CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1388

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31388V1388VV2206VsyngtCgtT550054410.9892736881-6883
ORF1ab/nsp31388V1388VV2206VsyngtCgtA5500560.01018186881-6883
ORF1ab/nsp31388V1388VV2206VsyngtCgtG550030.0005454556881-6883
ORF1ab/nsp31388V1388IV2206InonsynGtcAtc9569530.9968626881-6883
ORF1ab/nsp31388V1388IV2206InonsynGtCAtT95630.003138086881-6883
ORF1ab/nsp31388V1388delV2206deldelGTC---24224216881-6883
ORF1ab/nsp31388V1388AV2206AnonsyngTcgCc91870.9560446881-6883
ORF1ab/nsp31388V1388AV2206AnonsyngTCgCT9140.0439566881-6883
ORF1ab/nsp31388V1388FV2206FnonsynGtcTtc34310.9117656881-6883
ORF1ab/nsp31388V1388FV2206FnonsynGtCTtT3430.08823536881-6883
ORF1ab/nsp31388V1388GV2206GnonsyngTcgGc21200.9523816881-6883
ORF1ab/nsp31388V1388GV2206GnonsyngTCgGA2110.0476196881-6883
ORF1ab/nsp31388V1388DV2206DnonsyngTcgAc16150.93756881-6883
ORF1ab/nsp31388V1388DV2206DnonsyngTCgAT1610.06256881-6883
ORF1ab/nsp31388V1388del1V2206del1delGtc-tc940.4444446881-6883
ORF1ab/nsp31388V1388del1V2206del1delgtCgt-930.3333336881-6883
ORF1ab/nsp31388V1388del1V2206del1delGTC-GT920.2222226881-6883
ORF1ab/nsp31388V1388LV2206LnonsynGtCTtA730.4285716881-6883
ORF1ab/nsp31388V1388LV2206LnonsynGtcCtc720.2857146881-6883
ORF1ab/nsp31388V1388LV2206LnonsynGtCCtA710.1428576881-6883
ORF1ab/nsp31388V1388LV2206LnonsynGtCCtT710.1428576881-6883
ORF1ab/nsp31388V1388del2V2206del2delGTc--c630.56881-6883
ORF1ab/nsp31388V1388del2V2206del2delgTCg--630.56881-6883
ORF1ab/nsp31388V1388SV2206SnonsynGTCAGT410.256881-6883
ORF1ab/nsp31388V1388SV2206SnonsynGTcTCc410.256881-6883
ORF1ab/nsp31388V1388SV2206SnonsynGTCTCT410.256881-6883
ORF1ab/nsp31388V1388SV2206SnonsynGTcAGc410.256881-6883
ORF1ab/nsp31388V1388TV2206TnonsynGTcACc2216881-6883
ORF1ab/nsp31388V1388YV2206YnonsynGTcTAc1116881-6883
ORF1ab/nsp31388V1388WV2206WnonsynGTCTGG1116881-6883
ORF1ab/nsp31388V1388CV2206CnonsynGTCTGT1116881-6883

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31388V1388VgtCgtT54415500All0.001041
ORF1ab/nsp31388V1388VgtCgtA565500All0.000011
ORF1ab/nsp31388V1388VgtCgtG35500All0.000001
ORF1ab/nsp31388V1388VgtCgtT17751776AY.390.043863
ORF1ab/nsp31388V1388VgtCgtA11776AY.390.000025
ORF1ab/nsp31388V1388IGtcAtc953956All0.000182
ORF1ab/nsp31388V1388IGtCAtT3956All0.000001
ORF1ab/nsp31388V1388IGtcAtc817818B.1.1.70.000731
ORF1ab/nsp31388V1388IGtCAtT1818B.1.1.70.000001
ORF1ab/nsp31388V1388VgtCgtT718718B.1.1.2940.908861
ORF1ab/nsp31388V1388VgtCgtT643643AY.39.20.990755
ORF1ab/nsp31388V1388VgtCgtT481481B.1.1.70.000431
ORF1ab/nsp31388V1388VgtCgtT246247AY.1030.001527
ORF1ab/nsp31388V1388VgtCgtA1247AY.1030.000006
ORF1ab/nsp31388V1388delGTC---242242All0.000046
ORF1ab/nsp31388V1388VgtCgtT168168AY.46.60.012131
ORF1ab/nsp31388V1388VgtCgtT148154B.1.20.001303
