CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1406 | S1406F | S2224F | nonsyn | tCt | tTt | 7080 | 7077 | 0.999576 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406F | S2224F | nonsyn | tCT | tTC | 7080 | 3 | 0.000423729 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406P | S2224P | nonsyn | Tct | Cct | 795 | 794 | 0.998742 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406P | S2224P | nonsyn | TcT | CcG | 795 | 1 | 0.00125786 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406A | S2224A | nonsyn | Tct | Gct | 358 | 356 | 0.994413 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406A | S2224A | nonsyn | TcT | GcA | 358 | 2 | 0.00558659 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406S | S2224S | syn | tcT | tcC | 330 | 225 | 0.681818 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406S | S2224S | syn | tcT | tcA | 330 | 103 | 0.312121 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406S | S2224S | syn | tcT | tcG | 330 | 2 | 0.00606061 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406del | S2224del | del | TCT | --- | 253 | 253 | 1 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406Y | S2224Y | nonsyn | tCt | tAt | 60 | 59 | 0.983333 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406Y | S2224Y | nonsyn | tCT | tAC | 60 | 1 | 0.0166667 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406C | S2224C | nonsyn | tCt | tGt | 12 | 11 | 0.916667 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406C | S2224C | nonsyn | tCT | tGC | 12 | 1 | 0.0833333 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406T | S2224T | nonsyn | Tct | Act | 6 | 3 | 0.5 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406T | S2224T | nonsyn | TcT | AcC | 6 | 2 | 0.333333 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406T | S2224T | nonsyn | TcT | AcA | 6 | 1 | 0.166667 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406del1 | S2224del1 | del | tcT | tc- | 4 | 3 | 0.75 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406del1 | S2224del1 | del | tCT | t-A | 4 | 1 | 0.25 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406L | S2224L | nonsyn | tCT | tTA | 3 | 3 | 1 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406del2 | S2224del2 | del | TCt | --t | 3 | 2 | 0.666667 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406del2 | S2224del2 | del | tCT | t-- | 3 | 1 | 0.333333 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406M | S2224M | nonsyn | TCT | ATG | 2 | 2 | 1 | 6935-6937 |
ORF1ab/nsp3 | 1406 | S1406X | S2224X | nonsyn | tCT | tAA | 1 | 1 | 1 | 6935-6937 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 7077 | 7080 | All | 0.001354 |
ORF1ab/nsp3 | 1406 | S1406F | tCT | tTC | 3 | 7080 | All | 0.000001 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2194 | 2194 | B.1.575 | 0.665655 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1243 | 1244 | B.1.1.7 | 0.001113 |
ORF1ab/nsp3 | 1406 | S1406F | tCT | tTC | 1 | 1244 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 794 | 795 | All | 0.000152 |
ORF1ab/nsp3 | 1406 | S1406P | TcT | CcG | 1 | 795 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 737 | 737 | AY.4 | 0.001147 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 468 | 468 | AY.3 | 0.004655 |
ORF1ab/nsp3 | 1406 | S1406A | Tct | Gct | 356 | 358 | All | 0.000068 |
ORF1ab/nsp3 | 1406 | S1406A | TcT | GcA | 2 | 358 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406A | Tct | Gct | 348 | 350 | B.1.1.7 | 0.000312 |
ORF1ab/nsp3 | 1406 | S1406A | TcT | GcA | 2 | 350 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 225 | 330 | All | 0.000043 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 103 | 330 | All | 0.00002 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcG | 2 | 330 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 320 | 320 | AY.4 | 0.000498 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 254 | 254 | AY.120.1 | 0.081541 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 253 | 253 | All | 0.000048 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 241 | 241 | B.1.617.2 | 0.000907 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 224 | 224 | AY.25 | 0.001347 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 164 | 164 | B.1.575.2 | 0.788462 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 134 | 134 | AY.43 | 0.000594 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 109 | 109 | B.1.575.1 | 0.265854 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 99 | 99 | AY.44 | 0.000603 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 84 | 84 | AY.42 | 0.003379 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 78 | 78 | AY.103 | 0.000484 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 73 | 73 | B.1.1.7 | 0.000065 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 71 | 72 | B.1.1 | 0.001288 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 72 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 64 | 64 | B.1 | 0.000586 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 64 | 64 | B.1.2 | 0.000564 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 59 | 60 | All | 0.000011 |
ORF1ab/nsp3 | 1406 | S1406Y | tCT | tAC | 1 | 60 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 56 | 56 | P.1.14 | 0.002677 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 52 | 52 | B.1.1 | 0.000943 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 52 | 52 | B.1.1.294 | 0.065823 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 49 | 49 | B.1.1.222 | 0.009996 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 46 | 47 | AY.4 | 0.000072 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 47 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 47 | 47 | B.1.351 | 0.001397 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 44 | 44 | B.1.177 | 0.000579 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 44 | 44 | B.1.596 | 0.003834 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 42 | 42 | AY.47 | 0.001306 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 40 | 40 | B.1.177.12 | 0.006068 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 38 | 38 | B.1.1.7 | 0.000034 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 38 | 38 | B.1.36.1 | 0.04333 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 36 | 36 | AY.39 | 0.00089 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 33 | 33 | P.1 | 0.00052 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 32 | 32 | AY.77 | 0.036077 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 30 | 30 | B.1.258 | 0.001996 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 29 | 29 | B.1.565 | 0.023501 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 23 | 23 | AY.25 | 0.000138 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 23 | 23 | B.1.1.207 | 0.027187 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 22 | 22 | B.1.595 | 0.005741 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 21 | 21 | AY.120 | 0.000781 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 