CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1424

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31424S1424FS2242FnonsyntCttTt10474104720.9998096989-6991
ORF1ab/nsp31424S1424FS2242FnonsyntCTtTC1047420.0001909496989-6991
ORF1ab/nsp31424S1424SS2242SsyntcTtcC5074890.9644976989-6991
ORF1ab/nsp31424S1424SS2242SsyntcTtcG507140.02761346989-6991
ORF1ab/nsp31424S1424SS2242SsyntcTtcA50740.007889556989-6991
ORF1ab/nsp31424S1424delS2242deldelTCT---22922916989-6991
ORF1ab/nsp31424S1424PS2242PnonsynTctCct11311316989-6991
ORF1ab/nsp31424S1424CS2242CnonsyntCttGt11211216989-6991
ORF1ab/nsp31424S1424YS2242YnonsyntCttAt11011016989-6991
ORF1ab/nsp31424S1424AS2242AnonsynTctGct585816989-6991
ORF1ab/nsp31424S1424TS2242TnonsynTctAct35330.9428576989-6991
ORF1ab/nsp31424S1424TS2242TnonsynTcTAcG3520.05714296989-6991
ORF1ab/nsp31424S1424del1S2242del1deltcTtc-750.7142866989-6991
ORF1ab/nsp31424S1424del1S2242del1deltCtt-t720.2857146989-6991
ORF1ab/nsp31424S1424del2S2242del2deltCTt--430.756989-6991
ORF1ab/nsp31424S1424del2S2242del2delTCt--t410.256989-6991
ORF1ab/nsp31424S1424XS2242XnonsyntCTtAA320.6666676989-6991
ORF1ab/nsp31424S1424XS2242XnonsyntCTtAG310.3333336989-6991
ORF1ab/nsp31424S1424KS2242KnonsynTCTAAG210.56989-6991
ORF1ab/nsp31424S1424KS2242KnonsynTCTAAA210.56989-6991
ORF1ab/nsp31424S1424VS2242VnonsynTCtGTt1116989-6991
ORF1ab/nsp31424S1424NS2242NnonsynTCtAAt1116989-6991
ORF1ab/nsp31424S1424IS2242InonsynTCtATt1116989-6991

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31424S1424FtCttTt1047210474All0.002003
ORF1ab/nsp31424S1424FtCTtTC210474All0
ORF1ab/nsp31424S1424FtCttTt18601860AY.40.002895
ORF1ab/nsp31424S1424FtCttTt15241525B.1.1.70.001364
ORF1ab/nsp31424S1424FtCTtTC11525B.1.1.70.000001
ORF1ab/nsp31424S1424FtCttTt873873B.1.1.4160.790045
ORF1ab/nsp31424S1424FtCttTt516516B.1.1.2840.055418
ORF1ab/nsp31424S1424StcTtcC489507All0.000094
ORF1ab/nsp31424S1424StcTtcG14507All0.000003
ORF1ab/nsp31424S1424StcTtcA4507All0.000001
ORF1ab/nsp31424S1424FtCttTt445445B.1.1.250.252985
ORF1ab/nsp31424S1424StcTtcC414415B.1.1.70.000371
ORF1ab/nsp31424S1424StcTtcA1415B.1.1.70.000001
ORF1ab/nsp31424S1424FtCttTt385385B.10.003526
ORF1ab/nsp31424S1424FtCttTt310310B.1.4270.015654
ORF1ab/nsp31424S1424FtCttTt296296B.1.617.20.001115
ORF1ab/nsp31424S1424FtCttTt272272AY.1200.010113
ORF1ab/nsp31424S1424FtCttTt268268AY.250.001612
ORF1ab/nsp31424S1424FtCttTt259259AY.440.001576
ORF1ab/nsp31424S1424FtCttTt247247B.1.10.004481
ORF1ab/nsp31424S1424delTCT---229229All0.000044
ORF1ab/nsp31424S1424FtCttTt191191AY.30.0019
ORF1ab/nsp31424S1424FtCttTt151151B.1.20.00133
ORF1ab/nsp31424S1424FtCttTt136136B.1.3950.957746
ORF1ab/nsp31424S1424FtCttTt117117B.1.350.991525
ORF1ab/nsp31424S1424FtCttTt116116AY.470.003608
ORF1ab/nsp31424S1424FtCttTt115115AY.240.049569
ORF1ab/nsp31424S1424PTctCct113113All0.000022
ORF1ab/nsp31424S1424CtCttGt112112All0.000021
ORF1ab/nsp31424S1424YtCttAt110110All0.000021
ORF1ab/nsp31424S1424FtCttTt108108B.290.378947
ORF1ab/nsp31424S1424FtCttTt9595AY.1030.00059
ORF1ab/nsp31424S1424FtCttTt8888AY.260.002491
ORF1ab/nsp31424S1424delTCT---8888B.1.1.70.000079
ORF1ab/nsp31424S1424FtCttTt8484B.1.177.810.015903
