CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1412 | I1412T | I2230T | nonsyn | aTa | aCa | 1122453 | 1122427 | 0.999977 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412T | I2230T | nonsyn | aTA | aCC | 1122453 | 16 | 0.0000142545 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412T | I2230T | nonsyn | aTA | aCG | 1122453 | 9 | 0.00000801815 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412T | I2230T | nonsyn | aTA | aCT | 1122453 | 1 | 0.000000890906 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412M | I2230M | nonsyn | atA | atG | 278 | 278 | 1 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412del | I2230del | del | ATA | --- | 232 | 232 | 1 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412V | I2230V | nonsyn | Ata | Gta | 101 | 101 | 1 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412L | I2230L | nonsyn | Ata | Tta | 23 | 21 | 0.913043 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412L | I2230L | nonsyn | Ata | Cta | 23 | 2 | 0.0869565 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412K | I2230K | nonsyn | aTa | aAa | 20 | 20 | 1 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412I | I2230I | syn | atA | atT | 10 | 7 | 0.7 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412I | I2230I | syn | atA | atC | 10 | 3 | 0.3 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412del1 | I2230del1 | del | Ata | -ta | 8 | 4 | 0.5 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412del1 | I2230del1 | del | atA | at- | 8 | 3 | 0.375 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412del1 | I2230del1 | del | aTa | a-a | 8 | 1 | 0.125 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412A | I2230A | nonsyn | ATa | GCa | 6 | 6 | 1 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412del2 | I2230del2 | del | ATa | --a | 6 | 5 | 0.833333 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412del2 | I2230del2 | del | aTA | a-- | 6 | 1 | 0.166667 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412R | I2230R | nonsyn | aTa | aGa | 3 | 3 | 1 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412X | I2230X | nonsyn | ATa | TAa | 2 | 2 | 1 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412N | I2230N | nonsyn | aTA | aAT | 2 | 1 | 0.5 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412N | I2230N | nonsyn | aTA | aAC | 2 | 1 | 0.5 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412P | I2230P | nonsyn | ATa | CCa | 1 | 1 | 1 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412Y | I2230Y | nonsyn | ATA | TAT | 1 | 1 | 1 | 6953-6955 |
ORF1ab/nsp3 | 1412 | I1412F | I2230F | nonsyn | AtA | TtT | 1 | 1 | 1 | 6953-6955 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1122427 | 1122453 | All | 0.214677 |
ORF1ab/nsp3 | 1412 | I1412T | aTA | aCC | 16 | 1122453 | All | 0.000003 |
ORF1ab/nsp3 | 1412 | I1412T | aTA | aCG | 9 | 1122453 | All | 0.000002 |
ORF1ab/nsp3 | 1412 | I1412T | aTA | aCT | 1 | 1122453 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1090831 | 1090856 | B.1.1.7 | 0.976537 |
ORF1ab/nsp3 | 1412 | I1412T | aTA | aCC | 16 | 1090856 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 1412 | I1412T | aTA | aCG | 8 | 1090856 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1412 | I1412T | aTA | aCT | 1 | 1090856 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 7746 | 7746 | Q.1 | 0.978525 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6630 | 6630 | Q.3 | 0.961566 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5927 | 5927 | Q.8 | 0.977408 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2909 | 2910 | B.1.1 | 0.052772 |
ORF1ab/nsp3 | 1412 | I1412T | aTA | aCG | 1 | 2910 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2074 | 2074 | Q.4 | 0.943156 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1479 | 1479 | Q.2 | 0.907362 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1419 | 1419 | B.1 | 0.012997 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 890 | 890 | Q.7 | 0.988889 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 278 | 278 | All | 0.000053 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 232 | 232 | All | 0.000044 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 222 | 222 | AY.102 | 0.005886 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 182 | 182 | B.1.177.73 | 0.103058 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 153 | 153 | AY.10 | 0.081081 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 148 | 148 | Q.6 | 0.980132 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 133 | 133 | B.1.375 | 0.109016 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 106 | 106 | B.1.177.21 | 0.008106 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 101 | 101 | All | 0.000019 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 98 | 98 | B.1.177 | 0.00129 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 90 | 90 | B.1.2 | 0.000792 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 76 | 76 | B.1.1.7 | 0.000068 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 75 | 75 | B.1.526 | 0.001763 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 58 | 58 | Q.5 | 0.983051 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 55 | 55 | B.1.1.205 | 0.204461 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 54 | 54 | B.1.221 | 0.003836 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 53 | 53 | B.1.576 | 0.048051 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 52 | 52 | B.1.617.2 | 0.000196 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 50 | 50 | P.1 | 0.000788 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 49 | 49 | AY.4.2 | 0.001063 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 43 | 43 | B.1.596 | 0.003747 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 41 | 41 | B.1.1.409 | 0.116147 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 39 | 39 | AY.33 | 0.002604 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 36 | 36 | B.1.177.7 | 0.005935 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 31 | 31 | AY.43 | 0.000137 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 28 | 28 | B.1.351 | 0.000832 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 26 | 26 | B | 0.003323 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 26 | 26 | B.1.1.507 | 0.226087 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 26 | 26 | P.1.1 | 0.008259 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 21 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Cta | 2 | 23 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 23 | 23 | B.1.429 | 0.000541 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 22 | 22 | B.1.258 | 0.001464 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 22 | 22 | B.1.575 | 0.006675 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 21 | 21 | B.1.1.519 | 0.000834 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 21 | 21 | B.1.623 | 0.011266 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 20 | 20 | All | 0.000004 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 18 | 18 | B.1.1.220 | 0.033457 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 18 | 18 | B.1.160 | 0.000561 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 18 | 18 | B.1.609 | 0.008629 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 17 | 17 | B.1.1.161 | 0.060071 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 17 | 17 | B.1.346 | 0.02228 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 17 | 17 | B.1.427 | 0.000858 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 16 | 16 | AY.39 | 0.000395 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 14 | 14 | B.1.595 | 0.003653 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 13 | 13 | B.1.1.528 | 0.0625 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 13 | 13 | B.1.637 | 0.00095 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 12 | 12 | B.1.1.312 | 0.022945 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 12 | 12 | P.1.16 | 0.004489 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atT | 7 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atC | 3 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 10 | 10 | B.1.580 | 0.04065 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 10 | 10 | C.36.3 | 0.005672 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 9 | 9 | AY.30 | 0.003562 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 9 | 9 | B.1.157 | 0.026866 |
ORF1ab/nsp3 | 1412 | I1412del1 | Ata | -ta | 4 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412del1 | atA | at- | 3 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412del1 | aTa | a-a | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 8 | 8 | AY.30 | 0.003166 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 8 | 8 | B.1.628 | 0.002819 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 8 | 8 | P.1.17 | 0.001294 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 7 | 7 | AY.14 | 0.000616 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 7 | 7 | B.1.177.4 | 0.001477 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 7 | 7 | B.1.206 | 0.00571 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 7 | 7 | C.1 | 0.016746 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp3 | 1412 | I1412A | ATa | GCa | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412del2 | ATa | --a | 5 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412del2 | aTA | a-- | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 1412 | I1412A | ATa | GCa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | B.1.139 | 0.004399 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | B.1.311 | 0.001647 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | B.1.411 | 0.022222 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5 | 5 | B.1.389 | 0.00501 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5 | 5 | B.1.409 | 0.003906 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | A | 0.001548 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1412 | I1412del2 | ATa | --a | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | AZ.2 | 0.003284 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atT | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | B.1.533 | 0.038462 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 4 | 4 | B.1.599 | 0.014599 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 1412 | I1412R | aTa | aGa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.1.389 | 0.018182 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.170 | 0.012931 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.524 | 0.004219 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Cta | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.625 | 0.007059 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.1.633 | 0.125 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | B.3.1 | 0.004975 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 3 | 3 | P.1.13 | 0.002695 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp3 | 1412 | I1412X | ATa | TAa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412N | aTA | aAC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412N | aTA | aAT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.1.148 | 0.017544 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.1.304 | 0.005618 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.1.417 | 0.005405 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.1.525 | 0.010929 |
ORF1ab/nsp3 | 1412 | I1412del2 | ATa | --a | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412del2 | aTA | a-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 1412 | I1412del1 | atA | at- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 2 | 2 | U.3 | 0.007722 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 1412 | I1412Y | ATA | TAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412F | AtA | TtT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412P | ATa | CCa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Cta | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1412 | I1412del1 | Ata | -ta | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atT | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1412 | I1412del1 | Ata | -ta | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1412 | I1412X | ATa | TAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.162 | 0.029412 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.187 | 0.00885 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 1412 | I1412R | aTa | aGa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 1412 | I1412R | aTa | aGa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | B.1.1.423 | 0.0625 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.424 | 0.045455 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412N | aTA | aAC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412P | ATa | CCa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1412 | I1412R | aTa | aGa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1412 | I1412del1 | Ata | -ta | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.67 | 0.007634 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 1412 | I1412del1 | Ata | -ta | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.205 | 0.02381 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1412 | I1412del1 | atA | at- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.445 | 0.011765 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.575.2 | 0.004808 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 1412 | I1412F | AtA | TtT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1412 | I1412Y | ATA | TAT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1412 | I1412del1 | aTa | a-a | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1412 | I1412N | aTA | aAT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1412 | I1412X | ATa | TAa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1412 | I1412K | aTa | aAa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1412 | I1412I | atA | atC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | C.38 | 0.008065 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1412 | I1412M | atA | atG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp3 | 1412 | I1412V | Ata | Gta | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1412 | I1412del | ATA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1412 | I1412T | aTa | aCa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1412 | I1412L | Ata | Tta | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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