CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1408

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31408L1408LL2226LsynCtgTtg18727166620.8897316941-6943
ORF1ab/nsp31408L1408LL2226LsynctGctT1872719600.1046626941-6943
ORF1ab/nsp31408L1408LL2226LsynctGctA18727560.002990336941-6943
ORF1ab/nsp31408L1408LL2226LsynctGctC18727490.002616546941-6943
ORF1ab/nsp31408L1408delL2226deldelCTG---25825816941-6943
ORF1ab/nsp31408L1408ML2226MnonsynCtgAtg25125116941-6943
ORF1ab/nsp31408L1408FL2226FnonsynCtGTtT282816941-6943
ORF1ab/nsp31408L1408PL2226PnonsyncTgcCg25220.886941-6943
ORF1ab/nsp31408L1408PL2226PnonsyncTGcCT2520.086941-6943
ORF1ab/nsp31408L1408PL2226PnonsyncTGcCC2510.046941-6943
ORF1ab/nsp31408L1408TL2226TnonsynCTgACg1380.6153856941-6943
ORF1ab/nsp31408L1408TL2226TnonsynCTGACT1340.3076926941-6943
ORF1ab/nsp31408L1408TL2226TnonsynCTGACA1310.07692316941-6943
ORF1ab/nsp31408L1408QL2226QnonsyncTgcAg1190.8181826941-6943
ORF1ab/nsp31408L1408QL2226QnonsyncTGcAA1120.1818186941-6943
ORF1ab/nsp31408L1408VL2226VnonsynCtgGtg650.8333336941-6943
ORF1ab/nsp31408L1408VL2226VnonsynCtGGtA610.1666676941-6943
ORF1ab/nsp31408L1408del1L2226del1delctGct-530.66941-6943
ORF1ab/nsp31408L1408del1L2226del1delcTgc-g510.26941-6943
ORF1ab/nsp31408L1408del1L2226del1delCtg-tg510.26941-6943
ORF1ab/nsp31408L1408IL2226InonsynCtGAtT3316941-6943
ORF1ab/nsp31408L1408SL2226SnonsynCTgTCg320.6666676941-6943
ORF1ab/nsp31408L1408SL2226SnonsynCTGTCT310.3333336941-6943
ORF1ab/nsp31408L1408HL2226HnonsyncTGcAT2216941-6943
ORF1ab/nsp31408L1408NL2226NnonsynCTGAAT1116941-6943
ORF1ab/nsp31408L1408KL2226KnonsynCTgAAg1116941-6943
ORF1ab/nsp31408L1408XL2226XnonsynCTgTAg1116941-6943
ORF1ab/nsp31408L1408del2L2226del2delCTg--g1116941-6943
ORF1ab/nsp31408L1408RL2226RnonsyncTgcGg1116941-6943

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31408L1408LCtgTtg1666218727All0.003187
ORF1ab/nsp31408L1408LctGctT196018727All0.000375
ORF1ab/nsp31408L1408LctGctA5618727All0.000011
ORF1ab/nsp31408L1408LctGctC4918727All0.000009
ORF1ab/nsp31408L1408LCtgTtg1266012660B.1.2210.899275
ORF1ab/nsp31408L1408LCtgTtg11901190B.1.221.30.991667
ORF1ab/nsp31408L1408LctGctT577579AY.9.20.021193
ORF1ab/nsp31408L1408LCtgTtg2579AY.9.20.000073
ORF1ab/nsp31408L1408LCtgTtg292441B.1.1.70.000261
ORF1ab/nsp31408L1408LctGctT140441B.1.1.70.000125
ORF1ab/nsp31408L1408LctGctA6441B.1.1.70.000005
ORF1ab/nsp31408L1408LctGctC3441B.1.1.70.000003
ORF1ab/nsp31408L1408LCtgTtg334334B.1.221.10.97093
ORF1ab/nsp31408L1408LctGctT315315B.1.1.2630.490654
ORF1ab/nsp31408L1408LCtgTtg191296AY.40.000297
ORF1ab/nsp31408L1408LctGctT88296AY.40.000137
ORF1ab/nsp31408L1408LctGctA14296AY.40.000022
ORF1ab/nsp31408L1408LctGctC3296AY.40.000005
ORF1ab/nsp31408L1408delCTG---258258All0.000049
ORF1ab/nsp31408L1408LctGctT252253AY.460.026228
ORF1ab/nsp31408L1408LCtgTtg1253AY.460.000104
ORF1ab/nsp31408L1408MCtgAtg251251All0.000048
ORF1ab/nsp31408L1408LCtgTtg233233B.1.221.40.970833
ORF1ab/nsp31408L1408LCtgTtg221221B.1.221.20.88755
ORF1ab/nsp31408L1408MCtgAtg200200AY.30.001989
ORF1ab/nsp31408L1408LCtgTtg167168P.1.120.080833
ORF1ab/nsp31408L1408LctGctT1168P.1.120.000484
ORF1ab/nsp31408L1408LCtgTtg162163B.1.177.70.026706
