B.1.243	0.000278
ORF1ab/nsp3	1429	T1429I	aCc	aTc	4	4	P.1.12	0.001936
ORF1ab/nsp3	1429	T1429T	acC	acT	3	4	P.1.14	0.000143
ORF1ab/nsp3	1429	T1429T	acC	acA	1	4	P.1.14	0.000048
ORF1ab/nsp3	1429	T1429I	aCc	aTc	3	3	AY.102	0.00008
ORF1ab/nsp3	1429	T1429I	aCc	aTc	3	3	AY.26	0.000085
ORF1ab/nsp3	1429	T1429I	aCc	aTc	3	3	AY.29	0.000047
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	AY.37	0.000948
ORF1ab/nsp3	1429	T1429I	aCc	aTc	3	3	AY.4.2	0.000065
ORF1ab/nsp3	1429	T1429N	aCc	aAc	3	3	AY.44	0.000018
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	AY.45	0.000365
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	AY.54	0.000286
ORF1ab/nsp3	1429	T1429T	acC	acT	2	3	AY.61	0.00021
ORF1ab/nsp3	1429	T1429T	acC	acA	1	3	AY.61	0.000105
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	AY.93	0.000819
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	AY.98	0.000237
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	3	3	AY.98.1	0.000145
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	AY.99.2	0.000276
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	AZ.1	0.002602
ORF1ab/nsp3	1429	T1429N	aCc	aAc	3	3	B.1	0.000027
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	B.1.1.157	0.00274
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	B.1.1.231	0.009288
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	B.1.1.253	0.007519
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	B.1.1.301	0.003538
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	B.1.1.318	0.000905
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	B.1.1.500	0.06
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	B.1.1.89	0.018182
ORF1ab/nsp3	1429	T1429del	ACC	---	3	3	B.1.177.4	0.000633
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	B.1.177.86	0.00055
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	3	3	B.1.2	0.000026
ORF1ab/nsp3	1429	T1429del	ACC	---	3	3	B.1.2	0.000026
ORF1ab/nsp3	1429	T1429I	aCc	aTc	3	3	B.1.221	0.000213
ORF1ab/nsp3	1429	T1429del	ACC	---	3	3	B.1.221	0.000213
ORF1ab/nsp3	1429	T1429I	aCc	aTc	3	3	B.1.36.1	0.003421
ORF1ab/nsp3	1429	T1429T	acC	acT	3	3	B.1.427	0.000151
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	3	3	B.1.526	0.000071
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	3	3	B.1.617.2	0.000011
ORF1ab/nsp3	1429	T1429del	ACC	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp3	1429	T1429T	acC	acA	2	3	B.1.637	0.000146
ORF1ab/nsp3	1429	T1429T	acC	acT	1	3	B.1.637	0.000073
ORF1ab/nsp3	1429	T1429I	aCc	aTc	3	3	P.1.15	0.000697
ORF1ab/nsp3	1429	T1429del	ACC	---	3	3	U.3	0.011583
ORF1ab/nsp3	1429	T1429S	Acc	Tcc	2	2	A.2.4	0.006734
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	A.21	0.00554
ORF1ab/nsp3	1429	T1429T	acC	acA	2	2	A.23.1	0.001408
ORF1ab/nsp3	1429	T1429del2	aCC	a--	2	2	All	0
ORF1ab/nsp3	1429	T1429R	ACC	CGT	2	2	All	0
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	AY.105	0.001286
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	AY.113	0.000285
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	AY.114	0.000462
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	AY.120	0.000074
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	AY.20	0.000078
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	AY.23	0.000139
ORF1ab/nsp3	1429	T1429N	aCc	aAc	2	2	AY.25	0.000012
ORF1ab/nsp3	1429	T1429N	aCc	aAc	2	2	AY.33	0.000134
ORF1ab/nsp3	1429	T1429S	Acc	Tcc	2	2	AY.44	0.000012
ORF1ab/nsp3	1429	T1429del	ACC	---	2	2	AY.5	0.000041
ORF1ab/nsp3	1429	T1429N	aCc	aAc	2	2	AY.73	0.001331
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	AY.9.2	0.000073
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	AY.95	0.001522
ORF1ab/nsp3	1429	T1429N	aCc	aAc	2	2	AY.99.2	0.000184
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	AY.99.2	0.000184
ORF1ab/nsp3	1429	T1429del	ACC	---	2	2	B	0.000256
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.1.161	0.007067
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.1.214	0.000111
ORF1ab/nsp3	1429	T1429N	aCc	aAc	2	2	B.1.1.214	0.000111
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.1.216	0.001781
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	B.1.1.294	0.002532
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.1.398	0.006452
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.1.448	0.004065
ORF1ab/nsp3	1429	T1429R	ACC	CGT	2	2	B.1.1.7	0.000002
ORF1ab/nsp3	1429	T1429del1	Acc	-cc	1	2	B.1.1.7	0.000001
ORF1ab/nsp3	1429	T1429del1	acC	ac-	1	2	B.1.1.7	0.000001
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.1.71	0.012121
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.111	0.00235
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	B.1.177	0.000026
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.177.21	0.000153
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.177.34	0.105263
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.177.43	0.002954
ORF1ab/nsp3	1429	T1429del	ACC	---	2	2	B.1.177.57	0.000562
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.177.68	0.030303
ORF1ab/nsp3	1429	T1429del	ACC	---	2	2	B.1.177.87	0.001456
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.206	0.001631
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	B.1.351	0.000059
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	B.1.36.31	0.003503
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	B.1.396	0.001411
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	B.1.429	0.000047
ORF1ab/nsp3	1429	T1429del	ACC	---	2	2	B.1.517	0.000854
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	B.1.595	0.000522
ORF1ab/nsp3	1429	T1429N	aCc	aAc	2	2	B.1.617.1	0.000258
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	C.37	0.000232
ORF1ab/nsp3	1429	T1429del	ACC	---	2	2	P.1	0.000032
ORF1ab/nsp3	1429	T1429T	acC	acT	2	2	Q.1	0.000253
ORF1ab/nsp3	1429	T1429I	aCc	aTc	2	2	R.1	0.00018
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1		0.055556
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	A	0.000387
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	A.2.4	0.003367
ORF1ab/nsp3	1429	T1429T	acC	acA	1	1	A.2.5	0.000499
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	A.25	0.018182
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	A.28	0.002646
ORF1ab/nsp3	1429	T1429P	Acc	Ccc	1	1	A.3	0.002096
