CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1429

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31429T1429TT2247TsynacCacT259725010.9630347004-7006
ORF1ab/nsp31429T1429TT2247TsynacCacA2597870.03350027004-7006
ORF1ab/nsp31429T1429TT2247TsynacCacG259790.003465547004-7006
ORF1ab/nsp31429T1429IT2247InonsynaCcaTc93893817004-7006
ORF1ab/nsp31429T1429NT2247NnonsynaCcaAc41941917004-7006
ORF1ab/nsp31429T1429delT2247deldelACC---22922917004-7006
ORF1ab/nsp31429T1429PT2247PnonsynAccCcc979717004-7006
ORF1ab/nsp31429T1429AT2247AnonsynAccGcc73720.9863017004-7006
ORF1ab/nsp31429T1429AT2247AnonsynAcCGcA7310.01369867004-7006
ORF1ab/nsp31429T1429MT2247MnonsynaCCaTG585817004-7006
ORF1ab/nsp31429T1429ST2247SnonsynAccTcc870.8757004-7006
ORF1ab/nsp31429T1429ST2247SnonsynaCcaGc810.1257004-7006
ORF1ab/nsp31429T1429del1T2247del1delacCac-630.57004-7006
ORF1ab/nsp31429T1429del1T2247del1delaCca-c610.1666677004-7006
ORF1ab/nsp31429T1429del1T2247del1delAcC-cA610.1666677004-7006
ORF1ab/nsp31429T1429del1T2247del1delAcc-cc610.1666677004-7006
ORF1ab/nsp31429T1429del2T2247del2delaCCa--2217004-7006
ORF1ab/nsp31429T1429RT2247RnonsynACCCGT2217004-7006
ORF1ab/nsp31429T1429KT2247KnonsynaCCaAA1117004-7006
ORF1ab/nsp31429T1429LT2247LnonsynACCCTT1117004-7006

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31429T1429TacCacT25012597All0.000478
ORF1ab/nsp31429T1429TacCacA872597All0.000017
ORF1ab/nsp31429T1429TacCacG92597All0.000002
ORF1ab/nsp31429T1429IaCcaTc938938All0.000179
ORF1ab/nsp31429T1429TacCacT426426B.1.36.380.699507
ORF1ab/nsp31429T1429NaCcaAc419419All0.00008
ORF1ab/nsp31429T1429IaCcaTc356356B.1.1.70.000319
ORF1ab/nsp31429T1429TacCacT257274B.1.1.70.00023
ORF1ab/nsp31429T1429TacCacA17274B.1.1.70.000015
ORF1ab/nsp31429T1429delACC---229229All0.000044
ORF1ab/nsp31429T1429TacCacT229229AY.140.020155
ORF1ab/nsp31429T1429NaCcaAc166166AT.10.851282
ORF1ab/nsp31429T1429TacCacT130130B.1.4290.003059
ORF1ab/nsp31429T1429TacCacT125129AY.40.000195
ORF1ab/nsp31429T1429TacCacA4129AY.40.000006
ORF1ab/nsp31429T1429TacCacT120120B.1.3490.085776
ORF1ab/nsp31429T1429PAccCcc9797All0.000019
ORF1ab/nsp31429T1429TacCacT8793AY.440.00053
ORF1ab/nsp31429T1429TacCacA593AY.440.00003
ORF1ab/nsp31429T1429TacCacG193AY.440.000006
ORF1ab/nsp31429T1429delACC---8686B.1.1.70.000077
ORF1ab/nsp31429T1429TacCacT8285B.10.000751
ORF1ab/nsp31429T1429TacCacG385B.10.000027
ORF1ab/nsp31429T1429PAccCcc8383B.1.617.20.000313
ORF1ab/nsp31429T1429TacCacT8080AB.10.655738
ORF1ab/nsp31429T1429TacCacT7177B.1.617.20.000267
ORF1ab/nsp31429T1429TacCacA477B.1.617.20.000015
ORF1ab/nsp31429T1429TacCacG277B.1.617.20.000008
ORF1ab/nsp31429T1429AAccGcc7273All0.000014
ORF1ab/nsp31429T1429AAcCGcA173All0
ORF1ab/nsp31429T1429IaCcaTc6969B.1.258.140.067647
ORF1ab/nsp31429T1429TacCacT6068B.1.20.000528
ORF1ab/nsp31429T1429TacCacA668B.1.20.000053
ORF1ab/nsp31429T1429TacCacG268B.1.20.000018
ORF1ab/nsp31429T1429MaCCaTG5858All0.000011