ORF1ab/nsp31408L1408LctGctT1163B.1.177.70.000165
ORF1ab/nsp31408L1408LctGctT152153AD.20.033282
ORF1ab/nsp31408L1408LCtgTtg1153AD.20.000219
ORF1ab/nsp31408L1408LCtgTtg90127B.1.617.20.000339
ORF1ab/nsp31408L1408LctGctT34127B.1.617.20.000128
ORF1ab/nsp31408L1408LctGctA3127B.1.617.20.000011
ORF1ab/nsp31408L1408LCtgTtg78113B.10.000714
ORF1ab/nsp31408L1408LctGctT31113B.10.000284
ORF1ab/nsp31408L1408LctGctA4113B.10.000037
ORF1ab/nsp31408L1408LCtgTtg111111C.360.101093
ORF1ab/nsp31408L1408LCtgTtg3679B.1.10.000653
ORF1ab/nsp31408L1408LctGctC3379B.1.10.000599
ORF1ab/nsp31408L1408LctGctT1079B.1.10.000181
ORF1ab/nsp31408L1408delCTG---7272B.1.1.70.000064
ORF1ab/nsp31408L1408LctGctT5668AY.4.20.001215
ORF1ab/nsp31408L1408LCtgTtg1268AY.4.20.00026
ORF1ab/nsp31408L1408LCtgTtg6166AY.250.000367
ORF1ab/nsp31408L1408LctGctT566AY.250.00003
ORF1ab/nsp31408L1408LCtgTtg5664B.1.20.000493
ORF1ab/nsp31408L1408LctGctT864B.1.20.00007
ORF1ab/nsp31408L1408LCtgTtg4657AY.440.00028
ORF1ab/nsp31408L1408LctGctT1157AY.440.000067
ORF1ab/nsp31408L1408LCtgTtg3255AY.1030.000199
ORF1ab/nsp31408L1408LctGctT2155AY.1030.00013
ORF1ab/nsp31408L1408LctGctA255AY.1030.000012
ORF1ab/nsp31408L1408LCtgTtg4452B.1.1770.000579
ORF1ab/nsp31408L1408LctGctT852B.1.1770.000105
ORF1ab/nsp31408L1408LctGctT2946B.1.1600.000904
ORF1ab/nsp31408L1408LCtgTtg1746B.1.1600.00053
ORF1ab/nsp31408L1408LCtgTtg2431AY.430.000106
ORF1ab/nsp31408L1408LctGctT431AY.430.000018
ORF1ab/nsp31408L1408LctGctA231AY.430.000009
ORF1ab/nsp31408L1408LctGctC131AY.430.000004
ORF1ab/nsp31408L1408LCtgTtg2530AY.30.000249
ORF1ab/nsp31408L1408LctGctT530AY.30.00005
ORF1ab/nsp31408L1408FCtGTtT2828All0.000005
ORF1ab/nsp31408L1408LctGctT2028AY.1190.000706
ORF1ab/nsp31408L1408LCtgTtg628AY.1190.000212
ORF1ab/nsp31408L1408LctGctA228AY.1190.000071
ORF1ab/nsp31408L1408LCtgTtg2828AY.260.000793
ORF1ab/nsp31408L1408LCtgTtg2427B.1.4290.000565
ORF1ab/nsp31408L1408LctGctT327B.1.4290.000071
ORF1ab/nsp31408L1408PcTgcCg2225All0.000004
ORF1ab/nsp31408L1408PcTGcCT225All0
ORF1ab/nsp31408L1408PcTGcCC125All0
ORF1ab/nsp31408L1408FCtGTtT2424AY.40.000037
ORF1ab/nsp31408L1408LCtgTtg1424P.10.000221
ORF1ab/nsp31408L1408LctGctT1024P.10.000158
ORF1ab/nsp31408L1408LCtgTtg2323AY.3.10.001961
ORF1ab/nsp31408L1408LCtgTtg2323B.1.6270.046465
ORF1ab/nsp31408L1408delCTG---2222AY.40.000034
ORF1ab/nsp31408L1408LCtgTtg1420AY.390.000346
ORF1ab/nsp31408L1408LctGctT620AY.390.000148
ORF1ab/nsp31408L1408LctGctT1717B.1.177.540.010309
ORF1ab/nsp31408L1408LCtgTtg1316B.1.1.5190.000516
ORF1ab/nsp31408L1408LctGctT316B.1.1.5190.000119
ORF1ab/nsp31408L1408LCtgTtg1516B.1.2430.001044
ORF1ab/nsp31408L1408LctGctT116B.1.2430.00007
ORF1ab/nsp31408L1408LCtgTtg1515B.1.1.1890.022693
ORF1ab/nsp31408L1408delCTG---1515B.1.1770.000198
ORF1ab/nsp31408L1408LCtgTtg1515B.1.177.620.017878
ORF1ab/nsp31408L1408TCTgACg813All0.000002
ORF1ab/nsp31408L1408TCTGACT413All0.000001
ORF1ab/nsp31408L1408TCTGACA113All0
ORF1ab/nsp31408L1408LctGctT713AY.1020.000186
ORF1ab/nsp31408L1408LCtgTtg613AY.1020.000159
ORF1ab/nsp31408L1408LCtgTtg1013AY.1200.000372
ORF1ab/nsp31408L1408LctGctT213AY.1200.000074
ORF1ab/nsp31408L1408LctGctA113AY.1200.000037
