CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1403

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31403P1403SP2221SnonsynCctTct343034290.9997086926-6928
ORF1ab/nsp31403P1403SP2221SnonsynCcTTcC343010.0002915456926-6928
ORF1ab/nsp31403P1403LP2221LnonsyncCtcTt106410600.9962416926-6928
ORF1ab/nsp31403P1403LP2221LnonsyncCTcTG106420.00187976926-6928
ORF1ab/nsp31403P1403LP2221LnonsynCCTTTA106410.000939856926-6928
ORF1ab/nsp31403P1403LP2221LnonsyncCTcTA106410.000939856926-6928
ORF1ab/nsp31403P1403delP2221deldelCCT---21321316926-6928
ORF1ab/nsp31403P1403PP2221PsynccTccC106910.8584916926-6928
ORF1ab/nsp31403P1403PP2221PsynccTccA106130.1226426926-6928
ORF1ab/nsp31403P1403PP2221PsynccTccG10620.01886796926-6928
ORF1ab/nsp31403P1403HP2221HnonsyncCtcAt848416926-6928
ORF1ab/nsp31403P1403TP2221TnonsynCctAct50480.966926-6928
ORF1ab/nsp31403P1403TP2221TnonsynCcTAcC5020.046926-6928
ORF1ab/nsp31403P1403RP2221RnonsyncCtcGt222216926-6928
ORF1ab/nsp31403P1403del1P2221del1delccTcc-530.66926-6928
ORF1ab/nsp31403P1403del1P2221del1delCct-ct510.26926-6928
ORF1ab/nsp31403P1403del1P2221del1delCCT-NN510.26926-6928
ORF1ab/nsp31403P1403FP2221FnonsynCCtTTt320.6666676926-6928
ORF1ab/nsp31403P1403FP2221FnonsynCCTTTC310.3333336926-6928
ORF1ab/nsp31403P1403AP2221AnonsynCctGct2216926-6928
ORF1ab/nsp31403P1403del2P2221del2delCCT--C210.56926-6928
ORF1ab/nsp31403P1403del2P2221del2delCCt--t210.56926-6928
ORF1ab/nsp31403P1403IP2221InonsynCCtATt1116926-6928
ORF1ab/nsp31403P1403CP2221CnonsynCCtTGt1116926-6928
ORF1ab/nsp31403P1403EP2221EnonsynCCTGAA1116926-6928

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31403P1403SCctTct34293430All0.000656
ORF1ab/nsp31403P1403SCcTTcC13430All0
ORF1ab/nsp31403P1403LcCtcTt10601064All0.000203
ORF1ab/nsp31403P1403LcCTcTG21064All0
ORF1ab/nsp31403P1403LcCTcTA11064All0
ORF1ab/nsp31403P1403LCCTTTA11064All0
ORF1ab/nsp31403P1403SCctTct694694AY.50.014331
ORF1ab/nsp31403P1403SCctTct524524L.10.998095
ORF1ab/nsp31403P1403SCctTct400400B.1.1.70.000358
ORF1ab/nsp31403P1403SCctTct339339B.1.20.002985
ORF1ab/nsp31403P1403LcCtcTt306306B.1.1770.004029
ORF1ab/nsp31403P1403SCctTct252252AY.40.000392
ORF1ab/nsp31403P1403SCctTct214214B.1.617.20.000806
ORF1ab/nsp31403P1403delCCT---213213All0.000041
ORF1ab/nsp31403P1403PccTccC91106All0.000017
ORF1ab/nsp31403P1403PccTccA13106All0.000002
ORF1ab/nsp31403P1403PccTccG2106All0
ORF1ab/nsp31403P1403LcCtcTt8587B.1.1.70.000076
ORF1ab/nsp31403P1403LcCTcTG287B.1.1.70.000002
ORF1ab/nsp31403P1403HcCtcAt8484All0.000016
ORF1ab/nsp31403P1403LcCtcTt8181AY.470.00252
ORF1ab/nsp31403P1403LcCtcTt7777AY.40.00012
ORF1ab/nsp31403P1403SCctTct7171B.10.00065
ORF1ab/nsp31403P1403delCCT---6464B.1.1.70.000057
ORF1ab/nsp31403P1403SCctTct6262AY.1030.000385
ORF1ab/nsp31403P1403SCctTct5858AY.440.000353