ORF1ab/nsp31429T1429NaCcaAc5757AY.40.000089
ORF1ab/nsp31429T1429TacCacT5151P.10.000803
ORF1ab/nsp31429T1429MaCCaTG5050B.10.000458
ORF1ab/nsp31429T1429NaCcaAc4848B.1.617.20.000181
ORF1ab/nsp31429T1429IaCcaTc4848P.10.000756
ORF1ab/nsp31429T1429TacCacT4747AY.1030.000292
ORF1ab/nsp31429T1429TacCacT4045AY.430.000177
ORF1ab/nsp31429T1429TacCacA545AY.430.000022
ORF1ab/nsp31429T1429TacCacT4141B.1.1.3941
ORF1ab/nsp31429T1429IaCcaTc3939B.1.617.20.000147
ORF1ab/nsp31429T1429IaCcaTc3636B.1.6370.002631
ORF1ab/nsp31429T1429IaCcaTc3333AY.230.002302
ORF1ab/nsp31429T1429NaCcaAc2929AY.390.000717
ORF1ab/nsp31429T1429IaCcaTc2929AY.40.000045
ORF1ab/nsp31429T1429TacCacT2828B.1.177.180.032483
ORF1ab/nsp31429T1429NaCcaAc2727AY.690.00504
ORF1ab/nsp31429T1429IaCcaTc2626AY.370.008217
ORF1ab/nsp31429T1429AAccGcc2323B.1.1.70.000021
ORF1ab/nsp31429T1429TacCacT2021B.1.5250.002263
ORF1ab/nsp31429T1429TacCacA121B.1.5250.000113
ORF1ab/nsp31429T1429IaCcaTc2020B.1.4270.00101
ORF1ab/nsp31429T1429TacCacT1919AY.250.000114
ORF1ab/nsp31429T1429TacCacA1018AY.30.000099
ORF1ab/nsp31429T1429TacCacT818AY.30.00008
ORF1ab/nsp31429T1429delACC---1717B.1.1770.000224
ORF1ab/nsp31429T1429TacCacT1717B.1.36.330.128788
ORF1ab/nsp31429T1429TacCacT1616AY.50.00033
ORF1ab/nsp31429T1429TacCacT1616AY.640.009524
ORF1ab/nsp31429T1429IaCcaTc1616B.1.20.000141
ORF1ab/nsp31429T1429TacCacT1116B.1.2210.000781
ORF1ab/nsp31429T1429TacCacA516B.1.2210.000355
ORF1ab/nsp31429T1429IaCcaTc1515AY.30.000149
ORF1ab/nsp31429T1429TacCacT1415B.1.10.000254
ORF1ab/nsp31429T1429TacCacA115B.1.10.000018
ORF1ab/nsp31429T1429IaCcaTc1515B.1.1.2070.01773
ORF1ab/nsp31429T1429delACC---1414AY.40.000022
ORF1ab/nsp31429T1429TacCacT1414AY.60.000576
ORF1ab/nsp31429T1429TacCacT1414B.1.1600.000437
ORF1ab/nsp31429T1429TacCacT1414B.1.360.002043
ORF1ab/nsp31429T1429TacCacT1313AY.4.20.000282
ORF1ab/nsp31429T1429TacCacT1313B.1.2580.000865
ORF1ab/nsp31429T1429TacCacT1313B.1.258.170.001352
ORF1ab/nsp31429T1429IaCcaTc1313B.1.5960.001133
ORF1ab/nsp31429T1429TacCacT1212AY.290.000189
ORF1ab/nsp31429T1429TacCacT1212B.1.1770.000158
ORF1ab/nsp31429T1429TacCacT1212B.1.3510.000357
ORF1ab/nsp31429T1429TacCacT1111AY.260.000311
ORF1ab/nsp31429T1429delACC---1111B.10.000101
ORF1ab/nsp31429T1429TacCacT1010B.1.2340.001319
ORF1ab/nsp31429T1429TacCacT910B.1.617.10.001161
ORF1ab/nsp31429T1429TacCacA110B.1.617.10.000129
ORF1ab/nsp31429T1429TacCacT1010B.1.6280.003524
ORF1ab/nsp31429T1429TacCacT99AY.1000.000414
ORF1ab/nsp31429T1429IaCcaTc99AY.1030.000056
ORF1ab/nsp31429T1429IaCcaTc99AY.1190.000318
ORF1ab/nsp31429T1429TacCacT89AY.1190.000282
ORF1ab/nsp31429T1429TacCacA19AY.1190.000035
ORF1ab/nsp31429T1429TacCacT99B.1.1.3060.003946
ORF1ab/nsp31429T1429AAccGcc99B.1.1.5190.000357
ORF1ab/nsp31429T1429IaCcaTc99B.1.6210.000797
ORF1ab/nsp31429T1429delACC---880.444444
ORF1ab/nsp31429T1429IaCcaTc88A.23.10.005634
ORF1ab/nsp31429T1429SAccTcc78All0.000001
ORF1ab/nsp31429T1429SaCcaGc18All0
