CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1427

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31427Y1427YY2245YsyntaCtaT1093109316998-7000
ORF1ab/nsp31427Y1427HY2245HnonsynTacCac38138116998-7000
ORF1ab/nsp31427Y1427delY2245deldelTAC---22422416998-7000
ORF1ab/nsp31427Y1427CY2245CnonsyntActGc32310.968756998-7000
ORF1ab/nsp31427Y1427CY2245CnonsyntACtGT3210.031256998-7000
ORF1ab/nsp31427Y1427NY2245NnonsynTacAac141416998-7000
ORF1ab/nsp31427Y1427FY2245FnonsyntActTc121216998-7000
ORF1ab/nsp31427Y1427XY2245XnonsyntaCtaG1050.56998-7000
ORF1ab/nsp31427Y1427XY2245XnonsyntaCtaA1050.56998-7000
ORF1ab/nsp31427Y1427del1Y2245del1deltaCta-630.56998-7000
ORF1ab/nsp31427Y1427del1Y2245del1delTac-ac620.3333336998-7000
ORF1ab/nsp31427Y1427del1Y2245del1deltAct-c610.1666676998-7000
ORF1ab/nsp31427Y1427SY2245SnonsyntActCc540.86998-7000
ORF1ab/nsp31427Y1427SY2245SnonsyntACtCA510.26998-7000
ORF1ab/nsp31427Y1427QY2245QnonsynTaCCaG3316998-7000
ORF1ab/nsp31427Y1427del2Y2245del2delTAc--c210.56998-7000
ORF1ab/nsp31427Y1427del2Y2245del2deltACt--210.56998-7000
ORF1ab/nsp31427Y1427IY2245InonsynTAcATc1116998-7000
ORF1ab/nsp31427Y1427VY2245VnonsynTACGTA1116998-7000
ORF1ab/nsp31427Y1427DY2245DnonsynTacGac1116998-7000
ORF1ab/nsp31427Y1427KY2245KnonsynTaCAaA1116998-7000

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31427Y1427YtaCtaT10931093All0.000209
ORF1ab/nsp31427Y1427YtaCtaT406406AY.40.000632
ORF1ab/nsp31427Y1427HTacCac381381All0.000073
ORF1ab/nsp31427Y1427delTAC---224224All0.000043
ORF1ab/nsp31427Y1427HTacCac186186AY.40.000289
ORF1ab/nsp31427Y1427YtaCtaT135135B.1.3510.004013
ORF1ab/nsp31427Y1427delTAC---8585B.1.1.70.000076
ORF1ab/nsp31427Y1427YtaCtaT8383AY.430.000368
ORF1ab/nsp31427Y1427YtaCtaT7070B.1.1.70.000063
ORF1ab/nsp31427Y1427YtaCtaT5454B.1.1.3470.981818
ORF1ab/nsp31427Y1427CtActGc3132All0.000006
ORF1ab/nsp31427Y1427CtACtGT132All0
ORF1ab/nsp31427Y1427YtaCtaT3232AY.9.20.001175
ORF1ab/nsp31427Y1427HTacCac2828B.1.1.70.000025
ORF1ab/nsp31427Y1427YtaCtaT2727B.1.617.20.000102
ORF1ab/nsp31427Y1427YtaCtaT2222B.1.596.10.205607
ORF1ab/nsp31427Y1427HTacCac2121B.1.617.20.000079
ORF1ab/nsp31427Y1427YtaCtaT1818AY.1030.000112
ORF1ab/nsp31427Y1427HTacCac1818P.10.000284
ORF1ab/nsp31427Y1427delTAC---1616AY.40.000025
ORF1ab/nsp31427Y1427delTAC---1616B.1.1770.000211
