CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1424 | S1424F | S2242F | nonsyn | tCt | tTt | 10474 | 10472 | 0.999809 | 6989-6991 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 10472 | 10474 | All | 0.002003 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1860 | 1860 | AY.4 | 0.002895 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1524 | 1525 | B.1.1.7 | 0.001364 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 873 | 873 | B.1.1.416 | 0.790045 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 516 | 516 | B.1.1.284 | 0.055418 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 445 | 445 | B.1.1.25 | 0.252985 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 385 | 385 | B.1 | 0.003526 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 310 | 310 | B.1.427 | 0.015654 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 296 | 296 | B.1.617.2 | 0.001115 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 272 | 272 | AY.120 | 0.010113 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 268 | 268 | AY.25 | 0.001612 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 259 | 259 | AY.44 | 0.001576 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 247 | 247 | B.1.1 | 0.004481 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 191 | 191 | AY.3 | 0.0019 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 151 | 151 | B.1.2 | 0.00133 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 136 | 136 | B.1.395 | 0.957746 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 117 | 117 | B.1.35 | 0.991525 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 116 | 116 | AY.47 | 0.003608 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 115 | 115 | AY.24 | 0.049569 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 108 | 108 | B.29 | 0.378947 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 95 | 95 | AY.103 | 0.00059 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 88 | 88 | AY.26 | 0.002491 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 84 | 84 | B.1.177.81 | 0.015903 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 82 | 82 | AY.43 | 0.000363 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 71 | 71 | B.1.177 | 0.000935 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 70 | 70 | B.1.177.86 | 0.012842 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 70 | 70 | P.1 | 0.001103 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 63 | 63 | B.1.351.2 | 0.019062 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 61 | 61 | AY.102 | 0.001617 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 61 | 61 | AY.39 | 0.001507 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 55 | 55 | AY.16.1 | 0.025846 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 50 | 50 | AY.118 | 0.003132 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 50 | 50 | B.1.139 | 0.036657 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 45 | 45 | B.1.177.83 | 0.066667 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 45 | 45 | B.1.621.1 | 0.022762 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 43 | 43 | B.1.526 | 0.001011 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 41 | 41 | B.1.429 | 0.000965 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 38 | 38 | AY.9.2 | 0.001396 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 36 | 36 | AY.9 | 0.002433 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 35 | 35 | AY.4.2 | 0.000759 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 35 | 35 | B.1.575 | 0.010619 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 30 | 30 | B.1.351 | 0.000892 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 29 | 29 | P.1.15 | 0.006738 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 27 | 27 | AY.5 | 0.000558 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 22 | 22 | AY.61 | 0.002305 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 22 | 22 | B.1.1.519 | 0.000874 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 22 | 22 | B.1.241 | 0.017857 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 21 | 21 | B.1.258.17 | 0.002183 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 20 | 20 | P.2 | 0.003733 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 19 | 19 | AY.100 | 0.000874 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 19 | 19 | AY.20 | 0.000738 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 19 | 19 | B.1.177.20 | 0.028832 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 19 | 19 | B.1.636 | 0.127517 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 18 | 18 | AY.9.1 | 0.001507 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 18 | 18 | B.1.561 | 0.007146 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 17 | 17 | AY.39.1 | 0.000673 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 15 | 15 | AY.14 | 0.00132 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 15 | 15 | AY.33 | 0.001002 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 14 | 14 | B.1.1.176 | 0.006151 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 13 | 13 | AY.32 | 0.006922 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 12 | 12 | AY.75 | 0.000672 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 12 | 12 | B.1.572 | 0.3 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 11 | 11 | AY.42 | 0.000443 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 11 | 11 | B.1.221 | 0.000781 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 11 | 11 | B.1.36 | 0.001605 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 10 | 10 | AY.29.1 | 0.002205 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 10 | 10 | B.1.177.8 | 0.007524 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 10 | 10 | B.1.177.87 | 0.007278 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 8 | 8 | AY.30 | 0.003166 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 8 | 8 | AY.54 | 0.000763 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 8 | 8 | B.1.1.306 | 0.003507 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 8 | 8 | B.1.206 | 0.006525 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 8 | 8 | B.1.632 | 0.053691 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 8 | 8 | P.1.17 | 0.001294 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 7 | 7 | AY.108 | 0.007718 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 7 | 7 | B.1.1.189 | 0.01059 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 7 | 7 | B.1.1.63 | 0.002701 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | A | 0.002322 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | AY.2 | 0.002137 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | B.1.1.419 | 0.044444 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | P.6 | 0.018868 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 6 | 6 | Q.4 | 0.002729 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 5 | 5 | AY.55 | 0.004587 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 5 | 5 | B.1.1.216 | 0.004452 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 5 | 5 | B.1.177.62 | 0.005959 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | AY.46.3 | 0.003735 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | AY.99 | 0.004197 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | B.1.371 | 0.004489 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | B.1.587 | 0.00759 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | B.1.627 | 0.008081 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 4 | 4 | N.5 | 0.007067 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | AY.120.2 | 0.003856 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.1.48 | 0.008621 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.1.521 | 0.016043 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.146 | 0.012712 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.177.79 | 0.007026 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.36.34 | 0.06383 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.1.522 | 0.034483 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.223 | 0.005556 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.503 | 0.004975 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AD.1 | 0.004115 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.359 | 0.027778 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.388 | 0.045455 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.500 | 0.02 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.82 | 0.038462 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.160.25 | 0.011111 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.258.19 | 0.007092 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1424 | S1424F | tCt | tTt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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