CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1412

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31412I1412TI2230TnonsynaTaaCa112245311224270.9999776953-6955
ORF1ab/nsp31412I1412TI2230TnonsynaTAaCC1122453160.00001425456953-6955
ORF1ab/nsp31412I1412TI2230TnonsynaTAaCG112245390.000008018156953-6955
ORF1ab/nsp31412I1412TI2230TnonsynaTAaCT112245310.0000008909066953-6955
ORF1ab/nsp31412I1412MI2230MnonsynatAatG27827816953-6955
ORF1ab/nsp31412I1412delI2230deldelATA---23223216953-6955
ORF1ab/nsp31412I1412VI2230VnonsynAtaGta10110116953-6955
ORF1ab/nsp31412I1412LI2230LnonsynAtaTta23210.9130436953-6955
ORF1ab/nsp31412I1412LI2230LnonsynAtaCta2320.08695656953-6955
ORF1ab/nsp31412I1412KI2230KnonsynaTaaAa202016953-6955
ORF1ab/nsp31412I1412II2230IsynatAatT1070.76953-6955
ORF1ab/nsp31412I1412II2230IsynatAatC1030.36953-6955
ORF1ab/nsp31412I1412del1I2230del1delAta-ta840.56953-6955
ORF1ab/nsp31412I1412del1I2230del1delatAat-830.3756953-6955
ORF1ab/nsp31412I1412del1I2230del1delaTaa-a810.1256953-6955
ORF1ab/nsp31412I1412AI2230AnonsynATaGCa6616953-6955
ORF1ab/nsp31412I1412del2I2230del2delATa--a650.8333336953-6955
ORF1ab/nsp31412I1412del2I2230del2delaTAa--610.1666676953-6955
ORF1ab/nsp31412I1412RI2230RnonsynaTaaGa3316953-6955
ORF1ab/nsp31412I1412XI2230XnonsynATaTAa2216953-6955
ORF1ab/nsp31412I1412NI2230NnonsynaTAaAT210.56953-6955
ORF1ab/nsp31412I1412NI2230NnonsynaTAaAC210.56953-6955
ORF1ab/nsp31412I1412PI2230PnonsynATaCCa1116953-6955
ORF1ab/nsp31412I1412YI2230YnonsynATATAT1116953-6955
ORF1ab/nsp31412I1412FI2230FnonsynAtATtT1116953-6955

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31412I1412TaTaaCa11224271122453All0.214677
ORF1ab/nsp31412I1412TaTAaCC161122453All0.000003
ORF1ab/nsp31412I1412TaTAaCG91122453All0.000002
ORF1ab/nsp31412I1412TaTAaCT11122453All0
ORF1ab/nsp31412I1412TaTaaCa10908311090856B.1.1.70.976537
ORF1ab/nsp31412I1412TaTAaCC161090856B.1.1.70.000014
ORF1ab/nsp31412I1412TaTAaCG81090856B.1.1.70.000007
ORF1ab/nsp31412I1412TaTAaCT11090856B.1.1.70.000001
ORF1ab/nsp31412I1412TaTaaCa77467746Q.10.978525
ORF1ab/nsp31412I1412TaTaaCa66306630Q.30.961566
ORF1ab/nsp31412I1412TaTaaCa59275927Q.80.977408
ORF1ab/nsp31412I1412TaTaaCa29092910B.1.10.052772
ORF1ab/nsp31412I1412TaTAaCG12910B.1.10.000018
ORF1ab/nsp31412I1412TaTaaCa20742074Q.40.943156
ORF1ab/nsp31412I1412TaTaaCa14791479Q.20.907362
ORF1ab/nsp31412I1412TaTaaCa14191419B.10.012997
ORF1ab/nsp31412I1412TaTaaCa890890Q.70.988889
ORF1ab/nsp31412I1412MatAatG278278All0.000053
ORF1ab/nsp31412I1412delATA---232232All0.000044
ORF1ab/nsp31412I1412MatAatG222222AY.1020.005886
ORF1ab/nsp31412I1412TaTaaCa182182B.1.177.730.103058
ORF1ab/nsp31412I1412TaTaaCa153153AY.100.081081
ORF1ab/nsp31412I1412TaTaaCa148148Q.60.980132
ORF1ab/nsp31412I1412TaTaaCa133133B.1.3750.109016
ORF1ab/nsp31412I1412TaTaaCa106106B.1.177.210.008106
ORF1ab/nsp31412I1412VAtaGta101101All0.000019
ORF1ab/nsp31412I1412TaTaaCa9898B.1.1770.00129
ORF1ab/nsp31412I1412TaTaaCa9090B.1.20.000792
ORF1ab/nsp31412I1412delATA---7676B.1.1.70.000068
ORF1ab/nsp31412I1412TaTaaCa7575B.1.5260.001763