ORF1ab/nsp31408L1408LctGctT1313AY.4.50.001397
ORF1ab/nsp31408L1408delCTG---1313B.10.000119
ORF1ab/nsp31408L1408LCtgTtg1313B.1.2100.027719
ORF1ab/nsp31408L1408LCtgTtg1113B.1.5260.000259
ORF1ab/nsp31408L1408LctGctT213B.1.5260.000047
ORF1ab/nsp31408L1408LCtgTtg913B.1.6210.000797
ORF1ab/nsp31408L1408LctGctT413B.1.6210.000354
ORF1ab/nsp31408L1408MCtgAtg1212AY.1050.007717
ORF1ab/nsp31408L1408LCtgTtg1112AY.290.000174
ORF1ab/nsp31408L1408LctGctT112AY.290.000016
ORF1ab/nsp31408L1408QcTgcAg911All0.000002
ORF1ab/nsp31408L1408QcTGcAA211All0
ORF1ab/nsp31408L1408LCtgTtg1111AY.46.50.002183
ORF1ab/nsp31408L1408delCTG---1010B.1.20.000088
ORF1ab/nsp31408L1408LCtgTtg99AY.1100.001014
ORF1ab/nsp31408L1408LCtgTtg99AY.1170.000761
ORF1ab/nsp31408L1408LCtgTtg99AY.200.00035
ORF1ab/nsp31408L1408LCtgTtg99AY.50.000186
ORF1ab/nsp31408L1408LCtgTtg89B0.001022
ORF1ab/nsp31408L1408LctGctT19B0.000128
ORF1ab/nsp31408L1408LctGctT99B.1.1.2650.028391
ORF1ab/nsp31408L1408LCtgTtg99B.1.258.220.024
ORF1ab/nsp31408L1408LctGctA59B.1.617.10.000645
ORF1ab/nsp31408L1408LctGctT29B.1.617.10.000258
ORF1ab/nsp31408L1408LCtgTtg19B.1.617.10.000129
ORF1ab/nsp31408L1408LctGctC19B.1.617.10.000129
ORF1ab/nsp31408L1408delCTG---99B.1.621.10.004552
ORF1ab/nsp31408L1408delCTG---88AY.1030.00005
ORF1ab/nsp31408L1408delCTG---88B.1.10.000145
ORF1ab/nsp31408L1408LctGctT88B.1.177.210.000612
ORF1ab/nsp31408L1408LCtgTtg67A0.002322
ORF1ab/nsp31408L1408LctGctT17A0.000387
ORF1ab/nsp31408L1408LCtgTtg67AY.99.20.000553
ORF1ab/nsp31408L1408LctGctA17AY.99.20.000092
ORF1ab/nsp31408L1408LctGctT77B.1.1.3060.003069
ORF1ab/nsp31408L1408MCtgAtg77B.1.1.70.000006
ORF1ab/nsp31408L1408LCtgTtg77B.1.1260.008929
ORF1ab/nsp31408L1408LCtgTtg77B.1.160.320.030043
ORF1ab/nsp31408L1408LCtgTtg77B.1.177.430.01034
ORF1ab/nsp31408L1408delCTG---660.333333
ORF1ab/nsp31408L1408VCtgGtg56All0.000001
ORF1ab/nsp31408L1408VCtGGtA16All0
ORF1ab/nsp31408L1408delCTG---66AY.430.000027
ORF1ab/nsp31408L1408LCtgTtg46AY.610.000419
ORF1ab/nsp31408L1408LctGctC16AY.610.000105
ORF1ab/nsp31408L1408LctGctT16AY.610.000105
ORF1ab/nsp31408L1408LCtgTtg36B.1.2340.000396
ORF1ab/nsp31408L1408LctGctT36B.1.2340.000396
ORF1ab/nsp31408L1408LCtgTtg66B.1.36.10.006842
ORF1ab/nsp31408L1408del1ctGct-35All0.000001
ORF1ab/nsp31408L1408del1cTgc-g15All0
ORF1ab/nsp31408L1408del1Ctg-tg15All0
ORF1ab/nsp31408L1408LCtgTtg25AY.1000.000092
ORF1ab/nsp31408L1408LctGctT25AY.1000.000092
ORF1ab/nsp31408L1408LctGctA15AY.1000.000046
ORF1ab/nsp31408L1408LCtgTtg55AY.1140.001156
ORF1ab/nsp31408L1408delCTG---55B.1.2210.000355
ORF1ab/nsp31408L1408LCtgTtg55B.1.2580.000333
ORF1ab/nsp31408L1408LCtgTtg55B.1.3240.008026
ORF1ab/nsp31408L1408LctGctT55B.1.36.170.00247
ORF1ab/nsp31408L1408LctGctC55B.1.3750.004098
ORF1ab/nsp31408L1408LCtgTtg45B.1.6230.002146
ORF1ab/nsp31408L1408LctGctT15B.1.6230.000536
ORF1ab/nsp31408L1408LCtgTtg45B.1.6370.000292
ORF1ab/nsp31408L1408LctGctT15B.1.6370.000073
ORF1ab/nsp31408L1408LCtgTtg55Y.10.064103
ORF1ab/nsp31408L1408LctGctT34A.2.50.001497
ORF1ab/nsp31408L1408LCtgTtg14A.2.50.000499
ORF1ab/nsp31408L1408MCtgAtg44AY.1180.000251
ORF1ab/nsp31408L1408LCtgTtg24AY.1210.000271
ORF1ab/nsp31408L1408LctGctT24AY.1210.000271