ORF1ab/nsp31388V1388VgtCgtA6154B.1.20.000053
ORF1ab/nsp31388V1388VgtCgtT149150B.1.617.20.000561
ORF1ab/nsp31388V1388VgtCgtA1150B.1.617.20.000004
ORF1ab/nsp31388V1388VgtCgtT122122B.1.5260.002868
ORF1ab/nsp31388V1388VgtCgtT9193AY.40.000142
ORF1ab/nsp31388V1388VgtCgtA293AY.40.000003
ORF1ab/nsp31388V1388AgTcgCc8791All0.000017
ORF1ab/nsp31388V1388AgTCgCT491All0.000001
ORF1ab/nsp31388V1388delGTC---7676B.1.1.70.000068
ORF1ab/nsp31388V1388VgtCgtT6263AY.430.000275
ORF1ab/nsp31388V1388VgtCgtA163AY.430.000004
ORF1ab/nsp31388V1388VgtCgtT5354B.1.10.000961
ORF1ab/nsp31388V1388VgtCgtA154B.1.10.000018
ORF1ab/nsp31388V1388VgtCgtT5252B.1.3630.675325
ORF1ab/nsp31388V1388VgtCgtT4242AY.250.000253
ORF1ab/nsp31388V1388VgtCgtT4242M.10.976744
ORF1ab/nsp31388V1388VgtCgtT3436B.10.000311
ORF1ab/nsp31388V1388VgtCgtA236B.10.000018
ORF1ab/nsp31388V1388VgtCgtT3535P.10.000551
ORF1ab/nsp31388V1388IGtcAtc3535Q.10.004421
ORF1ab/nsp31388V1388FGtcTtc3134All0.000006
ORF1ab/nsp31388V1388FGtCTtT334All0.000001
ORF1ab/nsp31388V1388VgtCgtT2831AY.30.000278
ORF1ab/nsp31388V1388VgtCgtG231AY.30.00002
ORF1ab/nsp31388V1388VgtCgtA131AY.30.00001
ORF1ab/nsp31388V1388VgtCgtT3031AY.440.000183
ORF1ab/nsp31388V1388VgtCgtA131AY.440.000006
ORF1ab/nsp31388V1388VgtCgtT2828AY.39.10.001109
ORF1ab/nsp31388V1388VgtCgtT2024AY.1210.002706
ORF1ab/nsp31388V1388VgtCgtA424AY.1210.000541
ORF1ab/nsp31388V1388VgtCgtT1324AY.9.20.000477
ORF1ab/nsp31388V1388VgtCgtA1124AY.9.20.000404
ORF1ab/nsp31388V1388VgtCgtT2323AY.200.000894
ORF1ab/nsp31388V1388GgTcgGc2021All0.000004
ORF1ab/nsp31388V1388GgTCgGA121All0
ORF1ab/nsp31388V1388IGtcAtc2021B.1.617.20.000075
ORF1ab/nsp31388V1388IGtCAtT121B.1.617.20.000004
ORF1ab/nsp31388V1388IGtcAtc1818AY.250.000108
ORF1ab/nsp31388V1388VgtCgtT1818Q.20.011043
ORF1ab/nsp31388V1388DgTcgAc1516All0.000003
ORF1ab/nsp31388V1388DgTCgAT116All0
ORF1ab/nsp31388V1388VgtCgtT1516AY.1020.000398
ORF1ab/nsp31388V1388VgtCgtA116AY.1020.000027
ORF1ab/nsp31388V1388VgtCgtT1616B.1.6350.280702
ORF1ab/nsp31388V1388VgtCgtT1415AY.260.000396
ORF1ab/nsp31388V1388VgtCgtA115AY.260.000028
ORF1ab/nsp31388V1388delGTC---1515AY.40.000023
ORF1ab/nsp31388V1388delGTC---1515B.10.000137
ORF1ab/nsp31388V1388delGTC---1515B.1.1770.000198
ORF1ab/nsp31388V1388VgtCgtT1213B.1.3510.000357
ORF1ab/nsp31388V1388VgtCgtA113B.1.3510.00003
ORF1ab/nsp31388V1388VgtCgtT1313M.31
ORF1ab/nsp31388V1388delGTC---1212B.1.20.000106
ORF1ab/nsp31388V1388VgtCgtA812B.1.4290.000188
ORF1ab/nsp31388V1388VgtCgtT412B.1.4290.000094
ORF1ab/nsp31388V1388AgTcgCc1212B.1.6370.000877
ORF1ab/nsp31388V1388VgtCgtT1111AY.1000.000506
ORF1ab/nsp31388V1388VgtCgtT1011B.1.1770.000132
ORF1ab/nsp31388V1388VgtCgtA111B.1.1770.000013
ORF1ab/nsp31388V1388AgTcgCc1010B.1.177.90.013316
ORF1ab/nsp31388V1388del1Gtc-tc49All0.000001
ORF1ab/nsp31388V1388del1gtCgt-39All0.000001
