CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1388 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31388V1388VV2206VsyngtCgtT550054410.9892736881-6883

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31388V1388VgtCgtT54415500All0.001041
ORF1ab/nsp31388V1388VgtCgtT17751776AY.390.043863
ORF1ab/nsp31388V1388VgtCgtT718718B.1.1.2940.908861
ORF1ab/nsp31388V1388VgtCgtT643643AY.39.20.990755
ORF1ab/nsp31388V1388VgtCgtT481481B.1.1.70.000431
ORF1ab/nsp31388V1388VgtCgtT246247AY.1030.001527
ORF1ab/nsp31388V1388VgtCgtT168168AY.46.60.012131
ORF1ab/nsp31388V1388VgtCgtT148154B.1.20.001303
ORF1ab/nsp31388V1388VgtCgtT149150B.1.617.20.000561
ORF1ab/nsp31388V1388VgtCgtT122122B.1.5260.002868
ORF1ab/nsp31388V1388VgtCgtT9193AY.40.000142
ORF1ab/nsp31388V1388VgtCgtT6263AY.430.000275
ORF1ab/nsp31388V1388VgtCgtT5354B.1.10.000961
ORF1ab/nsp31388V1388VgtCgtT5252B.1.3630.675325
ORF1ab/nsp31388V1388VgtCgtT4242AY.250.000253
ORF1ab/nsp31388V1388VgtCgtT4242M.10.976744
ORF1ab/nsp31388V1388VgtCgtT3436B.10.000311
ORF1ab/nsp31388V1388VgtCgtT3535P.10.000551
ORF1ab/nsp31388V1388VgtCgtT2831AY.30.000278
ORF1ab/nsp31388V1388VgtCgtT3031AY.440.000183
ORF1ab/nsp31388V1388VgtCgtT2828AY.39.10.001109
ORF1ab/nsp31388V1388VgtCgtT2024AY.1210.002706
ORF1ab/nsp31388V1388VgtCgtT1324AY.9.20.000477
ORF1ab/nsp31388V1388VgtCgtT2323AY.200.000894
ORF1ab/nsp31388V1388VgtCgtT1818Q.20.011043
ORF1ab/nsp31388V1388VgtCgtT1516AY.1020.000398
ORF1ab/nsp31388V1388VgtCgtT1616B.1.6350.280702
ORF1ab/nsp31388V1388VgtCgtT1415AY.260.000396
ORF1ab/nsp31388V1388VgtCgtT1213B.1.3510.000357
ORF1ab/nsp31388V1388VgtCgtT1313M.31
ORF1ab/nsp31388V1388VgtCgtT412B.1.4290.000094
ORF1ab/nsp31388V1388VgtCgtT1111AY.1000.000506
ORF1ab/nsp31388V1388VgtCgtT1011B.1.1770.000132
ORF1ab/nsp31388V1388VgtCgtT89AY.3.10.000682
ORF1ab/nsp31388V1388VgtCgtT99B.1.177.510.041096
ORF1ab/nsp31388V1388VgtCgtT99M.20.75
ORF1ab/nsp31388V1388VgtCgtT88AY.1190.000282
ORF1ab/nsp31388V1388VgtCgtT88AY.610.000838
ORF1ab/nsp31388V1388VgtCgtT88B.1.1260.010204
ORF1ab/nsp31388V1388VgtCgtT88P.1.100.002156
ORF1ab/nsp31388V1388VgtCgtT77AY.4.20.000152
ORF1ab/nsp31388V1388VgtCgtT67B.1.1.5190.000238
ORF1ab/nsp31388V1388VgtCgtT66B.1.1.280.001867
ORF1ab/nsp31388V1388VgtCgtT66B.1.1.3050.023166
ORF1ab/nsp31388V1388VgtCgtT66B.1.177.110.010187
ORF1ab/nsp31388V1388VgtCgtT66B.1.2340.000792
ORF1ab/nsp31388V1388VgtCgtT66C.370.000696
ORF1ab/nsp31388V1388VgtCgtT55AY.1170.000423
ORF1ab/nsp31388V1388VgtCgtT55AY.230.000349
ORF1ab/nsp31388V1388VgtCgtT55AY.330.000334
ORF1ab/nsp31388V1388VgtCgtT55AY.460.00052
ORF1ab/nsp31388V1388VgtCgtT55AY.980.000395
ORF1ab/nsp31388V1388VgtCgtT55B.1.1.3060.002192
ORF1ab/nsp31388V1388VgtCgtT44AY.360.000593