ORF1ab/nsp31403P1403LcCtcTt5151AY.1030.000317
ORF1ab/nsp31403P1403TCctAct4850All0.000009
ORF1ab/nsp31403P1403TCcTAcC250All0
ORF1ab/nsp31403P1403HcCtcAt4949AY.46.60.003538
ORF1ab/nsp31403P1403SCctTct4546AY.430.000199
ORF1ab/nsp31403P1403SCcTTcC146AY.430.000004
ORF1ab/nsp31403P1403SCctTct4545B.1.6210.003983
ORF1ab/nsp31403P1403SCctTct4343B.1.10.00078
ORF1ab/nsp31403P1403PccTccC4141AY.420.001649
ORF1ab/nsp31403P1403LcCtcTt3939AY.440.000237
ORF1ab/nsp31403P1403LcCtcTt3839B.1.617.20.000143
ORF1ab/nsp31403P1403LcCTcTA139B.1.617.20.000004
ORF1ab/nsp31403P1403SCctTct3838P.10.000599
ORF1ab/nsp31403P1403SCctTct3535B.1.258.220.093333
ORF1ab/nsp31403P1403LcCtcTt3333AY.1170.002789
ORF1ab/nsp31403P1403SCctTct3333B.1.2340.004354
ORF1ab/nsp31403P1403SCctTct3030B.1.1.5190.001191
ORF1ab/nsp31403P1403SCctTct2828B.1.1.100.031215
ORF1ab/nsp31403P1403RcCtcGt2222All0.000004
ORF1ab/nsp31403P1403SCctTct2020B.1.1770.000263
ORF1ab/nsp31403P1403SCctTct2020C.36.30.011344
ORF1ab/nsp31403P1403SCctTct2020R.10.0018
ORF1ab/nsp31403P1403LcCtcTt1919B.1.20.000167
ORF1ab/nsp31403P1403LcCtcTt1919B.1.4270.000959
ORF1ab/nsp31403P1403LcCtcTt1919B.1.5260.000447
ORF1ab/nsp31403P1403delCCT---1717AY.40.000026
ORF1ab/nsp31403P1403LcCtcTt1717B.1.5030.042289
ORF1ab/nsp31403P1403SCctTct1616AY.1020.000424
ORF1ab/nsp31403P1403SCctTct1616AY.160.006074
ORF1ab/nsp31403P1403SCctTct1616B.1.1.2160.014248
ORF1ab/nsp31403P1403SCctTct1616B.1.177.810.003029
ORF1ab/nsp31403P1403LcCtcTt1616B.1.5670.053333
ORF1ab/nsp31403P1403LcCtcTt1515AY.950.011416
ORF1ab/nsp31403P1403LcCtcTt1415B.10.000128
ORF1ab/nsp31403P1403LCCTTTA115B.10.000009
ORF1ab/nsp31403P1403SCctTct1414AY.30.000139
ORF1ab/nsp31403P1403LcCtcTt1414AY.390.000346
ORF1ab/nsp31403P1403SCctTct1414B.1.1600.000437
ORF1ab/nsp31403P1403delCCT---1414B.1.1770.000184
ORF1ab/nsp31403P1403LcCtcTt1313AY.430.000058
ORF1ab/nsp31403P1403TCctAct1313AY.440.000079
ORF1ab/nsp31403P1403delCCT---1313B.10.000119
ORF1ab/nsp31403P1403SCctTct1212AY.290.000189
ORF1ab/nsp31403P1403SCctTct1212AY.4.20.00026
ORF1ab/nsp31403P1403LcCtcTt1111AY.200.000428
ORF1ab/nsp31403P1403PccTccC711B.1.1.70.000006
ORF1ab/nsp31403P1403PccTccG211B.1.1.70.000002
ORF1ab/nsp31403P1403PccTccA211B.1.1.70.000002
ORF1ab/nsp31403P1403SCctTct1111B.1.3510.000327
ORF1ab/nsp31403P1403SCctTct1111C.360.010018
ORF1ab/nsp31403P1403SCctTct1010AY.230.000697
ORF1ab/nsp31403P1403SCctTct1010AY.250.00006
ORF1ab/nsp31403P1403SCctTct1010B.1.1.3180.003018
ORF1ab/nsp31403P1403RcCtcGt1010B.1.1.70.000009
ORF1ab/nsp31403P1403delCCT---1010B.1.20.000088
ORF1ab/nsp31403P1403SCctTct1010B.1.2430.000696
ORF1ab/nsp31403P1403LcCtcTt1010B.1.6340.034247
ORF1ab/nsp31403P1403LcCtcTt99AY.140.000792
ORF1ab/nsp31403P1403LcCtcTt99AY.250.000054
ORF1ab/nsp31403P1403LcCtcTt99AY.450.001095