ORF1ab/nsp31424S1424FtCttTt8282AY.430.000363
ORF1ab/nsp31424S1424FtCttTt7171B.1.1770.000935
ORF1ab/nsp31424S1424FtCttTt7070B.1.177.860.012842
ORF1ab/nsp31424S1424FtCttTt7070P.10.001103
ORF1ab/nsp31424S1424FtCttTt6363B.1.351.20.019062
ORF1ab/nsp31424S1424FtCttTt6161AY.1020.001617
ORF1ab/nsp31424S1424CtCttGt6161AY.250.000367
ORF1ab/nsp31424S1424FtCttTt6161AY.390.001507
ORF1ab/nsp31424S1424ATctGct5858All0.000011
ORF1ab/nsp31424S1424FtCttTt5555AY.16.10.025846
ORF1ab/nsp31424S1424FtCttTt5050AY.1180.003132
ORF1ab/nsp31424S1424FtCttTt5050B.1.1390.036657
ORF1ab/nsp31424S1424PTctCct4646B.1.5260.001081
ORF1ab/nsp31424S1424FtCttTt4545B.1.177.830.066667
ORF1ab/nsp31424S1424FtCttTt4545B.1.621.10.022762
ORF1ab/nsp31424S1424FtCttTt4343B.1.5260.001011
ORF1ab/nsp31424S1424ATctGct4141B.1.1.70.000037
ORF1ab/nsp31424S1424FtCttTt4141B.1.4290.000965
ORF1ab/nsp31424S1424FtCttTt3838AY.9.20.001396
ORF1ab/nsp31424S1424YtCttAt3636AY.40.000056
ORF1ab/nsp31424S1424FtCttTt3636AY.90.002433
ORF1ab/nsp31424S1424TTctAct3335All0.000006
ORF1ab/nsp31424S1424TTcTAcG235All0
ORF1ab/nsp31424S1424FtCttTt3535AY.4.20.000759
ORF1ab/nsp31424S1424FtCttTt3535B.1.5750.010619
ORF1ab/nsp31424S1424CtCttGt3535B.1.5960.00305
ORF1ab/nsp31424S1424PTctCct3030B.1.1.70.000027
ORF1ab/nsp31424S1424FtCttTt3030B.1.3510.000892
ORF1ab/nsp31424S1424FtCttTt2929P.1.150.006738
ORF1ab/nsp31424S1424FtCttTt2727AY.50.000558
ORF1ab/nsp31424S1424TTctAct2323AY.1130.003275
ORF1ab/nsp31424S1424YtCttAt2323AY.4.50.002472
ORF1ab/nsp31424S1424FtCttTt2222AY.610.002305
ORF1ab/nsp31424S1424FtCttTt2222B.1.1.5190.000874
ORF1ab/nsp31424S1424FtCttTt2222B.1.2410.017857
ORF1ab/nsp31424S1424FtCttTt2121B.1.258.170.002183
ORF1ab/nsp31424S1424FtCttTt2020P.20.003733
ORF1ab/nsp31424S1424FtCttTt1919AY.1000.000874
ORF1ab/nsp31424S1424FtCttTt1919AY.200.000738
ORF1ab/nsp31424S1424delTCT---1919AY.40.00003
ORF1ab/nsp31424S1424FtCttTt1919B.1.177.200.028832
ORF1ab/nsp31424S1424FtCttTt1919B.1.6360.127517
ORF1ab/nsp31424S1424FtCttTt1818AY.9.10.001507
ORF1ab/nsp31424S1424FtCttTt1818B.1.5610.007146
ORF1ab/nsp31424S1424FtCttTt1717AY.39.10.000673
ORF1ab/nsp31424S1424delTCT---1717B.1.1770.000224
ORF1ab/nsp31424S1424YtCttAt1616B.1.1.70.000014
ORF1ab/nsp31424S1424FtCttTt1515AY.140.00132
ORF1ab/nsp31424S1424FtCttTt1515AY.330.001002
ORF1ab/nsp31424S1424FtCttTt1414B.1.1.1760.006151
ORF1ab/nsp31424S1424FtCttTt1414B.1.1600.000437
ORF1ab/nsp31424S1424FtCttTt1313AY.320.006922
ORF1ab/nsp31424S1424FtCttTt1313B.1.6210.001151
ORF1ab/nsp31424S1424FtCttTt1212AY.750.000672
ORF1ab/nsp31424S1424FtCttTt1212B.1.5720.3
ORF1ab/nsp31424S1424FtCttTt1212B.1.5960.001046
ORF1ab/nsp31424S1424FtCttTt1111AY.420.000443
ORF1ab/nsp31424S1424delTCT---1111B.10.000101
ORF1ab/nsp31424S1424FtCttTt1111B.1.2210.000781
ORF1ab/nsp31424S1424FtCttTt1111B.1.2430.000765
ORF1ab/nsp31424S1424FtCttTt1111B.1.360.001605
ORF1ab/nsp31424S1424FtCttTt1010AY.29.10.002205
ORF1ab/nsp31424S1424FtCttTt1010B.1.1.2140.000555
ORF1ab/nsp31424S1424FtCttTt1010B.1.177.80.007524
ORF1ab/nsp31424S1424FtCttTt1010B.1.177.870.007278
ORF1ab/nsp31424S1424FtCttTt1010P.1.140.000478
ORF1ab/nsp31424S1424FtCttTt99AY.1190.000318
ORF1ab/nsp31424S1424StcTtcC99AY.40.000014
