CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1406

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31406S1406FS2224FnonsyntCttTt708070770.9995766935-6937
ORF1ab/nsp31406S1406FS2224FnonsyntCTtTC708030.0004237296935-6937
ORF1ab/nsp31406S1406PS2224PnonsynTctCct7957940.9987426935-6937
ORF1ab/nsp31406S1406PS2224PnonsynTcTCcG79510.001257866935-6937
ORF1ab/nsp31406S1406AS2224AnonsynTctGct3583560.9944136935-6937
ORF1ab/nsp31406S1406AS2224AnonsynTcTGcA35820.005586596935-6937
ORF1ab/nsp31406S1406SS2224SsyntcTtcC3302250.6818186935-6937
ORF1ab/nsp31406S1406SS2224SsyntcTtcA3301030.3121216935-6937
ORF1ab/nsp31406S1406SS2224SsyntcTtcG33020.006060616935-6937
ORF1ab/nsp31406S1406delS2224deldelTCT---25325316935-6937
ORF1ab/nsp31406S1406YS2224YnonsyntCttAt60590.9833336935-6937
ORF1ab/nsp31406S1406YS2224YnonsyntCTtAC6010.01666676935-6937
ORF1ab/nsp31406S1406CS2224CnonsyntCttGt12110.9166676935-6937
ORF1ab/nsp31406S1406CS2224CnonsyntCTtGC1210.08333336935-6937
ORF1ab/nsp31406S1406TS2224TnonsynTctAct630.56935-6937
ORF1ab/nsp31406S1406TS2224TnonsynTcTAcC620.3333336935-6937
ORF1ab/nsp31406S1406TS2224TnonsynTcTAcA610.1666676935-6937
ORF1ab/nsp31406S1406del1S2224del1deltcTtc-430.756935-6937
ORF1ab/nsp31406S1406del1S2224del1deltCTt-A410.256935-6937
ORF1ab/nsp31406S1406LS2224LnonsyntCTtTA3316935-6937
ORF1ab/nsp31406S1406del2S2224del2delTCt--t320.6666676935-6937
ORF1ab/nsp31406S1406del2S2224del2deltCTt--310.3333336935-6937
ORF1ab/nsp31406S1406MS2224MnonsynTCTATG2216935-6937
ORF1ab/nsp31406S1406XS2224XnonsyntCTtAA1116935-6937

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31406S1406FtCttTt70777080All0.001354
ORF1ab/nsp31406S1406FtCTtTC37080All0.000001
ORF1ab/nsp31406S1406FtCttTt21942194B.1.5750.665655
ORF1ab/nsp31406S1406FtCttTt12431244B.1.1.70.001113
ORF1ab/nsp31406S1406FtCTtTC11244B.1.1.70.000001
ORF1ab/nsp31406S1406PTctCct794795All0.000152
ORF1ab/nsp31406S1406PTcTCcG1795All0
ORF1ab/nsp31406S1406PTctCct737737AY.40.001147
ORF1ab/nsp31406S1406FtCttTt468468AY.30.004655
ORF1ab/nsp31406S1406ATctGct356358All0.000068
ORF1ab/nsp31406S1406ATcTGcA2358All0
ORF1ab/nsp31406S1406ATctGct348350B.1.1.70.000312
ORF1ab/nsp31406S1406ATcTGcA2350B.1.1.70.000002
ORF1ab/nsp31406S1406StcTtcC225330All0.000043
ORF1ab/nsp31406S1406StcTtcA103330All0.00002
ORF1ab/nsp31406S1406StcTtcG2330All0
ORF1ab/nsp31406S1406FtCttTt320320AY.40.000498
ORF1ab/nsp31406S1406FtCttTt254254AY.120.10.081541
ORF1ab/nsp31406S1406delTCT---253253All0.000048
ORF1ab/nsp31406S1406FtCttTt241241B.1.617.20.000907
ORF1ab/nsp31406S1406FtCttTt224224AY.250.001347
ORF1ab/nsp31406S1406FtCttTt164164B.1.575.20.788462
ORF1ab/nsp31406S1406FtCttTt134134AY.430.000594
ORF1ab/nsp31406S1406FtCttTt109109B.1.575.10.265854
ORF1ab/nsp31406S1406FtCttTt9999AY.440.000603
ORF1ab/nsp31406S1406FtCttTt8484AY.420.003379
ORF1ab/nsp31406S1406FtCttTt7878AY.1030.000484