ORF1ab/nsp31408L1408delCTG---44AY.200.000155
ORF1ab/nsp31408L1408delCTG---44AY.30.00004
ORF1ab/nsp31408L1408MCtgAtg44AY.440.000024
ORF1ab/nsp31408L1408LctGctT44AY.46.40.000658
ORF1ab/nsp31408L1408LCtgTtg44AY.470.000124
ORF1ab/nsp31408L1408LCtgTtg34AY.60.000123
ORF1ab/nsp31408L1408LctGctA14AY.60.000041
ORF1ab/nsp31408L1408LCtgTtg34AY.9.10.000251
ORF1ab/nsp31408L1408LctGctT14AY.9.10.000084
ORF1ab/nsp31408L1408LCtgTtg44B.1.1.2840.00043
ORF1ab/nsp31408L1408LCtgTtg44B.1.1.3480.003185
ORF1ab/nsp31408L1408LCtgTtg44B.1.1.390.002039
ORF1ab/nsp31408L1408PcTgcCg34B.1.1.70.000003
ORF1ab/nsp31408L1408PcTGcCC14B.1.1.70.000001
ORF1ab/nsp31408L1408LctGctT44B.1.1040.01476
ORF1ab/nsp31408L1408LctGctT44B.1.177.750.004162
ORF1ab/nsp31408L1408LCtgTtg34B.1.4270.000151
ORF1ab/nsp31408L1408LctGctT14B.1.4270.00005
ORF1ab/nsp31408L1408LCtgTtg34B.1.5880.00273
ORF1ab/nsp31408L1408LctGctT14B.1.5880.00091
ORF1ab/nsp31408L1408LCtgTtg34B.1.5960.000261
ORF1ab/nsp31408L1408LctGctC14B.1.5960.000087
ORF1ab/nsp31408L1408delCTG---44B.1.617.20.000015
ORF1ab/nsp31408L1408LCtgTtg44C.1.20.017021
ORF1ab/nsp31408L1408LctGctT44C.350.003096
ORF1ab/nsp31408L1408ICtGAtT33All0.000001
ORF1ab/nsp31408L1408SCTgTCg23All0
ORF1ab/nsp31408L1408SCTGTCT13All0
ORF1ab/nsp31408L1408LCtgTtg33AY.330.0002
ORF1ab/nsp31408L1408LCtgTtg23AY.39.10.000079
ORF1ab/nsp31408L1408LctGctC13AY.39.10.00004
ORF1ab/nsp31408L1408LCtgTtg33AY.39.1.10.002174
ORF1ab/nsp31408L1408TCTgACg33AY.430.000013
ORF1ab/nsp31408L1408LCtgTtg33AY.710.001425
ORF1ab/nsp31408L1408LctGctT23AY.880.001768
ORF1ab/nsp31408L1408LCtgTtg13AY.880.000884
ORF1ab/nsp31408L1408LctGctT33AY.90.000203
ORF1ab/nsp31408L1408LCtgTtg23AY.980.000158
ORF1ab/nsp31408L1408LctGctT13AY.980.000079
ORF1ab/nsp31408L1408LCtgTtg33B.1.1.2510.02381
ORF1ab/nsp31408L1408LctGctT23B.1.1.280.000622
ORF1ab/nsp31408L1408LctGctA13B.1.1.280.000311
ORF1ab/nsp31408L1408LctGctT33B.1.1.4560.166667
ORF1ab/nsp31408L1408LctGctA23B.1.1.700.000682
ORF1ab/nsp31408L1408LCtgTtg13B.1.1.700.000341
ORF1ab/nsp31408L1408LCtgTtg23B.1.177.440.001038
ORF1ab/nsp31408L1408LctGctT13B.1.177.440.000519
ORF1ab/nsp31408L1408LCtgTtg33B.1.3510.000089
ORF1ab/nsp31408L1408delCTG---33B.1.5960.000261
ORF1ab/nsp31408L1408LctGctT23B.1.6090.000959
ORF1ab/nsp31408L1408LCtgTtg13B.1.6090.000479
ORF1ab/nsp31408L1408LctGctA33B.60.00273
ORF1ab/nsp31408L1408LctGctT23C.370.000232
ORF1ab/nsp31408L1408LCtgTtg13C.370.000116
ORF1ab/nsp31408L1408LctGctT23P.1.140.000096
ORF1ab/nsp31408L1408LCtgTtg13P.1.140.000048
ORF1ab/nsp31408L1408LCtgTtg33P.1.150.000697
ORF1ab/nsp31408L1408LctGctT23P.1.70.000639
ORF1ab/nsp31408L1408LCtgTtg13P.1.70.000319
ORF1ab/nsp31408L1408VCtgGtg12A.2.40.003367
ORF1ab/nsp31408L1408VCtGGtA12A.2.40.003367
ORF1ab/nsp31408L1408PcTGcCT12A.210.00277
ORF1ab/nsp31408L1408TCTgACg12A.210.00277
ORF1ab/nsp31408L1408TCTGACT12A.210.00277
ORF1ab/nsp31408L1408PcTgcCg12A.210.00277
ORF1ab/nsp31408L1408MCtgAtg22AJ.10.090909
ORF1ab/nsp31408L1408HcTGcAT22All0
ORF1ab/nsp31408L1408LctGctT22AY.1130.000285
ORF1ab/nsp31408L1408delCTG---22AY.1190.000071
ORF1ab/nsp31408L1408LCtgTtg22AY.120.2.10.000997
ORF1ab/nsp31408L1408LCtgTtg12AY.130.000161
ORF1ab/nsp31408L1408LctGctT12AY.130.000161