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AK.1	0.012658
ORF1ab/nsp3	1429	T1429K	aCC	aAA	1	1	All	0
ORF1ab/nsp3	1429	T1429L	ACC	CTT	1	1	All	0
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.100	0.000046
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.103	0.000006
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.108	0.001103
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.111	0.000183
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	AY.117	0.000085
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.117	0.000085
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	AY.118	0.000063
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.12	0.000316
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	AY.12	0.000316
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.120	0.000037
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.120.2	0.001285
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.121	0.000135
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.13	0.000161
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	AY.20	0.000039
ORF1ab/nsp3	1429	T1429P	Acc	Ccc	1	1	AY.23	0.00007
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.24	0.000431
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	AY.25	0.000006
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.25	0.000006
ORF1ab/nsp3	1429	T1429L	ACC	CTT	1	1	AY.27	0.000065
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.3.1	0.000085
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.32	0.000532
ORF1ab/nsp3	1429	T1429T	acC	acA	1	1	AY.33	0.000067
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	AY.34.1	0.00051
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	AY.35	0.000233
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.36	0.000148
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.38	0.000499
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	AY.4	0.000002
ORF1ab/nsp3	1429	T1429P	Acc	Ccc	1	1	AY.4	0.000002
ORF1ab/nsp3	1429	T1429del1	acC	ac-	1	1	AY.4	0.000002
ORF1ab/nsp3	1429	T1429S	aCc	aGc	1	1	AY.4	0.000002
ORF1ab/nsp3	1429	T1429T	acC	acA	1	1	AY.4.2.1	0.000149
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.41	0.000294
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.42	0.00004
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	AY.42	0.00004
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.42	0.00004
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.44	0.000006
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	AY.44	0.000006
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.45	0.000122
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	AY.46	0.000104
ORF1ab/nsp3	1429	T1429P	Acc	Ccc	1	1	AY.5	0.000021
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.56	0.001605
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	AY.57	0.000656
ORF1ab/nsp3	1429	T1429T	acC	acA	1	1	AY.59	0.00053
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.6	0.000041
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.6	0.000041
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.60	0.000938
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.61	0.000105
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	AY.61	0.000105
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.67	0.000464
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.67	0.000464
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.68	0.000274
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.7	0.000196
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.7	0.000196
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.70	0.000209
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.72	0.001361
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.75	0.000056
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.75.1	0.00018
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.79	0.001211
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.84	0.000437
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.86	0.00083
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	AY.9	0.000068
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.9	0.000068
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.9	0.000068
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	AY.9.1	0.000084
ORF1ab/nsp3	1429	T1429P	Acc	Ccc	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.92	0.000287
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	AY.93	0.000273
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	AY.96	0.002075
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	AY.98.1	0.000048
ORF1ab/nsp3	1429	T1429S	Acc	Tcc	1	1	AY.98.1	0.000048
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	AY.99.1	0.001553
ORF1ab/nsp3	1429	T1429T	acC	acA	1	1	B	0.000128
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	B.1	0.000009
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	B.1.1	0.000018
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.1	0.000018
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.1	0.000327
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.1.176	0.000439
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.184	0.058824
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.1.186	0.003436
ORF1ab/nsp3	1429	T1429T	acC	acG	1	1	B.1.1.194	0.00495
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.1.236	0.006897
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.1.265	0.003155
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.27	0.00565
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.277	0.000759
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.1.315	0.008475
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	B.1.1.368	0.003086
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.369	0.000446
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.37	0.000193
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.1.39	0.00051
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.1.397	0.002252
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.1.413	0.006897
ORF1ab/nsp3	1429	T1429del2	aCC	a--	1	1	B.1.1.44	0.00241
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.482	0.023256
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.487	0.005587