ORF1ab/nsp31388V1388del1GTC-GT29All0
ORF1ab/nsp31388V1388VgtCgtT89AY.3.10.000682
ORF1ab/nsp31388V1388VgtCgtA19AY.3.10.000085
ORF1ab/nsp31388V1388GgTcgGc99AY.39.10.000357
ORF1ab/nsp31388V1388AgTcgCc99B.10.000082
ORF1ab/nsp31388V1388AgTcgCc79B.1.1.70.000006
ORF1ab/nsp31388V1388AgTCgCT29B.1.1.70.000002
ORF1ab/nsp31388V1388VgtCgtT99B.1.177.510.041096
ORF1ab/nsp31388V1388VgtCgtT99M.20.75
ORF1ab/nsp31388V1388VgtCgtT88AY.1190.000282
ORF1ab/nsp31388V1388VgtCgtT88AY.610.000838
ORF1ab/nsp31388V1388IGtcAtc88B.10.000073
ORF1ab/nsp31388V1388delGTC---88B.1.10.000145
ORF1ab/nsp31388V1388VgtCgtT88B.1.1260.010204
ORF1ab/nsp31388V1388VgtCgtT88P.1.100.002156
ORF1ab/nsp31388V1388LGtCTtA37All0.000001
ORF1ab/nsp31388V1388LGtcCtc27All0
ORF1ab/nsp31388V1388LGtCCtA17All0
ORF1ab/nsp31388V1388LGtCCtT17All0
ORF1ab/nsp31388V1388IGtcAtc77AY.200.000272
ORF1ab/nsp31388V1388VgtCgtT77AY.4.20.000152
ORF1ab/nsp31388V1388VgtCgtT67B.1.1.5190.000238
ORF1ab/nsp31388V1388VgtCgtA17B.1.1.5190.00004
ORF1ab/nsp31388V1388AgTcgCc77P.1.70.002235
ORF1ab/nsp31388V1388del2GTc--c36All0.000001
ORF1ab/nsp31388V1388del2gTCg--36All0.000001
ORF1ab/nsp31388V1388VgtCgtT66B.1.1.280.001867
ORF1ab/nsp31388V1388VgtCgtT66B.1.1.3050.023166
ORF1ab/nsp31388V1388VgtCgtT66B.1.177.110.010187
ORF1ab/nsp31388V1388IGtcAtc66B.1.20.000053
ORF1ab/nsp31388V1388VgtCgtT66B.1.2340.000792
ORF1ab/nsp31388V1388VgtCgtT66C.370.000696
ORF1ab/nsp31388V1388VgtCgtT55AY.1170.000423
ORF1ab/nsp31388V1388VgtCgtT55AY.230.000349
ORF1ab/nsp31388V1388VgtCgtT55AY.330.000334
ORF1ab/nsp31388V1388IGtcAtc55AY.40.000008
ORF1ab/nsp31388V1388delGTC---55AY.4.50.000537
ORF1ab/nsp31388V1388delGTC---55AY.430.000022
ORF1ab/nsp31388V1388VgtCgtT55AY.460.00052
ORF1ab/nsp31388V1388VgtCgtT55AY.980.000395
ORF1ab/nsp31388V1388FGtcTtc55B.10.000046
ORF1ab/nsp31388V1388VgtCgtT55B.1.1.3060.002192
ORF1ab/nsp31388V1388delGTC---55B.1.617.20.000019
ORF1ab/nsp31388V1388FGtcTtc55B.1.617.20.000019
ORF1ab/nsp31388V1388delGTC---440.222222
ORF1ab/nsp31388V1388SGTCAGT14All0
ORF1ab/nsp31388V1388SGTcTCc14All0
ORF1ab/nsp31388V1388SGTCTCT14All0
ORF1ab/nsp31388V1388SGTcAGc14All0
ORF1ab/nsp31388V1388VgtCgtT44AY.360.000593
ORF1ab/nsp31388V1388VgtCgtT44AY.420.000161
ORF1ab/nsp31388V1388IGtcAtc44AY.430.000018
ORF1ab/nsp31388V1388IGtcAtc44AY.440.000024
ORF1ab/nsp31388V1388VgtCgtT34AY.9.10.000251
ORF1ab/nsp31388V1388VgtCgtG14AY.9.10.000084
ORF1ab/nsp31388V1388AgTcgCc44AZ.10.003469
ORF1ab/nsp31388V1388GgTcgGc44B.10.000037
ORF1ab/nsp31388V1388VgtCgtT44B.1.1.2320.00726
ORF1ab/nsp31388V1388FGtcTtc34B.1.1.70.000003
ORF1ab/nsp31388V1388FGtCTtT14B.1.1.70.000001
ORF1ab/nsp31388V1388VgtCgtT44B.1.177.810.000757
ORF1ab/nsp31388V1388delGTC---44B.1.2210.000284
ORF1ab/nsp31388V1388VgtCgtT44B.1.5870.00759
ORF1ab/nsp31388V1388VgtCgtT44B.1.6370.000292