ORF1ab/nsp31408L1408delCTG---22AY.250.000012
ORF1ab/nsp31408L1408LCtgTtg22AY.270.000129
ORF1ab/nsp31408L1408LCtgTtg12AY.360.000148
ORF1ab/nsp31408L1408LctGctA12AY.360.000148
ORF1ab/nsp31408L1408MCtgAtg22AY.40.000003
ORF1ab/nsp31408L1408MCtgAtg22AY.4.50.000215
ORF1ab/nsp31408L1408delCTG---22AY.4.50.000215
ORF1ab/nsp31408L1408TCTgACg22AY.420.00008
ORF1ab/nsp31408L1408LCtgTtg22AY.450.000243
ORF1ab/nsp31408L1408LCtgTtg12AY.46.60.000072
ORF1ab/nsp31408L1408LctGctT12AY.46.60.000072
ORF1ab/nsp31408L1408LctGctT12AY.550.000917
ORF1ab/nsp31408L1408LCtgTtg12AY.550.000917
ORF1ab/nsp31408L1408LCtgTtg22AY.590.001059
ORF1ab/nsp31408L1408LctGctT12AY.700.000209
ORF1ab/nsp31408L1408LctGctA12AY.700.000209
ORF1ab/nsp31408L1408LCtgTtg22AY.750.000112
ORF1ab/nsp31408L1408LCtgTtg22AY.840.000875
ORF1ab/nsp31408L1408LCtgTtg22AZ.20.001642
ORF1ab/nsp31408L1408SCTGTCT12B.1.10.000018
ORF1ab/nsp31408L1408SCTgTCg12B.1.10.000018
ORF1ab/nsp31408L1408TCTGACT12B.1.10.000018
ORF1ab/nsp31408L1408TCTgACg12B.1.10.000018
ORF1ab/nsp31408L1408LCtgTtg22B.1.1.10.000653
ORF1ab/nsp31408L1408LctGctT22B.1.1.1360.042553
ORF1ab/nsp31408L1408LCtgTtg22B.1.1.1410.004024
ORF1ab/nsp31408L1408LctGctT12B.1.1.2200.001859
ORF1ab/nsp31408L1408LctGctA12B.1.1.2200.001859
ORF1ab/nsp31408L1408LCtgTtg22B.1.1.3180.000604
ORF1ab/nsp31408L1408LCtgTtg22B.1.1.330.000842
ORF1ab/nsp31408L1408LCtgTtg22B.1.1.4200.002012
ORF1ab/nsp31408L1408LctGctT22B.1.177.180.00232
ORF1ab/nsp31408L1408LCtgTtg22B.1.177.350.001382
ORF1ab/nsp31408L1408delCTG---22B.1.177.40.000422
ORF1ab/nsp31408L1408LCtgTtg22B.1.177.60.001953
ORF1ab/nsp31408L1408LCtgTtg22B.1.177.730.001133
ORF1ab/nsp31408L1408LCtgTtg22B.1.177.860.000367
ORF1ab/nsp31408L1408LCtgTtg22B.1.2060.001631
ORF1ab/nsp31408L1408LCtgTtg22B.1.2320.001075
ORF1ab/nsp31408L1408delCTG---22B.1.2580.000133
ORF1ab/nsp31408L1408LCtgTtg22B.1.258.140.001961
ORF1ab/nsp31408L1408LCtgTtg22B.1.2650.002541
ORF1ab/nsp31408L1408delCTG---22B.1.3110.000549
ORF1ab/nsp31408L1408LCtgTtg22B.1.3320.006993
ORF1ab/nsp31408L1408LCtgTtg22B.1.3360.004878
ORF1ab/nsp31408L1408LctGctT22B.1.351.30.001753
ORF1ab/nsp31408L1408LCtgTtg22B.1.360.000292
ORF1ab/nsp31408L1408LCtgTtg22B.1.3970.009709
ORF1ab/nsp31408L1408LctGctA22B.1.4970.00063
ORF1ab/nsp31408L1408delCTG---22B.1.5170.000854
ORF1ab/nsp31408L1408delCTG---22B.1.5250.000226
ORF1ab/nsp31408L1408LCtgTtg12B.1.5250.000113
ORF1ab/nsp31408L1408LctGctT12B.1.5250.000113
ORF1ab/nsp31408L1408TCTgACg12B.1.617.10.000129
ORF1ab/nsp31408L1408PcTGcCT12B.1.617.10.000129
ORF1ab/nsp31408L1408PcTgcCg12B.1.617.10.000129
ORF1ab/nsp31408L1408TCTGACT12B.1.617.10.000129
ORF1ab/nsp31408L1408MCtgAtg22B.1.617.20.000008
ORF1ab/nsp31408L1408LCtgTtg12D.20.000075
ORF1ab/nsp31408L1408LctGctA12D.20.000075
ORF1ab/nsp31408L1408delCTG---22P.10.000032
ORF1ab/nsp31408L1408LctGctT22P.1.130.001797
ORF1ab/nsp31408L1408LctGctT22Q.80.00033
ORF1ab/nsp31408L1408delCTG---22U.30.007722
ORF1ab/nsp31408L1408VCtgGtg110.055556
ORF1ab/nsp31408L1408LCtgTtg110.055556
ORF1ab/nsp31408L1408delCTG---11A.2.40.003367
ORF1ab/nsp31408L1408LctGctA11A.2.40.003367
ORF1ab/nsp31408L1408LctGctT11A.210.00277
ORF1ab/nsp31408L1408MCtgAtg11A.210.00277
ORF1ab/nsp31408L1408ICtGAtT11A.210.00277