ORF1ab/nsp31429T1429NaCcaAc88AY.1020.000212
ORF1ab/nsp31429T1429TacCacT88AY.1180.000501
ORF1ab/nsp31429T1429IaCcaTc88AY.270.000518
ORF1ab/nsp31429T1429TacCacT78AY.390.000173
ORF1ab/nsp31429T1429TacCacA18AY.390.000025
ORF1ab/nsp31429T1429PAccCcc88AY.430.000035
ORF1ab/nsp31429T1429TacCacT88AY.460.000833
ORF1ab/nsp31429T1429IaCcaTc88B.1.1600.00025
ORF1ab/nsp31429T1429TacCacT88B.1.6250.018824
ORF1ab/nsp31429T1429TacCacT77AY.1020.000186
ORF1ab/nsp31429T1429NaCcaAc77AY.1160.002007
ORF1ab/nsp31429T1429IaCcaTc77AY.360.001037
ORF1ab/nsp31429T1429TacCacT77AY.420.000282
ORF1ab/nsp31429T1429NaCcaAc77AY.540.000667
ORF1ab/nsp31429T1429IaCcaTc77B.10.000064
ORF1ab/nsp31429T1429delACC---77B.1.10.000127
ORF1ab/nsp31429T1429IaCcaTc77B.1.10.000127
ORF1ab/nsp31429T1429IaCcaTc77B.1.2580.000466
ORF1ab/nsp31429T1429NaCcaAc77B.1.621.10.003541
ORF1ab/nsp31429T1429del1acCac-36All0.000001
ORF1ab/nsp31429T1429del1aCca-c16All0
ORF1ab/nsp31429T1429del1AcC-cA16All0
ORF1ab/nsp31429T1429del1Acc-cc16All0
ORF1ab/nsp31429T1429NaCcaAc66AY.1000.000276
ORF1ab/nsp31429T1429TacCacT66AY.1130.000854
ORF1ab/nsp31429T1429TacCacT66AY.190.006842
ORF1ab/nsp31429T1429IaCcaTc66AY.250.000036
ORF1ab/nsp31429T1429TacCacT66AY.270.000388
ORF1ab/nsp31429T1429delACC---66AY.430.000027
ORF1ab/nsp31429T1429AAccGcc56AY.590.002648
ORF1ab/nsp31429T1429AAcCGcA16AY.590.00053
ORF1ab/nsp31429T1429TacCacT66AY.850.002563
ORF1ab/nsp31429T1429TacCacT66B.1.1.5190.000238
ORF1ab/nsp31429T1429TacCacT66B.1.177.420.005367
ORF1ab/nsp31429T1429TacCacT66B.1.3670.004754
ORF1ab/nsp31429T1429IaCcaTc66P.1.140.000287
ORF1ab/nsp31429T1429NaCcaAc55AY.1030.000031
ORF1ab/nsp31429T1429AAccGcc55AY.1030.000031
ORF1ab/nsp31429T1429TacCacT55AY.1160.001434
ORF1ab/nsp31429T1429TacCacT45AY.200.000155
ORF1ab/nsp31429T1429TacCacA15AY.200.000039
ORF1ab/nsp31429T1429TacCacT55AY.39.10.000198
ORF1ab/nsp31429T1429IaCcaTc55AY.39.10.000198
ORF1ab/nsp31429T1429delACC---55AY.4.50.000537
ORF1ab/nsp31429T1429NaCcaAc55AY.430.000022
ORF1ab/nsp31429T1429IaCcaTc55AY.430.000022
ORF1ab/nsp31429T1429IaCcaTc55AY.46.40.000823
ORF1ab/nsp31429T1429TacCacA55AY.46.40.000823
ORF1ab/nsp31429T1429IaCcaTc55AY.75.10.000902
ORF1ab/nsp31429T1429TacCacT55AY.9.10.000419
ORF1ab/nsp31429T1429IaCcaTc55B.1.1.280.001556
ORF1ab/nsp31429T1429TacCacT55B.1.1.3090.02924
ORF1ab/nsp31429T1429NaCcaAc55B.1.1.70.000004
ORF1ab/nsp31429T1429TacCacT55B.1.160.140.010593
ORF1ab/nsp31429T1429MaCCaTG55B.1.20.000044
ORF1ab/nsp31429T1429TacCacT55P.1.150.001162
ORF1ab/nsp31429T1429TacCacT55P.1.20.00578
ORF1ab/nsp31429T1429TacCacA34AD.20.000657
ORF1ab/nsp31429T1429TacCacT14AD.20.000219
ORF1ab/nsp31429T1429TacCacT44AY.320.00213
ORF1ab/nsp31429T1429TacCacT44AY.340.000388
ORF1ab/nsp31429T1429IaCcaTc44AY.390.000099
ORF1ab/nsp31429T1429IaCcaTc44AY.470.000124
ORF1ab/nsp31429T1429TacCacT34AY.470.000093
ORF1ab/nsp31429T1429TacCacA14AY.470.000031
ORF1ab/nsp31429T1429TacCacT44AY.490.01278
ORF1ab/nsp31429T1429TacCacT44AY.5.30.00135