ORF1ab/nsp31403P1403delCCT---99B.1.10.000163
ORF1ab/nsp31403P1403LcCtcTt99B.1.1.700.00307
ORF1ab/nsp31403P1403SCctTct99B.1.360.001313
ORF1ab/nsp31403P1403RcCtcGt99B.1.5250.001018
ORF1ab/nsp31403P1403SCctTct88AY.270.000518
ORF1ab/nsp31403P1403SCctTct88AY.330.000534
ORF1ab/nsp31403P1403SCctTct88AY.390.000198
ORF1ab/nsp31403P1403SCctTct88B.1.4290.000188
ORF1ab/nsp31403P1403LcCtcTt77B.1.10.000127
ORF1ab/nsp31403P1403LcCtcTt77B.1.1.5190.000278
ORF1ab/nsp31403P1403TCctAct77B.1.1.70.000006
ORF1ab/nsp31403P1403SCctTct77B.1.258.170.000728
ORF1ab/nsp31403P1403SCctTct77Q.80.001154
ORF1ab/nsp31403P1403delCCT---660.333333
ORF1ab/nsp31403P1403SCctTct66AY.1000.000276
ORF1ab/nsp31403P1403SCctTct66AY.3.10.000512
ORF1ab/nsp31403P1403SCctTct66AY.360.000889
ORF1ab/nsp31403P1403LcCtcTt66B.1.1.1280.042553
ORF1ab/nsp31403P1403SCctTct66B.1.1.250.003411
ORF1ab/nsp31403P1403PccTccC66B.1.2410.00487
ORF1ab/nsp31403P1403del1ccTcc-35All0.000001
ORF1ab/nsp31403P1403del1CCT-NN15All0
ORF1ab/nsp31403P1403del1Cct-ct15All0
ORF1ab/nsp31403P1403LcCtcTt55AY.1020.000133
ORF1ab/nsp31403P1403SCctTct55AY.1180.000313
ORF1ab/nsp31403P1403LcCtcTt55AY.330.000334
ORF1ab/nsp31403P1403PccTccA35AY.40.000005
ORF1ab/nsp31403P1403PccTccC25AY.40.000003
ORF1ab/nsp31403P1403delCCT---55AY.430.000022
ORF1ab/nsp31403P1403SCctTct55AY.470.000156
ORF1ab/nsp31403P1403LcCtcTt55AY.7.10.000564
ORF1ab/nsp31403P1403LcCtcTt55B.1.4290.000118
ORF1ab/nsp31403P1403SCctTct55B.1.5410.022124
ORF1ab/nsp31403P1403SCctTct55B.1.5750.001517
ORF1ab/nsp31403P1403HcCtcAt55B.1.617.20.000019
ORF1ab/nsp31403P1403PccTccC45B.1.617.20.000015
ORF1ab/nsp31403P1403PccTccA15B.1.617.20.000004
ORF1ab/nsp31403P1403LcCtcTt44AY.23.10.001669
ORF1ab/nsp31403P1403LcCtcTt44AY.260.000113
ORF1ab/nsp31403P1403LcCtcTt44AY.350.000932
ORF1ab/nsp31403P1403PccTccC44AY.440.000024
ORF1ab/nsp31403P1403SCctTct44AY.60.000165
ORF1ab/nsp31403P1403SCctTct44AY.75.10.000721
ORF1ab/nsp31403P1403SCctTct44AY.9.20.000147
ORF1ab/nsp31403P1403TCctAct44B.1.10.000073
ORF1ab/nsp31403P1403SCctTct44B.1.1.280.001245
ORF1ab/nsp31403P1403PccTccC44B.1.20.000035
ORF1ab/nsp31403P1403delCCT---44B.1.2210.000284
ORF1ab/nsp31403P1403SCctTct44B.1.351.20.00121
ORF1ab/nsp31403P1403SCctTct44B.1.5240.005626
ORF1ab/nsp31403P1403delCCT---44B.1.617.20.000015
ORF1ab/nsp31403P1403SCctTct33A.23.10.002113
ORF1ab/nsp31403P1403FCCtTTt23All0
ORF1ab/nsp31403P1403FCCTTTC13All0
ORF1ab/nsp31403P1403HcCtcAt33AY.1030.000019
ORF1ab/nsp31403P1403LcCtcTt33AY.1200.000112
ORF1ab/nsp31403P1403SCctTct33AY.130.000483
ORF1ab/nsp31403P1403SCctTct33AY.340.000291
ORF1ab/nsp31403P1403TCctAct33AY.390.000074
ORF1ab/nsp31403P1403SCctTct33AY.4.2.10.000447
ORF1ab/nsp31403P1403delCCT---33AY.4.50.000322
ORF1ab/nsp31403P1403SCctTct33AY.420.000121
ORF1ab/nsp31403P1403HcCtcAt33AY.430.000013
