CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1427 | Y1427Y | Y2245Y | syn | taC | taT | 1093 | 1093 | 1 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427H | Y2245H | nonsyn | Tac | Cac | 381 | 381 | 1 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427del | Y2245del | del | TAC | --- | 224 | 224 | 1 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427C | Y2245C | nonsyn | tAc | tGc | 32 | 31 | 0.96875 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427C | Y2245C | nonsyn | tAC | tGT | 32 | 1 | 0.03125 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427N | Y2245N | nonsyn | Tac | Aac | 14 | 14 | 1 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427F | Y2245F | nonsyn | tAc | tTc | 12 | 12 | 1 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427X | Y2245X | nonsyn | taC | taG | 10 | 5 | 0.5 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427X | Y2245X | nonsyn | taC | taA | 10 | 5 | 0.5 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427del1 | Y2245del1 | del | taC | ta- | 6 | 3 | 0.5 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427del1 | Y2245del1 | del | Tac | -ac | 6 | 2 | 0.333333 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427del1 | Y2245del1 | del | tAc | t-c | 6 | 1 | 0.166667 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427S | Y2245S | nonsyn | tAc | tCc | 5 | 4 | 0.8 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427S | Y2245S | nonsyn | tAC | tCA | 5 | 1 | 0.2 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427Q | Y2245Q | nonsyn | TaC | CaG | 3 | 3 | 1 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427del2 | Y2245del2 | del | TAc | --c | 2 | 1 | 0.5 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427del2 | Y2245del2 | del | tAC | t-- | 2 | 1 | 0.5 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427I | Y2245I | nonsyn | TAc | ATc | 1 | 1 | 1 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427V | Y2245V | nonsyn | TAC | GTA | 1 | 1 | 1 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427D | Y2245D | nonsyn | Tac | Gac | 1 | 1 | 1 | 6998-7000 |
ORF1ab/nsp3 | 1427 | Y1427K | Y2245K | nonsyn | TaC | AaA | 1 | 1 | 1 | 6998-7000 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1093 | 1093 | All | 0.000209 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 406 | 406 | AY.4 | 0.000632 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 381 | 381 | All | 0.000073 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 224 | 224 | All | 0.000043 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 186 | 186 | AY.4 | 0.000289 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 135 | 135 | B.1.351 | 0.004013 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 85 | 85 | B.1.1.7 | 0.000076 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 83 | 83 | AY.43 | 0.000368 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 70 | 70 | B.1.1.7 | 0.000063 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 54 | 54 | B.1.1.347 | 0.981818 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 31 | 32 | All | 0.000006 |
ORF1ab/nsp3 | 1427 | Y1427C | tAC | tGT | 1 | 32 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 32 | 32 | AY.9.2 | 0.001175 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 22 | 22 | B.1.596.1 | 0.205607 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp3 | 1427 | Y1427N | Tac | Aac | 14 | 14 | All | 0.000003 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp3 | 1427 | Y1427F | tAc | tTc | 12 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taA | 5 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taG | 5 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 10 | 10 | B.1.177.4 | 0.002111 |
ORF1ab/nsp3 | 1427 | Y1427N | Tac | Aac | 9 | 9 | B.1.177.7 | 0.001484 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 9 | 9 | Q.3 | 0.001305 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp3 | 1427 | Y1427F | tAc | tTc | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 8 | 8 | B.1.1.170 | 0.009975 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 8 | 8 | B.1.177.17 | 0.006568 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp3 | 1427 | Y1427del1 | taC | ta- | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427del1 | Tac | -ac | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427del1 | tAc | t-c | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 6 | 6 | P.1.1 | 0.001906 |
ORF1ab/nsp3 | 1427 | Y1427S | tAc | tCc | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427S | tAC | tCA | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 4 | 4 | B.1.462 | 0.028986 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 3 | 3 | A.28 | 0.007937 |
ORF1ab/nsp3 | 1427 | Y1427Q | TaC | CaG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 1427 | Y1427del1 | taC | ta- | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427del1 | Tac | -ac | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427del1 | tAc | t-c | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1427 | Y1427C | tAC | tGT | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 3 | 3 | U.3 | 0.011583 |
ORF1ab/nsp3 | 1427 | Y1427F | tAc | tTc | 2 | 2 | A.2.4 | 0.006734 |
ORF1ab/nsp3 | 1427 | Y1427del2 | tAC | t-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427del2 | TAc | --c | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1427 | Y1427S | tAc | tCc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1427 | Y1427Q | TaC | CaG | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1427 | Y1427del2 | TAc | --c | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427del2 | tAC | t-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taG | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1427 | Y1427F | tAc | tTc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1427 | Y1427S | tAc | tCc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1427 | Y1427K | TaC | AaA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1427 | Y1427N | Tac | Aac | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taG | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 1427 | Y1427Q | TaC | CaG | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taG | 1 | 1 | AE.3 | 0.032258 |
ORF1ab/nsp3 | 1427 | Y1427V | TAC | GTA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427D | Tac | Gac | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427K | TaC | AaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427I | TAc | ATc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1427 | Y1427S | tAC | tCA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1427 | Y1427del1 | taC | ta- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1427 | Y1427del1 | Tac | -ac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taA | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1427 | Y1427N | Tac | Aac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427I | TAc | ATc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1427 | Y1427N | Tac | Aac | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1427 | Y1427D | Tac | Gac | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp3 | 1427 | Y1427X | taC | taA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1427 | Y1427N | Tac | Aac | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1427 | Y1427V | TAC | GTA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1427 | Y1427del1 | taC | ta- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1427 | Y1427H | Tac | Cac | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp3 | 1427 | Y1427N | Tac | Aac | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1427 | Y1427F | tAc | tTc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1427 | Y1427S | tAc | tCc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1427 | Y1427Y | taC | taT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1427 | Y1427del | TAC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1427 | Y1427C | tAc | tGc | 1 | 1 | Q.1 | 0.000126 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|