ORF1ab/nsp31406S1406delTCT---7373B.1.1.70.000065
ORF1ab/nsp31406S1406StcTtcA7172B.1.10.001288
ORF1ab/nsp31406S1406StcTtcC172B.1.10.000018
ORF1ab/nsp31406S1406FtCttTt6464B.10.000586
ORF1ab/nsp31406S1406FtCttTt6464B.1.20.000564
ORF1ab/nsp31406S1406YtCttAt5960All0.000011
ORF1ab/nsp31406S1406YtCTtAC160All0
ORF1ab/nsp31406S1406FtCttTt5656P.1.140.002677
ORF1ab/nsp31406S1406FtCttTt5252B.1.10.000943
ORF1ab/nsp31406S1406FtCttTt5252B.1.1.2940.065823
ORF1ab/nsp31406S1406FtCttTt4949B.1.1.2220.009996
ORF1ab/nsp31406S1406StcTtcC4647AY.40.000072
ORF1ab/nsp31406S1406StcTtcA147AY.40.000002
ORF1ab/nsp31406S1406FtCttTt4747B.1.3510.001397
ORF1ab/nsp31406S1406FtCttTt4444B.1.1770.000579
ORF1ab/nsp31406S1406FtCttTt4444B.1.5960.003834
ORF1ab/nsp31406S1406FtCttTt4242AY.470.001306
ORF1ab/nsp31406S1406FtCttTt4040B.1.177.120.006068
ORF1ab/nsp31406S1406StcTtcC3838B.1.1.70.000034
ORF1ab/nsp31406S1406FtCttTt3838B.1.36.10.04333
ORF1ab/nsp31406S1406FtCttTt3636AY.390.00089
ORF1ab/nsp31406S1406FtCttTt3333P.10.00052
ORF1ab/nsp31406S1406FtCttTt3232AY.770.036077
ORF1ab/nsp31406S1406FtCttTt3030B.1.2580.001996
ORF1ab/nsp31406S1406FtCttTt2929B.1.5650.023501
ORF1ab/nsp31406S1406StcTtcC2323AY.250.000138
ORF1ab/nsp31406S1406FtCttTt2323B.1.1.2070.027187
ORF1ab/nsp31406S1406FtCttTt2222B.1.5950.005741
ORF1ab/nsp31406S1406FtCttTt2121AY.1200.000781
ORF1ab/nsp31406S1406FtCttTt2121B.1.5770.014433
ORF1ab/nsp31406S1406delTCT---2020AY.40.000031
ORF1ab/nsp31406S1406StcTtcC2020AY.420.000805
ORF1ab/nsp31406S1406FtCttTt1818B.1.4290.000424
ORF1ab/nsp31406S1406FtCttTt1717B.1.1600.00053
ORF1ab/nsp31406S1406FtCttTt1717B.1.258.170.001768
ORF1ab/nsp31406S1406YtCttAt1516B.1.1.70.000013
ORF1ab/nsp31406S1406YtCTtAC116B.1.1.70.000001
ORF1ab/nsp31406S1406delTCT---1616B.1.1770.000211
ORF1ab/nsp31406S1406FtCttTt1515B.1.1.2040.045593
ORF1ab/nsp31406S1406StcTtcC1515B.1.617.20.000056
ORF1ab/nsp31406S1406FtCttTt1414A.10.003946
ORF1ab/nsp31406S1406FtCttTt1414AY.1160.004015
ORF1ab/nsp31406S1406FtCttTt1414B.1.4270.000707
ORF1ab/nsp31406S1406PTctCct1414B.1.617.20.000053
ORF1ab/nsp31406S1406FtCttTt1313AY.1000.000598
ORF1ab/nsp31406S1406FtCttTt1313AY.4.50.001397
ORF1ab/nsp31406S1406FtCttTt1313AY.98.10.00063
ORF1ab/nsp31406S1406delTCT---1313B.10.000119
ORF1ab/nsp31406S1406CtCttGt1112All0.000002
ORF1ab/nsp31406S1406CtCTtGC112All0
ORF1ab/nsp31406S1406FtCttTt1212AY.1060.004019
ORF1ab/nsp31406S1406FtCttTt1212AY.380.005991
ORF1ab/nsp31406S1406FtCttTt1212B.1.1.3010.014151
ORF1ab/nsp31406S1406FtCttTt1212B.1.5260.000282
ORF1ab/nsp31406S1406FtCttTt1212B.1.6120.03183
ORF1ab/nsp31406S1406FtCttTt1111AY.1020.000292
ORF1ab/nsp31406S1406FtCttTt1111AY.290.000174
ORF1ab/nsp31406S1406FtCttTt1111AY.50.000227
ORF1ab/nsp31406S1406FtCttTt1010AY.230.000697
ORF1ab/nsp31406S1406StcTtcC1010AY.440.000061
ORF1ab/nsp31406S1406PTctCct1010B.1.1.70.000009
