CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1412

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1412	I1412T	I2230T	nonsyn	aTa	aCa	1122453	1122427	0.999977	6953-6955
ORF1ab/nsp3	1412	I1412T	I2230T	nonsyn	aTA	aCC	1122453	16	0.0000142545	6953-6955
ORF1ab/nsp3	1412	I1412T	I2230T	nonsyn	aTA	aCG	1122453	9	0.00000801815	6953-6955
ORF1ab/nsp3	1412	I1412T	I2230T	nonsyn	aTA	aCT	1122453	1	0.000000890906	6953-6955
ORF1ab/nsp3	1412	I1412M	I2230M	nonsyn	atA	atG	278	278	1	6953-6955
ORF1ab/nsp3	1412	I1412del	I2230del	del	ATA	---	232	232	1	6953-6955
ORF1ab/nsp3	1412	I1412V	I2230V	nonsyn	Ata	Gta	101	101	1	6953-6955
ORF1ab/nsp3	1412	I1412L	I2230L	nonsyn	Ata	Tta	23	21	0.913043	6953-6955
ORF1ab/nsp3	1412	I1412L	I2230L	nonsyn	Ata	Cta	23	2	0.0869565	6953-6955
ORF1ab/nsp3	1412	I1412K	I2230K	nonsyn	aTa	aAa	20	20	1	6953-6955
ORF1ab/nsp3	1412	I1412I	I2230I	syn	atA	atT	10	7	0.7	6953-6955
ORF1ab/nsp3	1412	I1412I	I2230I	syn	atA	atC	10	3	0.3	6953-6955
ORF1ab/nsp3	1412	I1412del1	I2230del1	del	Ata	-ta	8	4	0.5	6953-6955
ORF1ab/nsp3	1412	I1412del1	I2230del1	del	atA	at-	8	3	0.375	6953-6955
ORF1ab/nsp3	1412	I1412del1	I2230del1	del	aTa	a-a	8	1	0.125	6953-6955
ORF1ab/nsp3	1412	I1412A	I2230A	nonsyn	ATa	GCa	6	6	1	6953-6955
ORF1ab/nsp3	1412	I1412del2	I2230del2	del	ATa	--a	6	5	0.833333	6953-6955
ORF1ab/nsp3	1412	I1412del2	I2230del2	del	aTA	a--	6	1	0.166667	6953-6955
ORF1ab/nsp3	1412	I1412R	I2230R	nonsyn	aTa	aGa	3	3	1	6953-6955
ORF1ab/nsp3	1412	I1412X	I2230X	nonsyn	ATa	TAa	2	2	1	6953-6955
ORF1ab/nsp3	1412	I1412N	I2230N	nonsyn	aTA	aAT	2	1	0.5	6953-6955
ORF1ab/nsp3	1412	I1412N	I2230N	nonsyn	aTA	aAC	2	1	0.5	6953-6955
ORF1ab/nsp3	1412	I1412P	I2230P	nonsyn	ATa	CCa	1	1	1	6953-6955
ORF1ab/nsp3	1412	I1412Y	I2230Y	nonsyn	ATA	TAT	1	1	1	6953-6955
ORF1ab/nsp3	1412	I1412F	I2230F	nonsyn	AtA	TtT	1	1	1	6953-6955

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1122427	1122453	All	0.214677
ORF1ab/nsp3	1412	I1412T	aTA	aCC	16	1122453	All	0.000003
ORF1ab/nsp3	1412	I1412T	aTA	aCG	9	1122453	All	0.000002
ORF1ab/nsp3	1412	I1412T	aTA	aCT	1	1122453	All	0
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1090831	1090856	B.1.1.7	0.976537
ORF1ab/nsp3	1412	I1412T	aTA	aCC	16	1090856	B.1.1.7	0.000014
ORF1ab/nsp3	1412	I1412T	aTA	aCG	8	1090856	B.1.1.7	0.000007
ORF1ab/nsp3	1412	I1412T	aTA	aCT	1	1090856	B.1.1.7	0.000001
ORF1ab/nsp3	1412	I1412T	aTa	aCa	7746	7746	Q.1	0.978525
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6630	6630	Q.3	0.961566
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5927	5927	Q.8	0.977408
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2909	2910	B.1.1	0.052772
ORF1ab/nsp3	1412	I1412T	aTA	aCG	1	2910	B.1.1	0.000018
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2074	2074	Q.4	0.943156
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1479	1479	Q.2	0.907362
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1419	1419	B.1	0.012997
ORF1ab/nsp3	1412	I1412T	aTa	aCa	890	890	Q.7	0.988889
ORF1ab/nsp3	1412	I1412M	atA	atG	278	278	All	0.000053
ORF1ab/nsp3	1412	I1412del	ATA	---	232	232	All	0.000044
ORF1ab/nsp3	1412	I1412M	atA	atG	222	222	AY.102	0.005886
ORF1ab/nsp3	1412	I1412T	aTa	aCa	182	182	B.1.177.73	0.103058
ORF1ab/nsp3	1412	I1412T	aTa	aCa	153	153	AY.10	0.081081
ORF1ab/nsp3	1412	I1412T	aTa	aCa	148	148	Q.6	0.980132
ORF1ab/nsp3	1412	I1412T	aTa	aCa	133	133	B.1.375	0.109016
ORF1ab/nsp3	1412	I1412T	aTa	aCa	106	106	B.1.177.21	0.008106
ORF1ab/nsp3	1412	I1412V	Ata	Gta	101	101	All	0.000019
ORF1ab/nsp3	1412	I1412T	aTa	aCa	98	98	B.1.177	0.00129
ORF1ab/nsp3	1412	I1412T	aTa	aCa	90	90	B.1.2	0.000792
ORF1ab/nsp3	1412	I1412del	ATA	---	76	76	B.1.1.7	0.000068
ORF1ab/nsp3	1412	I1412T	aTa	aCa	75	75	B.1.526	0.001763
ORF1ab/nsp3	1412	I1412T	aTa	aCa	58	58	Q.5	0.983051
ORF1ab/nsp3	1412	I1412T	aTa	aCa	55	55	B.1.1.205	0.204461
ORF1ab/nsp3	1412	I1412T	aTa	aCa	54	54	B.1.221	0.003836
ORF1ab/nsp3	1412	I1412T	aTa	aCa	53	53	B.1.576	0.048051
ORF1ab/nsp3	1412	I1412T	aTa	aCa	52	52	B.1.617.2	0.000196
ORF1ab/nsp3	1412	I1412T	aTa	aCa	50	50	P.1	0.000788
ORF1ab/nsp3	1412	I1412T	aTa	aCa	49	49	AY.4.2	0.001063
ORF1ab/nsp3	1412	I1412T	aTa	aCa	43	43	B.1.596	0.003747
ORF1ab/nsp3	1412	I1412T	aTa	aCa	41	41	B.1.1.409	0.116147
ORF1ab/nsp3	1412	I1412T	aTa	aCa	39	39	AY.33	0.002604
ORF1ab/nsp3	1412	I1412T	aTa	aCa	36	36	B.1.177.7	0.005935
ORF1ab/nsp3	1412	I1412T	aTa	aCa	31	31	AY.43	0.000137
ORF1ab/nsp3	1412	I1412T	aTa	aCa	28	28	B.1.351	0.000832
ORF1ab/nsp3	1412	I1412T	aTa	aCa	26	26	B	0.003323