ORF1ab/nsp31427Y1427NTacAac1414All0.000003
ORF1ab/nsp31427Y1427YtaCtaT1414B.10.000128
ORF1ab/nsp31427Y1427HTacCac1313B.1.4290.000306
ORF1ab/nsp31427Y1427FtActTc1212All0.000002
ORF1ab/nsp31427Y1427delTAC---1111B.10.000101
ORF1ab/nsp31427Y1427XtaCtaA510All0.000001
ORF1ab/nsp31427Y1427XtaCtaG510All0.000001
ORF1ab/nsp31427Y1427YtaCtaT1010B.1.177.40.002111
ORF1ab/nsp31427Y1427NTacAac99B.1.177.70.001484
ORF1ab/nsp31427Y1427HTacCac99Q.30.001305
ORF1ab/nsp31427Y1427YtaCtaT88AY.250.000048
ORF1ab/nsp31427Y1427YtaCtaT88AY.360.001186
ORF1ab/nsp31427Y1427FtActTc88AY.40.000012
ORF1ab/nsp31427Y1427YtaCtaT88AY.46.60.000578
ORF1ab/nsp31427Y1427HTacCac88B.10.000073
ORF1ab/nsp31427Y1427YtaCtaT88B.1.10.000145
ORF1ab/nsp31427Y1427YtaCtaT88B.1.1.1700.009975
ORF1ab/nsp31427Y1427CtActGc88B.1.177.170.006568
ORF1ab/nsp31427Y1427YtaCtaT77AY.1000.000322
ORF1ab/nsp31427Y1427YtaCtaT77AY.390.000173
ORF1ab/nsp31427Y1427delTAC---77B.1.10.000127
ORF1ab/nsp31427Y1427delTAC---660.333333
ORF1ab/nsp31427Y1427del1taCta-36All0.000001
ORF1ab/nsp31427Y1427del1Tac-ac26All0
ORF1ab/nsp31427Y1427del1tAct-c16All0
ORF1ab/nsp31427Y1427YtaCtaT66AY.260.00017
ORF1ab/nsp31427Y1427YtaCtaT66AY.30.00006
ORF1ab/nsp31427Y1427YtaCtaT66AY.330.000401
ORF1ab/nsp31427Y1427delTAC---66AY.430.000027
ORF1ab/nsp31427Y1427HTacCac66B.1.10.000109
ORF1ab/nsp31427Y1427HTacCac66B.1.2580.000399
ORF1ab/nsp31427Y1427YtaCtaT66P.1.10.001906
ORF1ab/nsp31427Y1427StActCc45All0.000001
ORF1ab/nsp31427Y1427StACtCA15All0
ORF1ab/nsp31427Y1427HTacCac55AY.1030.000031
ORF1ab/nsp31427Y1427HTacCac55AY.250.00003
ORF1ab/nsp31427Y1427HTacCac55AY.3.10.000426
ORF1ab/nsp31427Y1427CtActGc55AY.360.000741
ORF1ab/nsp31427Y1427delTAC---55AY.4.50.000537
ORF1ab/nsp31427Y1427YtaCtaT55AY.440.00003
ORF1ab/nsp31427Y1427YtaCtaT55B.1.1.2140.000277
ORF1ab/nsp31427Y1427YtaCtaT55B.1.1.3180.001509
ORF1ab/nsp31427Y1427CtActGc55B.1.1.70.000004
ORF1ab/nsp31427Y1427YtaCtaT55B.1.1600.000156
ORF1ab/nsp31427Y1427HTacCac55B.1.20.000044
ORF1ab/nsp31427Y1427YtaCtaT55B.1.2430.000348
ORF1ab/nsp31427Y1427HTacCac55B.1.4270.000252
ORF1ab/nsp31427Y1427YtaCtaT55R.10.00045
ORF1ab/nsp31427Y1427YtaCtaT44AY.290.000063
ORF1ab/nsp31427Y1427HTacCac44AY.350.000932
ORF1ab/nsp31427Y1427YtaCtaT44AY.39.10.000158
ORF1ab/nsp31427Y1427YtaCtaT44B.1.360.000584
ORF1ab/nsp31427Y1427YtaCtaT44B.1.4290.000094