ORF1ab/nsp31412I1412TaTaaCa5858Q.50.983051
ORF1ab/nsp31412I1412TaTaaCa5555B.1.1.2050.204461
ORF1ab/nsp31412I1412TaTaaCa5454B.1.2210.003836
ORF1ab/nsp31412I1412TaTaaCa5353B.1.5760.048051
ORF1ab/nsp31412I1412TaTaaCa5252B.1.617.20.000196
ORF1ab/nsp31412I1412TaTaaCa5050P.10.000788
ORF1ab/nsp31412I1412TaTaaCa4949AY.4.20.001063
ORF1ab/nsp31412I1412TaTaaCa4343B.1.5960.003747
ORF1ab/nsp31412I1412TaTaaCa4141B.1.1.4090.116147
ORF1ab/nsp31412I1412TaTaaCa3939AY.330.002604
ORF1ab/nsp31412I1412TaTaaCa3636B.1.177.70.005935
ORF1ab/nsp31412I1412TaTaaCa3131AY.430.000137
ORF1ab/nsp31412I1412TaTaaCa2828B.1.3510.000832
ORF1ab/nsp31412I1412TaTaaCa2626B0.003323
ORF1ab/nsp31412I1412TaTaaCa2626B.1.1.5070.226087
ORF1ab/nsp31412I1412TaTaaCa2626P.1.10.008259
ORF1ab/nsp31412I1412TaTaaCa2424AY.440.000146
ORF1ab/nsp31412I1412LAtaTta2123All0.000004
ORF1ab/nsp31412I1412LAtaCta223All0
ORF1ab/nsp31412I1412TaTaaCa2323B.1.4290.000541
ORF1ab/nsp31412I1412TaTaaCa2222B.1.2580.001464
ORF1ab/nsp31412I1412TaTaaCa2222B.1.5750.006675
ORF1ab/nsp31412I1412TaTaaCa2121B.1.1.5190.000834
ORF1ab/nsp31412I1412TaTaaCa2121B.1.6230.011266
ORF1ab/nsp31412I1412KaTaaAa2020All0.000004
ORF1ab/nsp31412I1412delATA---1919AY.40.00003
ORF1ab/nsp31412I1412TaTaaCa1818B.1.1.2200.033457
ORF1ab/nsp31412I1412TaTaaCa1818B.1.1600.000561
ORF1ab/nsp31412I1412TaTaaCa1818B.1.6090.008629
ORF1ab/nsp31412I1412TaTaaCa1717B.1.1.1610.060071
ORF1ab/nsp31412I1412MatAatG1717B.1.3460.02228
ORF1ab/nsp31412I1412TaTaaCa1717B.1.4270.000858
ORF1ab/nsp31412I1412TaTaaCa1616AY.260.000453
ORF1ab/nsp31412I1412TaTaaCa1616AY.390.000395
ORF1ab/nsp31412I1412TaTaaCa1616AY.40.000025
ORF1ab/nsp31412I1412delATA---1616B.1.1770.000211
ORF1ab/nsp31412I1412TaTaaCa1414B.1.5950.003653
ORF1ab/nsp31412I1412delATA---1313B.10.000119
ORF1ab/nsp31412I1412TaTaaCa1313B.1.1.5280.0625
ORF1ab/nsp31412I1412TaTaaCa1313B.1.6370.00095
ORF1ab/nsp31412I1412TaTaaCa1212B.1.1.3120.022945
ORF1ab/nsp31412I1412TaTaaCa1212P.1.160.004489
ORF1ab/nsp31412I1412delATA---1111B.1.20.000097
ORF1ab/nsp31412I1412IatAatT710All0.000001
ORF1ab/nsp31412I1412IatAatC310All0.000001
ORF1ab/nsp31412I1412TaTaaCa1010AY.1200.000372
ORF1ab/nsp31412I1412TaTaaCa1010B.1.5800.04065
ORF1ab/nsp31412I1412TaTaaCa1010C.36.30.005672
ORF1ab/nsp31412I1412TaTaaCa99AY.300.003562
ORF1ab/nsp31412I1412TaTaaCa99AY.420.000362
ORF1ab/nsp31412I1412TaTaaCa99B.1.1570.026866
ORF1ab/nsp31412I1412del1Ata-ta48All0.000001
ORF1ab/nsp31412I1412del1atAat-38All0.000001
ORF1ab/nsp31412I1412del1aTaa-a18All0
ORF1ab/nsp31412I1412MatAatG88AY.1030.00005
ORF1ab/nsp31412I1412VAtaGta88AY.250.000048
ORF1ab/nsp31412I1412LAtaTta88AY.300.003166
ORF1ab/nsp31412I1412VAtaGta88AY.430.000035
ORF1ab/nsp31412I1412delATA---88B.1.10.000145
ORF1ab/nsp31412I1412TaTaaCa88B.1.177.860.001468
ORF1ab/nsp31412I1412VAtaGta88B.1.6210.000708
ORF1ab/nsp31412I1412TaTaaCa88B.1.6280.002819
ORF1ab/nsp31412I1412TaTaaCa88P.1.170.001294
ORF1ab/nsp31412I1412VAtaGta77AY.140.000616
ORF1ab/nsp31412I1412VAtaGta77AY.40.000011
ORF1ab/nsp31412I1412TaTaaCa77AY.590.003708
ORF1ab/nsp31412I1412TaTaaCa77B.1.177.40.001477
ORF1ab/nsp31412I1412TaTaaCa77B.1.2060.00571