ORF1ab/nsp31429T1429TacCacT34AY.5.40.00083
ORF1ab/nsp31429T1429TacCacA14AY.5.40.000277
ORF1ab/nsp31429T1429IaCcaTc44AY.610.000419
ORF1ab/nsp31429T1429IaCcaTc44AY.7.10.000451
ORF1ab/nsp31429T1429TacCacT44AY.98.10.000194
ORF1ab/nsp31429T1429IaCcaTc44B.1.1.2220.000816
ORF1ab/nsp31429T1429TacCacT44B.1.1.3110.001433
ORF1ab/nsp31429T1429TacCacT44B.1.1.3170.001647
ORF1ab/nsp31429T1429TacCacT44B.1.177.440.002076
ORF1ab/nsp31429T1429TacCacT44B.1.2430.000278
ORF1ab/nsp31429T1429IaCcaTc44P.1.120.001936
ORF1ab/nsp31429T1429TacCacT34P.1.140.000143
ORF1ab/nsp31429T1429TacCacA14P.1.140.000048
ORF1ab/nsp31429T1429IaCcaTc33AY.1020.00008
ORF1ab/nsp31429T1429IaCcaTc33AY.260.000085
ORF1ab/nsp31429T1429IaCcaTc33AY.290.000047
ORF1ab/nsp31429T1429TacCacT33AY.370.000948
ORF1ab/nsp31429T1429IaCcaTc33AY.4.20.000065
ORF1ab/nsp31429T1429NaCcaAc33AY.440.000018
ORF1ab/nsp31429T1429TacCacT33AY.450.000365
ORF1ab/nsp31429T1429TacCacT33AY.540.000286
ORF1ab/nsp31429T1429TacCacT23AY.610.00021
ORF1ab/nsp31429T1429TacCacA13AY.610.000105
ORF1ab/nsp31429T1429TacCacT33AY.930.000819
ORF1ab/nsp31429T1429TacCacT33AY.980.000237
ORF1ab/nsp31429T1429AAccGcc33AY.98.10.000145
ORF1ab/nsp31429T1429TacCacT33AY.99.20.000276
ORF1ab/nsp31429T1429TacCacT33AZ.10.002602
ORF1ab/nsp31429T1429NaCcaAc33B.10.000027
ORF1ab/nsp31429T1429TacCacT33B.1.1.1570.00274
ORF1ab/nsp31429T1429TacCacT33B.1.1.2310.009288
ORF1ab/nsp31429T1429TacCacT33B.1.1.2530.007519
ORF1ab/nsp31429T1429TacCacT33B.1.1.3010.003538
ORF1ab/nsp31429T1429TacCacT33B.1.1.3180.000905
ORF1ab/nsp31429T1429TacCacT33B.1.1.5000.06
ORF1ab/nsp31429T1429TacCacT33B.1.1.890.018182
ORF1ab/nsp31429T1429delACC---33B.1.177.40.000633
ORF1ab/nsp31429T1429TacCacT33B.1.177.860.00055
ORF1ab/nsp31429T1429AAccGcc33B.1.20.000026
ORF1ab/nsp31429T1429delACC---33B.1.20.000026
ORF1ab/nsp31429T1429IaCcaTc33B.1.2210.000213
ORF1ab/nsp31429T1429delACC---33B.1.2210.000213
ORF1ab/nsp31429T1429IaCcaTc33B.1.36.10.003421
ORF1ab/nsp31429T1429TacCacT33B.1.4270.000151
ORF1ab/nsp31429T1429AAccGcc33B.1.5260.000071
ORF1ab/nsp31429T1429AAccGcc33B.1.617.20.000011
ORF1ab/nsp31429T1429delACC---33B.1.617.20.000011
ORF1ab/nsp31429T1429TacCacA23B.1.6370.000146
ORF1ab/nsp31429T1429TacCacT13B.1.6370.000073
ORF1ab/nsp31429T1429IaCcaTc33P.1.150.000697
ORF1ab/nsp31429T1429delACC---33U.30.011583
ORF1ab/nsp31429T1429SAccTcc22A.2.40.006734
ORF1ab/nsp31429T1429TacCacT22A.210.00554
ORF1ab/nsp31429T1429TacCacA22A.23.10.001408
ORF1ab/nsp31429T1429del2aCCa--22All0
ORF1ab/nsp31429T1429RACCCGT22All0
ORF1ab/nsp31429T1429IaCcaTc22AY.1050.001286
ORF1ab/nsp31429T1429IaCcaTc22AY.1130.000285
ORF1ab/nsp31429T1429TacCacT22AY.1140.000462
ORF1ab/nsp31429T1429TacCacT22AY.1200.000074
ORF1ab/nsp31429T1429IaCcaTc22AY.200.000078
ORF1ab/nsp31429T1429TacCacT22AY.230.000139
ORF1ab/nsp31429T1429NaCcaAc22AY.250.000012
ORF1ab/nsp31429T1429NaCcaAc22AY.330.000134
ORF1ab/nsp31429T1429SAccTcc22AY.440.000012