ORF1ab/nsp31408L1408delCTG---11A.280.002646
ORF1ab/nsp31408L1408del2CTg--g11All0
ORF1ab/nsp31408L1408XCTgTAg11All0
ORF1ab/nsp31408L1408RcTgcGg11All0
ORF1ab/nsp31408L1408KCTgAAg11All0
ORF1ab/nsp31408L1408NCTGAAT11All0
ORF1ab/nsp31408L1408PcTgcCg11AY.1030.000006
ORF1ab/nsp31408L1408VCtgGtg11AY.1030.000006
ORF1ab/nsp31408L1408LCtgTtg11AY.1060.000335
ORF1ab/nsp31408L1408LctGctT11AY.1090.00074
ORF1ab/nsp31408L1408delCTG---11AY.1100.000113
ORF1ab/nsp31408L1408LCtgTtg11AY.1110.000183
ORF1ab/nsp31408L1408MCtgAtg11AY.1190.000035
ORF1ab/nsp31408L1408delCTG---11AY.1200.000037
ORF1ab/nsp31408L1408LCtgTtg11AY.140.000088
ORF1ab/nsp31408L1408LctGctT11AY.160.00038
ORF1ab/nsp31408L1408LCtgTtg11AY.23.10.000417
ORF1ab/nsp31408L1408delCTG---11AY.240.000431
ORF1ab/nsp31408L1408LCtgTtg11AY.240.000431
ORF1ab/nsp31408L1408MCtgAtg11AY.250.000006
ORF1ab/nsp31408L1408QcTGcAA11AY.250.000006
ORF1ab/nsp31408L1408delCTG---11AY.260.000028
ORF1ab/nsp31408L1408PcTgcCg11AY.270.000065
ORF1ab/nsp31408L1408PcTgcCg11AY.30.00001
ORF1ab/nsp31408L1408MCtgAtg11AY.300.000396
ORF1ab/nsp31408L1408PcTgcCg11AY.330.000067
ORF1ab/nsp31408L1408LctGctT11AY.34.10.00051
ORF1ab/nsp31408L1408LCtgTtg11AY.350.000233
ORF1ab/nsp31408L1408VCtgGtg11AY.360.000148
ORF1ab/nsp31408L1408delCTG---11AY.360.000148
ORF1ab/nsp31408L1408LctGctT11AY.380.000499
ORF1ab/nsp31408L1408QcTgcAg11AY.40.000002
ORF1ab/nsp31408L1408LctGctT11AY.420.00004
ORF1ab/nsp31408L1408QcTgcAg11AY.430.000004
ORF1ab/nsp31408L1408MCtgAtg11AY.430.000004
ORF1ab/nsp31408L1408del1cTgc-g11AY.440.000006
ORF1ab/nsp31408L1408QcTGcAA11AY.440.000006
ORF1ab/nsp31408L1408PcTgcCg11AY.440.000006
ORF1ab/nsp31408L1408MCtgAtg11AY.46.60.000072
ORF1ab/nsp31408L1408delCTG---11AY.470.000031
ORF1ab/nsp31408L1408delCTG---11AY.50.000021
ORF1ab/nsp31408L1408FCtGTtT11AY.5.30.000337
ORF1ab/nsp31408L1408LCtgTtg11AY.5.40.000277
ORF1ab/nsp31408L1408MCtgAtg11AY.5.40.000277
ORF1ab/nsp31408L1408LCtgTtg11AY.540.000095
ORF1ab/nsp31408L1408delCTG---11AY.610.000105
ORF1ab/nsp31408L1408LctGctT11AY.70.000196
ORF1ab/nsp31408L1408delCTG---11AY.730.000665
ORF1ab/nsp31408L1408LCtgTtg11AY.730.000665
ORF1ab/nsp31408L1408LCtgTtg11AY.740.000116
ORF1ab/nsp31408L1408SCTgTCg11AY.790.001211
ORF1ab/nsp31408L1408delCTG---11AY.840.000437
ORF1ab/nsp31408L1408MCtgAtg11AY.9.20.000037
ORF1ab/nsp31408L1408delCTG---11AY.9.20.000037
ORF1ab/nsp31408L1408LCtgTtg11AY.900.000684
ORF1ab/nsp31408L1408MCtgAtg11B.10.000009
ORF1ab/nsp31408L1408VCtgGtg11B.10.000009
ORF1ab/nsp31408L1408PcTgcCg11B.10.000009
ORF1ab/nsp31408L1408del1ctGct-11B.1.10.000018
ORF1ab/nsp31408L1408ICtGAtT11B.1.10.000018
ORF1ab/nsp31408L1408MCtgAtg11B.1.10.000018
ORF1ab/nsp31408L1408FCtGTtT11B.1.10.000018
ORF1ab/nsp31408L1408LctGctT11B.1.1.100.001115
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.1620.029412
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.1760.000439
ORF1ab/nsp31408L1408delCTG---11B.1.1.1920.002309
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.1920.002309
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.2070.001182
ORF1ab/nsp31408L1408delCTG---11B.1.1.2180.007692
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.2220.000204