ORF1ab/nsp3	1412	I1412T	aTa	aCa	26	26	B.1.1.507	0.226087
ORF1ab/nsp3	1412	I1412T	aTa	aCa	26	26	P.1.1	0.008259
ORF1ab/nsp3	1412	I1412T	aTa	aCa	24	24	AY.44	0.000146
ORF1ab/nsp3	1412	I1412L	Ata	Tta	21	23	All	0.000004
ORF1ab/nsp3	1412	I1412L	Ata	Cta	2	23	All	0
ORF1ab/nsp3	1412	I1412T	aTa	aCa	23	23	B.1.429	0.000541
ORF1ab/nsp3	1412	I1412T	aTa	aCa	22	22	B.1.258	0.001464
ORF1ab/nsp3	1412	I1412T	aTa	aCa	22	22	B.1.575	0.006675
ORF1ab/nsp3	1412	I1412T	aTa	aCa	21	21	B.1.1.519	0.000834
ORF1ab/nsp3	1412	I1412T	aTa	aCa	21	21	B.1.623	0.011266
ORF1ab/nsp3	1412	I1412K	aTa	aAa	20	20	All	0.000004
ORF1ab/nsp3	1412	I1412del	ATA	---	19	19	AY.4	0.00003
ORF1ab/nsp3	1412	I1412T	aTa	aCa	18	18	B.1.1.220	0.033457
ORF1ab/nsp3	1412	I1412T	aTa	aCa	18	18	B.1.160	0.000561
ORF1ab/nsp3	1412	I1412T	aTa	aCa	18	18	B.1.609	0.008629
ORF1ab/nsp3	1412	I1412T	aTa	aCa	17	17	B.1.1.161	0.060071
ORF1ab/nsp3	1412	I1412M	atA	atG	17	17	B.1.346	0.02228
ORF1ab/nsp3	1412	I1412T	aTa	aCa	17	17	B.1.427	0.000858
ORF1ab/nsp3	1412	I1412T	aTa	aCa	16	16	AY.26	0.000453
ORF1ab/nsp3	1412	I1412T	aTa	aCa	16	16	AY.39	0.000395
ORF1ab/nsp3	1412	I1412T	aTa	aCa	16	16	AY.4	0.000025
ORF1ab/nsp3	1412	I1412del	ATA	---	16	16	B.1.177	0.000211
ORF1ab/nsp3	1412	I1412T	aTa	aCa	14	14	B.1.595	0.003653
ORF1ab/nsp3	1412	I1412del	ATA	---	13	13	B.1	0.000119
ORF1ab/nsp3	1412	I1412T	aTa	aCa	13	13	B.1.1.528	0.0625
ORF1ab/nsp3	1412	I1412T	aTa	aCa	13	13	B.1.637	0.00095
ORF1ab/nsp3	1412	I1412T	aTa	aCa	12	12	B.1.1.312	0.022945
ORF1ab/nsp3	1412	I1412T	aTa	aCa	12	12	P.1.16	0.004489
ORF1ab/nsp3	1412	I1412del	ATA	---	11	11	B.1.2	0.000097
ORF1ab/nsp3	1412	I1412I	atA	atT	7	10	All	0.000001
ORF1ab/nsp3	1412	I1412I	atA	atC	3	10	All	0.000001
ORF1ab/nsp3	1412	I1412T	aTa	aCa	10	10	AY.120	0.000372
ORF1ab/nsp3	1412	I1412T	aTa	aCa	10	10	B.1.580	0.04065
ORF1ab/nsp3	1412	I1412T	aTa	aCa	10	10	C.36.3	0.005672
ORF1ab/nsp3	1412	I1412T	aTa	aCa	9	9	AY.30	0.003562
ORF1ab/nsp3	1412	I1412T	aTa	aCa	9	9	AY.42	0.000362
ORF1ab/nsp3	1412	I1412T	aTa	aCa	9	9	B.1.157	0.026866
ORF1ab/nsp3	1412	I1412del1	Ata	-ta	4	8	All	0.000001
ORF1ab/nsp3	1412	I1412del1	atA	at-	3	8	All	0.000001
ORF1ab/nsp3	1412	I1412del1	aTa	a-a	1	8	All	0
ORF1ab/nsp3	1412	I1412M	atA	atG	8	8	AY.103	0.00005
ORF1ab/nsp3	1412	I1412V	Ata	Gta	8	8	AY.25	0.000048
ORF1ab/nsp3	1412	I1412L	Ata	Tta	8	8	AY.30	0.003166
ORF1ab/nsp3	1412	I1412V	Ata	Gta	8	8	AY.43	0.000035
ORF1ab/nsp3	1412	I1412del	ATA	---	8	8	B.1.1	0.000145
ORF1ab/nsp3	1412	I1412T	aTa	aCa	8	8	B.1.177.86	0.001468
ORF1ab/nsp3	1412	I1412V	Ata	Gta	8	8	B.1.621	0.000708
ORF1ab/nsp3	1412	I1412T	aTa	aCa	8	8	B.1.628	0.002819
ORF1ab/nsp3	1412	I1412T	aTa	aCa	8	8	P.1.17	0.001294
ORF1ab/nsp3	1412	I1412V	Ata	Gta	7	7	AY.14	0.000616
ORF1ab/nsp3	1412	I1412V	Ata	Gta	7	7	AY.4	0.000011
ORF1ab/nsp3	1412	I1412T	aTa	aCa	7	7	AY.59	0.003708
ORF1ab/nsp3	1412	I1412T	aTa	aCa	7	7	B.1.177.4	0.001477
ORF1ab/nsp3	1412	I1412T	aTa	aCa	7	7	B.1.206	0.00571
ORF1ab/nsp3	1412	I1412T	aTa	aCa	7	7	B.1.617.1	0.000903
ORF1ab/nsp3	1412	I1412T	aTa	aCa	7	7	C.1	0.016746
ORF1ab/nsp3	1412	I1412del	ATA	---	6	6		0.333333
ORF1ab/nsp3	1412	I1412A	ATa	GCa	6	6	All	0.000001
ORF1ab/nsp3	1412	I1412del2	ATa	--a	5	6	All	0.000001
ORF1ab/nsp3	1412	I1412del2	aTA	a--	1	6	All	0
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	AY.102	0.000159
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	AY.103	0.000037
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	AY.119	0.000212
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	AY.29	0.000095
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	AY.47	0.000187
ORF1ab/nsp3	1412	I1412V	Ata	Gta	6	6	AY.5	0.000124
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	AY.9.2	0.00022
ORF1ab/nsp3	1412	I1412A	ATa	GCa	6	6	B.1.1.7	0.000005
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	B.1.139	0.004399
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	B.1.258.17	0.000624
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	B.1.311	0.001647
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	B.1.411	0.022222
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	B.1.525	0.000679
ORF1ab/nsp3	1412	I1412V	Ata	Gta	6	6	B.1.617.2	0.000023
ORF1ab/nsp3	1412	I1412del	ATA	---	6	6	B.1.617.2	0.000023
ORF1ab/nsp3	1412	I1412T	aTa	aCa	6	6	R.1	0.00054
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5	5	AY.25	0.00003
ORF1ab/nsp3	1412	I1412V	Ata	Gta	5	5	AY.39	0.000124
ORF1ab/nsp3	1412	I1412del	ATA	---	5	5	AY.44	0.00003
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5	5	AY.45	0.000608