ORF1ab/nsp31403P1403SCctTct33AY.980.000237
ORF1ab/nsp31403P1403TCctAct23B.10.000018
ORF1ab/nsp31403P1403TCcTAcC13B.10.000009
ORF1ab/nsp31403P1403PccTccC23B.1.10.000036
ORF1ab/nsp31403P1403PccTccA13B.1.10.000018
ORF1ab/nsp31403P1403LcCtcTt33B.1.1.2370.016216
ORF1ab/nsp31403P1403SCctTct33B.1.1.3060.001315
ORF1ab/nsp31403P1403SCctTct33B.1.1.3110.001074
ORF1ab/nsp31403P1403SCctTct33B.1.177.120.000455
ORF1ab/nsp31403P1403TCctAct33B.1.2430.000209
ORF1ab/nsp31403P1403LcCtcTt33B.1.2580.0002
ORF1ab/nsp31403P1403LcCtcTt33B.1.36.270.00229
ORF1ab/nsp31403P1403SCctTct33B.1.4270.000151
ORF1ab/nsp31403P1403SCctTct33B.1.5170.001281
ORF1ab/nsp31403P1403SCctTct33B.1.5260.000071
ORF1ab/nsp31403P1403delCCT---33B.1.5960.000261
ORF1ab/nsp31403P1403SCctTct33B.1.5960.000261
ORF1ab/nsp31403P1403LcCtcTt33B.1.5960.000261
ORF1ab/nsp31403P1403LcCtcTt33B.1.6210.000266
ORF1ab/nsp31403P1403SCctTct33C.370.000348
ORF1ab/nsp31403P1403ACctGct22All0
ORF1ab/nsp31403P1403del2CCt--t12All0
ORF1ab/nsp31403P1403del2CCT--C12All0
ORF1ab/nsp31403P1403LcCtcTt22AY.1000.000092
ORF1ab/nsp31403P1403SCctTct22AY.1100.000225
ORF1ab/nsp31403P1403LcCtcTt22AY.1130.000285
ORF1ab/nsp31403P1403SCctTct22AY.1210.000271
ORF1ab/nsp31403P1403LcCtcTt22AY.1210.000271
ORF1ab/nsp31403P1403HcCtcAt22AY.250.000012
ORF1ab/nsp31403P1403SCctTct22AY.260.000057
ORF1ab/nsp31403P1403LcCtcTt22AY.30.00002
ORF1ab/nsp31403P1403LcCtcTt22AY.340.000194
ORF1ab/nsp31403P1403LcCtcTt22AY.360.000296
ORF1ab/nsp31403P1403TCctAct22AY.40.000003
ORF1ab/nsp31403P1403SCctTct22AY.46.60.000144
ORF1ab/nsp31403P1403TCctAct22AY.670.000929
ORF1ab/nsp31403P1403HcCtcAt22AY.690.000373
ORF1ab/nsp31403P1403SCctTct22AY.750.000112
ORF1ab/nsp31403P1403LcCtcTt22AY.790.002421
ORF1ab/nsp31403P1403SCctTct22AY.850.000854
ORF1ab/nsp31403P1403SCctTct22AY.880.001768
ORF1ab/nsp31403P1403SCctTct22AY.920.000575
ORF1ab/nsp31403P1403SCctTct22AY.950.001522
ORF1ab/nsp31403P1403SCctTct22AY.98.10.000097
ORF1ab/nsp31403P1403PccTccC22B.10.000018
ORF1ab/nsp31403P1403SCctTct22B.1.1.1490.032787
ORF1ab/nsp31403P1403SCctTct22B.1.1.1610.007067
ORF1ab/nsp31403P1403SCctTct22B.1.1.2770.001517
ORF1ab/nsp31403P1403SCctTct22B.1.1.3560.017094
ORF1ab/nsp31403P1403LcCtcTt22B.1.1.3710.020833
ORF1ab/nsp31403P1403HcCtcAt22B.1.1.4160.00181
ORF1ab/nsp31403P1403HcCtcAt22B.1.1.70.000002
ORF1ab/nsp31403P1403del1ccTcc-12B.1.1.70.000001
ORF1ab/nsp31403P1403del1Cct-ct12B.1.1.70.000001
ORF1ab/nsp31403P1403PccTccC22B.1.1770.000026
ORF1ab/nsp31403P1403TCcTAcC12B.1.1770.000013
ORF1ab/nsp31403P1403TCctAct12B.1.1770.000013
ORF1ab/nsp31403P1403SCctTct22B.1.177.320.002699
ORF1ab/nsp31403P1403delCCT---22B.1.177.40.000422
ORF1ab/nsp31403P1403LcCtcTt22B.1.177.40.000422
ORF1ab/nsp31403P1403SCctTct22B.1.177.540.001213
ORF1ab/nsp31403P1403SCctTct22B.1.177.860.000367