ORF1ab/nsp31388V1388VgtCgtT44AY.420.000161
ORF1ab/nsp31388V1388VgtCgtT34AY.9.10.000251
ORF1ab/nsp31388V1388VgtCgtT44B.1.1.2320.00726
ORF1ab/nsp31388V1388VgtCgtT44B.1.177.810.000757
ORF1ab/nsp31388V1388VgtCgtT44B.1.5870.00759
ORF1ab/nsp31388V1388VgtCgtT44B.1.6370.000292
ORF1ab/nsp31388V1388VgtCgtT33AY.1100.000338
ORF1ab/nsp31388V1388VgtCgtT33AY.1180.000188
ORF1ab/nsp31388V1388VgtCgtT33AY.1200.000112
ORF1ab/nsp31388V1388VgtCgtT33AY.160.001139
ORF1ab/nsp31388V1388VgtCgtT33AY.270.000194
ORF1ab/nsp31388V1388VgtCgtT33AY.290.000047
ORF1ab/nsp31388V1388VgtCgtT33AY.4.2.10.000447
ORF1ab/nsp31388V1388VgtCgtT33AY.470.000093
ORF1ab/nsp31388V1388VgtCgtT33AY.50.000062
ORF1ab/nsp31388V1388VgtCgtT33AY.650.001599
ORF1ab/nsp31388V1388VgtCgtT33AY.75.10.000541
ORF1ab/nsp31388V1388VgtCgtT33AY.910.002191
ORF1ab/nsp31388V1388VgtCgtT23AY.99.20.000184
ORF1ab/nsp31388V1388VgtCgtT33B.1.1.1610.010601
ORF1ab/nsp31388V1388VgtCgtT23B.1.1.2140.000111
ORF1ab/nsp31388V1388VgtCgtT33B.1.1.2770.002276
ORF1ab/nsp31388V1388VgtCgtT33B.1.1.4160.002715
ORF1ab/nsp31388V1388VgtCgtT33B.1.2200.032609
ORF1ab/nsp31388V1388VgtCgtT33B.1.2580.0002
ORF1ab/nsp31388V1388VgtCgtT33B.1.36.220.003623
ORF1ab/nsp31388V1388VgtCgtT13P.1.170.000162
ORF1ab/nsp31388V1388VgtCgtT33P.20.00056
ORF1ab/nsp31388V1388VgtCgtT12A0.000387
ORF1ab/nsp31388V1388VgtCgtT22AY.1110.000366
ORF1ab/nsp31388V1388VgtCgtT22AY.1130.000285
ORF1ab/nsp31388V1388VgtCgtT22AY.4.50.000215
ORF1ab/nsp31388V1388VgtCgtT22AY.5.40.000553
ORF1ab/nsp31388V1388VgtCgtT22AY.590.001059
ORF1ab/nsp31388V1388VgtCgtT22AY.60.000082
ORF1ab/nsp31388V1388VgtCgtT22AY.740.000231
ORF1ab/nsp31388V1388VgtCgtT22AY.840.000875
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.100.00223
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.1760.000879
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.2890.004167
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.3330.002153
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.4340.000697
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.4640.002946
ORF1ab/nsp31388V1388VgtCgtT22B.1.36.180.00084
ORF1ab/nsp31388V1388VgtCgtT22B.1.4270.000101
ORF1ab/nsp31388V1388VgtCgtT22B.1.4450.023529
ORF1ab/nsp31388V1388VgtCgtT22B.1.4970.00063
ORF1ab/nsp31388V1388VgtCgtT22B.1.5960.000174
ORF1ab/nsp31388V1388VgtCgtT22C.360.001821
ORF1ab/nsp31388V1388VgtCgtT22Q.80.00033
ORF1ab/nsp31388V1388VgtCgtT110.055556
ORF1ab/nsp31388V1388VgtCgtT11A.180.05
ORF1ab/nsp31388V1388VgtCgtT11A.2.50.000499
ORF1ab/nsp31388V1388VgtCgtT11AY.10.000396
ORF1ab/nsp31388V1388VgtCgtT11AY.1050.000643
ORF1ab/nsp31388V1388VgtCgtT11AY.1080.001103
ORF1ab/nsp31388V1388VgtCgtT11AY.110.001339
ORF1ab/nsp31388V1388VgtCgtT11AY.16.10.00047