ORF1ab/nsp31408L1408LctGctT11B.1.1.2310.003096
ORF1ab/nsp31408L1408delCTG---11B.1.1.2360.006897
ORF1ab/nsp31408L1408LctGctT11B.1.1.2770.000759
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.2800.003086
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.2910.000742
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.2940.001266
ORF1ab/nsp31408L1408LctGctT11B.1.1.3020.002075
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.3050.003861
ORF1ab/nsp31408L1408delCTG---11B.1.1.3110.000358
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.3110.000358
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.3120.001912
ORF1ab/nsp31408L1408delCTG---11B.1.1.3120.001912
ORF1ab/nsp31408L1408delCTG---11B.1.1.3150.008475
ORF1ab/nsp31408L1408PcTgcCg11B.1.1.3720.000689
ORF1ab/nsp31408L1408LctGctT11B.1.1.3850.004464
ORF1ab/nsp31408L1408MCtgAtg11B.1.1.390.00051
ORF1ab/nsp31408L1408delCTG---11B.1.1.4090.002833
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.4450.037037
ORF1ab/nsp31408L1408LctGctT11B.1.1.4480.002033
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.4620.008621
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.500.000679
ORF1ab/nsp31408L1408PcTgcCg11B.1.1.5190.00004
ORF1ab/nsp31408L1408LctGctT11B.1.1.520.012195
ORF1ab/nsp31408L1408LctGctT11B.1.1.630.000386
ORF1ab/nsp31408L1408del2CTg--g11B.1.1.70.000001
ORF1ab/nsp31408L1408FCtGTtT11B.1.1.70.000001
ORF1ab/nsp31408L1408delCTG---11B.1.1.700.000341
ORF1ab/nsp31408L1408PcTgcCg11B.1.1.700.000341
ORF1ab/nsp31408L1408LCtgTtg11B.1.1.830.00271
ORF1ab/nsp31408L1408LctGctA11B.1.110.30.000718
ORF1ab/nsp31408L1408MCtgAtg11B.1.1600.000031
ORF1ab/nsp31408L1408QcTgcAg11B.1.1600.000031
ORF1ab/nsp31408L1408delCTG---11B.1.160.230.004831
ORF1ab/nsp31408L1408delCTG---11B.1.160.70.002079
ORF1ab/nsp31408L1408LCtgTtg11B.1.1700.00431
ORF1ab/nsp31408L1408QcTgcAg11B.1.1770.000013
ORF1ab/nsp31408L1408LCtgTtg11B.1.177.100.000878
ORF1ab/nsp31408L1408LctGctT11B.1.177.110.001698
ORF1ab/nsp31408L1408LCtgTtg11B.1.177.120.000152
ORF1ab/nsp31408L1408delCTG---11B.1.177.150.000631
ORF1ab/nsp31408L1408del1Ctg-tg11B.1.177.160.000664
ORF1ab/nsp31408L1408delCTG---11B.1.177.180.00116
ORF1ab/nsp31408L1408delCTG---11B.1.177.190.001431
ORF1ab/nsp31408L1408delCTG---11B.1.177.210.000076
ORF1ab/nsp31408L1408LCtgTtg11B.1.177.310.011494
ORF1ab/nsp31408L1408delCTG---11B.1.177.540.000606
ORF1ab/nsp31408L1408delCTG---11B.1.177.560.000668
ORF1ab/nsp31408L1408delCTG---11B.1.177.570.000281
ORF1ab/nsp31408L1408delCTG---11B.1.177.60.000977
ORF1ab/nsp31408L1408delCTG---11B.1.177.620.001192
ORF1ab/nsp31408L1408delCTG---11B.1.177.680.015152
ORF1ab/nsp31408L1408LCtgTtg11B.1.177.810.000189
ORF1ab/nsp31408L1408delCTG---11B.1.177.810.000189
ORF1ab/nsp31408L1408LCtgTtg11B.1.177.840.006667
ORF1ab/nsp31408L1408delCTG---11B.1.177.870.000728
ORF1ab/nsp31408L1408delCTG---11B.1.177.90.001332
ORF1ab/nsp31408L1408PcTgcCg11B.1.1890.004292
ORF1ab/nsp31408L1408HcTGcAT11B.1.20.000009
ORF1ab/nsp31408L1408del1ctGct-11B.1.2060.000816
ORF1ab/nsp31408L1408LCtgTtg11B.1.2180.005155
ORF1ab/nsp31408L1408LctGctT11B.1.220.001318
ORF1ab/nsp31408L1408delCTG---11B.1.258.100.011364