ORF1ab/nsp31412I1412TaTaaCa77B.1.617.10.000903
ORF1ab/nsp31412I1412TaTaaCa77C.10.016746
ORF1ab/nsp31412I1412delATA---660.333333
ORF1ab/nsp31412I1412AATaGCa66All0.000001
ORF1ab/nsp31412I1412del2ATa--a56All0.000001
ORF1ab/nsp31412I1412del2aTAa--16All0
ORF1ab/nsp31412I1412TaTaaCa66AY.1020.000159
ORF1ab/nsp31412I1412TaTaaCa66AY.1030.000037
ORF1ab/nsp31412I1412TaTaaCa66AY.1190.000212
ORF1ab/nsp31412I1412TaTaaCa66AY.290.000095
ORF1ab/nsp31412I1412TaTaaCa66AY.470.000187
ORF1ab/nsp31412I1412VAtaGta66AY.50.000124
ORF1ab/nsp31412I1412TaTaaCa66AY.9.20.00022
ORF1ab/nsp31412I1412AATaGCa66B.1.1.70.000005
ORF1ab/nsp31412I1412TaTaaCa66B.1.1390.004399
ORF1ab/nsp31412I1412TaTaaCa66B.1.258.170.000624
ORF1ab/nsp31412I1412TaTaaCa66B.1.3110.001647
ORF1ab/nsp31412I1412TaTaaCa66B.1.4110.022222
ORF1ab/nsp31412I1412TaTaaCa66B.1.5250.000679
ORF1ab/nsp31412I1412VAtaGta66B.1.617.20.000023
ORF1ab/nsp31412I1412delATA---66B.1.617.20.000023
ORF1ab/nsp31412I1412TaTaaCa66R.10.00054
ORF1ab/nsp31412I1412TaTaaCa55AY.250.00003
ORF1ab/nsp31412I1412VAtaGta55AY.390.000124
ORF1ab/nsp31412I1412delATA---55AY.440.00003
ORF1ab/nsp31412I1412TaTaaCa55AY.450.000608
ORF1ab/nsp31412I1412KaTaaAa55B.1.1.70.000004
ORF1ab/nsp31412I1412TaTaaCa55B.1.1.700.001705
ORF1ab/nsp31412I1412TaTaaCa55B.1.2340.00066
ORF1ab/nsp31412I1412TaTaaCa55B.1.3890.00501
ORF1ab/nsp31412I1412TaTaaCa55B.1.4090.003906
ORF1ab/nsp31412I1412TaTaaCa55B.1.6210.000443
ORF1ab/nsp31412I1412TaTaaCa55C.370.00058
ORF1ab/nsp31412I1412TaTaaCa55P.1.120.00242
ORF1ab/nsp31412I1412TaTaaCa44A0.001548
ORF1ab/nsp31412I1412TaTaaCa44AY.1180.000251
ORF1ab/nsp31412I1412del2ATa--a44AY.40.000006
ORF1ab/nsp31412I1412delATA---44AY.430.000018
ORF1ab/nsp31412I1412TaTaaCa44AZ.20.003284
ORF1ab/nsp31412I1412IatAatT34B.10.000027
ORF1ab/nsp31412I1412IatAatC14B.10.000009
ORF1ab/nsp31412I1412TaTaaCa44B.1.1.3170.001647
ORF1ab/nsp31412I1412TaTaaCa44B.1.1.390.002039
ORF1ab/nsp31412I1412TaTaaCa44B.1.177.120.000607
ORF1ab/nsp31412I1412TaTaaCa44B.1.2430.000278
ORF1ab/nsp31412I1412TaTaaCa44B.1.3690.001141
ORF1ab/nsp31412I1412TaTaaCa44B.1.3960.002823
ORF1ab/nsp31412I1412TaTaaCa44B.1.5330.038462
ORF1ab/nsp31412I1412TaTaaCa44B.1.5640.001704
ORF1ab/nsp31412I1412MatAatG44B.1.5950.001044
ORF1ab/nsp31412I1412TaTaaCa44B.1.5990.014599
ORF1ab/nsp31412I1412TaTaaCa330.166667
ORF1ab/nsp31412I1412RaTaaGa33All0.000001
ORF1ab/nsp31412I1412VAtaGta33AY.1030.000019
ORF1ab/nsp31412I1412VAtaGta33AY.1160.00086
ORF1ab/nsp31412I1412VAtaGta33AY.1200.000112
ORF1ab/nsp31412I1412VAtaGta33AY.160.001139
ORF1ab/nsp31412I1412TaTaaCa33AY.230.000209
ORF1ab/nsp31412I1412TaTaaCa33AY.30.00003
ORF1ab/nsp31412I1412delATA---33AY.4.50.000322
ORF1ab/nsp31412I1412VAtaGta33AY.440.000018
ORF1ab/nsp31412I1412TaTaaCa33AY.520.002443
ORF1ab/nsp31412I1412TaTaaCa33AY.60.000123
ORF1ab/nsp31412I1412TaTaaCa33AY.750.000168
ORF1ab/nsp31412I1412TaTaaCa33AY.920.000862
ORF1ab/nsp31412I1412TaTaaCa33AY.980.000237
ORF1ab/nsp31412I1412LAtaTta33B.10.000027
ORF1ab/nsp31412I1412TaTaaCa33B.1.1.100.003344
ORF1ab/nsp31412I1412TaTaaCa33B.1.1.2140.000166