ORF1ab/nsp3	1412	I1412K	aTa	aAa	5	5	B.1.1.7	0.000004
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5	5	B.1.1.70	0.001705
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5	5	B.1.234	0.00066
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5	5	B.1.389	0.00501
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5	5	B.1.409	0.003906
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5	5	B.1.621	0.000443
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5	5	C.37	0.00058
ORF1ab/nsp3	1412	I1412T	aTa	aCa	5	5	P.1.12	0.00242
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	A	0.001548
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	AY.118	0.000251
ORF1ab/nsp3	1412	I1412del2	ATa	--a	4	4	AY.4	0.000006
ORF1ab/nsp3	1412	I1412del	ATA	---	4	4	AY.43	0.000018
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	AZ.2	0.003284
ORF1ab/nsp3	1412	I1412I	atA	atT	3	4	B.1	0.000027
ORF1ab/nsp3	1412	I1412I	atA	atC	1	4	B.1	0.000009
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	B.1.1.317	0.001647
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	B.1.1.39	0.002039
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	B.1.177.12	0.000607
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	B.1.243	0.000278
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	B.1.369	0.001141
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	B.1.396	0.002823
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	B.1.533	0.038462
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	B.1.564	0.001704
ORF1ab/nsp3	1412	I1412M	atA	atG	4	4	B.1.595	0.001044
ORF1ab/nsp3	1412	I1412T	aTa	aCa	4	4	B.1.599	0.014599
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3		0.166667
ORF1ab/nsp3	1412	I1412R	aTa	aGa	3	3	All	0.000001
ORF1ab/nsp3	1412	I1412V	Ata	Gta	3	3	AY.103	0.000019
ORF1ab/nsp3	1412	I1412V	Ata	Gta	3	3	AY.116	0.00086
ORF1ab/nsp3	1412	I1412V	Ata	Gta	3	3	AY.120	0.000112
ORF1ab/nsp3	1412	I1412V	Ata	Gta	3	3	AY.16	0.001139
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	AY.23	0.000209
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	AY.3	0.00003
ORF1ab/nsp3	1412	I1412del	ATA	---	3	3	AY.4.5	0.000322
ORF1ab/nsp3	1412	I1412V	Ata	Gta	3	3	AY.44	0.000018
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	AY.52	0.002443
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	AY.6	0.000123
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	AY.75	0.000168
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	AY.92	0.000862
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	AY.98	0.000237
ORF1ab/nsp3	1412	I1412L	Ata	Tta	3	3	B.1	0.000027
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.1.10	0.003344
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.1.214	0.000166
ORF1ab/nsp3	1412	I1412V	Ata	Gta	3	3	B.1.1.25	0.001706
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.1.28	0.000934
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.1.318	0.000905
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.1.37	0.000579
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.1.389	0.018182
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.1.63	0.001157
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.170	0.012931
ORF1ab/nsp3	1412	I1412M	atA	atG	3	3	B.1.177	0.00004
ORF1ab/nsp3	1412	I1412M	atA	atG	3	3	B.1.2	0.000026
ORF1ab/nsp3	1412	I1412del	ATA	---	3	3	B.1.221	0.000213
ORF1ab/nsp3	1412	I1412M	atA	atG	3	3	B.1.243	0.000209
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.324	0.004815
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.524	0.004219
ORF1ab/nsp3	1412	I1412del	ATA	---	3	3	B.1.596	0.000261
ORF1ab/nsp3	1412	I1412K	aTa	aAa	3	3	B.1.617.1	0.000387
ORF1ab/nsp3	1412	I1412L	Ata	Tta	2	3	B.1.617.2	0.000008
ORF1ab/nsp3	1412	I1412L	Ata	Cta	1	3	B.1.617.2	0.000004
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.625	0.007059
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.1.633	0.125
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	B.3.1	0.004975
ORF1ab/nsp3	1412	I1412T	aTa	aCa	3	3	P.1.13	0.002695
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	A.27	0.003311
ORF1ab/nsp3	1412	I1412X	ATa	TAa	2	2	All	0
ORF1ab/nsp3	1412	I1412N	aTA	aAC	1	2	All	0
ORF1ab/nsp3	1412	I1412N	aTA	aAT	1	2	All	0
ORF1ab/nsp3	1412	I1412V	Ata	Gta	2	2	AY.102	0.000053
ORF1ab/nsp3	1412	I1412del	ATA	---	2	2	AY.103	0.000012
ORF1ab/nsp3	1412	I1412L	Ata	Tta	2	2	AY.103	0.000012
ORF1ab/nsp3	1412	I1412V	Ata	Gta	2	2	AY.4.2	0.000043
