CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1405 | F1405F | F2223F | syn | ttT | ttC | 489 | 489 | 1 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405del | F2223del | del | TTT | --- | 241 | 241 | 1 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405C | F2223C | nonsyn | tTt | tGt | 85 | 85 | 1 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405L | F2223L | nonsyn | Ttt | Ctt | 52 | 45 | 0.865385 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405L | F2223L | nonsyn | ttT | ttA | 52 | 4 | 0.0769231 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405L | F2223L | nonsyn | ttT | ttG | 52 | 2 | 0.0384615 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405L | F2223L | nonsyn | TtT | CtA | 52 | 1 | 0.0192308 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405S | F2223S | nonsyn | tTt | tCt | 23 | 19 | 0.826087 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405S | F2223S | nonsyn | tTT | tCA | 23 | 4 | 0.173913 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405I | F2223I | nonsyn | Ttt | Att | 12 | 12 | 1 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405del1 | F2223del1 | del | Ttt | -tt | 3 | 3 | 1 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405Y | F2223Y | nonsyn | tTt | tAt | 3 | 2 | 0.666667 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405Y | F2223Y | nonsyn | tTT | tAC | 3 | 1 | 0.333333 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405E | F2223E | nonsyn | TTT | GAA | 2 | 2 | 1 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405H | F2223H | nonsyn | TTT | CAC | 2 | 2 | 1 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405del2 | F2223del2 | del | TTt | --t | 2 | 1 | 0.5 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405del2 | F2223del2 | del | tTT | t-- | 2 | 1 | 0.5 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405X | F2223X | nonsyn | tTT | tAG | 1 | 1 | 1 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405W | F2223W | nonsyn | tTT | tGG | 1 | 1 | 1 | 6932-6934 |
ORF1ab/nsp3 | 1405 | F1405M | F2223M | nonsyn | TtT | AtG | 1 | 1 | 1 | 6932-6934 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 489 | 489 | All | 0.000094 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 341 | 341 | AY.44 | 0.002076 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 241 | 241 | All | 0.000046 |
ORF1ab/nsp3 | 1405 | F1405C | tTt | tGt | 85 | 85 | All | 0.000016 |
ORF1ab/nsp3 | 1405 | F1405C | tTt | tGt | 76 | 76 | B.1.2 | 0.000669 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 70 | 70 | B.1.423 | 0.714286 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 67 | 67 | B.1.1.7 | 0.00006 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 45 | 52 | All | 0.000009 |
ORF1ab/nsp3 | 1405 | F1405L | ttT | ttA | 4 | 52 | All | 0.000001 |
ORF1ab/nsp3 | 1405 | F1405L | ttT | ttG | 2 | 52 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405L | TtT | CtA | 1 | 52 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 19 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 1405 | F1405S | tTT | tCA | 4 | 23 | All | 0.000001 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 12 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 1405 | F1405S | tTT | tCA | 4 | 7 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 3 | 7 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 7 | 7 | P.3 | 0.011164 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1405 | F1405L | ttT | ttG | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 4 | 4 | C.34 | 0.148148 |
ORF1ab/nsp3 | 1405 | F1405del1 | Ttt | -tt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1405 | F1405Y | tTt | tAt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405Y | tTT | tAC | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1405 | F1405L | TtT | CtA | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1405 | F1405C | tTt | tGt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1405 | F1405H | TTT | CAC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1405 | F1405H | TTT | CAC | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405E | TTT | GAA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405del2 | TTt | --t | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405del2 | tTT | t-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 1405 | F1405Y | tTt | tAt | 1 | 2 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 1405 | F1405Y | tTT | tAC | 1 | 2 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 1405 | F1405C | tTt | tGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1405 | F1405E | TTT | GAA | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1405 | F1405L | ttT | ttA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1405 | F1405C | tTt | tGt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1405 | F1405W | tTT | tGG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405X | tTT | tAG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405M | TtT | AtG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1405 | F1405L | ttT | ttG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1405 | F1405L | ttT | ttA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1405 | F1405del2 | TTt | --t | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1405 | F1405C | tTt | tGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1405 | F1405Y | tTt | tAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1405 | F1405C | tTt | tGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1405 | F1405del1 | Ttt | -tt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1405 | F1405M | TtT | AtG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1405 | F1405L | ttT | ttA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 1405 | F1405W | tTT | tGG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1405 | F1405del2 | tTT | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1405 | F1405L | Ttt | Ctt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1405 | F1405del1 | Ttt | -tt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1405 | F1405L | ttT | ttA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.370 | 0.008 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1405 | F1405X | tTT | tAG | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1405 | F1405C | tTt | tGt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1405 | F1405S | tTt | tCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1405 | F1405I | Ttt | Att | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1405 | F1405del1 | Ttt | -tt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1405 | F1405F | ttT | ttC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1405 | F1405del | TTT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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