ORF1ab/nsp31412I1412VAtaGta33B.1.1.250.001706
ORF1ab/nsp31412I1412TaTaaCa33B.1.1.280.000934
ORF1ab/nsp31412I1412TaTaaCa33B.1.1.3180.000905
ORF1ab/nsp31412I1412TaTaaCa33B.1.1.370.000579
ORF1ab/nsp31412I1412TaTaaCa33B.1.1.3890.018182
ORF1ab/nsp31412I1412TaTaaCa33B.1.1.630.001157
ORF1ab/nsp31412I1412TaTaaCa33B.1.1700.012931
ORF1ab/nsp31412I1412MatAatG33B.1.1770.00004
ORF1ab/nsp31412I1412MatAatG33B.1.20.000026
ORF1ab/nsp31412I1412delATA---33B.1.2210.000213
ORF1ab/nsp31412I1412MatAatG33B.1.2430.000209
ORF1ab/nsp31412I1412TaTaaCa33B.1.3240.004815
ORF1ab/nsp31412I1412TaTaaCa33B.1.5240.004219
ORF1ab/nsp31412I1412delATA---33B.1.5960.000261
ORF1ab/nsp31412I1412KaTaaAa33B.1.617.10.000387
ORF1ab/nsp31412I1412LAtaTta23B.1.617.20.000008
ORF1ab/nsp31412I1412LAtaCta13B.1.617.20.000004
ORF1ab/nsp31412I1412TaTaaCa33B.1.6250.007059
ORF1ab/nsp31412I1412TaTaaCa33B.1.6330.125
ORF1ab/nsp31412I1412TaTaaCa33B.3.10.004975
ORF1ab/nsp31412I1412TaTaaCa33P.1.130.002695
ORF1ab/nsp31412I1412TaTaaCa22A.270.003311
ORF1ab/nsp31412I1412XATaTAa22All0
ORF1ab/nsp31412I1412NaTAaAC12All0
ORF1ab/nsp31412I1412NaTAaAT12All0
ORF1ab/nsp31412I1412VAtaGta22AY.1020.000053
ORF1ab/nsp31412I1412delATA---22AY.1030.000012
ORF1ab/nsp31412I1412LAtaTta22AY.1030.000012
ORF1ab/nsp31412I1412VAtaGta22AY.4.20.000043
ORF1ab/nsp31412I1412TaTaaCa22AY.460.000208
ORF1ab/nsp31412I1412VAtaGta22AY.46.40.000329
ORF1ab/nsp31412I1412TaTaaCa22AY.680.000547
ORF1ab/nsp31412I1412TaTaaCa22AY.7.10.000225
ORF1ab/nsp31412I1412KaTaaAa22B.10.000018
ORF1ab/nsp31412I1412TaTaaCa22B.1.1.10.000653
ORF1ab/nsp31412I1412TaTaaCa22B.1.1.1480.017544
ORF1ab/nsp31412I1412TaTaaCa22B.1.1.3040.005618
ORF1ab/nsp31412I1412TaTaaCa22B.1.1.3700.025316
ORF1ab/nsp31412I1412TaTaaCa22B.1.1.4170.005405
ORF1ab/nsp31412I1412TaTaaCa22B.1.1.4640.002946
ORF1ab/nsp31412I1412TaTaaCa22B.1.1.5230.003125
ORF1ab/nsp31412I1412TaTaaCa22B.1.1.5250.010929
ORF1ab/nsp31412I1412del2ATa--a12B.1.1.70.000001
ORF1ab/nsp31412I1412del2aTAa--12B.1.1.70.000001
ORF1ab/nsp31412I1412TaTaaCa22B.1.160.160.001859
ORF1ab/nsp31412I1412TaTaaCa22B.1.177.420.001789
ORF1ab/nsp31412I1412TaTaaCa22B.1.177.540.001213
ORF1ab/nsp31412I1412del1atAat-22B.1.20.000018
ORF1ab/nsp31412I1412TaTaaCa22B.1.2370.00995
ORF1ab/nsp31412I1412TaTaaCa22B.1.2390.002442
ORF1ab/nsp31412I1412TaTaaCa22B.1.2410.001623
ORF1ab/nsp31412I1412delATA---22B.1.2580.000133
ORF1ab/nsp31412I1412TaTaaCa22B.1.258.140.001961
ORF1ab/nsp31412I1412delATA---22B.1.3110.000549
ORF1ab/nsp31412I1412TaTaaCa22B.1.3490.00143
ORF1ab/nsp31412I1412TaTaaCa22B.1.351.50.001199
ORF1ab/nsp31412I1412TaTaaCa22B.1.360.000292
ORF1ab/nsp31412I1412VAtaGta22B.1.4000.000858
ORF1ab/nsp31412I1412MatAatG22B.1.4270.000101
ORF1ab/nsp31412I1412TaTaaCa22B.1.4970.00063
ORF1ab/nsp31412I1412delATA---22B.1.5170.000854
ORF1ab/nsp31412I1412TaTaaCa22B.1.5170.000854
ORF1ab/nsp31412I1412delATA---22B.1.5250.000226
ORF1ab/nsp31412I1412TaTaaCa22B.1.5610.000794
ORF1ab/nsp31412I1412TaTaaCa22B.1.5650.001621
ORF1ab/nsp31412I1412TaTaaCa22B.1.575.10.004878
ORF1ab/nsp31412I1412TaTaaCa22B.1.6200.001892
ORF1ab/nsp31412I1412TaTaaCa22B.1.621.10.001012