ORF1ab/nsp31429T1429delACC---22AY.50.000041
ORF1ab/nsp31429T1429NaCcaAc22AY.730.001331
ORF1ab/nsp31429T1429IaCcaTc22AY.9.20.000073
ORF1ab/nsp31429T1429TacCacT22AY.950.001522
ORF1ab/nsp31429T1429NaCcaAc22AY.99.20.000184
ORF1ab/nsp31429T1429IaCcaTc22AY.99.20.000184
ORF1ab/nsp31429T1429delACC---22B0.000256
ORF1ab/nsp31429T1429TacCacT22B.1.1.1610.007067
ORF1ab/nsp31429T1429TacCacT22B.1.1.2140.000111
ORF1ab/nsp31429T1429NaCcaAc22B.1.1.2140.000111
ORF1ab/nsp31429T1429TacCacT22B.1.1.2160.001781
ORF1ab/nsp31429T1429IaCcaTc22B.1.1.2940.002532
ORF1ab/nsp31429T1429TacCacT22B.1.1.3980.006452
ORF1ab/nsp31429T1429TacCacT22B.1.1.4480.004065
ORF1ab/nsp31429T1429RACCCGT22B.1.1.70.000002
ORF1ab/nsp31429T1429del1Acc-cc12B.1.1.70.000001
ORF1ab/nsp31429T1429del1acCac-12B.1.1.70.000001
ORF1ab/nsp31429T1429TacCacT22B.1.1.710.012121
ORF1ab/nsp31429T1429TacCacT22B.1.1110.00235
ORF1ab/nsp31429T1429IaCcaTc22B.1.1770.000026
ORF1ab/nsp31429T1429TacCacT22B.1.177.210.000153
ORF1ab/nsp31429T1429TacCacT22B.1.177.340.105263
ORF1ab/nsp31429T1429TacCacT22B.1.177.430.002954
ORF1ab/nsp31429T1429delACC---22B.1.177.570.000562
ORF1ab/nsp31429T1429TacCacT22B.1.177.680.030303
ORF1ab/nsp31429T1429delACC---22B.1.177.870.001456
ORF1ab/nsp31429T1429TacCacT22B.1.2060.001631
ORF1ab/nsp31429T1429IaCcaTc22B.1.3510.000059
ORF1ab/nsp31429T1429IaCcaTc22B.1.36.310.003503
ORF1ab/nsp31429T1429TacCacT22B.1.3960.001411
ORF1ab/nsp31429T1429IaCcaTc22B.1.4290.000047
ORF1ab/nsp31429T1429delACC---22B.1.5170.000854
ORF1ab/nsp31429T1429IaCcaTc22B.1.5950.000522
ORF1ab/nsp31429T1429NaCcaAc22B.1.617.10.000258
ORF1ab/nsp31429T1429IaCcaTc22C.370.000232
ORF1ab/nsp31429T1429delACC---22P.10.000032
ORF1ab/nsp31429T1429TacCacT22Q.10.000253
ORF1ab/nsp31429T1429IaCcaTc22R.10.00018
ORF1ab/nsp31429T1429TacCacT110.055556
ORF1ab/nsp31429T1429delACC---11A0.000387
ORF1ab/nsp31429T1429delACC---11A.2.40.003367
ORF1ab/nsp31429T1429TacCacA11A.2.50.000499
ORF1ab/nsp31429T1429NaCcaAc11A.250.018182
ORF1ab/nsp31429T1429delACC---11A.280.002646
ORF1ab/nsp31429T1429PAccCcc11A.30.002096
ORF1ab/nsp31429T1429TacCacT11AK.10.012658
ORF1ab/nsp31429T1429KaCCaAA11All0
ORF1ab/nsp31429T1429LACCCTT11All0
ORF1ab/nsp31429T1429IaCcaTc11AY.1000.000046
ORF1ab/nsp31429T1429delACC---11AY.1030.000006
ORF1ab/nsp31429T1429TacCacT11AY.1080.001103
ORF1ab/nsp31429T1429IaCcaTc11AY.1110.000183
ORF1ab/nsp31429T1429AAccGcc11AY.1170.000085
ORF1ab/nsp31429T1429TacCacT11AY.1170.000085
ORF1ab/nsp31429T1429NaCcaAc11AY.1180.000063
ORF1ab/nsp31429T1429TacCacT11AY.120.000316
ORF1ab/nsp31429T1429NaCcaAc11AY.120.000316
ORF1ab/nsp31429T1429delACC---11AY.1200.000037
ORF1ab/nsp31429T1429TacCacT11AY.120.20.001285
ORF1ab/nsp31429T1429IaCcaTc11AY.1210.000135
ORF1ab/nsp31429T1429TacCacT11AY.130.000161
ORF1ab/nsp31429T1429AAccGcc11AY.200.000039
ORF1ab/nsp31429T1429PAccCcc11AY.230.00007
ORF1ab/nsp31429T1429delACC---11AY.240.000431
ORF1ab/nsp31429T1429AAccGcc11AY.250.000006
ORF1ab/nsp31429T1429delACC---11AY.250.000006