ORF1ab/nsp31406S1406delTCT---1010B.1.20.000088
ORF1ab/nsp31406S1406FtCttTt1010P.1.70.003193
ORF1ab/nsp31406S1406FtCttTt99AY.330.000601
ORF1ab/nsp31406S1406FtCttTt99B.1.2340.001187
ORF1ab/nsp31406S1406YtCttAt99B.1.5250.001018
ORF1ab/nsp31406S1406FtCttTt99C.370.001045
ORF1ab/nsp31406S1406FtCttTt88AY.1170.000676
ORF1ab/nsp31406S1406FtCttTt88AY.260.000226
ORF1ab/nsp31406S1406StcTtcA78AY.30.00007
ORF1ab/nsp31406S1406StcTtcC18AY.30.00001
ORF1ab/nsp31406S1406StcTtcC88AY.360.001186
ORF1ab/nsp31406S1406FtCttTt88AY.4.20.000174
ORF1ab/nsp31406S1406StcTtcA78B.10.000064
ORF1ab/nsp31406S1406StcTtcC18B.10.000009
ORF1ab/nsp31406S1406delTCT---88B.1.10.000145
ORF1ab/nsp31406S1406FtCttTt88B.1.2430.000557
ORF1ab/nsp31406S1406delTCT---88B.1.617.20.00003
ORF1ab/nsp31406S1406FtCttTt77AE.80.003423
ORF1ab/nsp31406S1406StcTtcC77AY.1030.000043
ORF1ab/nsp31406S1406FtCttTt77AY.1190.000247
ORF1ab/nsp31406S1406FtCttTt77AY.9.20.000257
ORF1ab/nsp31406S1406StcTtcC67B.1.1.5190.000238
ORF1ab/nsp31406S1406StcTtcA17B.1.1.5190.00004
ORF1ab/nsp31406S1406FtCttTt77B.1.4970.002203
ORF1ab/nsp31406S1406FtCttTt77B.1.6370.000512
ORF1ab/nsp31406S1406delTCT---660.333333
ORF1ab/nsp31406S1406TTctAct36All0.000001
ORF1ab/nsp31406S1406TTcTAcC26All0
ORF1ab/nsp31406S1406TTcTAcA16All0
ORF1ab/nsp31406S1406FtCttTt66AY.200.000233
ORF1ab/nsp31406S1406delTCT---66AY.430.000027
ORF1ab/nsp31406S1406FtCttTt66B.1.1.5190.000238
ORF1ab/nsp31406S1406StcTtcC55AY.1190.000177
ORF1ab/nsp31406S1406FtCttTt55AY.120.00158
ORF1ab/nsp31406S1406StcTtcC35AY.430.000013
ORF1ab/nsp31406S1406StcTtcA25AY.430.000009
ORF1ab/nsp31406S1406FtCttTt55AY.7.20.002796
ORF1ab/nsp31406S1406FtCttTt55AY.750.00028
ORF1ab/nsp31406S1406FtCttTt55AY.880.004421
ORF1ab/nsp31406S1406FtCttTt55AY.9.10.000419
ORF1ab/nsp31406S1406FtCttTt55AY.99.20.000461
ORF1ab/nsp31406S1406FtCttTt55B.1.1.2140.000277
ORF1ab/nsp31406S1406FtCttTt55B.1.177.180.0058
ORF1ab/nsp31406S1406FtCttTt45B.1.617.10.000516
ORF1ab/nsp31406S1406FtCTtTC15B.1.617.10.000129
ORF1ab/nsp31406S1406FtCttTt55B.1.6210.000443
ORF1ab/nsp31406S1406FtCttTt55C.380.040323
ORF1ab/nsp31406S1406del1tcTtc-34All0.000001
ORF1ab/nsp31406S1406del1tCTt-A14All0
ORF1ab/nsp31406S1406delTCT---44AY.200.000155
ORF1ab/nsp31406S1406FtCttTt44AY.610.000419
ORF1ab/nsp31406S1406FtCttTt44B.1.1.3060.001754
ORF1ab/nsp31406S1406delTCT---44B.1.2210.000284
ORF1ab/nsp31406S1406FtCttTt44B.1.3750.003279
ORF1ab/nsp31406S1406FtCttTt44B.1.466.10.028777
ORF1ab/nsp31406S1406FtCttTt44B.1.5170.001708
ORF1ab/nsp31406S1406FtCttTt44P.20.000747
ORF1ab/nsp31406S1406LtCTtTA33All0.000001
ORF1ab/nsp31406S1406del2TCt--t23All0
ORF1ab/nsp31406S1406del2tCTt--13All0
ORF1ab/nsp31406S1406YtCttAt33AY.1020.00008
ORF1ab/nsp31406S1406delTCT---33AY.1030.000019
ORF1ab/nsp31406S1406FtCttTt33AY.1110.000549
ORF1ab/nsp31406S1406delTCT---33AY.250.000018