ORF1ab/nsp31412I1412TaTaaCa22B.1.6270.00404
ORF1ab/nsp31412I1412delATA---22P.10.000032
ORF1ab/nsp31412I1412TaTaaCa22P.1.100.000539
ORF1ab/nsp31412I1412TaTaaCa22P.1.150.000465
ORF1ab/nsp31412I1412delATA---22U.30.007722
ORF1ab/nsp31412I1412TaTaaCa11A.20.000662
ORF1ab/nsp31412I1412delATA---11A.2.40.003367
ORF1ab/nsp31412I1412TaTaaCa11A.2.50.000499
ORF1ab/nsp31412I1412delATA---11A.280.002646
ORF1ab/nsp31412I1412KaTaaAa11A.30.002096
ORF1ab/nsp31412I1412YATATAT11All0
ORF1ab/nsp31412I1412FAtATtT11All0
ORF1ab/nsp31412I1412PATaCCa11All0
ORF1ab/nsp31412I1412TaTaaCa11AT.10.005128
ORF1ab/nsp31412I1412TaTaaCa11AY.1000.000046
ORF1ab/nsp31412I1412LAtaCta11AY.1000.000046
ORF1ab/nsp31412I1412TaTaaCa11AY.1070.000466
ORF1ab/nsp31412I1412MatAatG11AY.1130.000142
ORF1ab/nsp31412I1412TaTaaCa11AY.1130.000142
ORF1ab/nsp31412I1412delATA---11AY.1200.000037
ORF1ab/nsp31412I1412TaTaaCa11AY.1210.000135
ORF1ab/nsp31412I1412TaTaaCa11AY.190.00114
ORF1ab/nsp31412I1412TaTaaCa11AY.20.000356
ORF1ab/nsp31412I1412TaTaaCa11AY.200.000039
ORF1ab/nsp31412I1412VAtaGta11AY.200.000039
ORF1ab/nsp31412I1412MatAatG11AY.230.00007
ORF1ab/nsp31412I1412VAtaGta11AY.230.00007
ORF1ab/nsp31412I1412TaTaaCa11AY.240.000431
ORF1ab/nsp31412I1412delATA---11AY.240.000431
ORF1ab/nsp31412I1412MatAatG11AY.240.000431
ORF1ab/nsp31412I1412TaTaaCa11AY.270.000065
ORF1ab/nsp31412I1412VAtaGta11AY.30.00001
ORF1ab/nsp31412I1412MatAatG11AY.30.00001
ORF1ab/nsp31412I1412TaTaaCa11AY.340.000097
ORF1ab/nsp31412I1412delATA---11AY.360.000148
ORF1ab/nsp31412I1412MatAatG11AY.390.000025
ORF1ab/nsp31412I1412delATA---11AY.39.10.00004
ORF1ab/nsp31412I1412TaTaaCa11AY.39.10.00004
ORF1ab/nsp31412I1412del1Ata-ta11AY.40.000002
ORF1ab/nsp31412I1412LAtaTta11AY.40.000002
ORF1ab/nsp31412I1412IatAatT11AY.40.000002
ORF1ab/nsp31412I1412MatAatG11AY.40.000002
ORF1ab/nsp31412I1412TaTaaCa11AY.4.2.10.000149
ORF1ab/nsp31412I1412LAtaTta11AY.430.000004
ORF1ab/nsp31412I1412MatAatG11AY.430.000004
ORF1ab/nsp31412I1412MatAatG11AY.46.40.000165
ORF1ab/nsp31412I1412delATA---11AY.470.000031
ORF1ab/nsp31412I1412VAtaGta11AY.480.000465
ORF1ab/nsp31412I1412TaTaaCa11AY.480.000465
ORF1ab/nsp31412I1412delATA---11AY.50.000021
ORF1ab/nsp31412I1412TaTaaCa11AY.5.40.000277
ORF1ab/nsp31412I1412TaTaaCa11AY.530.000288
ORF1ab/nsp31412I1412TaTaaCa11AY.540.000095
ORF1ab/nsp31412I1412VAtaGta11AY.540.000095
ORF1ab/nsp31412I1412TaTaaCa11AY.550.000917
ORF1ab/nsp31412I1412TaTaaCa11AY.580.000907
ORF1ab/nsp31412I1412delATA---11AY.610.000105
ORF1ab/nsp31412I1412TaTaaCa11AY.610.000105
ORF1ab/nsp31412I1412TaTaaCa11AY.620.000436
ORF1ab/nsp31412I1412TaTaaCa11AY.650.000533
ORF1ab/nsp31412I1412TaTaaCa11AY.670.000464
ORF1ab/nsp31412I1412TaTaaCa11AY.690.000187
ORF1ab/nsp31412I1412VAtaGta11AY.7.10.000113
ORF1ab/nsp31412I1412TaTaaCa11AY.700.000209
ORF1ab/nsp31412I1412VAtaGta11AY.710.000475
ORF1ab/nsp31412I1412delATA---11AY.730.000665
ORF1ab/nsp31412I1412VAtaGta11AY.730.000665
ORF1ab/nsp31412I1412MatAatG11AY.750.000056
ORF1ab/nsp31412I1412TaTaaCa11AY.75.10.00018
ORF1ab/nsp31412I1412TaTaaCa11AY.840.000437
ORF1ab/nsp31412I1412TaTaaCa11AY.850.000427