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	AY.46	0.000208
ORF1ab/nsp3	1412	I1412V	Ata	Gta	2	2	AY.46.4	0.000329
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	AY.68	0.000547
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	AY.7.1	0.000225
ORF1ab/nsp3	1412	I1412K	aTa	aAa	2	2	B.1	0.000018
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.1.1	0.000653
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.1.148	0.017544
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.1.304	0.005618
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.1.370	0.025316
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.1.417	0.005405
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.1.464	0.002946
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.1.523	0.003125
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.1.525	0.010929
ORF1ab/nsp3	1412	I1412del2	ATa	--a	1	2	B.1.1.7	0.000001
ORF1ab/nsp3	1412	I1412del2	aTA	a--	1	2	B.1.1.7	0.000001
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.160.16	0.001859
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.177.42	0.001789
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.177.54	0.001213
ORF1ab/nsp3	1412	I1412del1	atA	at-	2	2	B.1.2	0.000018
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.237	0.00995
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.239	0.002442
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.241	0.001623
ORF1ab/nsp3	1412	I1412del	ATA	---	2	2	B.1.258	0.000133
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.258.14	0.001961
ORF1ab/nsp3	1412	I1412del	ATA	---	2	2	B.1.311	0.000549
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.349	0.00143
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.351.5	0.001199
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.36	0.000292
ORF1ab/nsp3	1412	I1412V	Ata	Gta	2	2	B.1.400	0.000858
ORF1ab/nsp3	1412	I1412M	atA	atG	2	2	B.1.427	0.000101
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.497	0.00063
ORF1ab/nsp3	1412	I1412del	ATA	---	2	2	B.1.517	0.000854
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.517	0.000854
ORF1ab/nsp3	1412	I1412del	ATA	---	2	2	B.1.525	0.000226
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.561	0.000794
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.565	0.001621
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.575.1	0.004878
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.620	0.001892
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.621.1	0.001012
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	B.1.627	0.00404
ORF1ab/nsp3	1412	I1412del	ATA	---	2	2	P.1	0.000032
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	P.1.10	0.000539
ORF1ab/nsp3	1412	I1412T	aTa	aCa	2	2	P.1.15	0.000465
ORF1ab/nsp3	1412	I1412del	ATA	---	2	2	U.3	0.007722
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	A.2	0.000662
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	A.2.4	0.003367
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	A.2.5	0.000499
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	A.28	0.002646
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	A.3	0.002096
ORF1ab/nsp3	1412	I1412Y	ATA	TAT	1	1	All	0
ORF1ab/nsp3	1412	I1412F	AtA	TtT	1	1	All	0
ORF1ab/nsp3	1412	I1412P	ATa	CCa	1	1	All	0
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AT.1	0.005128
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.100	0.000046
ORF1ab/nsp3	1412	I1412L	Ata	Cta	1	1	AY.100	0.000046
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.107	0.000466
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	AY.113	0.000142
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.113	0.000142
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	AY.120	0.000037
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.121	0.000135
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.19	0.00114
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.2	0.000356
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.20	0.000039
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	AY.20	0.000039
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	AY.23	0.00007
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	AY.23	0.00007
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.24	0.000431
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	AY.24	0.000431
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	AY.24	0.000431
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.27	0.000065