ORF1ab/nsp31427Y1427HTacCac44B.1.4620.028986
ORF1ab/nsp31427Y1427YtaCtaT44B.1.466.20.001565
ORF1ab/nsp31427Y1427YtaCtaT44B.1.617.10.000516
ORF1ab/nsp31427Y1427HTacCac44D.20.0003
ORF1ab/nsp31427Y1427YtaCtaT33A.280.007937
ORF1ab/nsp31427Y1427QTaCCaG33All0.000001
ORF1ab/nsp31427Y1427HTacCac33AY.1000.000138
ORF1ab/nsp31427Y1427YtaCtaT33AY.1130.000427
ORF1ab/nsp31427Y1427YtaCtaT33AY.1200.000112
ORF1ab/nsp31427Y1427YtaCtaT33AY.200.000117
ORF1ab/nsp31427Y1427HTacCac33AY.390.000074
ORF1ab/nsp31427Y1427HTacCac33AY.430.000013
ORF1ab/nsp31427Y1427HTacCac33AY.470.000093
ORF1ab/nsp31427Y1427HTacCac33AY.9.20.00011
ORF1ab/nsp31427Y1427YtaCtaT33AY.980.000237
ORF1ab/nsp31427Y1427YtaCtaT33AY.99.20.000276
ORF1ab/nsp31427Y1427YtaCtaT33B.1.1.390.001529
ORF1ab/nsp31427Y1427del1taCta-13B.1.1.70.000001
ORF1ab/nsp31427Y1427del1Tac-ac13B.1.1.70.000001
ORF1ab/nsp31427Y1427del1tAct-c13B.1.1.70.000001
ORF1ab/nsp31427Y1427delTAC---33B.1.177.40.000633
ORF1ab/nsp31427Y1427delTAC---33B.1.20.000026
ORF1ab/nsp31427Y1427YtaCtaT33B.1.5260.000071
ORF1ab/nsp31427Y1427delTAC---33B.1.617.20.000011
ORF1ab/nsp31427Y1427CtActGc23B.1.617.20.000008
ORF1ab/nsp31427Y1427CtACtGT13B.1.617.20.000004
ORF1ab/nsp31427Y1427YtaCtaT33P.10.000047
ORF1ab/nsp31427Y1427delTAC---33U.30.011583
ORF1ab/nsp31427Y1427FtActTc22A.2.40.006734
ORF1ab/nsp31427Y1427del2tACt--12All0
ORF1ab/nsp31427Y1427del2TAc--c12All0
ORF1ab/nsp31427Y1427YtaCtaT22AY.1020.000053
ORF1ab/nsp31427Y1427delTAC---22AY.1030.000012
ORF1ab/nsp31427Y1427YtaCtaT22AY.1070.000932
ORF1ab/nsp31427Y1427CtActGc22AY.230.000139
ORF1ab/nsp31427Y1427HTacCac22AY.30.00002
ORF1ab/nsp31427Y1427YtaCtaT22AY.320.001065
ORF1ab/nsp31427Y1427YtaCtaT22AY.340.000194
ORF1ab/nsp31427Y1427YtaCtaT22AY.350.000466
ORF1ab/nsp31427Y1427HTacCac22AY.39.10.000079
ORF1ab/nsp31427Y1427HTacCac22AY.46.50.000397
ORF1ab/nsp31427Y1427delTAC---22AY.50.000041
ORF1ab/nsp31427Y1427HTacCac22AY.540.000191
ORF1ab/nsp31427Y1427YtaCtaT22AY.580.001815
ORF1ab/nsp31427Y1427HTacCac22AY.610.00021
ORF1ab/nsp31427Y1427YtaCtaT22AY.610.00021
ORF1ab/nsp31427Y1427CtActGc22B.10.000018
ORF1ab/nsp31427Y1427StActCc22B.1.10.000036
ORF1ab/nsp31427Y1427YtaCtaT22B.1.1.10.000653
ORF1ab/nsp31427Y1427HTacCac22B.1.1.330.000842
ORF1ab/nsp31427Y1427YtaCtaT22B.1.1.3370.007194
ORF1ab/nsp31427Y1427HTacCac22B.1.1.390.001019