ORF1ab/nsp31429T1429LACCCTT11AY.270.000065
ORF1ab/nsp31429T1429TacCacT11AY.3.10.000085
ORF1ab/nsp31429T1429IaCcaTc11AY.320.000532
ORF1ab/nsp31429T1429TacCacA11AY.330.000067
ORF1ab/nsp31429T1429NaCcaAc11AY.34.10.00051
ORF1ab/nsp31429T1429AAccGcc11AY.350.000233
ORF1ab/nsp31429T1429delACC---11AY.360.000148
ORF1ab/nsp31429T1429TacCacT11AY.380.000499
ORF1ab/nsp31429T1429AAccGcc11AY.40.000002
ORF1ab/nsp31429T1429PAccCcc11AY.40.000002
ORF1ab/nsp31429T1429del1acCac-11AY.40.000002
ORF1ab/nsp31429T1429SaCcaGc11AY.40.000002
ORF1ab/nsp31429T1429TacCacA11AY.4.2.10.000149
ORF1ab/nsp31429T1429IaCcaTc11AY.4.50.000107
ORF1ab/nsp31429T1429TacCacT11AY.410.000294
ORF1ab/nsp31429T1429delACC---11AY.420.00004
ORF1ab/nsp31429T1429NaCcaAc11AY.420.00004
ORF1ab/nsp31429T1429IaCcaTc11AY.420.00004
ORF1ab/nsp31429T1429IaCcaTc11AY.440.000006
ORF1ab/nsp31429T1429AAccGcc11AY.440.000006
ORF1ab/nsp31429T1429IaCcaTc11AY.450.000122
ORF1ab/nsp31429T1429NaCcaAc11AY.460.000104
ORF1ab/nsp31429T1429PAccCcc11AY.50.000021
ORF1ab/nsp31429T1429TacCacT11AY.560.001605
ORF1ab/nsp31429T1429AAccGcc11AY.570.000656
ORF1ab/nsp31429T1429TacCacA11AY.590.00053
ORF1ab/nsp31429T1429delACC---11AY.60.000041
ORF1ab/nsp31429T1429IaCcaTc11AY.60.000041
ORF1ab/nsp31429T1429delACC---11AY.600.000938
ORF1ab/nsp31429T1429delACC---11AY.610.000105
ORF1ab/nsp31429T1429NaCcaAc11AY.610.000105
ORF1ab/nsp31429T1429TacCacT11AY.670.000464
ORF1ab/nsp31429T1429IaCcaTc11AY.670.000464
ORF1ab/nsp31429T1429TacCacT11AY.680.000274
ORF1ab/nsp31429T1429delACC---11AY.70.000196
ORF1ab/nsp31429T1429IaCcaTc11AY.70.000196
ORF1ab/nsp31429T1429IaCcaTc11AY.700.000209
ORF1ab/nsp31429T1429delACC---11AY.720.001361
ORF1ab/nsp31429T1429TacCacT11AY.750.000056
ORF1ab/nsp31429T1429TacCacT11AY.75.10.00018
ORF1ab/nsp31429T1429TacCacT11AY.790.001211
ORF1ab/nsp31429T1429TacCacT11AY.840.000437
ORF1ab/nsp31429T1429TacCacT11AY.860.00083
ORF1ab/nsp31429T1429AAccGcc11AY.90.000068
ORF1ab/nsp31429T1429delACC---11AY.90.000068
ORF1ab/nsp31429T1429TacCacT11AY.90.000068
ORF1ab/nsp31429T1429NaCcaAc11AY.9.10.000084
ORF1ab/nsp31429T1429PAccCcc11AY.9.20.000037
ORF1ab/nsp31429T1429delACC---11AY.9.20.000037
ORF1ab/nsp31429T1429TacCacT11AY.9.20.000037
ORF1ab/nsp31429T1429TacCacT11AY.920.000287
ORF1ab/nsp31429T1429NaCcaAc11AY.930.000273
ORF1ab/nsp31429T1429TacCacT11AY.960.002075
ORF1ab/nsp31429T1429IaCcaTc11AY.98.10.000048
ORF1ab/nsp31429T1429SAccTcc11AY.98.10.000048
ORF1ab/nsp31429T1429delACC---11AY.99.10.001553
ORF1ab/nsp31429T1429TacCacA11B0.000128
ORF1ab/nsp31429T1429AAccGcc11B.10.000009
ORF1ab/nsp31429T1429AAccGcc11B.1.10.000018
ORF1ab/nsp31429T1429NaCcaAc11B.1.10.000018
ORF1ab/nsp31429T1429TacCacT11B.1.1.10.000327
ORF1ab/nsp31429T1429IaCcaTc11B.1.1.1760.000439
ORF1ab/nsp31429T1429TacCacT11B.1.1.1840.058824
ORF1ab/nsp31429T1429IaCcaTc11B.1.1.1860.003436
ORF1ab/nsp31429T1429TacCacG11B.1.1.1940.00495
ORF1ab/nsp31429T1429IaCcaTc11B.1.1.2140.000055