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	AY.3	0.00001
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	AY.3	0.00001
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.34	0.000097
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	AY.36	0.000148
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	AY.39	0.000025
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1412	I1412del1	Ata	-ta	1	1	AY.4	0.000002
ORF1ab/nsp3	1412	I1412L	Ata	Tta	1	1	AY.4	0.000002
ORF1ab/nsp3	1412	I1412I	atA	atT	1	1	AY.4	0.000002
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	AY.4	0.000002
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.4.2.1	0.000149
ORF1ab/nsp3	1412	I1412L	Ata	Tta	1	1	AY.43	0.000004
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	AY.43	0.000004
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	AY.46.4	0.000165
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	AY.47	0.000031
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	AY.48	0.000465
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.48	0.000465
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	AY.5	0.000021
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.5.4	0.000277
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.53	0.000288
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.54	0.000095
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	AY.54	0.000095
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.55	0.000917
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.58	0.000907
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	AY.61	0.000105
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.61	0.000105
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.62	0.000436
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.65	0.000533
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.67	0.000464
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.69	0.000187
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	AY.7.1	0.000113
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.70	0.000209
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	AY.71	0.000475
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	AY.73	0.000665
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	AY.73	0.000665
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	AY.75	0.000056
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.75.1	0.00018
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.84	0.000437
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.85	0.000427
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.9	0.000068
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.90	0.000684
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.95	0.000761
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	AY.98.1	0.000048
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AY.98.1	0.000048
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	AZ.3	0.00152
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B	0.000128
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	B.1	0.000009
ORF1ab/nsp3	1412	I1412del1	Ata	-ta	1	1	B.1	0.000009
ORF1ab/nsp3	1412	I1412X	ATa	TAa	1	1	B.1	0.000009
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	B.1.1	0.000018
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	B.1.1	0.000018
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.135	0.004695
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.162	0.029412
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.169	0.018182
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.171	0.003676
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.187	0.00885
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.189	0.001513
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.1.192	0.002309
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	B.1.1.222	0.000204
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.231	0.003096
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.1.236	0.006897
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.236	0.006897
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.241	0.00207
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.263	0.001558
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.291	0.000742
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.294	0.001266
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.301	0.001179