ORF1ab/nsp31403P1403HcCtcAt22B.1.20.000018
ORF1ab/nsp31403P1403LcCtcTt22B.1.214.20.001199
ORF1ab/nsp31403P1403SCctTct22B.1.2210.000142
ORF1ab/nsp31403P1403delCCT---22B.1.2580.000133
ORF1ab/nsp31403P1403SCctTct22B.1.2580.000133
ORF1ab/nsp31403P1403delCCT---22B.1.3110.000549
ORF1ab/nsp31403P1403delCCT---22B.1.3510.000059
ORF1ab/nsp31403P1403LcCtcTt22B.1.360.000292
ORF1ab/nsp31403P1403TCctAct22B.1.36.100.009569
ORF1ab/nsp31403P1403SCctTct22B.1.36.290.001035
ORF1ab/nsp31403P1403SCctTct22B.1.3620.003082
ORF1ab/nsp31403P1403SCctTct22B.1.3670.001585
ORF1ab/nsp31403P1403LcCtcTt22B.1.438.10.000215
ORF1ab/nsp31403P1403delCCT---22B.1.5170.000854
ORF1ab/nsp31403P1403delCCT---22B.1.5250.000226
ORF1ab/nsp31403P1403HcCtcAt22B.1.5260.000047
ORF1ab/nsp31403P1403LcCtcTt22B.1.5640.000852
ORF1ab/nsp31403P1403SCctTct22B.1.5640.000852
ORF1ab/nsp31403P1403SCctTct22B.1.617.10.000258
ORF1ab/nsp31403P1403SCctTct22C.140.008658
ORF1ab/nsp31403P1403SCctTct22C.160.002121
ORF1ab/nsp31403P1403LcCtcTt22C.160.002121
ORF1ab/nsp31403P1403delCCT---22P.10.000032
ORF1ab/nsp31403P1403SCctTct22P.1.40.001953
ORF1ab/nsp31403P1403LcCtcTt22R.10.00018
ORF1ab/nsp31403P1403TCctAct110.055556
ORF1ab/nsp31403P1403ICCtATt110.055556
ORF1ab/nsp31403P1403LcCtcTt110.055556
ORF1ab/nsp31403P1403SCctTct11A0.000387
ORF1ab/nsp31403P1403delCCT---11A.2.40.003367
ORF1ab/nsp31403P1403LcCtcTt11A.23.10.000704
ORF1ab/nsp31403P1403delCCT---11A.280.002646
ORF1ab/nsp31403P1403SCctTct11AE.80.000489
ORF1ab/nsp31403P1403ICCtATt11All0
ORF1ab/nsp31403P1403ECCTGAA11All0
ORF1ab/nsp31403P1403CCCtTGt11All0
ORF1ab/nsp31403P1403PccTccA11AY.1030.000006
ORF1ab/nsp31403P1403SCctTct11AY.1040.001984
ORF1ab/nsp31403P1403LcCtcTt11AY.1060.000335
ORF1ab/nsp31403P1403LcCtcTt11AY.1090.00074
ORF1ab/nsp31403P1403PccTccC11AY.1130.000142
ORF1ab/nsp31403P1403SCctTct11AY.1150.005208
ORF1ab/nsp31403P1403PccTccC11AY.1160.000287
ORF1ab/nsp31403P1403SCctTct11AY.1170.000085
ORF1ab/nsp31403P1403delCCT---11AY.1200.000037
ORF1ab/nsp31403P1403LcCtcTt11AY.210.001898
ORF1ab/nsp31403P1403PccTccC11AY.230.00007
ORF1ab/nsp31403P1403SCctTct11AY.23.10.000417
ORF1ab/nsp31403P1403SCctTct11AY.240.000431
ORF1ab/nsp31403P1403delCCT---11AY.240.000431
ORF1ab/nsp31403P1403LcCtcTt11AY.290.000016
ORF1ab/nsp31403P1403LcCtcTt11AY.29.10.000221
ORF1ab/nsp31403P1403SCctTct11AY.29.10.000221
ORF1ab/nsp31403P1403del1ccTcc-11AY.330.000067
ORF1ab/nsp31403P1403LcCtcTt11AY.34.10.00051
ORF1ab/nsp31403P1403SCctTct11AY.34.10.00051
ORF1ab/nsp31403P1403delCCT---11AY.360.000148
ORF1ab/nsp31403P1403HcCtcAt11AY.370.000316
ORF1ab/nsp31403P1403LcCtcTt11AY.39.10.00004
ORF1ab/nsp31403P1403SCctTct11AY.39.10.00004
ORF1ab/nsp31403P1403RcCtcGt11AY.40.000002
ORF1ab/nsp31403P1403LcCtcTt11AY.4.20.000022
ORF1ab/nsp31403P1403LcCtcTt11AY.420.00004