ORF1ab/nsp31388V1388VgtCgtT33AY.1100.000338
ORF1ab/nsp31388V1388VgtCgtT33AY.1180.000188
ORF1ab/nsp31388V1388AgTcgCc33AY.1190.000106
ORF1ab/nsp31388V1388VgtCgtT33AY.1200.000112
ORF1ab/nsp31388V1388VgtCgtT33AY.160.001139
ORF1ab/nsp31388V1388VgtCgtT33AY.270.000194
ORF1ab/nsp31388V1388VgtCgtT33AY.290.000047
ORF1ab/nsp31388V1388AgTcgCc33AY.390.000074
ORF1ab/nsp31388V1388AgTcgCc33AY.40.000005
ORF1ab/nsp31388V1388VgtCgtT33AY.4.2.10.000447
ORF1ab/nsp31388V1388AgTcgCc33AY.430.000013
ORF1ab/nsp31388V1388VgtCgtT33AY.470.000093
ORF1ab/nsp31388V1388VgtCgtT33AY.50.000062
ORF1ab/nsp31388V1388IGtcAtc33AY.60.000123
ORF1ab/nsp31388V1388VgtCgtT33AY.650.001599
ORF1ab/nsp31388V1388VgtCgtT33AY.75.10.000541
ORF1ab/nsp31388V1388VgtCgtT33AY.910.002191
ORF1ab/nsp31388V1388VgtCgtT23AY.99.20.000184
ORF1ab/nsp31388V1388VgtCgtA13AY.99.20.000092
ORF1ab/nsp31388V1388IGtcAtc33B.1.10.000054
ORF1ab/nsp31388V1388VgtCgtT33B.1.1.1610.010601
ORF1ab/nsp31388V1388VgtCgtT23B.1.1.2140.000111
ORF1ab/nsp31388V1388VgtCgtA13B.1.1.2140.000055
ORF1ab/nsp31388V1388VgtCgtT33B.1.1.2770.002276
ORF1ab/nsp31388V1388VgtCgtT33B.1.1.4160.002715
ORF1ab/nsp31388V1388del2gTCg--23B.1.1.70.000002
ORF1ab/nsp31388V1388SGTCTCT13B.1.1.70.000001
ORF1ab/nsp31388V1388SGTcTCc13B.1.1.70.000001
ORF1ab/nsp31388V1388del2GTc--c13B.1.1.70.000001
ORF1ab/nsp31388V1388SGTCAGT13B.1.1.70.000001
ORF1ab/nsp31388V1388VgtCgtT33B.1.2200.032609
ORF1ab/nsp31388V1388VgtCgtT33B.1.2580.0002
ORF1ab/nsp31388V1388delGTC---33B.1.2580.0002
ORF1ab/nsp31388V1388AgTCgCT23B.1.3510.000059
ORF1ab/nsp31388V1388AgTcgCc13B.1.3510.00003
ORF1ab/nsp31388V1388LGtCTtA33B.1.36.190.027778
ORF1ab/nsp31388V1388VgtCgtT33B.1.36.220.003623
ORF1ab/nsp31388V1388delGTC---33B.1.5170.001281
ORF1ab/nsp31388V1388delGTC---33B.1.5250.000339
ORF1ab/nsp31388V1388delGTC---33B.1.5960.000261
ORF1ab/nsp31388V1388delGTC---33P.10.000047
ORF1ab/nsp31388V1388VgtCgtA23P.1.170.000324
ORF1ab/nsp31388V1388VgtCgtT13P.1.170.000162
ORF1ab/nsp31388V1388VgtCgtT33P.20.00056
ORF1ab/nsp31388V1388del1GTC-GT220.111111
ORF1ab/nsp31388V1388IGtcAtc120.055556
ORF1ab/nsp31388V1388IGtCAtT120.055556
ORF1ab/nsp31388V1388LGtcCtc120.055556
ORF1ab/nsp31388V1388LGtCCtT120.055556
ORF1ab/nsp31388V1388VgtCgtT12A0.000387
ORF1ab/nsp31388V1388VgtCgtA12A0.000387
ORF1ab/nsp31388V1388delGTC---22A.2.40.006734
ORF1ab/nsp31388V1388TGTcACc22All0
ORF1ab/nsp31388V1388IGtcAtc22AY.1030.000012
ORF1ab/nsp31388V1388AgTcgCc22AY.1030.000012
ORF1ab/nsp31388V1388VgtCgtT22AY.1110.000366
ORF1ab/nsp31388V1388VgtCgtT22AY.1130.000285
ORF1ab/nsp31388V1388IGtcAtc22AY.1180.000125
ORF1ab/nsp31388V1388FGtcTtc22AY.1190.000071
ORF1ab/nsp31388V1388IGtcAtc22AY.330.000134
ORF1ab/nsp31388V1388VgtCgtT22AY.4.50.000215
ORF1ab/nsp31388V1388delGTC---22AY.46.20.001271
ORF1ab/nsp31388V1388VgtCgtT22AY.5.40.000553