ORF1ab/nsp31429T1429delACC---11B.1.1.2360.006897
ORF1ab/nsp31429T1429IaCcaTc11B.1.1.2650.003155
ORF1ab/nsp31429T1429TacCacT11B.1.1.270.00565
ORF1ab/nsp31429T1429TacCacT11B.1.1.2770.000759
ORF1ab/nsp31429T1429delACC---11B.1.1.3150.008475
ORF1ab/nsp31429T1429AAccGcc11B.1.1.3680.003086
ORF1ab/nsp31429T1429TacCacT11B.1.1.3690.000446
ORF1ab/nsp31429T1429TacCacT11B.1.1.370.000193
ORF1ab/nsp31429T1429TacCacT11B.1.1.3720.000689
ORF1ab/nsp31429T1429IaCcaTc11B.1.1.390.00051
ORF1ab/nsp31429T1429NaCcaAc11B.1.1.3970.002252
ORF1ab/nsp31429T1429delACC---11B.1.1.4090.002833
ORF1ab/nsp31429T1429NaCcaAc11B.1.1.4130.006897
ORF1ab/nsp31429T1429del2aCCa--11B.1.1.440.00241
ORF1ab/nsp31429T1429TacCacT11B.1.1.4820.023256
ORF1ab/nsp31429T1429TacCacT11B.1.1.4870.005587
ORF1ab/nsp31429T1429delACC---11B.1.1.510.001718
ORF1ab/nsp31429T1429IaCcaTc11B.1.1.5190.00004
ORF1ab/nsp31429T1429NaCcaAc11B.1.1.5190.00004
ORF1ab/nsp31429T1429NaCcaAc11B.1.1.540.003021
ORF1ab/nsp31429T1429TacCacT11B.1.1.630.000386
ORF1ab/nsp31429T1429SAccTcc11B.1.1.70.000001
ORF1ab/nsp31429T1429del2aCCa--11B.1.1.70.000001
ORF1ab/nsp31429T1429PAccCcc11B.1.1.70.000001
ORF1ab/nsp31429T1429delACC---11B.1.1.700.000341
ORF1ab/nsp31429T1429TacCacT11B.1.1.950.019608
ORF1ab/nsp31429T1429IaCcaTc11B.1.1040.00369
ORF1ab/nsp31429T1429TacCacT11B.1.110.30.000718
ORF1ab/nsp31429T1429TacCacT11B.1.1260.001276
ORF1ab/nsp31429T1429AAccGcc11B.1.160.120.00641
ORF1ab/nsp31429T1429delACC---11B.1.160.230.004831
ORF1ab/nsp31429T1429delACC---11B.1.160.70.002079
ORF1ab/nsp31429T1429TacCacT11B.1.160.90.007194
ORF1ab/nsp31429T1429NaCcaAc11B.1.1770.000013
ORF1ab/nsp31429T1429delACC---11B.1.177.150.000631
ORF1ab/nsp31429T1429delACC---11B.1.177.160.000664
ORF1ab/nsp31429T1429delACC---11B.1.177.190.001431
ORF1ab/nsp31429T1429delACC---11B.1.177.210.000076
ORF1ab/nsp31429T1429TacCacT11B.1.177.350.000691
ORF1ab/nsp31429T1429delACC---11B.1.177.60.000977
ORF1ab/nsp31429T1429TacCacT11B.1.177.600.000218
ORF1ab/nsp31429T1429delACC---11B.1.177.620.001192
ORF1ab/nsp31429T1429delACC---11B.1.177.680.015152
ORF1ab/nsp31429T1429del1acCac-11B.1.177.70.000165
ORF1ab/nsp31429T1429AAccGcc11B.1.177.70.000165
ORF1ab/nsp31429T1429delACC---11B.1.177.760.002494
ORF1ab/nsp31429T1429delACC---11B.1.177.90.001332
ORF1ab/nsp31429T1429NaCcaAc11B.1.20.000009
ORF1ab/nsp31429T1429TacCacA11B.1.230.006061
ORF1ab/nsp31429T1429TacCacT11B.1.2320.000537
ORF1ab/nsp31429T1429AAccGcc11B.1.2340.000132
ORF1ab/nsp31429T1429IaCcaTc11B.1.2340.000132
ORF1ab/nsp31429T1429IaCcaTc11B.1.2400.000216
ORF1ab/nsp31429T1429TacCacT11B.1.2400.000216
ORF1ab/nsp31429T1429AAccGcc11B.1.2430.00007
ORF1ab/nsp31429T1429IaCcaTc11B.1.2430.00007
ORF1ab/nsp31429T1429delACC---11B.1.2580.000067
ORF1ab/nsp31429T1429delACC---11B.1.258.100.011364
ORF1ab/nsp31429T1429MaCCaTG11B.1.2980.002114
ORF1ab/nsp31429T1429IaCcaTc11B.1.3190.003049
ORF1ab/nsp31429T1429IaCcaTc11B.1.3490.000715
ORF1ab/nsp31429T1429TacCacT11B.1.351.30.000876