ORF1ab/nsp31427Y1427QTaCCaG22B.1.1.70.000002
ORF1ab/nsp31427Y1427del2TAc--c12B.1.1.70.000001
ORF1ab/nsp31427Y1427del2tACt--12B.1.1.70.000001
ORF1ab/nsp31427Y1427delTAC---22B.1.177.570.000562
ORF1ab/nsp31427Y1427HTacCac22B.1.177.810.000379
ORF1ab/nsp31427Y1427YtaCtaT22B.1.20.000018
ORF1ab/nsp31427Y1427delTAC---22B.1.2210.000142
ORF1ab/nsp31427Y1427YtaCtaT22B.1.3050.004301
ORF1ab/nsp31427Y1427HTacCac22B.1.360.000292
ORF1ab/nsp31427Y1427CtActGc22B.1.466.20.000782
ORF1ab/nsp31427Y1427delTAC---22B.1.5170.000854
ORF1ab/nsp31427Y1427XtaCtaG22B.1.617.10.000258
ORF1ab/nsp31427Y1427delTAC---22P.10.000032
ORF1ab/nsp31427Y1427delTAC---11A0.000387
ORF1ab/nsp31427Y1427FtActTc11A.20.000662
ORF1ab/nsp31427Y1427StActCc11A.20.000662
ORF1ab/nsp31427Y1427KTaCAaA11A.2.40.003367
ORF1ab/nsp31427Y1427NTacAac11A.2.40.003367
ORF1ab/nsp31427Y1427XtaCtaA11A.2.40.003367
ORF1ab/nsp31427Y1427HTacCac11A.2.40.003367
ORF1ab/nsp31427Y1427delTAC---11A.2.40.003367
ORF1ab/nsp31427Y1427YtaCtaT11A.2.50.000499
ORF1ab/nsp31427Y1427delTAC---11A.280.002646
ORF1ab/nsp31427Y1427HTacCac11A.60.005128
ORF1ab/nsp31427Y1427XtaCtaG11A.60.005128
ORF1ab/nsp31427Y1427QTaCCaG11A.60.005128
ORF1ab/nsp31427Y1427delTAC---11AD.20.000219
ORF1ab/nsp31427Y1427XtaCtaG11AE.30.032258
ORF1ab/nsp31427Y1427VTACGTA11All0
ORF1ab/nsp31427Y1427DTacGac11All0
ORF1ab/nsp31427Y1427KTaCAaA11All0
ORF1ab/nsp31427Y1427ITAcATc11All0
ORF1ab/nsp31427Y1427StACtCA11AY.1030.000006
ORF1ab/nsp31427Y1427YtaCtaT11AY.1180.000063
ORF1ab/nsp31427Y1427HTacCac11AY.1190.000035
ORF1ab/nsp31427Y1427YtaCtaT11AY.1190.000035
ORF1ab/nsp31427Y1427delTAC---11AY.1200.000037
ORF1ab/nsp31427Y1427YtaCtaT11AY.1210.000135
ORF1ab/nsp31427Y1427HTacCac11AY.140.000088
ORF1ab/nsp31427Y1427HTacCac11AY.200.000039
ORF1ab/nsp31427Y1427YtaCtaT11AY.230.00007
ORF1ab/nsp31427Y1427HTacCac11AY.230.00007
ORF1ab/nsp31427Y1427HTacCac11AY.23.10.000417
ORF1ab/nsp31427Y1427delTAC---11AY.240.000431
ORF1ab/nsp31427Y1427delTAC---11AY.250.000006
ORF1ab/nsp31427Y1427YtaCtaT11AY.270.000065
ORF1ab/nsp31427Y1427del1taCta-11AY.30.00001
ORF1ab/nsp31427Y1427YtaCtaT11AY.3.10.000085
ORF1ab/nsp31427Y1427delTAC---11AY.360.000148
ORF1ab/nsp31427Y1427YtaCtaT11AY.370.000316
ORF1ab/nsp31427Y1427CtActGc11AY.40.000002
ORF1ab/nsp31427Y1427del1Tac-ac11AY.40.000002
ORF1ab/nsp31427Y1427YtaCtaT11AY.4.20.000022
ORF1ab/nsp31427Y1427HTacCac11AY.400.000964