21 | 21 | B.1.577 | 0.014433 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 20 | 20 | AY.42 | 0.000805 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 17 | 17 | B.1.160 | 0.00053 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 17 | 17 | B.1.258.17 | 0.001768 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 15 | 16 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 1406 | S1406Y | tCT | tAC | 1 | 16 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 15 | 15 | B.1.1.204 | 0.045593 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 15 | 15 | B.1.617.2 | 0.000056 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 14 | 14 | A.1 | 0.003946 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 14 | 14 | AY.116 | 0.004015 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 13 | 13 | AY.4.5 | 0.001397 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 13 | 13 | AY.98.1 | 0.00063 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 11 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 1406 | S1406C | tCT | tGC | 1 | 12 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 12 | 12 | AY.106 | 0.004019 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 12 | 12 | AY.38 | 0.005991 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 12 | 12 | B.1.1.301 | 0.014151 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 12 | 12 | B.1.612 | 0.03183 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 10 | 10 | P.1.7 | 0.003193 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 7 | 8 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 8 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 7 | 8 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 8 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 7 | 7 | AE.8 | 0.003423 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 6 | 7 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 7 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 7 | 7 | B.1.497 | 0.002203 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp3 | 1406 | S1406T | Tct | Act | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1406 | S1406T | TcT | AcC | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406T | TcT | AcA | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 3 | 5 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 2 | 5 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | AY.7.2 | 0.002796 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | B.1.177.18 | 0.0058 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 4 | 5 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 1406 | S1406F | tCT | tTC | 1 | 5 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 5 | 5 | C.38 | 0.040323 |
ORF1ab/nsp3 | 1406 | S1406del1 | tcT | tc- | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1406 | S1406del1 | tCT | t-A | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 4 | 4 | B.1.375 | 0.003279 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 4 | 4 | B.1.466.1 | 0.028777 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 4 | 4 | B.1.517 | 0.001708 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1406 | S1406L | tCT | tTA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1406 | S1406del2 | TCt | --t | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406del2 | tCT | t-- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1406 | S1406A | Tct | Gct | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | B.1.1.521 | 0.016043 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1406 | S1406P | TcT | CcG | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp3 | 1406 | S1406M | TCT | ATG | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | A.29 | 0.010638 |
ORF1ab/nsp3 | 1406 | S1406M | TCT | ATG | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1406 | S1406A | Tct | Gct | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.72 | 0.002721 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 2 | 2 | B.1.1.145 | 0.074074 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 2 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 2 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1406 | S1406F | tCT | tTC | 1 | 2 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 2 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1406 | S1406T | Tct | Act | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1406 | S1406C | tCT | tGC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcG | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B.1.36.34 | 0.042553 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B.1.585 | 0.055556 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1406 | S1406T | Tct | Act | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1406 | S1406T | TcT | AcC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcG | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AA.2 | 0.007692 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1406 | S1406X | tCT | tAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1406 | S1406A | Tct | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1406 | S1406del2 | TCt | --t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406del1 | tCT | t-A | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.347 | 0.018182 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.435 | 0.034483 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1406 | S1406L | tCT | tTA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.1.97 | 0.029412 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.165 | 0.011905 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1406 | S1406del2 | tCT | t-- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1406 | S1406X | tCT | tAA | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1406 | S1406A | Tct | Gct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1406 | S1406L | tCT | tTA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1406 | S1406del1 | tcT | tc- | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 1406 | S1406del2 | TCt | --t | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1406 | S1406P | Tct | Cct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp3 | 1406 | S1406T | TcT | AcA | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1406 | S1406L | tCT | tTA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1406 | S1406A | Tct | Gct | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1406 | S1406del1 | tcT | tc- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1406 | S1406Y | tCt | tAt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1406 | S1406T | TcT | AcC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1406 | S1406C | tCt | tGt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1406 | S1406S | tcT | tcC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1406 | S1406del1 | tcT | tc- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1406 | S1406del | TCT | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1406 | S1406F | tCt | tTt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|