ORF1ab/nsp31406S1406StcTtcC33AY.270.000194
ORF1ab/nsp31406S1406FtCttTt33AY.29.10.000662
ORF1ab/nsp31406S1406delTCT---33AY.30.00003
ORF1ab/nsp31406S1406FtCttTt33AY.3.10.000256
ORF1ab/nsp31406S1406ATctGct33AY.40.000005
ORF1ab/nsp31406S1406YtCttAt33AY.40.000005
ORF1ab/nsp31406S1406FtCttTt33AY.450.000365
ORF1ab/nsp31406S1406FtCttTt33AY.460.000312
ORF1ab/nsp31406S1406StcTtcC33AY.50.000062
ORF1ab/nsp31406S1406FtCttTt33AY.540.000286
ORF1ab/nsp31406S1406FtCttTt33AY.950.002283
ORF1ab/nsp31406S1406delTCT---33AY.98.10.000145
ORF1ab/nsp31406S1406FtCttTt33B.1.1.2160.002671
ORF1ab/nsp31406S1406FtCttTt33B.1.1.2840.000322
ORF1ab/nsp31406S1406FtCttTt33B.1.1.5210.016043
ORF1ab/nsp31406S1406FtCttTt33B.1.1390.002199
ORF1ab/nsp31406S1406StcTtcC33B.1.1770.00004
ORF1ab/nsp31406S1406FtCttTt33B.1.177.860.00055
ORF1ab/nsp31406S1406PTctCct23B.1.20.000018
ORF1ab/nsp31406S1406PTcTCcG13B.1.20.000009
ORF1ab/nsp31406S1406FtCttTt33B.1.2210.000213
ORF1ab/nsp31406S1406YtCttAt33B.1.3510.000089
ORF1ab/nsp31406S1406FtCttTt33B.1.360.000438
ORF1ab/nsp31406S1406StcTtcC33B.1.5260.000071
ORF1ab/nsp31406S1406FtCttTt33B.1.5640.001278
ORF1ab/nsp31406S1406delTCT---33B.1.5960.000261
ORF1ab/nsp31406S1406YtCttAt33B.1.617.20.000011
ORF1ab/nsp31406S1406StcTtcC33B.1.6210.000266
ORF1ab/nsp31406S1406FtCttTt33B.1.6230.001609
ORF1ab/nsp31406S1406MTCTATG220.111111
ORF1ab/nsp31406S1406FtCttTt22A.290.010638
ORF1ab/nsp31406S1406MTCTATG22All0
ORF1ab/nsp31406S1406StcTtcC22AY.1010.000981
ORF1ab/nsp31406S1406StcTtcC22AY.1020.000053
ORF1ab/nsp31406S1406FtCttTt22AY.1130.000285
ORF1ab/nsp31406S1406PTctCct22AY.1200.000074
ORF1ab/nsp31406S1406FtCttTt22AY.1210.000271
ORF1ab/nsp31406S1406StcTtcC22AY.230.000139
ORF1ab/nsp31406S1406PTctCct22AY.230.000139
ORF1ab/nsp31406S1406FtCttTt22AY.240.000862
ORF1ab/nsp31406S1406PTctCct22AY.30.00002
ORF1ab/nsp31406S1406StcTtcC22AY.390.000049
ORF1ab/nsp31406S1406PTctCct22AY.4.40.000818
ORF1ab/nsp31406S1406YtCttAt22AY.4.50.000215
ORF1ab/nsp31406S1406delTCT---22AY.4.50.000215
ORF1ab/nsp31406S1406ATctGct22AY.430.000009
ORF1ab/nsp31406S1406PTctCct22AY.430.000009
ORF1ab/nsp31406S1406FtCttTt22AY.510.001818
ORF1ab/nsp31406S1406FtCttTt22AY.70.000392
ORF1ab/nsp31406S1406FtCttTt22AY.720.002721
ORF1ab/nsp31406S1406FtCttTt22AY.740.000231
ORF1ab/nsp31406S1406StcTtcC22AY.820.002714
ORF1ab/nsp31406S1406FtCttTt22AY.840.000875
ORF1ab/nsp31406S1406FtCttTt22AY.90.000135
ORF1ab/nsp31406S1406FtCttTt22AY.920.000575
ORF1ab/nsp31406S1406FtCttTt22AY.930.000546
ORF1ab/nsp31406S1406FtCttTt22B0.000256
ORF1ab/nsp31406S1406FtCttTt22B.1.1.10.000653
ORF1ab/nsp31406S1406StcTtcA22B.1.1.1450.074074
ORF1ab/nsp31406S1406StcTtcA12B.1.1.2770.000759
ORF1ab/nsp31406S1406FtCttTt12B.1.1.2770.000759
ORF1ab/nsp31406S1406FtCTtTC12B.1.1.2770.000759
ORF1ab/nsp31406S1406StcTtcC12B.1.1.2770.000759
ORF1ab/nsp31406S1406PTctCct22B.1.1.390.001019