ORF1ab/nsp31403P1403PccTccC11AY.430.000004
ORF1ab/nsp31403P1403SCctTct11AY.450.000122
ORF1ab/nsp31403P1403SCctTct11AY.46.20.000635
ORF1ab/nsp31403P1403SCctTct11AY.46.40.000165
ORF1ab/nsp31403P1403PccTccC11AY.470.000031
ORF1ab/nsp31403P1403delCCT---11AY.470.000031
ORF1ab/nsp31403P1403FCCtTTt11AY.470.000031
ORF1ab/nsp31403P1403LcCtcTt11AY.50.000021
ORF1ab/nsp31403P1403delCCT---11AY.50.000021
ORF1ab/nsp31403P1403SCctTct11AY.5.30.000337
ORF1ab/nsp31403P1403SCctTct11AY.5.40.000277
ORF1ab/nsp31403P1403TCctAct11AY.510.000909
ORF1ab/nsp31403P1403SCctTct11AY.510.000909
ORF1ab/nsp31403P1403LcCtcTt11AY.520.000814
ORF1ab/nsp31403P1403delCCT---11AY.540.000095
ORF1ab/nsp31403P1403SCctTct11AY.550.000917
ORF1ab/nsp31403P1403PccTccA11AY.580.000907
ORF1ab/nsp31403P1403SCctTct11AY.580.000907
ORF1ab/nsp31403P1403SCctTct11AY.590.00053
ORF1ab/nsp31403P1403LcCtcTt11AY.60.000041
ORF1ab/nsp31403P1403PccTccC11AY.60.000041
ORF1ab/nsp31403P1403SCctTct11AY.610.000105
ORF1ab/nsp31403P1403delCCT---11AY.610.000105
ORF1ab/nsp31403P1403LcCtcTt11AY.610.000105
ORF1ab/nsp31403P1403SCctTct11AY.620.000436
ORF1ab/nsp31403P1403LcCtcTt11AY.650.000533
ORF1ab/nsp31403P1403SCctTct11AY.670.000464
ORF1ab/nsp31403P1403delCCT---11AY.730.000665
ORF1ab/nsp31403P1403LcCtcTt11AY.770.001127
ORF1ab/nsp31403P1403FCCTTTC11AY.790.001211
ORF1ab/nsp31403P1403SCctTct11AY.840.000437
ORF1ab/nsp31403P1403TCctAct11AY.850.000427
ORF1ab/nsp31403P1403delCCT---11AY.9.20.000037
ORF1ab/nsp31403P1403LcCtcTt11AY.930.000273
ORF1ab/nsp31403P1403SCctTct11AY.960.002075
ORF1ab/nsp31403P1403LcCtcTt11AY.98.10.000048
ORF1ab/nsp31403P1403LcCtcTt11AY.99.20.000092
ORF1ab/nsp31403P1403SCctTct11AY.99.20.000092
ORF1ab/nsp31403P1403HcCtcAt11B.10.000009
ORF1ab/nsp31403P1403FCCtTTt11B.1.10.000018
ORF1ab/nsp31403P1403HcCtcAt11B.1.10.000018
ORF1ab/nsp31403P1403PccTccA11B.1.1.100.001115
ORF1ab/nsp31403P1403LcCtcTt11B.1.1.1440.028571
ORF1ab/nsp31403P1403SCctTct11B.1.1.1630.007634
ORF1ab/nsp31403P1403SCctTct11B.1.1.1760.000439
ORF1ab/nsp31403P1403delCCT---11B.1.1.1920.002309
ORF1ab/nsp31403P1403HcCtcAt11B.1.1.1940.00495
ORF1ab/nsp31403P1403HcCtcAt11B.1.1.2100.005714
ORF1ab/nsp31403P1403delCCT---11B.1.1.2180.007692
ORF1ab/nsp31403P1403SCctTct11B.1.1.2220.000204
ORF1ab/nsp31403P1403delCCT---11B.1.1.2360.006897
ORF1ab/nsp31403P1403SCctTct11B.1.1.2360.006897
ORF1ab/nsp31403P1403SCctTct11B.1.1.2530.002506
ORF1ab/nsp31403P1403LcCtcTt11B.1.1.280.000311
ORF1ab/nsp31403P1403ECCTGAA11B.1.1.3060.000438
ORF1ab/nsp31403P1403delCCT---11B.1.1.3110.000358
ORF1ab/nsp31403P1403delCCT---11B.1.1.3120.001912
ORF1ab/nsp31403P1403SCctTct11B.1.1.3120.001912
ORF1ab/nsp31403P1403delCCT---11B.1.1.3150.008475
ORF1ab/nsp31403P1403PccTccC11B.1.1.3180.000302
ORF1ab/nsp31403P1403LcCtcTt11B.1.1.3690.000446