ORF1ab/nsp31424S1424FtCttTt99C.370.001045
ORF1ab/nsp31424S1424FtCttTt88AY.1170.000676
ORF1ab/nsp31424S1424FtCttTt88AY.300.003166
ORF1ab/nsp31424S1424FtCttTt88AY.360.001186
ORF1ab/nsp31424S1424FtCttTt88AY.540.000763
ORF1ab/nsp31424S1424FtCttTt88B.1.1.3060.003507
ORF1ab/nsp31424S1424FtCttTt88B.1.2060.006525
ORF1ab/nsp31424S1424FtCttTt88B.1.5250.000905
ORF1ab/nsp31424S1424FtCttTt88B.1.6320.053691
ORF1ab/nsp31424S1424FtCttTt88P.1.170.001294
ORF1ab/nsp31424S1424del1tcTtc-57All0.000001
ORF1ab/nsp31424S1424del1tCtt-t27All0
ORF1ab/nsp31424S1424FtCttTt77AY.1080.007718
ORF1ab/nsp31424S1424StcTtcC77AY.250.000042
ORF1ab/nsp31424S1424FtCttTt77AY.5.30.002362
ORF1ab/nsp31424S1424delTCT---77B.1.10.000127
ORF1ab/nsp31424S1424FtCttTt77B.1.1.1890.01059
ORF1ab/nsp31424S1424FtCttTt77B.1.1.630.002701
ORF1ab/nsp31424S1424FtCttTt77B.1.466.20.002739
ORF1ab/nsp31424S1424FtCttTt66A0.002322
ORF1ab/nsp31424S1424FtCttTt66AY.1130.000854
ORF1ab/nsp31424S1424FtCttTt66AY.20.002137
ORF1ab/nsp31424S1424delTCT---66AY.4.50.000645
ORF1ab/nsp31424S1424FtCttTt66AY.46.60.000433
ORF1ab/nsp31424S1424FtCttTt66AY.60.000247
ORF1ab/nsp31424S1424FtCttTt66AY.98.10.000291
ORF1ab/nsp31424S1424StcTtcC66B.10.000055
ORF1ab/nsp31424S1424FtCttTt66B.1.1.4190.044444
ORF1ab/nsp31424S1424StcTtcC56B.1.20.000044
ORF1ab/nsp31424S1424StcTtcA16B.1.20.000009
ORF1ab/nsp31424S1424StcTtcC66B.1.2430.000418
ORF1ab/nsp31424S1424FtCttTt66B.1.438.10.000644
ORF1ab/nsp31424S1424FtCttTt66B.1.5170.002562
ORF1ab/nsp31424S1424FtCttTt66P.60.018868
ORF1ab/nsp31424S1424FtCttTt66Q.40.002729
ORF1ab/nsp31424S1424FtCttTt55AY.3.10.000426
ORF1ab/nsp31424S1424delTCT---55AY.430.000022
ORF1ab/nsp31424S1424FtCttTt55AY.460.00052
ORF1ab/nsp31424S1424FtCttTt55AY.550.004587
ORF1ab/nsp31424S1424YtCttAt55AY.90.000338
ORF1ab/nsp31424S1424FtCttTt55B.1.1.2160.004452
ORF1ab/nsp31424S1424FtCttTt55B.1.177.620.005959
ORF1ab/nsp31424S1424FtCttTt55B.1.2400.001078
ORF1ab/nsp31424S1424StcTtcG55B.1.4290.000118
ORF1ab/nsp31424S1424FtCttTt55B.1.6090.002397
ORF1ab/nsp31424S1424StcTtcC45P.10.000063
ORF1ab/nsp31424S1424StcTtcG15P.10.000016
ORF1ab/nsp31424S1424FtCttTt55Q.80.000825
ORF1ab/nsp31424S1424delTCT---440.222222
ORF1ab/nsp31424S1424FtCttTt44A.2.50.001996
ORF1ab/nsp31424S1424del2tCTt--34All0.000001
ORF1ab/nsp31424S1424del2TCt--t14All0
ORF1ab/nsp31424S1424StcTtcC44AY.1200.000149
ORF1ab/nsp31424S1424FtCttTt44AY.230.000279
ORF1ab/nsp31424S1424FtCttTt44AY.270.000259
ORF1ab/nsp31424S1424FtCttTt44AY.46.30.003735
ORF1ab/nsp31424S1424FtCttTt44AY.46.40.000658
ORF1ab/nsp31424S1424CtCttGt44AY.46.50.000794
ORF1ab/nsp31424S1424FtCttTt44AY.740.000463
ORF1ab/nsp31424S1424YtCttAt44AY.80.002424
ORF1ab/nsp31424S1424FtCttTt44AY.950.003044
ORF1ab/nsp31424S1424FtCttTt44AY.990.004197
ORF1ab/nsp31424S1424YtCttAt44B.10.000037
ORF1ab/nsp31424S1424FtCttTt44B.1.1.280.001245
ORF1ab/nsp31424S1424TTctAct44B.1.1.3010.004717
ORF1ab/nsp31424S1424delTCT---44B.1.177.40.000844
ORF1ab/nsp31424S1424FtCttTt44B.1.36.290.002069
ORF1ab/nsp31424S1424FtCttTt44B.1.36.80.004
ORF1ab/nsp31424S1424FtCttTt44B.1.3710.004489
ORF1ab/nsp31424S1424FtCttTt44B.1.5870.00759
ORF1ab/nsp31424S1424delTCT---44B.1.617.20.000015