ORF1ab/nsp31388V1388VgtCgtT22AY.590.001059
ORF1ab/nsp31388V1388VgtCgtT22AY.60.000082
ORF1ab/nsp31388V1388VgtCgtT22AY.740.000231
ORF1ab/nsp31388V1388VgtCgtT22AY.840.000875
ORF1ab/nsp31388V1388DgTcgAc22AY.850.000854
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.100.00223
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.1760.000879
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.2890.004167
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.3330.002153
ORF1ab/nsp31388V1388FGtcTtc22B.1.1.3360.033333
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.4340.000697
ORF1ab/nsp31388V1388VgtCgtT22B.1.1.4640.002946
ORF1ab/nsp31388V1388DgTcgAc12B.1.1.70.000001
ORF1ab/nsp31388V1388DgTCgAT12B.1.1.70.000001
ORF1ab/nsp31388V1388del1Gtc-tc12B.1.1.70.000001
ORF1ab/nsp31388V1388del1gtCgt-12B.1.1.70.000001
ORF1ab/nsp31388V1388GgTcgGc12B.1.1.70.000001
ORF1ab/nsp31388V1388GgTCgGA12B.1.1.70.000001
ORF1ab/nsp31388V1388delGTC---22B.1.177.180.00232
ORF1ab/nsp31388V1388AgTcgCc22B.1.177.450.000762
ORF1ab/nsp31388V1388delGTC---22B.1.3110.000549
ORF1ab/nsp31388V1388VgtCgtT22B.1.36.180.00084
ORF1ab/nsp31388V1388VgtCgtT22B.1.4270.000101
ORF1ab/nsp31388V1388VgtCgtT22B.1.4450.023529
ORF1ab/nsp31388V1388VgtCgtT22B.1.4970.00063
ORF1ab/nsp31388V1388VgtCgtT22B.1.5960.000174
ORF1ab/nsp31388V1388VgtCgtT22C.360.001821
ORF1ab/nsp31388V1388VgtCgtT22Q.80.00033
ORF1ab/nsp31388V1388VgtCgtT110.055556
ORF1ab/nsp31388V1388AgTcgCc11A0.000387
ORF1ab/nsp31388V1388delGTC---11A0.000387
ORF1ab/nsp31388V1388VgtCgtT11A.180.05
ORF1ab/nsp31388V1388DgTcgAc11A.20.000662
ORF1ab/nsp31388V1388FGtcTtc11A.20.000662
ORF1ab/nsp31388V1388YGTcTAc11A.20.000662
ORF1ab/nsp31388V1388DgTcgAc11A.2.40.003367
ORF1ab/nsp31388V1388VgtCgtT11A.2.50.000499
ORF1ab/nsp31388V1388FGtCTtT11A.270.001656
ORF1ab/nsp31388V1388delGTC---11A.280.002646
ORF1ab/nsp31388V1388CGTCTGT11All0
ORF1ab/nsp31388V1388WGTCTGG11All0
ORF1ab/nsp31388V1388YGTcTAc11All0
ORF1ab/nsp31388V1388delGTC---11AV.10.005051
ORF1ab/nsp31388V1388VgtCgtT11AY.10.000396
ORF1ab/nsp31388V1388AgTcgCc11AY.1000.000046
ORF1ab/nsp31388V1388delGTC---11AY.1000.000046
ORF1ab/nsp31388V1388FGtcTtc11AY.1030.000006
ORF1ab/nsp31388V1388VgtCgtT11AY.1050.000643
ORF1ab/nsp31388V1388VgtCgtT11AY.1080.001103
ORF1ab/nsp31388V1388VgtCgtT11AY.110.001339
ORF1ab/nsp31388V1388IGtcAtc11AY.1190.000035
ORF1ab/nsp31388V1388VgtCgtT11AY.16.10.00047
ORF1ab/nsp31388V1388VgtCgtT11AY.20.000356
ORF1ab/nsp31388V1388delGTC---11AY.240.000431
ORF1ab/nsp31388V1388VgtCgtT11AY.240.000431
ORF1ab/nsp31388V1388LGtcCtc11AY.250.000006
ORF1ab/nsp31388V1388GgTcgGc11AY.30.00001
ORF1ab/nsp31388V1388IGtcAtc11AY.320.000532
ORF1ab/nsp31388V1388VgtCgtT11AY.320.000532
ORF1ab/nsp31388V1388AgTcgCc11AY.330.000067
ORF1ab/nsp31388V1388FGtcTtc11AY.34.10.00051
ORF1ab/nsp31388V1388AgTcgCc11AY.350.000233