ORF1ab/nsp31429T1429delACC---11B.1.36.170.000494
ORF1ab/nsp31429T1429TacCacT11B.1.36.180.00042
ORF1ab/nsp31429T1429NaCcaAc11B.1.36.180.00042
ORF1ab/nsp31429T1429TacCacT11B.1.36.220.001208
ORF1ab/nsp31429T1429delACC---11B.1.36.220.001208
ORF1ab/nsp31429T1429TacCacA11B.1.36.290.000517
ORF1ab/nsp31429T1429delACC---11B.1.36.380.001642
ORF1ab/nsp31429T1429TacCacT11B.1.3690.000285
ORF1ab/nsp31429T1429IaCcaTc11B.1.3690.000285
ORF1ab/nsp31429T1429TacCacA11B.1.4040.001302
ORF1ab/nsp31429T1429delACC---11B.1.4150.014286
ORF1ab/nsp31429T1429delACC---11B.1.416.10.001563
ORF1ab/nsp31429T1429TacCacT11B.1.466.20.000391
ORF1ab/nsp31429T1429NaCcaAc11B.1.4970.000315
ORF1ab/nsp31429T1429TacCacT11B.1.5090.000866
ORF1ab/nsp31429T1429NaCcaAc11B.1.5170.000427
ORF1ab/nsp31429T1429IaCcaTc11B.1.5250.000113
ORF1ab/nsp31429T1429delACC---11B.1.5250.000113
ORF1ab/nsp31429T1429IaCcaTc11B.1.5260.000024
ORF1ab/nsp31429T1429TacCacT11B.1.5260.000024
ORF1ab/nsp31429T1429TacCacT11B.1.5400.009709
ORF1ab/nsp31429T1429IaCcaTc11B.1.5600.00463
ORF1ab/nsp31429T1429delACC---11B.1.5750.000303
ORF1ab/nsp31429T1429TacCacT11B.1.5750.000303
ORF1ab/nsp31429T1429TacCacT11B.1.5950.000261
ORF1ab/nsp31429T1429MaCCaTG11B.1.5950.000261
ORF1ab/nsp31429T1429delACC---11B.1.5960.000087
ORF1ab/nsp31429T1429NaCcaAc11B.1.5960.000087
ORF1ab/nsp31429T1429AAccGcc11B.1.5960.000087
ORF1ab/nsp31429T1429TacCacT11B.1.5980.016949
ORF1ab/nsp31429T1429TacCacT11B.1.6000.005848
ORF1ab/nsp31429T1429IaCcaTc11B.1.6090.000479
ORF1ab/nsp31429T1429del1AcC-cA11B.1.617.20.000004
ORF1ab/nsp31429T1429TacCacT11B.1.6180.004032
ORF1ab/nsp31429T1429TacCacT11B.1.6190.000871
ORF1ab/nsp31429T1429TacCacT11B.1.619.10.000641
ORF1ab/nsp31429T1429delACC---11B.1.6210.000089
ORF1ab/nsp31429T1429delACC---11B.1.621.10.000506
ORF1ab/nsp31429T1429delACC---11B.1.6300.005236
ORF1ab/nsp31429T1429NaCcaAc11B.1.6370.000073
ORF1ab/nsp31429T1429MaCCaTG11B.1.9.50.005682
ORF1ab/nsp31429T1429TacCacT11B.200.023256
ORF1ab/nsp31429T1429delACC---11B.340.013699
ORF1ab/nsp31429T1429IaCcaTc11B.520.010101
ORF1ab/nsp31429T1429TacCacT11B.610.005747
ORF1ab/nsp31429T1429KaCCaAA11C.350.000774
ORF1ab/nsp31429T1429TacCacT11C.36.20.034483
ORF1ab/nsp31429T1429TacCacT11C.370.000116
ORF1ab/nsp31429T1429TacCacA11C.37.10.002618
ORF1ab/nsp31429T1429IaCcaTc11C.80.004464
ORF1ab/nsp31429T1429IaCcaTc11D.20.000075
ORF1ab/nsp31429T1429SAccTcc11D.20.000075
ORF1ab/nsp31429T1429IaCcaTc11N.50.001767
ORF1ab/nsp31429T1429NaCcaAc11P.10.000016
ORF1ab/nsp31429T1429IaCcaTc11P.1.10.000318
ORF1ab/nsp31429T1429TacCacT11P.1.120.000484
ORF1ab/nsp31429T1429delACC---11P.1.150.000232
ORF1ab/nsp31429T1429IaCcaTc11P.1.160.000374
ORF1ab/nsp31429T1429del1aCca-c11P.1.160.000374
ORF1ab/nsp31429T1429TacCacT11P.1.170.000162
ORF1ab/nsp31429T1429NaCcaAc11P.20.000187
ORF1ab/nsp31429T1429AAccGcc11P.20.000187
ORF1ab/nsp31429T1429NaCcaAc11Q.80.000165
ORF1ab/nsp31429T1429TacCacT11R.10.00009
ORF1ab/nsp31429T1429AAccGcc11W.40.001351