ORF1ab/nsp31424S1424StcTtcC44B.1.617.20.000015
ORF1ab/nsp31424S1424FtCttTt44B.1.6270.008081
ORF1ab/nsp31424S1424FtCttTt44N.50.007067
ORF1ab/nsp31424S1424FtCttTt33A.10.000846
ORF1ab/nsp31424S1424XtCTtAA23All0
ORF1ab/nsp31424S1424XtCTtAG13All0
ORF1ab/nsp31424S1424FtCttTt33AY.10.001187
ORF1ab/nsp31424S1424FtCttTt33AY.120.000948
ORF1ab/nsp31424S1424FtCttTt33AY.120.20.003856
ORF1ab/nsp31424S1424FtCttTt33AY.130.000483
ORF1ab/nsp31424S1424PTctCct33AY.250.000018
ORF1ab/nsp31424S1424FtCttTt33AY.290.000047
ORF1ab/nsp31424S1424CtCttGt33AY.290.000047
ORF1ab/nsp31424S1424StcTtcC23AY.30.00002
ORF1ab/nsp31424S1424StcTtcG13AY.30.00001
ORF1ab/nsp31424S1424FtCttTt33AY.4.50.000322
ORF1ab/nsp31424S1424StcTtcG23AY.440.000012
ORF1ab/nsp31424S1424StcTtcC13AY.440.000006
ORF1ab/nsp31424S1424FtCttTt33AY.980.000237
ORF1ab/nsp31424S1424FtCttTt33B.1.1.2220.000612
ORF1ab/nsp31424S1424FtCttTt33B.1.1.480.008621
ORF1ab/nsp31424S1424FtCttTt33B.1.1.5210.016043
ORF1ab/nsp31424S1424FtCttTt33B.1.1110.003525
ORF1ab/nsp31424S1424FtCttTt33B.1.1460.012712
ORF1ab/nsp31424S1424FtCttTt33B.1.177.790.007026
ORF1ab/nsp31424S1424delTCT---33B.1.20.000026
ORF1ab/nsp31424S1424FtCttTt33B.1.214.20.001799
ORF1ab/nsp31424S1424FtCttTt33B.1.2320.001612
ORF1ab/nsp31424S1424StcTtcC33B.1.3510.000089
ORF1ab/nsp31424S1424FtCttTt33B.1.36.340.06383
ORF1ab/nsp31424S1424FtCttTt33B.1.3690.000856
ORF1ab/nsp31424S1424PTctCct33B.1.6210.000266
ORF1ab/nsp31424S1424FtCttTt33B.1.6230.001609
ORF1ab/nsp31424S1424ATctGct33P.1.150.000697
ORF1ab/nsp31424S1424FtCttTt33P.1.20.003468
ORF1ab/nsp31424S1424del2tCTt--220.111111
ORF1ab/nsp31424S1424TTctAct12A.2.40.003367
ORF1ab/nsp31424S1424TTcTAcG12A.2.40.003367
ORF1ab/nsp31424S1424KTCTAAG12All0
ORF1ab/nsp31424S1424KTCTAAA12All0
ORF1ab/nsp31424S1424StcTtcC22AY.1020.000053
ORF1ab/nsp31424S1424FtCttTt22AY.1060.00067
ORF1ab/nsp31424S1424FtCttTt22AY.1090.001479
ORF1ab/nsp31424S1424FtCttTt22AY.1160.000574
ORF1ab/nsp31424S1424YtCttAt22AY.1200.000074
ORF1ab/nsp31424S1424FtCttTt22AY.1210.000271
ORF1ab/nsp31424S1424FtCttTt22AY.340.000194
ORF1ab/nsp31424S1424FtCttTt22AY.350.000466
ORF1ab/nsp31424S1424FtCttTt22AY.370.000632
ORF1ab/nsp31424S1424FtCttTt22AY.410.000588
ORF1ab/nsp31424S1424StcTtcC22AY.430.000009
ORF1ab/nsp31424S1424FtCttTt22AY.450.000243
ORF1ab/nsp31424S1424FtCttTt22AY.46.50.000397
ORF1ab/nsp31424S1424FtCttTt22AY.480.00093
ORF1ab/nsp31424S1424delTCT---22AY.50.000041
ORF1ab/nsp31424S1424FtCttTt22AY.5.40.000553
ORF1ab/nsp31424S1424YtCttAt22AY.580.001815
ORF1ab/nsp31424S1424FtCttTt22AY.670.000929
ORF1ab/nsp31424S1424PTctCct22AY.740.000231
ORF1ab/nsp31424S1424FtCttTt22B0.000256
ORF1ab/nsp31424S1424ATctGct22B.10.000018
ORF1ab/nsp31424S1424PTctCct22B.10.000018
ORF1ab/nsp31424S1424PTctCct22B.1.10.000036
ORF1ab/nsp31424S1424FtCttTt22B.1.1.330.000842
ORF1ab/nsp31424S1424FtCttTt22B.1.1.3480.001592
ORF1ab/nsp31424S1424FtCttTt22B.1.1.3720.001377
ORF1ab/nsp31424S1424FtCttTt22B.1.1.5220.034483
ORF1ab/nsp31424S1424PTctCct22B.1.1.700.000682
ORF1ab/nsp31424S1424FtCttTt22B.1.177.120.000303
ORF1ab/nsp31424S1424FtCttTt22B.1.177.160.001329
ORF1ab/nsp31424S1424FtCttTt22B.1.177.210.000153
ORF1ab/nsp31424S1424FtCttTt22B.1.177.330.003289