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.302	0.002075
ORF1ab/nsp3	1412	I1412R	aTa	aGa	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.1.312	0.001912
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.1.315	0.008475
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.326	0.001761
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.374	0.002375
ORF1ab/nsp3	1412	I1412R	aTa	aGa	1	1	B.1.1.39	0.00051
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.402	0.011111
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	B.1.1.423	0.0625
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.424	0.045455
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.434	0.000349
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.437	0.010417
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.440	0.011765
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.448	0.002033
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.462	0.008621
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.50	0.000679
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.524	0.020833
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.526	0.003546
ORF1ab/nsp3	1412	I1412I	atA	atT	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1412	I1412N	aTA	aAC	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1412	I1412P	ATa	CCa	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.1.83	0.00271
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.160.14	0.002119
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.160.23	0.004831
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.160.7	0.002079
ORF1ab/nsp3	1412	I1412R	aTa	aGa	1	1	B.1.177	0.000013
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.15	0.000631
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.15	0.000631
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.19	0.001431
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.19	0.001431
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.31	0.011494
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.44	0.000519
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.51	0.004566
ORF1ab/nsp3	1412	I1412del1	Ata	-ta	1	1	B.1.177.54	0.000606
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.56	0.000668
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.57	0.000281
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.58	0.001332
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.6	0.000977
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.60	0.000218
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.62	0.001192
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.67	0.007634
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.72	0.00339
ORF1ab/nsp3	1412	I1412del1	Ata	-ta	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.82	0.000477
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.87	0.000728
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	B.1.2	0.000009
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	B.1.2	0.000009
ORF1ab/nsp3	1412	I1412I	atA	atT	1	1	B.1.2	0.000009
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.205	0.02381
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.214	0.003663
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.214.2	0.0006
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.214.3	0.007143
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	B.1.221	0.000071
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	B.1.236	0.002053
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.240	0.000216
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	B.1.258	0.000067
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.258.10	0.011364
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.258.3	0.001675
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.265	0.001271
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.301	0.005917
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.351	0.00003
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.351.3	0.000876
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	B.1.36	0.000146
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.36.1	0.00114
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.36.10	0.004785
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.36.22	0.001208
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.36.22	0.001208