ORF1ab/nsp31406S1406TTctAct22B.1.1.70.000002
ORF1ab/nsp31406S1406CtCttGt12B.1.1.70.000001
ORF1ab/nsp31406S1406CtCTtGC12B.1.1.70.000001
ORF1ab/nsp31406S1406FtCttTt22B.1.1.700.000682
ORF1ab/nsp31406S1406FtCttTt22B.1.110.30.001437
ORF1ab/nsp31406S1406PTctCct22B.1.1770.000026
ORF1ab/nsp31406S1406YtCttAt22B.1.1770.000026
ORF1ab/nsp31406S1406delTCT---22B.1.177.40.000422
ORF1ab/nsp31406S1406FtCttTt22B.1.177.730.001133
ORF1ab/nsp31406S1406YtCttAt22B.1.20.000018
ORF1ab/nsp31406S1406StcTtcA12B.1.20.000009
ORF1ab/nsp31406S1406StcTtcG12B.1.20.000009
ORF1ab/nsp31406S1406delTCT---22B.1.2340.000264
ORF1ab/nsp31406S1406delTCT---22B.1.2580.000133
ORF1ab/nsp31406S1406FtCttTt22B.1.258.30.00335
ORF1ab/nsp31406S1406delTCT---22B.1.3110.000549
ORF1ab/nsp31406S1406FtCttTt22B.1.36.340.042553
ORF1ab/nsp31406S1406FtCttTt22B.1.4090.001563
ORF1ab/nsp31406S1406delTCT---22B.1.5170.000854
ORF1ab/nsp31406S1406delTCT---22B.1.5250.000226
ORF1ab/nsp31406S1406FtCttTt22B.1.5850.055556
ORF1ab/nsp31406S1406CtCttGt22B.1.5960.000174
ORF1ab/nsp31406S1406StcTtcA12B.1.617.10.000129
ORF1ab/nsp31406S1406StcTtcC12B.1.617.10.000129
ORF1ab/nsp31406S1406TTctAct12B.1.617.20.000004
ORF1ab/nsp31406S1406TTcTAcC12B.1.617.20.000004
ORF1ab/nsp31406S1406FtCttTt22B.1.621.10.001012
ORF1ab/nsp31406S1406FtCttTt22C.350.001548
ORF1ab/nsp31406S1406FtCttTt22D.20.00015
ORF1ab/nsp31406S1406YtCttAt22P.10.000032
ORF1ab/nsp31406S1406delTCT---22P.10.000032
ORF1ab/nsp31406S1406StcTtcG12P.10.000016
ORF1ab/nsp31406S1406StcTtcC12P.10.000016
ORF1ab/nsp31406S1406YtCttAt22P.1.10.000635
ORF1ab/nsp31406S1406FtCttTt22Q.10.000253
ORF1ab/nsp31406S1406CtCttGt110.055556
ORF1ab/nsp31406S1406FtCttTt11A.20.000662
ORF1ab/nsp31406S1406delTCT---11A.2.40.003367
ORF1ab/nsp31406S1406CtCttGt11A.2.40.003367
ORF1ab/nsp31406S1406FtCttTt11A.210.00277
ORF1ab/nsp31406S1406delTCT---11A.280.002646
ORF1ab/nsp31406S1406FtCttTt11AA.20.007692
ORF1ab/nsp31406S1406FtCttTt11AD.20.000219
ORF1ab/nsp31406S1406XtCTtAA11All0
ORF1ab/nsp31406S1406FtCttTt11AY.1010.00049
ORF1ab/nsp31406S1406PTctCct11AY.1030.000006
ORF1ab/nsp31406S1406StcTtcC11AY.1040.001984
ORF1ab/nsp31406S1406FtCttTt11AY.1050.000643
ORF1ab/nsp31406S1406FtCttTt11AY.1090.00074
ORF1ab/nsp31406S1406StcTtcC11AY.1140.000231
ORF1ab/nsp31406S1406FtCttTt11AY.1180.000063
ORF1ab/nsp31406S1406delTCT---11AY.1200.000037
ORF1ab/nsp31406S1406StcTtcA11AY.140.000088
ORF1ab/nsp31406S1406PTctCct11AY.140.000088
ORF1ab/nsp31406S1406FtCttTt11AY.140.000088
ORF1ab/nsp31406S1406PTctCct11AY.160.00038
ORF1ab/nsp31406S1406FtCttTt11AY.16.10.00047
ORF1ab/nsp31406S1406FtCttTt11AY.210.001898
ORF1ab/nsp31406S1406delTCT---11AY.240.000431
ORF1ab/nsp31406S1406delTCT---11AY.260.000028
ORF1ab/nsp31406S1406FtCttTt11AY.270.000065
ORF1ab/nsp31406S1406YtCttAt11AY.30.00001
ORF1ab/nsp31406S1406ATctGct11AY.30.00001
ORF1ab/nsp31406S1406PTctCct11AY.320.000532