ORF1ab/nsp31424S1424FtCttTt22B.1.177.40.000422
ORF1ab/nsp31424S1424delTCT---22B.1.177.570.000562
ORF1ab/nsp31424S1424FtCttTt22B.1.177.570.000562
ORF1ab/nsp31424S1424YtCttAt22B.1.20.000018
ORF1ab/nsp31424S1424delTCT---22B.1.2210.000142
ORF1ab/nsp31424S1424FtCttTt22B.1.2230.005556
ORF1ab/nsp31424S1424FtCttTt22B.1.2340.000264
ORF1ab/nsp31424S1424FtCttTt22B.1.2580.000133
ORF1ab/nsp31424S1424FtCttTt22B.1.3200.002491
ORF1ab/nsp31424S1424FtCttTt22B.1.351.30.001753
ORF1ab/nsp31424S1424FtCttTt22B.1.3670.001585
ORF1ab/nsp31424S1424FtCttTt22B.1.4090.001563
ORF1ab/nsp31424S1424FtCttTt22B.1.4160.002538
ORF1ab/nsp31424S1424FtCttTt22B.1.4620.014493
ORF1ab/nsp31424S1424FtCttTt22B.1.4680.011429
ORF1ab/nsp31424S1424FtCttTt22B.1.5030.004975
ORF1ab/nsp31424S1424delTCT---22B.1.5170.000854
ORF1ab/nsp31424S1424FtCttTt22B.1.5880.00182
ORF1ab/nsp31424S1424FtCttTt22B.1.5950.000522
ORF1ab/nsp31424S1424CtCttGt22B.1.617.20.000008
ORF1ab/nsp31424S1424ATctGct22B.1.617.20.000008
ORF1ab/nsp31424S1424FtCttTt22B.1.6370.000146
ORF1ab/nsp31424S1424FtCttTt22B.40.004415
ORF1ab/nsp31424S1424FtCttTt22B.400.000729
ORF1ab/nsp31424S1424PTctCct22B.60.00182
ORF1ab/nsp31424S1424FtCttTt22C.360.001821
ORF1ab/nsp31424S1424delTCT---22P.10.000032
ORF1ab/nsp31424S1424PTctCct22P.10.000032
ORF1ab/nsp31424S1424StcTtcG22P.1.140.000096
ORF1ab/nsp31424S1424FtCttTt22Q.10.000253
ORF1ab/nsp31424S1424delTCT---22U.30.007722
ORF1ab/nsp31424S1424delTCT---11A0.000387
ORF1ab/nsp31424S1424FtCttTt11A.20.000662
ORF1ab/nsp31424S1424NTCtAAt11A.2.40.003367
ORF1ab/nsp31424S1424StcTtcG11A.2.40.003367
ORF1ab/nsp31424S1424KTCTAAG11A.2.40.003367
ORF1ab/nsp31424S1424XtCTtAG11A.2.40.003367
ORF1ab/nsp31424S1424delTCT---11A.2.40.003367
ORF1ab/nsp31424S1424YtCttAt11A.2.40.003367
ORF1ab/nsp31424S1424delTCT---11A.280.002646
ORF1ab/nsp31424S1424FtCttTt11AD.10.004115
ORF1ab/nsp31424S1424delTCT---11AD.20.000219
ORF1ab/nsp31424S1424XtCTtAA11AE.30.032258
ORF1ab/nsp31424S1424VTCtGTt11All0
ORF1ab/nsp31424S1424NTCtAAt11All0
ORF1ab/nsp31424S1424ITCtATt11All0
ORF1ab/nsp31424S1424StcTtcC11AY.1030.000006
ORF1ab/nsp31424S1424ATctGct11AY.1030.000006
ORF1ab/nsp31424S1424PTctCct11AY.1030.000006
ORF1ab/nsp31424S1424delTCT---11AY.1030.000006
ORF1ab/nsp31424S1424FtCttTt11AY.1050.000643
ORF1ab/nsp31424S1424FtCttTt11AY.1110.000183
ORF1ab/nsp31424S1424FtCttTt11AY.1140.000231
ORF1ab/nsp31424S1424FtCttTt11AY.116.10.000311
ORF1ab/nsp31424S1424CtCttGt11AY.1170.000085
ORF1ab/nsp31424S1424StcTtcC11AY.1190.000035
ORF1ab/nsp31424S1424CtCttGt11AY.1190.000035
ORF1ab/nsp31424S1424ATctGct11AY.120.000316
ORF1ab/nsp31424S1424delTCT---11AY.1200.000037
ORF1ab/nsp31424S1424PTctCct11AY.140.000088
ORF1ab/nsp31424S1424YtCttAt11AY.170.008197
ORF1ab/nsp31424S1424StcTtcC11AY.200.000039
ORF1ab/nsp31424S1424TTctAct11AY.230.00007
ORF1ab/nsp31424S1424FtCttTt11AY.23.10.000417
ORF1ab/nsp31424S1424delTCT---11AY.240.000431
ORF1ab/nsp31424S1424delTCT---11AY.250.000006
ORF1ab/nsp31424S1424ATctGct11AY.290.000016
ORF1ab/nsp31424S1424PTctCct11AY.290.000016
ORF1ab/nsp31424S1424StcTtcG11AY.290.000016
ORF1ab/nsp31424S1424ATctGct11AY.30.00001
ORF1ab/nsp31424S1424delTCT---11AY.360.000148
ORF1ab/nsp31424S1424FtCttTt11AY.380.000499