ORF1ab/nsp31388V1388VgtCgtT11AY.20.000356
ORF1ab/nsp31388V1388VgtCgtT11AY.240.000431
ORF1ab/nsp31388V1388VgtCgtT11AY.320.000532
ORF1ab/nsp31388V1388VgtCgtT11AY.480.000465
ORF1ab/nsp31388V1388VgtCgtT11AY.550.000917
ORF1ab/nsp31388V1388VgtCgtT11AY.600.000938
ORF1ab/nsp31388V1388VgtCgtT11AY.7.10.000113
ORF1ab/nsp31388V1388VgtCgtT11AY.750.000056
ORF1ab/nsp31388V1388VgtCgtT11AY.810.001992
ORF1ab/nsp31388V1388VgtCgtT11AY.880.000884
ORF1ab/nsp31388V1388VgtCgtT11AY.920.000287
ORF1ab/nsp31388V1388VgtCgtT11AY.990.001049
ORF1ab/nsp31388V1388VgtCgtT11AZ.10.000867
ORF1ab/nsp31388V1388VgtCgtT11B0.000128
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.2840.000107
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.3070.002532
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.330.000421
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.3360.016667
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.3760.005952
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.4860.001577
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.630.000386
ORF1ab/nsp31388V1388VgtCgtT11B.1.1040.00369
ORF1ab/nsp31388V1388VgtCgtT11B.1.1150.021739
ORF1ab/nsp31388V1388VgtCgtT11B.1.1490.003425
ORF1ab/nsp31388V1388VgtCgtT11B.1.1600.000031
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.210.000076
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.350.000691
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.570.000281
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.650.000665
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.70.000165
ORF1ab/nsp31388V1388VgtCgtT11B.1.2210.000071
ORF1ab/nsp31388V1388VgtCgtT11B.1.221.10.002907
ORF1ab/nsp31388V1388VgtCgtT11B.1.2430.00007
ORF1ab/nsp31388V1388VgtCgtT11B.1.258.170.000104
ORF1ab/nsp31388V1388VgtCgtT11B.1.36.280.005747
ORF1ab/nsp31388V1388VgtCgtT11B.1.4040.001302
ORF1ab/nsp31388V1388VgtCgtT11B.1.4260.001009
ORF1ab/nsp31388V1388VgtCgtT11B.1.438.10.000107
ORF1ab/nsp31388V1388VgtCgtT11B.1.4480.002625
ORF1ab/nsp31388V1388VgtCgtT11B.1.4620.007246
ORF1ab/nsp31388V1388VgtCgtT11B.1.4680.005714
ORF1ab/nsp31388V1388VgtCgtT11B.1.4990.00105
ORF1ab/nsp31388V1388VgtCgtT11B.1.5250.000113
ORF1ab/nsp31388V1388VgtCgtT11B.1.5430.01
ORF1ab/nsp31388V1388VgtCgtT11B.1.5480.035714
ORF1ab/nsp31388V1388VgtCgtT11B.1.5510.00129
ORF1ab/nsp31388V1388VgtCgtT11B.1.5750.000303
ORF1ab/nsp31388V1388VgtCgtT11B.1.617.10.000129
ORF1ab/nsp31388V1388VgtCgtT11B.1.6210.000089
ORF1ab/nsp31388V1388VgtCgtT11B.1.621.10.000506
ORF1ab/nsp31388V1388VgtCgtT11D.20.000075
ORF1ab/nsp31388V1388VgtCgtT11N.50.001767
ORF1ab/nsp31388V1388VgtCgtT11P.1.150.000232
ORF1ab/nsp31388V1388VgtCgtT11Q.10.000126