ORF1ab/nsp31406S1406FtCttTt11AY.320.000532
ORF1ab/nsp31406S1406YtCttAt11AY.360.000148
ORF1ab/nsp31406S1406delTCT---11AY.360.000148
ORF1ab/nsp31406S1406FtCttTt11AY.360.000148
ORF1ab/nsp31406S1406FtCttTt11AY.39.10.00004
ORF1ab/nsp31406S1406StcTtcC11AY.4.20.000022
ORF1ab/nsp31406S1406PTctCct11AY.410.000294
ORF1ab/nsp31406S1406PTctCct11AY.420.00004
ORF1ab/nsp31406S1406PTctCct11AY.440.000006
ORF1ab/nsp31406S1406delTCT---11AY.450.000122
ORF1ab/nsp31406S1406FtCttTt11AY.46.40.000165
ORF1ab/nsp31406S1406delTCT---11AY.46.40.000165
ORF1ab/nsp31406S1406StcTtcC11AY.46.40.000165
ORF1ab/nsp31406S1406FtCttTt11AY.46.60.000072
ORF1ab/nsp31406S1406StcTtcA11AY.470.000031
ORF1ab/nsp31406S1406delTCT---11AY.470.000031
ORF1ab/nsp31406S1406CtCttGt11AY.50.000021
ORF1ab/nsp31406S1406PTctCct11AY.50.000021
ORF1ab/nsp31406S1406delTCT---11AY.50.000021
ORF1ab/nsp31406S1406YtCttAt11AY.5.30.000337
ORF1ab/nsp31406S1406FtCttTt11AY.550.000917
ORF1ab/nsp31406S1406FtCttTt11AY.570.000656
ORF1ab/nsp31406S1406YtCttAt11AY.580.000907
ORF1ab/nsp31406S1406FtCttTt11AY.60.000041
ORF1ab/nsp31406S1406PTctCct11AY.60.000041
ORF1ab/nsp31406S1406delTCT---11AY.610.000105
ORF1ab/nsp31406S1406FtCttTt11AY.620.000436
ORF1ab/nsp31406S1406FtCttTt11AY.630.000387
ORF1ab/nsp31406S1406FtCttTt11AY.670.000464
ORF1ab/nsp31406S1406FtCttTt11AY.7.10.000113
ORF1ab/nsp31406S1406PTctCct11AY.7.10.000113
ORF1ab/nsp31406S1406delTCT---11AY.730.000665
ORF1ab/nsp31406S1406YtCttAt11AY.740.000116
ORF1ab/nsp31406S1406FtCttTt11AY.75.10.00018
ORF1ab/nsp31406S1406StcTtcC11AY.840.000437
ORF1ab/nsp31406S1406delTCT---11AY.840.000437
ORF1ab/nsp31406S1406delTCT---11AY.9.20.000037
ORF1ab/nsp31406S1406FtCttTt11AY.960.002075
ORF1ab/nsp31406S1406FtCttTt11AZ.20.000821
ORF1ab/nsp31406S1406PTctCct11B0.000128
ORF1ab/nsp31406S1406del2TCt--t11B.10.000009
ORF1ab/nsp31406S1406del1tCTt-A11B.10.000009
ORF1ab/nsp31406S1406CtCttGt11B.10.000009
ORF1ab/nsp31406S1406FtCttTt11B.1.1.1170.009709
ORF1ab/nsp31406S1406StcTtcA11B.1.1.130.035714
ORF1ab/nsp31406S1406FtCttTt11B.1.1.1700.001247
ORF1ab/nsp31406S1406delTCT---11B.1.1.1920.002309
ORF1ab/nsp31406S1406YtCttAt11B.1.1.1940.00495
ORF1ab/nsp31406S1406delTCT---11B.1.1.2180.007692
ORF1ab/nsp31406S1406FtCttTt11B.1.1.2290.005747
ORF1ab/nsp31406S1406delTCT---11B.1.1.2360.006897
ORF1ab/nsp31406S1406FtCttTt11B.1.1.280.000311
ORF1ab/nsp31406S1406PTctCct11B.1.1.3060.000438
ORF1ab/nsp31406S1406FtCttTt11B.1.1.3070.002532
ORF1ab/nsp31406S1406FtCttTt11B.1.1.310.066667
ORF1ab/nsp31406S1406delTCT---11B.1.1.3110.000358
ORF1ab/nsp31406S1406delTCT---11B.1.1.3120.001912
ORF1ab/nsp31406S1406delTCT---11B.1.1.3150.008475
ORF1ab/nsp31406S1406FtCttTt11B.1.1.3170.000412
ORF1ab/nsp31406S1406FtCttTt11B.1.1.3470.018182
ORF1ab/nsp31406S1406FtCttTt11B.1.1.3690.000446
ORF1ab/nsp31406S1406delTCT---11B.1.1.4090.002833
ORF1ab/nsp31406S1406FtCttTt11B.1.1.4160.000905