ORF1ab/nsp31403P1403LcCtcTt11B.1.1.370.000193
ORF1ab/nsp31403P1403PccTccA11B.1.1.3720.000689
ORF1ab/nsp31403P1403delCCT---11B.1.1.4090.002833
ORF1ab/nsp31403P1403SCctTct11B.1.1.4090.002833
ORF1ab/nsp31403P1403SCctTct11B.1.1.4320.001266
ORF1ab/nsp31403P1403LcCtcTt11B.1.1.4340.000349
ORF1ab/nsp31403P1403SCctTct11B.1.1.4480.002033
ORF1ab/nsp31403P1403SCctTct11B.1.1.570.011494
ORF1ab/nsp31403P1403ACctGct11B.1.1.70.000001
ORF1ab/nsp31403P1403del2CCt--t11B.1.1.70.000001
ORF1ab/nsp31403P1403CCCtTGt11B.1.1.70.000001
ORF1ab/nsp31403P1403delCCT---11B.1.1.700.000341
ORF1ab/nsp31403P1403SCctTct11B.1.1.700.000341
ORF1ab/nsp31403P1403PccTccC11B.1.110.30.000718
ORF1ab/nsp31403P1403SCctTct11B.1.110.30.000718
ORF1ab/nsp31403P1403LcCtcTt11B.1.1200.007692
ORF1ab/nsp31403P1403HcCtcAt11B.1.1600.000031
ORF1ab/nsp31403P1403LcCtcTt11B.1.1600.000031
ORF1ab/nsp31403P1403SCctTct11B.1.160.160.000929
ORF1ab/nsp31403P1403HcCtcAt11B.1.160.200.008929
ORF1ab/nsp31403P1403SCctTct11B.1.160.220.006757
ORF1ab/nsp31403P1403delCCT---11B.1.160.70.002079
ORF1ab/nsp31403P1403LcCtcTt11B.1.1700.00431
ORF1ab/nsp31403P1403ACctGct11B.1.1770.000013
ORF1ab/nsp31403P1403delCCT---11B.1.177.150.000631
ORF1ab/nsp31403P1403delCCT---11B.1.177.160.000664
ORF1ab/nsp31403P1403delCCT---11B.1.177.180.00116
ORF1ab/nsp31403P1403delCCT---11B.1.177.190.001431
ORF1ab/nsp31403P1403delCCT---11B.1.177.210.000076
ORF1ab/nsp31403P1403LcCtcTt11B.1.177.270.009434
ORF1ab/nsp31403P1403PccTccC11B.1.177.440.000519
ORF1ab/nsp31403P1403SCctTct11B.1.177.440.000519
ORF1ab/nsp31403P1403LcCtcTt11B.1.177.450.000381
ORF1ab/nsp31403P1403delCCT---11B.1.177.540.000606
ORF1ab/nsp31403P1403PccTccC11B.1.177.540.000606
ORF1ab/nsp31403P1403delCCT---11B.1.177.560.000668
ORF1ab/nsp31403P1403delCCT---11B.1.177.570.000281
ORF1ab/nsp31403P1403LcCtcTt11B.1.177.580.001332
ORF1ab/nsp31403P1403delCCT---11B.1.177.60.000977
ORF1ab/nsp31403P1403SCctTct11B.1.177.600.000218
ORF1ab/nsp31403P1403delCCT---11B.1.177.620.001192
ORF1ab/nsp31403P1403delCCT---11B.1.177.680.015152
ORF1ab/nsp31403P1403SCctTct11B.1.177.70.000165
ORF1ab/nsp31403P1403delCCT---11B.1.177.70.000165
ORF1ab/nsp31403P1403PccTccC11B.1.177.750.001041
ORF1ab/nsp31403P1403SCctTct11B.1.177.770.000726
ORF1ab/nsp31403P1403LcCtcTt11B.1.177.810.000189
ORF1ab/nsp31403P1403SCctTct11B.1.177.820.000477
ORF1ab/nsp31403P1403delCCT---11B.1.177.870.000728
ORF1ab/nsp31403P1403delCCT---11B.1.177.90.001332
ORF1ab/nsp31403P1403TCctAct11B.1.20.000009
ORF1ab/nsp31403P1403SCctTct11B.1.2220.001692
ORF1ab/nsp31403P1403LcCtcTt11B.1.2340.000132
ORF1ab/nsp31403P1403HcCtcAt11B.1.2360.002053
ORF1ab/nsp31403P1403SCctTct11B.1.2410.000812
ORF1ab/nsp31403P1403LcCtcTt11B.1.2430.00007
ORF1ab/nsp31403P1403delCCT---11B.1.258.100.011364
ORF1ab/nsp31403P1403LcCtcTt11B.1.258.170.000104