ORF1ab/nsp31427Y1427HTacCac11AY.420.00004
ORF1ab/nsp31427Y1427YtaCtaT11AY.420.00004
ORF1ab/nsp31427Y1427delTAC---11AY.420.00004
ORF1ab/nsp31427Y1427YtaCtaT11AY.46.10.001027
ORF1ab/nsp31427Y1427HTacCac11AY.50.000021
ORF1ab/nsp31427Y1427CtActGc11AY.5.40.000277
ORF1ab/nsp31427Y1427YtaCtaT11AY.530.000288
ORF1ab/nsp31427Y1427delTAC---11AY.600.000938
ORF1ab/nsp31427Y1427delTAC---11AY.610.000105
ORF1ab/nsp31427Y1427delTAC---11AY.70.000196
ORF1ab/nsp31427Y1427YtaCtaT11AY.7.10.000113
ORF1ab/nsp31427Y1427delTAC---11AY.720.001361
ORF1ab/nsp31427Y1427delTAC---11AY.730.000665
ORF1ab/nsp31427Y1427YtaCtaT11AY.750.000056
ORF1ab/nsp31427Y1427delTAC---11AY.9.20.000037
ORF1ab/nsp31427Y1427delTAC---11AY.99.10.001553
ORF1ab/nsp31427Y1427delTAC---11B0.000128
ORF1ab/nsp31427Y1427XtaCtaA11B.10.000009
ORF1ab/nsp31427Y1427XtaCtaA11B.1.10.000018
ORF1ab/nsp31427Y1427YtaCtaT11B.1.1.100.001115
ORF1ab/nsp31427Y1427YtaCtaT11B.1.1.1170.009709
ORF1ab/nsp31427Y1427delTAC---11B.1.1.2360.006897
ORF1ab/nsp31427Y1427YtaCtaT11B.1.1.280.000311
ORF1ab/nsp31427Y1427YtaCtaT11B.1.1.3010.001179
ORF1ab/nsp31427Y1427YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp31427Y1427delTAC---11B.1.1.3150.008475
ORF1ab/nsp31427Y1427YtaCtaT11B.1.1.330.000421
ORF1ab/nsp31427Y1427YtaCtaT11B.1.1.3480.000796
ORF1ab/nsp31427Y1427HTacCac11B.1.1.3480.000796
ORF1ab/nsp31427Y1427XtaCtaA11B.1.1.3970.002252
ORF1ab/nsp31427Y1427delTAC---11B.1.1.4090.002833
ORF1ab/nsp31427Y1427HTacCac11B.1.1.4340.000349
ORF1ab/nsp31427Y1427delTAC---11B.1.1.510.001718
ORF1ab/nsp31427Y1427YtaCtaT11B.1.1.5190.00004
ORF1ab/nsp31427Y1427HTacCac11B.1.1.630.000386
ORF1ab/nsp31427Y1427NTacAac11B.1.1.70.000001
ORF1ab/nsp31427Y1427XtaCtaG11B.1.1.70.000001
ORF1ab/nsp31427Y1427ITAcATc11B.1.1.70.000001
ORF1ab/nsp31427Y1427delTAC---11B.1.1.700.000341
ORF1ab/nsp31427Y1427NTacAac11B.1.1390.000733
ORF1ab/nsp31427Y1427DTacGac11B.1.1570.002985
ORF1ab/nsp31427Y1427delTAC---11B.1.160.230.004831
ORF1ab/nsp31427Y1427delTAC---11B.1.160.70.002079
ORF1ab/nsp31427Y1427YtaCtaT11B.1.1770.000013
ORF1ab/nsp31427Y1427delTAC---11B.1.177.150.000631
ORF1ab/nsp31427Y1427delTAC---11B.1.177.160.000664
ORF1ab/nsp31427Y1427delTAC---11B.1.177.190.001431
ORF1ab/nsp31427Y1427YtaCtaT11B.1.177.210.000076
ORF1ab/nsp31427Y1427delTAC---11B.1.177.210.000076