ORF1ab/nsp31388V1388delGTC---11AY.360.000148
ORF1ab/nsp31388V1388WGTCTGG11AY.380.000499
ORF1ab/nsp31388V1388IGtcAtc11AY.390.000025
ORF1ab/nsp31388V1388delGTC---11AY.390.000025
ORF1ab/nsp31388V1388FGtcTtc11AY.390.000025
ORF1ab/nsp31388V1388DgTcgAc11AY.39.10.00004
ORF1ab/nsp31388V1388del2gTCg--11AY.40.000002
ORF1ab/nsp31388V1388IGtcAtc11AY.4.20.000022
ORF1ab/nsp31388V1388AgTcgCc11AY.420.00004
ORF1ab/nsp31388V1388DgTcgAc11AY.430.000004
ORF1ab/nsp31388V1388FGtcTtc11AY.430.000004
ORF1ab/nsp31388V1388DgTcgAc11AY.440.000006
ORF1ab/nsp31388V1388IGtcAtc11AY.450.000122
ORF1ab/nsp31388V1388IGtcAtc11AY.460.000104
ORF1ab/nsp31388V1388delGTC---11AY.460.000104
ORF1ab/nsp31388V1388DgTcgAc11AY.470.000031
ORF1ab/nsp31388V1388delGTC---11AY.470.000031
ORF1ab/nsp31388V1388FGtcTtc11AY.470.000031
ORF1ab/nsp31388V1388VgtCgtT11AY.480.000465
ORF1ab/nsp31388V1388delGTC---11AY.50.000021
ORF1ab/nsp31388V1388AgTcgCc11AY.50.000021
ORF1ab/nsp31388V1388VgtCgtT11AY.550.000917
ORF1ab/nsp31388V1388delGTC---11AY.600.000938
ORF1ab/nsp31388V1388VgtCgtT11AY.600.000938
ORF1ab/nsp31388V1388del2GTc--c11AY.650.000533
ORF1ab/nsp31388V1388delGTC---11AY.680.000274
ORF1ab/nsp31388V1388VgtCgtA11AY.70.000196
ORF1ab/nsp31388V1388IGtcAtc11AY.70.000196
ORF1ab/nsp31388V1388VgtCgtT11AY.7.10.000113
ORF1ab/nsp31388V1388delGTC---11AY.730.000665
ORF1ab/nsp31388V1388VgtCgtT11AY.750.000056
ORF1ab/nsp31388V1388delGTC---11AY.75.10.00018
ORF1ab/nsp31388V1388VgtCgtT11AY.810.001992
ORF1ab/nsp31388V1388VgtCgtT11AY.880.000884
ORF1ab/nsp31388V1388delGTC---11AY.9.20.000037
ORF1ab/nsp31388V1388VgtCgtT11AY.920.000287
ORF1ab/nsp31388V1388IGtcAtc11AY.930.000273
ORF1ab/nsp31388V1388VgtCgtT11AY.990.001049
ORF1ab/nsp31388V1388VgtCgtT11AZ.10.000867
ORF1ab/nsp31388V1388VgtCgtT11B0.000128
ORF1ab/nsp31388V1388delGTC---11B0.000128
ORF1ab/nsp31388V1388del2GTc--c11B0.000128
ORF1ab/nsp31388V1388GgTcgGc11B.1.10.000018
ORF1ab/nsp31388V1388AgTcgCc11B.1.10.000018
ORF1ab/nsp31388V1388DgTcgAc11B.1.10.000018
ORF1ab/nsp31388V1388DgTcgAc11B.1.1.10.000327
ORF1ab/nsp31388V1388del1Gtc-tc11B.1.1.1700.001247
ORF1ab/nsp31388V1388delGTC---11B.1.1.1920.002309
ORF1ab/nsp31388V1388delGTC---11B.1.1.2180.007692
ORF1ab/nsp31388V1388AgTcgCc11B.1.1.2310.003096
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.2840.000107
ORF1ab/nsp31388V1388AgTcgCc11B.1.1.3060.000438
ORF1ab/nsp31388V1388TGTcACc11B.1.1.3060.000438
ORF1ab/nsp31388V1388FGtCTtT11B.1.1.3060.000438
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.3070.002532
ORF1ab/nsp31388V1388delGTC---11B.1.1.3110.000358
ORF1ab/nsp31388V1388delGTC---11B.1.1.3120.001912
ORF1ab/nsp31388V1388delGTC---11B.1.1.3150.008475
ORF1ab/nsp31388V1388VgtCgtA11B.1.1.3160.000925
ORF1ab/nsp31388V1388AgTcgCc11B.1.1.3170.000412
ORF1ab/nsp31388V1388DgTcgAc11B.1.1.3180.000302