ORF1ab/nsp31403P1403LcCtcTt11B.1.2790.000514
ORF1ab/nsp31403P1403PccTccC11B.1.3200.001245
ORF1ab/nsp31403P1403LcCtcTt11B.1.3510.00003
ORF1ab/nsp31403P1403HcCtcAt11B.1.3510.00003
ORF1ab/nsp31403P1403SCctTct11B.1.351.50.0006
ORF1ab/nsp31403P1403SCctTct11B.1.36.180.00042
ORF1ab/nsp31403P1403delCCT---11B.1.36.220.001208
ORF1ab/nsp31403P1403LcCtcTt11B.1.3690.000285
ORF1ab/nsp31403P1403delCCT---11B.1.3890.001002
ORF1ab/nsp31403P1403delCCT---11B.1.4090.000781
ORF1ab/nsp31403P1403delCCT---11B.1.416.10.001563
ORF1ab/nsp31403P1403LcCtcTt11B.1.4250.002994
ORF1ab/nsp31403P1403LcCtcTt11B.1.4360.001029
ORF1ab/nsp31403P1403SCctTct11B.1.4410.009615
ORF1ab/nsp31403P1403SCctTct11B.1.466.20.000391
ORF1ab/nsp31403P1403HcCtcAt11B.1.5170.000427
ORF1ab/nsp31403P1403PccTccA11B.1.5240.001406
ORF1ab/nsp31403P1403PccTccC11B.1.5250.000113
ORF1ab/nsp31403P1403SCctTct11B.1.5250.000113
ORF1ab/nsp31403P1403SCctTct11B.1.5380.008065
ORF1ab/nsp31403P1403delCCT---11B.1.5750.000303
ORF1ab/nsp31403P1403SCctTct11B.1.5770.000687
ORF1ab/nsp31403P1403HcCtcAt11B.1.5820.000491
ORF1ab/nsp31403P1403PccTccC11B.1.5960.000087
ORF1ab/nsp31403P1403TCctAct11B.1.5960.000087
ORF1ab/nsp31403P1403SCctTct11B.1.6090.000479
ORF1ab/nsp31403P1403LcCtcTt11B.1.617.10.000129
ORF1ab/nsp31403P1403PccTccC11B.1.617.10.000129
ORF1ab/nsp31403P1403del1ccTcc-11B.1.617.20.000004
ORF1ab/nsp31403P1403TCctAct11B.1.619.10.000641
ORF1ab/nsp31403P1403delCCT---11B.1.6210.000089
ORF1ab/nsp31403P1403HcCtcAt11B.1.6210.000089
ORF1ab/nsp31403P1403delCCT---11B.1.621.10.000506
ORF1ab/nsp31403P1403PccTccC11B.1.6230.000536
ORF1ab/nsp31403P1403LcCtcTt11B.1.6230.000536
ORF1ab/nsp31403P1403delCCT---11B.1.6300.005236
ORF1ab/nsp31403P1403RcCtcGt11B.1.6360.006711
ORF1ab/nsp31403P1403delCCT---11B.1.6370.000073
ORF1ab/nsp31403P1403LcCtcTt11B.1.88.10.004808
ORF1ab/nsp31403P1403TCctAct11B.1.9.40.006135
ORF1ab/nsp31403P1403delCCT---11B.400.000364
ORF1ab/nsp31403P1403del2CCT--C11C.350.000774
ORF1ab/nsp31403P1403PccTccC11C.36.30.000567
ORF1ab/nsp31403P1403TCctAct11C.370.000116
ORF1ab/nsp31403P1403LcCtcTt11C.80.004464
ORF1ab/nsp31403P1403LcCtcTt11D.20.000075
ORF1ab/nsp31403P1403TCctAct11D.20.000075
ORF1ab/nsp31403P1403SCctTct11D.20.000075
ORF1ab/nsp31403P1403RcCtcGt11P.10.000016
ORF1ab/nsp31403P1403LcCtcTt11P.10.000016
ORF1ab/nsp31403P1403SCctTct11P.1.10.000318
ORF1ab/nsp31403P1403PccTccA11P.1.10.000318
ORF1ab/nsp31403P1403SCctTct11P.1.140.000048
ORF1ab/nsp31403P1403SCctTct11P.1.150.000232
ORF1ab/nsp31403P1403delCCT---11P.1.150.000232
ORF1ab/nsp31403P1403SCctTct11P.20.000187
ORF1ab/nsp31403P1403del1CCT-NN11P.20.000187
ORF1ab/nsp31403P1403SCctTct11P.60.003145
ORF1ab/nsp31403P1403SCctTct11Q.10.000126
ORF1ab/nsp31403P1403LcCtcTt11Q.40.000455
ORF1ab/nsp31403P1403delCCT---11U.30.003861