ORF1ab/nsp31427Y1427delTAC---11B.1.177.60.000977
ORF1ab/nsp31427Y1427delTAC---11B.1.177.620.001192
ORF1ab/nsp31427Y1427HTacCac11B.1.177.620.001192
ORF1ab/nsp31427Y1427delTAC---11B.1.177.680.015152
ORF1ab/nsp31427Y1427YtaCtaT11B.1.177.70.000165
ORF1ab/nsp31427Y1427delTAC---11B.1.177.760.002494
ORF1ab/nsp31427Y1427XtaCtaA11B.1.177.810.000189
ORF1ab/nsp31427Y1427delTAC---11B.1.177.870.000728
ORF1ab/nsp31427Y1427delTAC---11B.1.177.90.001332
ORF1ab/nsp31427Y1427HTacCac11B.1.2210.000071
ORF1ab/nsp31427Y1427delTAC---11B.1.2580.000067
ORF1ab/nsp31427Y1427delTAC---11B.1.258.100.011364
ORF1ab/nsp31427Y1427delTAC---11B.1.36.220.001208
ORF1ab/nsp31427Y1427YtaCtaT11B.1.36.290.000517
ORF1ab/nsp31427Y1427delTAC---11B.1.36.380.001642
ORF1ab/nsp31427Y1427YtaCtaT11B.1.3750.00082
ORF1ab/nsp31427Y1427delTAC---11B.1.4150.014286
ORF1ab/nsp31427Y1427delTAC---11B.1.416.10.001563
ORF1ab/nsp31427Y1427CtActGc11B.1.4290.000024
ORF1ab/nsp31427Y1427YtaCtaT11B.1.4970.000315
ORF1ab/nsp31427Y1427YtaCtaT11B.1.5170.000427
ORF1ab/nsp31427Y1427NTacAac11B.1.5240.001406
ORF1ab/nsp31427Y1427delTAC---11B.1.5250.000113
ORF1ab/nsp31427Y1427YtaCtaT11B.1.5250.000113
ORF1ab/nsp31427Y1427YtaCtaT11B.1.5270.003704
ORF1ab/nsp31427Y1427YtaCtaT11B.1.5610.000397
ORF1ab/nsp31427Y1427delTAC---11B.1.5750.000303
ORF1ab/nsp31427Y1427YtaCtaT11B.1.5820.000491
ORF1ab/nsp31427Y1427delTAC---11B.1.5880.00091
ORF1ab/nsp31427Y1427VTACGTA11B.1.5960.000087
ORF1ab/nsp31427Y1427delTAC---11B.1.5960.000087
ORF1ab/nsp31427Y1427del1taCta-11B.1.617.10.000129
ORF1ab/nsp31427Y1427delTAC---11B.1.6210.000089
ORF1ab/nsp31427Y1427YtaCtaT11B.1.6210.000089
ORF1ab/nsp31427Y1427YtaCtaT11B.1.621.10.000506
ORF1ab/nsp31427Y1427delTAC---11B.1.621.10.000506
ORF1ab/nsp31427Y1427YtaCtaT11B.1.6280.000352
ORF1ab/nsp31427Y1427HTacCac11B.1.6280.000352
ORF1ab/nsp31427Y1427delTAC---11B.1.6300.005236
ORF1ab/nsp31427Y1427YtaCtaT11B.1.6370.000073
ORF1ab/nsp31427Y1427YtaCtaT11B.1.780.008547
ORF1ab/nsp31427Y1427YtaCtaT11C.230.005814
ORF1ab/nsp31427Y1427NTacAac11C.350.000774
ORF1ab/nsp31427Y1427FtActTc11C.36.30.000567
ORF1ab/nsp31427Y1427YtaCtaT11C.370.000116
ORF1ab/nsp31427Y1427StActCc11D.20.000075
ORF1ab/nsp31427Y1427CtActGc11P.10.000016
ORF1ab/nsp31427Y1427YtaCtaT11P.1.120.000484
ORF1ab/nsp31427Y1427delTAC---11P.1.150.000232
ORF1ab/nsp31427Y1427CtActGc11Q.10.000126