ORF1ab/nsp31412I1412TaTaaCa11AY.90.000068
ORF1ab/nsp31412I1412delATA---11AY.9.20.000037
ORF1ab/nsp31412I1412TaTaaCa11AY.900.000684
ORF1ab/nsp31412I1412TaTaaCa11AY.950.000761
ORF1ab/nsp31412I1412VAtaGta11AY.98.10.000048
ORF1ab/nsp31412I1412TaTaaCa11AY.98.10.000048
ORF1ab/nsp31412I1412TaTaaCa11AZ.30.00152
ORF1ab/nsp31412I1412delATA---11B0.000128
ORF1ab/nsp31412I1412MatAatG11B.10.000009
ORF1ab/nsp31412I1412del1Ata-ta11B.10.000009
ORF1ab/nsp31412I1412XATaTAa11B.10.000009
ORF1ab/nsp31412I1412KaTaaAa11B.1.10.000018
ORF1ab/nsp31412I1412VAtaGta11B.1.10.000018
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.1350.004695
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.1620.029412
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.1690.018182
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.1710.003676
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.1870.00885
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.1890.001513
ORF1ab/nsp31412I1412delATA---11B.1.1.1920.002309
ORF1ab/nsp31412I1412MatAatG11B.1.1.2220.000204
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.2310.003096
ORF1ab/nsp31412I1412delATA---11B.1.1.2360.006897
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.2360.006897
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.2410.00207
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.250.000569
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.2630.001558
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.2910.000742
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.2940.001266
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.3010.001179
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.3020.002075
ORF1ab/nsp31412I1412RaTaaGa11B.1.1.3060.000438
ORF1ab/nsp31412I1412delATA---11B.1.1.3120.001912
ORF1ab/nsp31412I1412delATA---11B.1.1.3150.008475
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.3260.001761
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.3720.000689
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.3740.002375
ORF1ab/nsp31412I1412RaTaaGa11B.1.1.390.00051
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.4020.011111
ORF1ab/nsp31412I1412delATA---11B.1.1.4090.002833
ORF1ab/nsp31412I1412VAtaGta11B.1.1.4230.0625
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.4240.045455
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.4340.000349
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.4370.010417
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.4400.011765
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.4480.002033
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.4620.008621
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.500.000679
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.5240.020833
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.5260.003546
ORF1ab/nsp31412I1412IatAatT11B.1.1.70.000001
ORF1ab/nsp31412I1412NaTAaAC11B.1.1.70.000001
ORF1ab/nsp31412I1412PATaCCa11B.1.1.70.000001
ORF1ab/nsp31412I1412delATA---11B.1.1.700.000341
ORF1ab/nsp31412I1412MatAatG11B.1.1.700.000341