ORF1ab/nsp31424S1424StcTtcA11AY.390.000025
ORF1ab/nsp31424S1424CtCttGt11AY.390.000025
ORF1ab/nsp31424S1424PTctCct11AY.40.000002
ORF1ab/nsp31424S1424CtCttGt11AY.40.000002
ORF1ab/nsp31424S1424FtCttTt11AY.4.30.000842
ORF1ab/nsp31424S1424delTCT---11AY.420.00004
ORF1ab/nsp31424S1424CtCttGt11AY.420.00004
ORF1ab/nsp31424S1424PTctCct11AY.440.000006
ORF1ab/nsp31424S1424ATctGct11AY.440.000006
ORF1ab/nsp31424S1424TTctAct11AY.460.000104
ORF1ab/nsp31424S1424YtCttAt11AY.460.000104
ORF1ab/nsp31424S1424FtCttTt11AY.46.10.001027
ORF1ab/nsp31424S1424del1tcTtc-11AY.46.40.000165
ORF1ab/nsp31424S1424YtCttAt11AY.46.40.000165
ORF1ab/nsp31424S1424StcTtcC11AY.46.50.000198
ORF1ab/nsp31424S1424StcTtcC11AY.470.000031
ORF1ab/nsp31424S1424FtCttTt11AY.500.000799
ORF1ab/nsp31424S1424FtCttTt11AY.530.000288
ORF1ab/nsp31424S1424YtCttAt11AY.550.000917
ORF1ab/nsp31424S1424FtCttTt11AY.580.000907
ORF1ab/nsp31424S1424FtCttTt11AY.600.000938
ORF1ab/nsp31424S1424delTCT---11AY.600.000938
ORF1ab/nsp31424S1424delTCT---11AY.610.000105
ORF1ab/nsp31424S1424FtCttTt11AY.620.000436
ORF1ab/nsp31424S1424FtCttTt11AY.70.000196
ORF1ab/nsp31424S1424FtCttTt11AY.7.10.000113
ORF1ab/nsp31424S1424delTCT---11AY.720.001361
ORF1ab/nsp31424S1424PTctCct11AY.720.001361
ORF1ab/nsp31424S1424delTCT---11AY.730.000665
ORF1ab/nsp31424S1424FtCttTt11AY.75.10.00018
ORF1ab/nsp31424S1424StcTtcC11AY.790.001211
ORF1ab/nsp31424S1424FtCTtTC11AY.850.000427
ORF1ab/nsp31424S1424YtCttAt11AY.870.000833
ORF1ab/nsp31424S1424FtCttTt11AY.870.000833
ORF1ab/nsp31424S1424delTCT---11AY.9.20.000037
ORF1ab/nsp31424S1424FtCttTt11AY.930.000273
ORF1ab/nsp31424S1424StcTtcC11AY.950.000761
ORF1ab/nsp31424S1424delTCT---11AY.99.10.001553
ORF1ab/nsp31424S1424StcTtcC11AY.99.20.000092
ORF1ab/nsp31424S1424FtCttTt11AY.99.20.000092
ORF1ab/nsp31424S1424del1tcTtc-11B.10.000009
ORF1ab/nsp31424S1424CtCttGt11B.10.000009
ORF1ab/nsp31424S1424TTctAct11B.1.10.000018
ORF1ab/nsp31424S1424FtCttTt11B.1.1.10.000327
ORF1ab/nsp31424S1424FtCttTt11B.1.1.100.001115
ORF1ab/nsp31424S1424StcTtcC11B.1.1.1010.01
ORF1ab/nsp31424S1424PTctCct11B.1.1.1740.003378
ORF1ab/nsp31424S1424FtCttTt11B.1.1.1740.003378
ORF1ab/nsp31424S1424FtCttTt11B.1.1.1960.005714
ORF1ab/nsp31424S1424FtCttTt11B.1.1.2070.001182
ORF1ab/nsp31424S1424PTctCct11B.1.1.2200.001859
ORF1ab/nsp31424S1424PTctCct11B.1.1.2250.007194
ORF1ab/nsp31424S1424delTCT---11B.1.1.2360.006897
ORF1ab/nsp31424S1424StcTtcA11B.1.1.2690.001353
ORF1ab/nsp31424S1424PTctCct11B.1.1.2690.001353
ORF1ab/nsp31424S1424FtCttTt11B.1.1.2770.000759
ORF1ab/nsp31424S1424PTctCct11B.1.1.2840.000107
ORF1ab/nsp31424S1424FtCttTt11B.1.1.3010.001179
ORF1ab/nsp31424S1424delTCT---11B.1.1.3150.008475
ORF1ab/nsp31424S1424FtCttTt11B.1.1.3160.000925
ORF1ab/nsp31424S1424FtCttTt11B.1.1.3590.027778
ORF1ab/nsp31424S1424FtCttTt11B.1.1.3690.000446
ORF1ab/nsp31424S1424delTCT---11B.1.1.370.000193
ORF1ab/nsp31424S1424FtCttTt11B.1.1.3710.010417
ORF1ab/nsp31424S1424FtCttTt11B.1.1.3880.045455
ORF1ab/nsp31424S1424FtCttTt11B.1.1.3970.002252
ORF1ab/nsp31424S1424delTCT---11B.1.1.4090.002833
ORF1ab/nsp31424S1424FtCttTt11B.1.1.4090.002833
ORF1ab/nsp31424S1424del1tcTtc-11B.1.1.4110.014706
ORF1ab/nsp31424S1424ATctGct11B.1.1.4170.002703
