CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1403 | P1403S | P2221S | nonsyn | Cct | Tct | 3430 | 3429 | 0.999708 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403S | P2221S | nonsyn | CcT | TcC | 3430 | 1 | 0.000291545 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403L | P2221L | nonsyn | cCt | cTt | 1064 | 1060 | 0.996241 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403L | P2221L | nonsyn | cCT | cTG | 1064 | 2 | 0.0018797 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403L | P2221L | nonsyn | CCT | TTA | 1064 | 1 | 0.00093985 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403L | P2221L | nonsyn | cCT | cTA | 1064 | 1 | 0.00093985 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403del | P2221del | del | CCT | --- | 213 | 213 | 1 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403P | P2221P | syn | ccT | ccC | 106 | 91 | 0.858491 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403P | P2221P | syn | ccT | ccA | 106 | 13 | 0.122642 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403P | P2221P | syn | ccT | ccG | 106 | 2 | 0.0188679 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403H | P2221H | nonsyn | cCt | cAt | 84 | 84 | 1 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403T | P2221T | nonsyn | Cct | Act | 50 | 48 | 0.96 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403T | P2221T | nonsyn | CcT | AcC | 50 | 2 | 0.04 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403R | P2221R | nonsyn | cCt | cGt | 22 | 22 | 1 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403del1 | P2221del1 | del | ccT | cc- | 5 | 3 | 0.6 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403del1 | P2221del1 | del | Cct | -ct | 5 | 1 | 0.2 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403del1 | P2221del1 | del | CCT | -NN | 5 | 1 | 0.2 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403F | P2221F | nonsyn | CCt | TTt | 3 | 2 | 0.666667 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403F | P2221F | nonsyn | CCT | TTC | 3 | 1 | 0.333333 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403A | P2221A | nonsyn | Cct | Gct | 2 | 2 | 1 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403del2 | P2221del2 | del | CCT | --C | 2 | 1 | 0.5 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403del2 | P2221del2 | del | CCt | --t | 2 | 1 | 0.5 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403I | P2221I | nonsyn | CCt | ATt | 1 | 1 | 1 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403C | P2221C | nonsyn | CCt | TGt | 1 | 1 | 1 | 6926-6928 |
ORF1ab/nsp3 | 1403 | P1403E | P2221E | nonsyn | CCT | GAA | 1 | 1 | 1 | 6926-6928 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3429 | 3430 | All | 0.000656 |
ORF1ab/nsp3 | 1403 | P1403S | CcT | TcC | 1 | 3430 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1060 | 1064 | All | 0.000203 |
ORF1ab/nsp3 | 1403 | P1403L | cCT | cTG | 2 | 1064 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403L | cCT | cTA | 1 | 1064 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403L | CCT | TTA | 1 | 1064 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 694 | 694 | AY.5 | 0.014331 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 524 | 524 | L.1 | 0.998095 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 400 | 400 | B.1.1.7 | 0.000358 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 339 | 339 | B.1.2 | 0.002985 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 306 | 306 | B.1.177 | 0.004029 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 252 | 252 | AY.4 | 0.000392 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 214 | 214 | B.1.617.2 | 0.000806 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 213 | 213 | All | 0.000041 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 91 | 106 | All | 0.000017 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 13 | 106 | All | 0.000002 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccG | 2 | 106 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 85 | 87 | B.1.1.7 | 0.000076 |
ORF1ab/nsp3 | 1403 | P1403L | cCT | cTG | 2 | 87 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 84 | 84 | All | 0.000016 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 81 | 81 | AY.47 | 0.00252 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 77 | 77 | AY.4 | 0.00012 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 71 | 71 | B.1 | 0.00065 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 64 | 64 | B.1.1.7 | 0.000057 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 62 | 62 | AY.103 | 0.000385 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 58 | 58 | AY.44 | 0.000353 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 51 | 51 | AY.103 | 0.000317 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 48 | 50 | All | 0.000009 |
ORF1ab/nsp3 | 1403 | P1403T | CcT | AcC | 2 | 50 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 49 | 49 | AY.46.6 | 0.003538 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 45 | 46 | AY.43 | 0.000199 |
ORF1ab/nsp3 | 1403 | P1403S | CcT | TcC | 1 | 46 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 45 | 45 | B.1.621 | 0.003983 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 43 | 43 | B.1.1 | 0.00078 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 41 | 41 | AY.42 | 0.001649 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 39 | 39 | AY.44 | 0.000237 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 38 | 39 | B.1.617.2 | 0.000143 |
ORF1ab/nsp3 | 1403 | P1403L | cCT | cTA | 1 | 39 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 38 | 38 | P.1 | 0.000599 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 35 | 35 | B.1.258.22 | 0.093333 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 33 | 33 | AY.117 | 0.002789 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 33 | 33 | B.1.234 | 0.004354 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 30 | 30 | B.1.1.519 | 0.001191 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 28 | 28 | B.1.1.10 | 0.031215 |