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.330.000421
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.3360.016667
ORF1ab/nsp31388V1388delGTC---11B.1.1.3480.000796
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.3760.005952
ORF1ab/nsp31388V1388AgTcgCc11B.1.1.390.00051
ORF1ab/nsp31388V1388delGTC---11B.1.1.4090.002833
ORF1ab/nsp31388V1388AgTcgCc11B.1.1.470.005348
ORF1ab/nsp31388V1388AgTcgCc11B.1.1.4860.001577
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.4860.001577
ORF1ab/nsp31388V1388IGtcAtc11B.1.1.5190.00004
ORF1ab/nsp31388V1388VgtCgtT11B.1.1.630.000386
ORF1ab/nsp31388V1388CGTCTGT11B.1.1.70.000001
ORF1ab/nsp31388V1388delGTC---11B.1.1.700.000341
ORF1ab/nsp31388V1388VgtCgtT11B.1.1040.00369
ORF1ab/nsp31388V1388AgTcgCc11B.1.1040.00369
ORF1ab/nsp31388V1388VgtCgtT11B.1.1150.021739
ORF1ab/nsp31388V1388VgtCgtA11B.1.1280.000635
ORF1ab/nsp31388V1388FGtcTtc11B.1.1460.004237
ORF1ab/nsp31388V1388VgtCgtT11B.1.1490.003425
ORF1ab/nsp31388V1388VgtCgtT11B.1.1600.000031
ORF1ab/nsp31388V1388delGTC---11B.1.1600.000031
ORF1ab/nsp31388V1388del1Gtc-tc11B.1.1610.017241
ORF1ab/nsp31388V1388FGtcTtc11B.1.1770.000013
ORF1ab/nsp31388V1388IGtcAtc11B.1.177.150.000631
ORF1ab/nsp31388V1388GgTcgGc11B.1.177.150.000631
ORF1ab/nsp31388V1388SGTcAGc11B.1.177.150.000631
ORF1ab/nsp31388V1388delGTC---11B.1.177.150.000631
ORF1ab/nsp31388V1388delGTC---11B.1.177.160.000664
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.210.000076
ORF1ab/nsp31388V1388VgtCgtA11B.1.177.320.00135
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.350.000691
ORF1ab/nsp31388V1388GgTcgGc11B.1.177.40.000211
ORF1ab/nsp31388V1388AgTcgCc11B.1.177.440.000519
ORF1ab/nsp31388V1388delGTC---11B.1.177.540.000606
ORF1ab/nsp31388V1388delGTC---11B.1.177.560.000668
ORF1ab/nsp31388V1388delGTC---11B.1.177.570.000281
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.570.000281
ORF1ab/nsp31388V1388delGTC---11B.1.177.60.000977
ORF1ab/nsp31388V1388delGTC---11B.1.177.620.001192
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.650.000665
ORF1ab/nsp31388V1388delGTC---11B.1.177.680.015152
ORF1ab/nsp31388V1388VgtCgtT11B.1.177.70.000165
ORF1ab/nsp31388V1388delGTC---11B.1.177.70.000165
ORF1ab/nsp31388V1388delGTC---11B.1.177.810.000189
ORF1ab/nsp31388V1388delGTC---11B.1.177.870.000728
ORF1ab/nsp31388V1388delGTC---11B.1.177.90.001332
ORF1ab/nsp31388V1388del1Gtc-tc11B.1.20.000009
ORF1ab/nsp31388V1388VgtCgtT11B.1.2210.000071
ORF1ab/nsp31388V1388VgtCgtT11B.1.221.10.002907
ORF1ab/nsp31388V1388IGtcAtc11B.1.2390.001221
ORF1ab/nsp31388V1388AgTcgCc11B.1.2430.00007
ORF1ab/nsp31388V1388FGtcTtc11B.1.2430.00007
ORF1ab/nsp31388V1388VgtCgtT11B.1.2430.00007
ORF1ab/nsp31388V1388DgTcgAc11B.1.2580.000067
ORF1ab/nsp31388V1388VgtCgtT11B.1.258.170.000104
ORF1ab/nsp31388V1388delGTC---11B.1.3510.00003