ORF1ab/nsp3	1412	I1412del1	atA	at-	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.36.31	0.001751
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.36.38	0.001642
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.361	0.001289
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	B.1.367	0.000792
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.377	0.004566
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.389	0.001002
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.397	0.004854
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.399	0.001934
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	B.1.415	0.014286
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.415.1	0.007576
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.432	0.011236
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.433	0.003195
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.445	0.011765
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.469	0.00361
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.470	0.001404
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.473	0.019231
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	B.1.497	0.000315
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.505	0.004386
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.523	0.002451
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	B.1.525	0.000113
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.527	0.003704
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.540	0.009709
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.558	0.004566
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.575	0.000303
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.575.2	0.004808
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.577	0.000687
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.582	0.000491
ORF1ab/nsp3	1412	I1412L	Ata	Tta	1	1	B.1.589	0.007576
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.590	0.004545
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	B.1.599	0.00365
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.606	0.006024
ORF1ab/nsp3	1412	I1412F	AtA	TtT	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1412	I1412Y	ATA	TAT	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1412	I1412L	Ata	Tta	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1412	I1412I	atA	atT	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1412	I1412del1	aTa	a-a	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1412	I1412N	aTA	aAT	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1412	I1412X	ATa	TAa	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1412	I1412I	atA	atC	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.619.1	0.000641
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.630	0.005236
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.634	0.003425
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.636	0.006711
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.1.637	0.000073
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	B.1.637	0.000073
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.9.5	0.005682
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.1.94	0.027027
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	B.40	0.000364
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.55	0.00295
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	B.6	0.00091
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	B.6	0.00091
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	C.35	0.000774
ORF1ab/nsp3	1412	I1412K	aTa	aAa	1	1	C.35	0.000774
ORF1ab/nsp3	1412	I1412I	atA	atC	1	1	C.35	0.000774
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	C.36	0.000911
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	C.36.3.1	0.002717
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	C.38	0.008065
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	D.2	0.000075
ORF1ab/nsp3	1412	I1412L	Ata	Tta	1	1	D.2	0.000075
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	N.5	0.001767
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	P.1	0.000016
ORF1ab/nsp3	1412	I1412M	atA	atG	1	1	P.1	0.000016
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	P.1.10.1	0.00813
ORF1ab/nsp3	1412	I1412V	Ata	Gta	1	1	P.1.15	0.000232
ORF1ab/nsp3	1412	I1412del	ATA	---	1	1	P.1.15	0.000232
ORF1ab/nsp3	1412	I1412T	aTa	aCa	1	1	P.3	0.001595
ORF1ab/nsp3	1412	I1412L	Ata	Tta	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.