ORF1ab/nsp31412I1412TaTaaCa11B.1.1.830.00271
ORF1ab/nsp31412I1412TaTaaCa11B.1.160.140.002119
ORF1ab/nsp31412I1412delATA---11B.1.160.230.004831
ORF1ab/nsp31412I1412delATA---11B.1.160.70.002079
ORF1ab/nsp31412I1412RaTaaGa11B.1.1770.000013
ORF1ab/nsp31412I1412delATA---11B.1.177.150.000631
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.150.000631
ORF1ab/nsp31412I1412delATA---11B.1.177.180.00116
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.190.001431
ORF1ab/nsp31412I1412delATA---11B.1.177.190.001431
ORF1ab/nsp31412I1412delATA---11B.1.177.210.000076
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.310.011494
ORF1ab/nsp31412I1412delATA---11B.1.177.40.000211
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.440.000519
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.510.004566
ORF1ab/nsp31412I1412del1Ata-ta11B.1.177.540.000606
ORF1ab/nsp31412I1412delATA---11B.1.177.560.000668
ORF1ab/nsp31412I1412delATA---11B.1.177.570.000281
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.580.001332
ORF1ab/nsp31412I1412delATA---11B.1.177.60.000977
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.60.000977
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.600.000218
ORF1ab/nsp31412I1412delATA---11B.1.177.620.001192
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.670.007634
ORF1ab/nsp31412I1412delATA---11B.1.177.680.015152
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.720.00339
ORF1ab/nsp31412I1412del1Ata-ta11B.1.177.810.000189
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.810.000189
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.820.000477
ORF1ab/nsp31412I1412delATA---11B.1.177.870.000728
ORF1ab/nsp31412I1412TaTaaCa11B.1.177.90.001332
ORF1ab/nsp31412I1412delATA---11B.1.177.90.001332
ORF1ab/nsp31412I1412VAtaGta11B.1.20.000009
ORF1ab/nsp31412I1412KaTaaAa11B.1.20.000009
ORF1ab/nsp31412I1412IatAatT11B.1.20.000009
ORF1ab/nsp31412I1412TaTaaCa11B.1.2050.02381
ORF1ab/nsp31412I1412TaTaaCa11B.1.2140.003663
ORF1ab/nsp31412I1412TaTaaCa11B.1.214.20.0006
ORF1ab/nsp31412I1412TaTaaCa11B.1.214.30.007143
ORF1ab/nsp31412I1412KaTaaAa11B.1.2210.000071
ORF1ab/nsp31412I1412VAtaGta11B.1.2360.002053
ORF1ab/nsp31412I1412TaTaaCa11B.1.2400.000216
ORF1ab/nsp31412I1412VAtaGta11B.1.2580.000067
ORF1ab/nsp31412I1412delATA---11B.1.258.100.011364
ORF1ab/nsp31412I1412TaTaaCa11B.1.258.30.001675
ORF1ab/nsp31412I1412TaTaaCa11B.1.2650.001271
ORF1ab/nsp31412I1412TaTaaCa11B.1.3010.005917
ORF1ab/nsp31412I1412delATA---11B.1.3510.00003
ORF1ab/nsp31412I1412TaTaaCa11B.1.351.30.000876
ORF1ab/nsp31412I1412KaTaaAa11B.1.360.000146
ORF1ab/nsp31412I1412TaTaaCa11B.1.36.10.00114
ORF1ab/nsp31412I1412TaTaaCa11B.1.36.100.004785
ORF1ab/nsp31412I1412TaTaaCa11B.1.36.220.001208
ORF1ab/nsp31412I1412delATA---11B.1.36.220.001208
ORF1ab/nsp31412I1412del1atAat-11B.1.36.290.000517
ORF1ab/nsp31412I1412KaTaaAa11B.1.36.290.000517
ORF1ab/nsp31412I1412TaTaaCa11B.1.36.310.001751
ORF1ab/nsp31412I1412delATA---11B.1.36.380.001642
ORF1ab/nsp31412I1412TaTaaCa11B.1.3610.001289
ORF1ab/nsp31412I1412VAtaGta11B.1.3670.000792