ORF1ab/nsp31424S1424FtCttTt11B.1.1.4320.001266
ORF1ab/nsp31424S1424FtCttTt11B.1.1.4640.001473
ORF1ab/nsp31424S1424FtCttTt11B.1.1.5000.02
ORF1ab/nsp31424S1424delTCT---11B.1.1.510.001718
ORF1ab/nsp31424S1424FtCttTt11B.1.1.520.012195
ORF1ab/nsp31424S1424FtCttTt11B.1.1.5230.001563
ORF1ab/nsp31424S1424FtCttTt11B.1.1.5260.003546
ORF1ab/nsp31424S1424FtCttTt11B.1.1.570.011494
ORF1ab/nsp31424S1424CtCttGt11B.1.1.630.000386
ORF1ab/nsp31424S1424FtCttTt11B.1.1.670.004566
ORF1ab/nsp31424S1424ITCtATt11B.1.1.70.000001
ORF1ab/nsp31424S1424del2tCTt--11B.1.1.70.000001
ORF1ab/nsp31424S1424FtCttTt11B.1.1.700.000341
ORF1ab/nsp31424S1424delTCT---11B.1.1.700.000341
ORF1ab/nsp31424S1424FtCttTt11B.1.1.820.038462
ORF1ab/nsp31424S1424FtCttTt11B.1.1.830.00271
ORF1ab/nsp31424S1424FtCttTt11B.1.1040.00369
ORF1ab/nsp31424S1424ATctGct11B.1.110.30.000718
ORF1ab/nsp31424S1424FtCttTt11B.1.110.30.000718
ORF1ab/nsp31424S1424StcTtcC11B.1.1600.000031
ORF1ab/nsp31424S1424StcTtcC11B.1.160.110.005714
ORF1ab/nsp31424S1424FtCttTt11B.1.160.160.000929
ORF1ab/nsp31424S1424FtCttTt11B.1.160.220.006757
ORF1ab/nsp31424S1424delTCT---11B.1.160.230.004831
ORF1ab/nsp31424S1424FtCttTt11B.1.160.250.011111
ORF1ab/nsp31424S1424delTCT---11B.1.160.70.002079
ORF1ab/nsp31424S1424YtCttAt11B.1.1770.000013
ORF1ab/nsp31424S1424ATctGct11B.1.1770.000013
ORF1ab/nsp31424S1424StcTtcC11B.1.1770.000013
ORF1ab/nsp31424S1424PTctCct11B.1.1770.000013
ORF1ab/nsp31424S1424delTCT---11B.1.177.150.000631
ORF1ab/nsp31424S1424delTCT---11B.1.177.160.000664
ORF1ab/nsp31424S1424delTCT---11B.1.177.190.001431
ORF1ab/nsp31424S1424delTCT---11B.1.177.210.000076
ORF1ab/nsp31424S1424StcTtcC11B.1.177.210.000076
ORF1ab/nsp31424S1424FtCttTt11B.1.177.320.00135
ORF1ab/nsp31424S1424FtCttTt11B.1.177.400.005155
ORF1ab/nsp31424S1424YtCttAt11B.1.177.440.000519
ORF1ab/nsp31424S1424delTCT---11B.1.177.540.000606
ORF1ab/nsp31424S1424delTCT---11B.1.177.560.000668
ORF1ab/nsp31424S1424PTctCct11B.1.177.570.000281
ORF1ab/nsp31424S1424delTCT---11B.1.177.60.000977
ORF1ab/nsp31424S1424FtCttTt11B.1.177.60.000977
ORF1ab/nsp31424S1424FtCttTt11B.1.177.600.000218
ORF1ab/nsp31424S1424delTCT---11B.1.177.620.001192
ORF1ab/nsp31424S1424delTCT---11B.1.177.680.015152
ORF1ab/nsp31424S1424StcTtcC11B.1.177.750.001041
ORF1ab/nsp31424S1424delTCT---11B.1.177.760.002494
ORF1ab/nsp31424S1424PTctCct11B.1.177.770.000726
ORF1ab/nsp31424S1424FtCttTt11B.1.177.820.000477
ORF1ab/nsp31424S1424delTCT---11B.1.177.870.000728
ORF1ab/nsp31424S1424delTCT---11B.1.177.90.001332
ORF1ab/nsp31424S1424FtCttTt11B.1.1950.005025
ORF1ab/nsp31424S1424PTctCct11B.1.20.000009
ORF1ab/nsp31424S1424del1tcTtc-11B.1.20.000009
ORF1ab/nsp31424S1424FtCttTt11B.1.2100.002132
ORF1ab/nsp31424S1424TTctAct11B.1.2210.000071
ORF1ab/nsp31424S1424StcTtcC11B.1.2210.000071
ORF1ab/nsp31424S1424StcTtcC11B.1.2410.000812
ORF1ab/nsp31424S1424delTCT---11B.1.2580.000067
ORF1ab/nsp31424S1424YtCttAt11B.1.2580.000067
ORF1ab/nsp31424S1424delTCT---11B.1.258.100.011364
ORF1ab/nsp31424S1424FtCttTt11B.1.258.190.007092
ORF1ab/nsp31424S1424FtCttTt11B.1.2650.001271
ORF1ab/nsp31424S1424FtCttTt11B.1.3110.000275
ORF1ab/nsp31424S1424del1tcTtc-11B.1.3110.000275