ORF1ab/nsp31388V1388IGtcAtc11B.1.360.000146
ORF1ab/nsp31388V1388del1gtCgt-11B.1.36.170.000494
ORF1ab/nsp31388V1388IGtcAtc11B.1.36.180.00042
ORF1ab/nsp31388V1388delGTC---11B.1.36.220.001208
ORF1ab/nsp31388V1388VgtCgtT11B.1.36.280.005747
ORF1ab/nsp31388V1388LGtCCtA11B.1.36.290.000517
ORF1ab/nsp31388V1388VgtCgtA11B.1.3750.00082
ORF1ab/nsp31388V1388FGtcTtc11B.1.3960.000706
ORF1ab/nsp31388V1388VgtCgtT11B.1.4040.001302
ORF1ab/nsp31388V1388DgTcgAc11B.1.4150.014286
ORF1ab/nsp31388V1388delGTC---11B.1.416.10.001563
ORF1ab/nsp31388V1388VgtCgtT11B.1.4260.001009
ORF1ab/nsp31388V1388IGtcAtc11B.1.4290.000024
ORF1ab/nsp31388V1388AgTcgCc11B.1.4290.000024
ORF1ab/nsp31388V1388VgtCgtT11B.1.438.10.000107
ORF1ab/nsp31388V1388VgtCgtT11B.1.4480.002625
ORF1ab/nsp31388V1388VgtCgtT11B.1.4620.007246
ORF1ab/nsp31388V1388VgtCgtT11B.1.4680.005714
ORF1ab/nsp31388V1388VgtCgtT11B.1.4990.00105
ORF1ab/nsp31388V1388GgTcgGc11B.1.5240.001406
ORF1ab/nsp31388V1388VgtCgtT11B.1.5250.000113
ORF1ab/nsp31388V1388AgTcgCc11B.1.5360.02381
ORF1ab/nsp31388V1388VgtCgtT11B.1.5430.01
ORF1ab/nsp31388V1388VgtCgtT11B.1.5480.035714
ORF1ab/nsp31388V1388FGtcTtc11B.1.5490.007194
ORF1ab/nsp31388V1388VgtCgtT11B.1.5510.00129
ORF1ab/nsp31388V1388IGtcAtc11B.1.5670.003333
ORF1ab/nsp31388V1388FGtcTtc11B.1.5680.001111
ORF1ab/nsp31388V1388delGTC---11B.1.5750.000303
ORF1ab/nsp31388V1388VgtCgtT11B.1.5750.000303
ORF1ab/nsp31388V1388FGtcTtc11B.1.5960.000087
ORF1ab/nsp31388V1388AgTcgCc11B.1.6090.000479
ORF1ab/nsp31388V1388delGTC---11B.1.617.10.000129
ORF1ab/nsp31388V1388VgtCgtT11B.1.617.10.000129
ORF1ab/nsp31388V1388AgTcgCc11B.1.617.20.000004
ORF1ab/nsp31388V1388TGTcACc11B.1.617.20.000004
ORF1ab/nsp31388V1388AgTcgCc11B.1.619.10.000641
ORF1ab/nsp31388V1388delGTC---11B.1.6210.000089
ORF1ab/nsp31388V1388VgtCgtT11B.1.6210.000089
ORF1ab/nsp31388V1388VgtCgtT11B.1.621.10.000506
ORF1ab/nsp31388V1388delGTC---11B.1.621.10.000506
ORF1ab/nsp31388V1388delGTC---11B.1.6300.005236
ORF1ab/nsp31388V1388delGTC---11B.1.6370.000073
ORF1ab/nsp31388V1388DgTcgAc11B.290.003509
ORF1ab/nsp31388V1388delGTC---11B.340.013699
ORF1ab/nsp31388V1388delGTC---11B.4.40.018868
ORF1ab/nsp31388V1388delGTC---11B.400.000364
ORF1ab/nsp31388V1388del1gtCgt-11C.350.000774
ORF1ab/nsp31388V1388VgtCgtT11D.20.000075
ORF1ab/nsp31388V1388GgTcgGc11D.20.000075
ORF1ab/nsp31388V1388VgtCgtT11N.50.001767
ORF1ab/nsp31388V1388delGTC---11P.1.150.000232
ORF1ab/nsp31388V1388VgtCgtT11P.1.150.000232
ORF1ab/nsp31388V1388delGTC---11P.20.000187
ORF1ab/nsp31388V1388FGtcTtc11P.20.000187
ORF1ab/nsp31388V1388delGTC---11Q.10.000126
ORF1ab/nsp31388V1388VgtCgtT11Q.10.000126
ORF1ab/nsp31388V1388delGTC---11Q.40.000455
ORF1ab/nsp31388V1388IGtcAtc11Q.80.000165
ORF1ab/nsp31388V1388delGTC---11Q.80.000165
ORF1ab/nsp31388V1388delGTC---11U.30.003861