ORF1ab/nsp31408L1408LCtgTtg11B.1.258.110.000396
ORF1ab/nsp31408L1408LCtgTtg11B.1.258.170.000104
ORF1ab/nsp31408L1408LCtgTtg11B.1.258.70.001912
ORF1ab/nsp31408L1408LctGctT11B.1.3010.005917
ORF1ab/nsp31408L1408delCTG---11B.1.3510.00003
ORF1ab/nsp31408L1408LctGctT11B.1.351.20.000303
ORF1ab/nsp31408L1408delCTG---11B.1.36.220.001208
ORF1ab/nsp31408L1408LCtgTtg11B.1.36.250.002208
ORF1ab/nsp31408L1408LCtgTtg11B.1.36.350.002604
ORF1ab/nsp31408L1408delCTG---11B.1.36.380.001642
ORF1ab/nsp31408L1408LCtgTtg11B.1.3690.000285
ORF1ab/nsp31408L1408LCtgTtg11B.1.3820.008929
ORF1ab/nsp31408L1408delCTG---11B.1.3890.001002
ORF1ab/nsp31408L1408LCtgTtg11B.1.3890.001002
ORF1ab/nsp31408L1408QcTgcAg11B.1.3990.001934
ORF1ab/nsp31408L1408delCTG---11B.1.4090.000781
ORF1ab/nsp31408L1408TCTGACA11B.1.4150.014286
ORF1ab/nsp31408L1408delCTG---11B.1.416.10.001563
ORF1ab/nsp31408L1408LCtgTtg11B.1.416.10.001563
ORF1ab/nsp31408L1408QcTgcAg11B.1.4270.00005
ORF1ab/nsp31408L1408PcTgcCg11B.1.4290.000024
ORF1ab/nsp31408L1408LCtgTtg11B.1.4590.004082
ORF1ab/nsp31408L1408LCtgTtg11B.1.466.20.000391
ORF1ab/nsp31408L1408PcTgcCg11B.1.4690.00361
ORF1ab/nsp31408L1408LCtgTtg11B.1.4740.001901
ORF1ab/nsp31408L1408LCtgTtg11B.1.5170.000427
ORF1ab/nsp31408L1408PcTgcCg11B.1.5240.001406
ORF1ab/nsp31408L1408MCtgAtg11B.1.5240.001406
ORF1ab/nsp31408L1408MCtgAtg11B.1.5680.001111
ORF1ab/nsp31408L1408delCTG---11B.1.5750.000303
ORF1ab/nsp31408L1408MCtgAtg11B.1.5820.000491
ORF1ab/nsp31408L1408LCtgTtg11B.1.5820.000491
ORF1ab/nsp31408L1408LCtgTtg11B.1.5950.000261
ORF1ab/nsp31408L1408ICtGAtT11B.1.617.10.000129
ORF1ab/nsp31408L1408MCtgAtg11B.1.617.10.000129
ORF1ab/nsp31408L1408KCTgAAg11B.1.617.10.000129
ORF1ab/nsp31408L1408NCTGAAT11B.1.617.10.000129
ORF1ab/nsp31408L1408HcTGcAT11B.1.617.10.000129
ORF1ab/nsp31408L1408QcTgcAg11B.1.617.10.000129
ORF1ab/nsp31408L1408FCtGTtT11B.1.617.20.000004
ORF1ab/nsp31408L1408TCTGACT11B.1.617.20.000004
ORF1ab/nsp31408L1408delCTG---11B.1.6210.000089
ORF1ab/nsp31408L1408LCtgTtg11B.1.6260.005714
ORF1ab/nsp31408L1408delCTG---11B.1.6300.005236
ORF1ab/nsp31408L1408delCTG---11B.1.6370.000073
ORF1ab/nsp31408L1408LCtgTtg11B.1.780.008547
ORF1ab/nsp31408L1408LctGctT11B.1.9.50.005682
ORF1ab/nsp31408L1408LCtgTtg11B.1.910.002075
ORF1ab/nsp31408L1408XCTgTAg11B.1.910.002075
ORF1ab/nsp31408L1408QcTgcAg11B.1.910.002075
ORF1ab/nsp31408L1408LCtgTtg11B.30.000831
ORF1ab/nsp31408L1408delCTG---11B.400.000364
ORF1ab/nsp31408L1408QcTgcAg11B.60.00091
ORF1ab/nsp31408L1408PcTgcCg11B.60.00091
ORF1ab/nsp31408L1408LCtgTtg11C.160.00106
ORF1ab/nsp31408L1408LCtgTtg11C.170.055556
ORF1ab/nsp31408L1408del1ctGct-11C.350.000774
ORF1ab/nsp31408L1408LCtgTtg11C.36.10.004149
ORF1ab/nsp31408L1408LCtgTtg11C.36.3.10.002717
ORF1ab/nsp31408L1408PcTgcCg11P.10.000016
ORF1ab/nsp31408L1408RcTgcGg11P.10.000016
ORF1ab/nsp31408L1408LCtgTtg11P.1.100.000269
ORF1ab/nsp31408L1408PcTgcCg11P.1.140.000048
ORF1ab/nsp31408L1408delCTG---11P.1.150.000232
ORF1ab/nsp31408L1408PcTgcCg11P.1.150.000232
ORF1ab/nsp31408L1408LCtgTtg11P.30.001595
ORF1ab/nsp31408L1408LCtgTtg11Q.10.000126
ORF1ab/nsp31408L1408LCtgTtg11R.10.00009
ORF1ab/nsp31408L1408LCtgTtg11U.30.003861
ORF1ab/nsp31408L1408LCtgTtg11W.30.005263