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.1.51	0.001718
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.1.54	0.003021
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.63	0.000386
ORF1ab/nsp3	1429	T1429S	Acc	Tcc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1429	T1429del2	aCC	a--	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1429	T1429P	Acc	Ccc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.1.95	0.019608
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.104	0.00369
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.110.3	0.000718
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.126	0.001276
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	B.1.160.12	0.00641
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.160.23	0.004831
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.160.7	0.002079
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.160.9	0.007194
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.177	0.000013
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.177.15	0.000631
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.177.35	0.000691
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.177.60	0.000218
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.177.62	0.001192
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp3	1429	T1429del1	acC	ac-	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.177.76	0.002494
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.2	0.000009
ORF1ab/nsp3	1429	T1429T	acC	acA	1	1	B.1.23	0.006061
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.232	0.000537
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	B.1.234	0.000132
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.234	0.000132
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.240	0.000216
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.240	0.000216
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	B.1.243	0.00007
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.243	0.00007
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.258	0.000067
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.258.10	0.011364
ORF1ab/nsp3	1429	T1429M	aCC	aTG	1	1	B.1.298	0.002114
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.319	0.003049
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.349	0.000715
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.351.3	0.000876
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.36.17	0.000494
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.36.22	0.001208
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.36.22	0.001208
ORF1ab/nsp3	1429	T1429T	acC	acA	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.36.38	0.001642
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.369	0.000285
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.369	0.000285
ORF1ab/nsp3	1429	T1429T	acC	acA	1	1	B.1.404	0.001302
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.415	0.014286
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.466.2	0.000391
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.497	0.000315
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.509	0.000866
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.517	0.000427
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.525	0.000113
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.525	0.000113
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.526	0.000024
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.526	0.000024
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.540	0.009709
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.560	0.00463
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.575	0.000303
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.575	0.000303
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.595	0.000261
ORF1ab/nsp3	1429	T1429M	aCC	aTG	1	1	B.1.595	0.000261
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.596	0.000087
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.596	0.000087
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	B.1.596	0.000087
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.598	0.016949
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.600	0.005848
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.1.609	0.000479
ORF1ab/nsp3	1429	T1429del1	AcC	-cA	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.618	0.004032
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.619	0.000871
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.1.619.1	0.000641
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.1.630	0.005236
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	B.1.637	0.000073
ORF1ab/nsp3	1429	T1429M	aCC	aTG	1	1	B.1.9.5	0.005682
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.20	0.023256
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	B.34	0.013699
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	B.52	0.010101
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	B.61	0.005747
ORF1ab/nsp3	1429	T1429K	aCC	aAA	1	1	C.35	0.000774
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	C.36.2	0.034483
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	C.37	0.000116
ORF1ab/nsp3	1429	T1429T	acC	acA	1	1	C.37.1	0.002618
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	C.8	0.004464
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	D.2	0.000075
ORF1ab/nsp3	1429	T1429S	Acc	Tcc	1	1	D.2	0.000075
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	N.5	0.001767
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	P.1	0.000016
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	P.1.1	0.000318
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	P.1.12	0.000484
ORF1ab/nsp3	1429	T1429del	ACC	---	1	1	P.1.15	0.000232
ORF1ab/nsp3	1429	T1429I	aCc	aTc	1	1	P.1.16	0.000374
ORF1ab/nsp3	1429	T1429del1	aCc	a-c	1	1	P.1.16	0.000374
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	P.1.17	0.000162
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	P.2	0.000187
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	P.2	0.000187
ORF1ab/nsp3	1429	T1429N	aCc	aAc	1	1	Q.8	0.000165
ORF1ab/nsp3	1429	T1429T	acC	acT	1	1	R.1	0.00009
ORF1ab/nsp3	1429	T1429A	Acc	Gcc	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.