ORF1ab/nsp31424S1424FtCttTt11B.1.3320.003497
ORF1ab/nsp31424S1424FtCttTt11B.1.3330.010526
ORF1ab/nsp31424S1424delTCT---11B.1.3510.00003
ORF1ab/nsp31424S1424StcTtcG11B.1.351.30.000876
ORF1ab/nsp31424S1424FtCttTt11B.1.36.170.000494
ORF1ab/nsp31424S1424FtCttTt11B.1.36.220.001208
ORF1ab/nsp31424S1424delTCT---11B.1.36.220.001208
ORF1ab/nsp31424S1424delTCT---11B.1.36.380.001642
ORF1ab/nsp31424S1424YtCttAt11B.1.3610.001289
ORF1ab/nsp31424S1424FtCttTt11B.1.3890.001002
ORF1ab/nsp31424S1424del2TCt--t11B.1.3890.001002
ORF1ab/nsp31424S1424FtCttTt11B.1.3910.001127
ORF1ab/nsp31424S1424FtCttTt11B.1.3960.000706
ORF1ab/nsp31424S1424KTCTAAA11B.1.4150.014286
ORF1ab/nsp31424S1424delTCT---11B.1.416.10.001563
ORF1ab/nsp31424S1424FtCttTt11B.1.4280.00102
ORF1ab/nsp31424S1424FtCttTt11B.1.4330.003195
ORF1ab/nsp31424S1424FtCttTt11B.1.4380.006536
ORF1ab/nsp31424S1424YtCttAt11B.1.4530.003236
ORF1ab/nsp31424S1424FtCttTt11B.1.4590.004082
ORF1ab/nsp31424S1424FtCttTt11B.1.4690.00361
ORF1ab/nsp31424S1424FtCttTt11B.1.4740.001901
ORF1ab/nsp31424S1424PTctCct11B.1.4800.002488
ORF1ab/nsp31424S1424YtCttAt11B.1.5030.002488
ORF1ab/nsp31424S1424TTcTAcG11B.1.5240.001406
ORF1ab/nsp31424S1424delTCT---11B.1.5250.000113
ORF1ab/nsp31424S1424FtCttTt11B.1.5640.000426
ORF1ab/nsp31424S1424StcTtcC11B.1.5640.000426
ORF1ab/nsp31424S1424FtCttTt11B.1.564.10.001577
ORF1ab/nsp31424S1424FtCttTt11B.1.5710.009709
ORF1ab/nsp31424S1424delTCT---11B.1.5750.000303
ORF1ab/nsp31424S1424FtCttTt11B.1.575.10.002439
ORF1ab/nsp31424S1424FtCttTt11B.1.5820.000491
ORF1ab/nsp31424S1424StcTtcC11B.1.5950.000261
ORF1ab/nsp31424S1424del1tCtt-t11B.1.5950.000261
ORF1ab/nsp31424S1424delTCT---11B.1.5960.000087
ORF1ab/nsp31424S1424YtCttAt11B.1.5990.00365
ORF1ab/nsp31424S1424FtCttTt11B.1.6030.010638
ORF1ab/nsp31424S1424XtCTtAA11B.1.617.10.000129
ORF1ab/nsp31424S1424del1tCtt-t11B.1.617.10.000129
ORF1ab/nsp31424S1424FtCttTt11B.1.617.10.000129
ORF1ab/nsp31424S1424PTctCct11B.1.617.20.000004
ORF1ab/nsp31424S1424YtCttAt11B.1.617.20.000004
ORF1ab/nsp31424S1424PTctCct11B.1.617.30.002985
ORF1ab/nsp31424S1424delTCT---11B.1.6210.000089
ORF1ab/nsp31424S1424delTCT---11B.1.621.10.000506
ORF1ab/nsp31424S1424FtCttTt11B.1.6280.000352
ORF1ab/nsp31424S1424delTCT---11B.1.6300.005236
ORF1ab/nsp31424S1424FtCttTt11B.1.780.008547
ORF1ab/nsp31424S1424FtCttTt11B.1.9.50.005682
ORF1ab/nsp31424S1424StcTtcC11B.400.000364
ORF1ab/nsp31424S1424FtCttTt11B.6.60.000889
ORF1ab/nsp31424S1424TTctAct11B.610.005747
ORF1ab/nsp31424S1424FtCttTt11C.10.002392
ORF1ab/nsp31424S1424VTCtGTt11C.350.000774
ORF1ab/nsp31424S1424FtCttTt11C.36.30.000567
ORF1ab/nsp31424S1424PTctCct11D.20.000075
ORF1ab/nsp31424S1424FtCttTt11D.20.000075
ORF1ab/nsp31424S1424StcTtcC11D.20.000075
ORF1ab/nsp31424S1424FtCttTt11N.30.005814
ORF1ab/nsp31424S1424ATctGct11P.10.000016
ORF1ab/nsp31424S1424FtCttTt11P.1.10.000318
ORF1ab/nsp31424S1424FtCttTt11P.1.120.000484
ORF1ab/nsp31424S1424YtCttAt11P.1.140.000048
ORF1ab/nsp31424S1424ATctGct11P.1.140.000048
ORF1ab/nsp31424S1424delTCT---11P.1.150.000232
ORF1ab/nsp31424S1424FtCttTt11P.1.70.000319
ORF1ab/nsp31424S1424YtCttAt11Q.10.000126
ORF1ab/nsp31424S1424FtCttTt11R.10.00009
ORF1ab/nsp31424S1424FtCttTt11W.40.001351