ORF1ab/nsp31412I1412TaTaaCa11B.1.3770.004566
ORF1ab/nsp31412I1412delATA---11B.1.3890.001002
ORF1ab/nsp31412I1412TaTaaCa11B.1.3970.004854
ORF1ab/nsp31412I1412TaTaaCa11B.1.3990.001934
ORF1ab/nsp31412I1412KaTaaAa11B.1.4150.014286
ORF1ab/nsp31412I1412TaTaaCa11B.1.415.10.007576
ORF1ab/nsp31412I1412delATA---11B.1.416.10.001563
ORF1ab/nsp31412I1412TaTaaCa11B.1.4320.011236
ORF1ab/nsp31412I1412TaTaaCa11B.1.4330.003195
ORF1ab/nsp31412I1412TaTaaCa11B.1.4450.011765
ORF1ab/nsp31412I1412TaTaaCa11B.1.4690.00361
ORF1ab/nsp31412I1412TaTaaCa11B.1.4700.001404
ORF1ab/nsp31412I1412TaTaaCa11B.1.4730.019231
ORF1ab/nsp31412I1412VAtaGta11B.1.4970.000315
ORF1ab/nsp31412I1412TaTaaCa11B.1.5050.004386
ORF1ab/nsp31412I1412TaTaaCa11B.1.5230.002451
ORF1ab/nsp31412I1412VAtaGta11B.1.5250.000113
ORF1ab/nsp31412I1412TaTaaCa11B.1.5270.003704
ORF1ab/nsp31412I1412TaTaaCa11B.1.5400.009709
ORF1ab/nsp31412I1412TaTaaCa11B.1.5580.004566
ORF1ab/nsp31412I1412delATA---11B.1.5750.000303
ORF1ab/nsp31412I1412TaTaaCa11B.1.575.20.004808
ORF1ab/nsp31412I1412TaTaaCa11B.1.5770.000687
ORF1ab/nsp31412I1412TaTaaCa11B.1.5820.000491
ORF1ab/nsp31412I1412LAtaTta11B.1.5890.007576
ORF1ab/nsp31412I1412TaTaaCa11B.1.5900.004545
ORF1ab/nsp31412I1412KaTaaAa11B.1.5990.00365
ORF1ab/nsp31412I1412TaTaaCa11B.1.6060.006024
ORF1ab/nsp31412I1412FAtATtT11B.1.617.10.000129
ORF1ab/nsp31412I1412YATATAT11B.1.617.10.000129
ORF1ab/nsp31412I1412LAtaTta11B.1.617.10.000129
ORF1ab/nsp31412I1412IatAatT11B.1.617.10.000129
ORF1ab/nsp31412I1412del1aTaa-a11B.1.617.10.000129
ORF1ab/nsp31412I1412NaTAaAT11B.1.617.10.000129
ORF1ab/nsp31412I1412XATaTAa11B.1.617.10.000129
ORF1ab/nsp31412I1412MatAatG11B.1.617.20.000004
ORF1ab/nsp31412I1412KaTaaAa11B.1.617.20.000004
ORF1ab/nsp31412I1412IatAatC11B.1.617.20.000004
ORF1ab/nsp31412I1412TaTaaCa11B.1.619.10.000641
ORF1ab/nsp31412I1412delATA---11B.1.6210.000089
ORF1ab/nsp31412I1412delATA---11B.1.621.10.000506
ORF1ab/nsp31412I1412delATA---11B.1.6300.005236
ORF1ab/nsp31412I1412TaTaaCa11B.1.6340.003425
ORF1ab/nsp31412I1412TaTaaCa11B.1.6360.006711
ORF1ab/nsp31412I1412delATA---11B.1.6370.000073
ORF1ab/nsp31412I1412MatAatG11B.1.6370.000073
ORF1ab/nsp31412I1412TaTaaCa11B.1.9.50.005682
ORF1ab/nsp31412I1412TaTaaCa11B.1.940.027027
ORF1ab/nsp31412I1412delATA---11B.400.000364
ORF1ab/nsp31412I1412TaTaaCa11B.550.00295
ORF1ab/nsp31412I1412MatAatG11B.60.00091
ORF1ab/nsp31412I1412TaTaaCa11B.60.00091
ORF1ab/nsp31412I1412VAtaGta11C.350.000774
ORF1ab/nsp31412I1412KaTaaAa11C.350.000774
ORF1ab/nsp31412I1412IatAatC11C.350.000774
ORF1ab/nsp31412I1412TaTaaCa11C.360.000911
ORF1ab/nsp31412I1412TaTaaCa11C.36.3.10.002717
ORF1ab/nsp31412I1412TaTaaCa11C.380.008065
ORF1ab/nsp31412I1412TaTaaCa11D.20.000075
ORF1ab/nsp31412I1412LAtaTta11D.20.000075
ORF1ab/nsp31412I1412TaTaaCa11N.50.001767
ORF1ab/nsp31412I1412VAtaGta11P.10.000016
ORF1ab/nsp31412I1412MatAatG11P.10.000016
ORF1ab/nsp31412I1412TaTaaCa11P.1.10.10.00813
ORF1ab/nsp31412I1412VAtaGta11P.1.150.000232
ORF1ab/nsp31412I1412delATA---11P.1.150.000232
ORF1ab/nsp31412I1412TaTaaCa11P.30.001595
ORF1ab/nsp31412I1412LAtaTta11R.10.00009