ORF1ab/nsp31406S1406FtCttTt11B.1.1.4350.034483
ORF1ab/nsp31406S1406FtCttTt11B.1.1.4480.002033
ORF1ab/nsp31406S1406StcTtcC11B.1.1.510.001718
ORF1ab/nsp31406S1406FtCttTt11B.1.1.5230.001563
ORF1ab/nsp31406S1406FtCttTt11B.1.1.580.005376
ORF1ab/nsp31406S1406FtCttTt11B.1.1.630.000386
ORF1ab/nsp31406S1406LtCTtTA11B.1.1.70.000001
ORF1ab/nsp31406S1406delTCT---11B.1.1.700.000341
ORF1ab/nsp31406S1406FtCttTt11B.1.1.970.029412
ORF1ab/nsp31406S1406FtCttTt11B.1.1110.001175
ORF1ab/nsp31406S1406PTctCct11B.1.1110.001175
ORF1ab/nsp31406S1406YtCttAt11B.1.1600.000031
ORF1ab/nsp31406S1406YtCttAt11B.1.160.220.006757
ORF1ab/nsp31406S1406delTCT---11B.1.160.70.002079
ORF1ab/nsp31406S1406FtCttTt11B.1.1650.011905
ORF1ab/nsp31406S1406CtCttGt11B.1.1770.000013
ORF1ab/nsp31406S1406del2tCTt--11B.1.1770.000013
ORF1ab/nsp31406S1406FtCttTt11B.1.177.150.000631
ORF1ab/nsp31406S1406delTCT---11B.1.177.150.000631
ORF1ab/nsp31406S1406delTCT---11B.1.177.160.000664
ORF1ab/nsp31406S1406delTCT---11B.1.177.180.00116
ORF1ab/nsp31406S1406StcTtcC11B.1.177.180.00116
ORF1ab/nsp31406S1406delTCT---11B.1.177.190.001431
ORF1ab/nsp31406S1406delTCT---11B.1.177.210.000076
ORF1ab/nsp31406S1406FtCttTt11B.1.177.420.000894
ORF1ab/nsp31406S1406FtCttTt11B.1.177.520.001757
ORF1ab/nsp31406S1406FtCttTt11B.1.177.530.002392
ORF1ab/nsp31406S1406delTCT---11B.1.177.540.000606
ORF1ab/nsp31406S1406delTCT---11B.1.177.560.000668
ORF1ab/nsp31406S1406delTCT---11B.1.177.570.000281
ORF1ab/nsp31406S1406delTCT---11B.1.177.60.000977
ORF1ab/nsp31406S1406delTCT---11B.1.177.620.001192
ORF1ab/nsp31406S1406delTCT---11B.1.177.680.015152
ORF1ab/nsp31406S1406delTCT---11B.1.177.70.000165
ORF1ab/nsp31406S1406FtCttTt11B.1.177.720.00339
ORF1ab/nsp31406S1406StcTtcA11B.1.177.730.000566
ORF1ab/nsp31406S1406StcTtcA11B.1.177.750.001041
ORF1ab/nsp31406S1406YtCttAt11B.1.177.750.001041
ORF1ab/nsp31406S1406XtCTtAA11B.1.177.750.001041
ORF1ab/nsp31406S1406delTCT---11B.1.177.810.000189
ORF1ab/nsp31406S1406PTctCct11B.1.177.810.000189
ORF1ab/nsp31406S1406FtCttTt11B.1.177.810.000189
ORF1ab/nsp31406S1406delTCT---11B.1.177.870.000728
ORF1ab/nsp31406S1406delTCT---11B.1.177.90.001332
ORF1ab/nsp31406S1406PTctCct11B.1.2060.000816
ORF1ab/nsp31406S1406StcTtcC11B.1.2210.000071
ORF1ab/nsp31406S1406ATctGct11B.1.2210.000071
ORF1ab/nsp31406S1406LtCTtTA11B.1.2210.000071
ORF1ab/nsp31406S1406StcTtcC11B.1.2360.002053
ORF1ab/nsp31406S1406FtCttTt11B.1.2400.000216
ORF1ab/nsp31406S1406YtCttAt11B.1.2430.00007
ORF1ab/nsp31406S1406delTCT---11B.1.258.100.011364
ORF1ab/nsp31406S1406FtCttTt11B.1.258.110.000396
ORF1ab/nsp31406S1406del1tcTtc-11B.1.258.140.00098
ORF1ab/nsp31406S1406FtCttTt11B.1.258.160.001637
ORF1ab/nsp31406S1406del2TCt--t11B.1.3110.000275
ORF1ab/nsp31406S1406FtCttTt11B.1.3110.000275
ORF1ab/nsp31406S1406FtCttTt11B.1.3290.000608
ORF1ab/nsp31406S1406StcTtcC11B.1.3510.00003