ORF1ab/nsp3 | 1403 | P1403R | cCt | cGt | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 20 | 20 | B.1.177 | 0.000263 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 20 | 20 | C.36.3 | 0.011344 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 20 | 20 | R.1 | 0.0018 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 19 | 19 | B.1.427 | 0.000959 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 19 | 19 | B.1.526 | 0.000447 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 17 | 17 | B.1.503 | 0.042289 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 16 | 16 | AY.16 | 0.006074 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 16 | 16 | B.1.1.216 | 0.014248 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 16 | 16 | B.1.177.81 | 0.003029 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 16 | 16 | B.1.567 | 0.053333 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 15 | 15 | AY.95 | 0.011416 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 14 | 15 | B.1 | 0.000128 |
ORF1ab/nsp3 | 1403 | P1403L | CCT | TTA | 1 | 15 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 7 | 11 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccG | 2 | 11 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 2 | 11 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 11 | 11 | C.36 | 0.010018 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 10 | 10 | B.1.1.318 | 0.003018 |
ORF1ab/nsp3 | 1403 | P1403R | cCt | cGt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 10 | 10 | B.1.634 | 0.034247 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 9 | 9 | B.1.1.70 | 0.00307 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp3 | 1403 | P1403R | cCt | cGt | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 6 | 6 | B.1.1.128 | 0.042553 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 6 | 6 | B.1.1.25 | 0.003411 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 6 | 6 | B.1.241 | 0.00487 |
ORF1ab/nsp3 | 1403 | P1403del1 | ccT | cc- | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1403 | P1403del1 | CCT | -NN | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403del1 | Cct | -ct | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 3 | 5 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 2 | 5 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 5 | 5 | B.1.541 | 0.022124 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 4 | 4 | AY.23.1 | 0.001669 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 4 | 4 | B.1.524 | 0.005626 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp3 | 1403 | P1403F | CCt | TTt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403F | CCT | TTC | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1403 | P1403T | CcT | AcC | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 3 | 3 | B.1.1.237 | 0.016216 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 3 | 3 | B.1.36.27 | 0.00229 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1403 | P1403A | Cct | Gct | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403del2 | CCt | --t | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403del2 | CCT | --C | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.1.149 | 0.032787 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.1.356 | 0.017094 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | B.1.1.371 | 0.020833 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1403 | P1403del1 | ccT | cc- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1403 | P1403del1 | Cct | -ct | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1403 | P1403T | CcT | AcC | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1403 | P1403I | CCt | ATt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1403 | P1403I | CCt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403E | CCT | GAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403C | CCt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1403 | P1403del1 | ccT | cc- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1403 | P1403R | cCt | cGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1403 | P1403F | CCt | TTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1403 | P1403F | CCT | TTC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1403 | P1403F | CCt | TTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.1.144 | 0.028571 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1403 | P1403E | CCT | GAA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp3 | 1403 | P1403A | Cct | Gct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1403 | P1403del2 | CCt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1403 | P1403C | CCt | TGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1403 | P1403A | Cct | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.177.27 | 0.009434 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1403 | P1403del1 | ccT | cc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1403 | P1403H | cCt | cAt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1403 | P1403R | cCt | cGt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1403 | P1403del2 | CCT | --C | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccC | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1403 | P1403T | Cct | Act | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1403 | P1403R | cCt | cGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1403 | P1403P | ccT | ccA | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1403 | P1403del1 | CCT | -NN | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 1403 | P1403S | Cct | Tct | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1403 | P1403L | cCt | cTt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1403 | P1403del | CCT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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