ORF1ab/nsp31406S1406delTCT---11B.1.3510.00003
ORF1ab/nsp31406S1406FtCttTt11B.1.351.20.000303
ORF1ab/nsp31406S1406FtCttTt11B.1.3560.001727
ORF1ab/nsp31406S1406PTctCct11B.1.3560.001727
ORF1ab/nsp31406S1406StcTtcA11B.1.36.170.000494
ORF1ab/nsp31406S1406delTCT---11B.1.36.220.001208
ORF1ab/nsp31406S1406FtCttTt11B.1.36.290.000517
ORF1ab/nsp31406S1406FtCttTt11B.1.36.360.000602
ORF1ab/nsp31406S1406delTCT---11B.1.36.380.001642
ORF1ab/nsp31406S1406StcTtcA11B.1.3610.001289
ORF1ab/nsp31406S1406FtCttTt11B.1.3670.000792
ORF1ab/nsp31406S1406delTCT---11B.1.3890.001002
ORF1ab/nsp31406S1406FtCttTt11B.1.4000.000429
ORF1ab/nsp31406S1406YtCttAt11B.1.4030.003268
ORF1ab/nsp31406S1406FtCttTt11B.1.4040.001302
ORF1ab/nsp31406S1406delTCT---11B.1.4090.000781
ORF1ab/nsp31406S1406delTCT---11B.1.4150.014286
ORF1ab/nsp31406S1406delTCT---11B.1.416.10.001563
ORF1ab/nsp31406S1406PTctCct11B.1.4270.00005
ORF1ab/nsp31406S1406FtCttTt11B.1.438.10.000107
ORF1ab/nsp31406S1406StcTtcA11B.1.438.10.000107
ORF1ab/nsp31406S1406FtCttTt11B.1.4530.003236
ORF1ab/nsp31406S1406FtCttTt11B.1.466.20.000391
ORF1ab/nsp31406S1406FtCttTt11B.1.5210.004975
ORF1ab/nsp31406S1406TTcTAcA11B.1.5240.001406
ORF1ab/nsp31406S1406FtCttTt11B.1.5250.000113
ORF1ab/nsp31406S1406FtCttTt11B.1.5410.004425
ORF1ab/nsp31406S1406FtCttTt11B.1.5490.007194
ORF1ab/nsp31406S1406FtCttTt11B.1.5670.003333
ORF1ab/nsp31406S1406delTCT---11B.1.5750.000303
ORF1ab/nsp31406S1406FtCttTt11B.1.5760.000907
ORF1ab/nsp31406S1406FtCttTt11B.1.5870.001898
ORF1ab/nsp31406S1406YtCttAt11B.1.5960.000087
ORF1ab/nsp31406S1406LtCTtTA11B.1.617.10.000129
ORF1ab/nsp31406S1406ATctGct11B.1.617.20.000004
ORF1ab/nsp31406S1406CtCttGt11B.1.6210.000089
ORF1ab/nsp31406S1406delTCT---11B.1.6210.000089
ORF1ab/nsp31406S1406del1tcTtc-11B.1.621.10.000506
ORF1ab/nsp31406S1406delTCT---11B.1.621.10.000506
ORF1ab/nsp31406S1406FtCttTt11B.1.6250.002353
ORF1ab/nsp31406S1406delTCT---11B.1.6300.005236
ORF1ab/nsp31406S1406YtCttAt11B.1.6360.006711
ORF1ab/nsp31406S1406delTCT---11B.1.6370.000073
ORF1ab/nsp31406S1406CtCttGt11B.1.780.008547
ORF1ab/nsp31406S1406FtCttTt11B.1.910.002075
ORF1ab/nsp31406S1406delTCT---11B.400.000364
ORF1ab/nsp31406S1406FtCttTt11B.6.60.000889
ORF1ab/nsp31406S1406StcTtcC11C.140.004329
ORF1ab/nsp31406S1406FtCttTt11C.260.007353
ORF1ab/nsp31406S1406StcTtcC11C.350.000774
ORF1ab/nsp31406S1406TTcTAcC11C.350.000774
ORF1ab/nsp31406S1406FtCttTt11C.60.037037
ORF1ab/nsp31406S1406StcTtcA11D.20.000075
ORF1ab/nsp31406S1406CtCttGt11P.1.10.000318
ORF1ab/nsp31406S1406delTCT---11P.1.150.000232
ORF1ab/nsp31406S1406StcTtcC11P.20.000187
ORF1ab/nsp31406S1406FtCttTt11P.30.001595
ORF1ab/nsp31406S1406FtCttTt11Q.30.000145
ORF1ab/nsp31406S1406FtCttTt11Q.80.000165
ORF1ab/nsp31406S1406del1tcTtc-11U.30.003861
ORF1ab/nsp31406S1406delTCT---11U.30.003861
ORF1ab/nsp31406S1406FtCttTt11W.40.001351