CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1381

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31381A1381VA2199VnonsyngCagTa8498400.9893996860-6862
ORF1ab/nsp31381A1381VA2199VnonsyngCAgTT84980.009422856860-6862
ORF1ab/nsp31381A1381VA2199VnonsyngCAgTG84910.001177866860-6862
ORF1ab/nsp31381A1381TA2199TnonsynGcaAca3913850.9846556860-6862
ORF1ab/nsp31381A1381TA2199TnonsynGcAAcT39140.01023026860-6862
ORF1ab/nsp31381A1381TA2199TnonsynGcAAcG39110.002557546860-6862
ORF1ab/nsp31381A1381TA2199TnonsynGcAAcC39110.002557546860-6862
ORF1ab/nsp31381A1381AA2199AsyngcAgcG2511800.7171316860-6862
ORF1ab/nsp31381A1381AA2199AsyngcAgcT251640.254986860-6862
ORF1ab/nsp31381A1381AA2199AsyngcAgcC25170.02788846860-6862
ORF1ab/nsp31381A1381delA2199deldelGCA---23023016860-6862
ORF1ab/nsp31381A1381IA2199InonsynGCaATa1581010.6392416860-6862
ORF1ab/nsp31381A1381IA2199InonsynGCAATT158570.3607596860-6862
ORF1ab/nsp31381A1381KA2199KnonsynGCaAAa15515516860-6862
ORF1ab/nsp31381A1381EA2199EnonsyngCagAa93920.9892476860-6862
ORF1ab/nsp31381A1381EA2199EnonsyngCAgAG9310.01075276860-6862
ORF1ab/nsp31381A1381LA2199LnonsynGCaTTa90880.9777786860-6862
ORF1ab/nsp31381A1381LA2199LnonsynGCATTG9020.02222226860-6862
ORF1ab/nsp31381A1381SA2199SnonsynGcaTca87760.8735636860-6862
ORF1ab/nsp31381A1381SA2199SnonsynGcATcT8790.1034486860-6862
ORF1ab/nsp31381A1381SA2199SnonsynGCAAGT8710.01149436860-6862
ORF1ab/nsp31381A1381SA2199SnonsynGCAAGC8710.01149436860-6862
ORF1ab/nsp31381A1381XA2199XnonsynGCaTAa86840.9767446860-6862
ORF1ab/nsp31381A1381XA2199XnonsynGCATAG8610.01162796860-6862
ORF1ab/nsp31381A1381XA2199XnonsynGCaTGa8610.01162796860-6862
ORF1ab/nsp31381A1381NA2199NnonsynGCAAAT636316860-6862
ORF1ab/nsp31381A1381FA2199FnonsynGCATTT595916860-6862
ORF1ab/nsp31381A1381YA2199YnonsynGCATAT565616860-6862
ORF1ab/nsp31381A1381del1A2199del1delgcAgc-14100.7142866860-6862
ORF1ab/nsp31381A1381del1A2199del1delGCa-Ta1420.1428576860-6862
ORF1ab/nsp31381A1381del1A2199del1delGca-ca1410.07142866860-6862
ORF1ab/nsp31381A1381del1A2199del1delgCAg-N1410.07142866860-6862
ORF1ab/nsp31381A1381PA2199PnonsynGcaCca12100.8333336860-6862
ORF1ab/nsp31381A1381PA2199PnonsynGcACcC1210.08333336860-6862
ORF1ab/nsp31381A1381PA2199PnonsynGcACcG1210.08333336860-6862
ORF1ab/nsp31381A1381RA2199RnonsynGCaAGa650.8333336860-6862
ORF1ab/nsp31381A1381DA2199DnonsyngCAgAC640.6666676860-6862
ORF1ab/nsp31381A1381GA2199GnonsyngCagGa640.6666676860-6862
ORF1ab/nsp31381A1381DA2199DnonsyngCAgAT620.3333336860-6862
ORF1ab/nsp31381A1381GA2199GnonsyngCAgGG610.1666676860-6862
ORF1ab/nsp31381A1381GA2199GnonsyngCAgGC610.1666676860-6862
ORF1ab/nsp31381A1381RA2199RnonsynGCAAGG610.1666676860-6862
ORF1ab/nsp31381A1381del2A2199del2delgCAg--530.66860-6862
ORF1ab/nsp31381A1381del2A2199del2delGCa--a510.26860-6862
ORF1ab/nsp31381A1381del2A2199del2delGCAA--510.26860-6862
ORF1ab/nsp31381A1381QA2199QnonsynGCaCAa210.56860-6862
ORF1ab/nsp31381A1381QA2199QnonsynGCACAG210.56860-6862
ORF1ab/nsp31381A1381CA2199CnonsynGCATGT1116860-6862

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31381A1381VgCagTa840849All0.000161
ORF1ab/nsp31381A1381VgCAgTT8849All0.000002
ORF1ab/nsp31381A1381VgCAgTG1849All0
ORF1ab/nsp31381A1381TGcaAca385391All0.000074
ORF1ab/nsp31381A1381TGcAAcT4391All0.000001
ORF1ab/nsp31381A1381TGcAAcG1391All0
ORF1ab/nsp31381A1381TGcAAcC1391All0
ORF1ab/nsp31381A1381AgcAgcG180251All0.000034
ORF1ab/nsp31381A1381AgcAgcT64251All0.000012
ORF1ab/nsp31381A1381AgcAgcC7251All0.000001
ORF1ab/nsp31381A1381delGCA---230230All0.000044
ORF1ab/nsp31381A1381IGCaATa101158All0.000019
ORF1ab/nsp31381A1381IGCAATT57158All0.000011
ORF1ab/nsp31381A1381KGCaAAa155155All0.00003
ORF1ab/nsp31381A1381VgCagTa146153B.1.1.70.000131
ORF1ab/nsp31381A1381VgCAgTT7153B.1.1.70.000006
ORF1ab/nsp31381A1381TGcaAca100100B.1.617.20.000377
ORF1ab/nsp31381A1381EgCagAa9293All0.000018
ORF1ab/nsp31381A1381EgCAgAG193All0
ORF1ab/nsp31381A1381IGCaATa6293AY.250.000373
ORF1ab/nsp31381A1381IGCAATT3193AY.250.000186
ORF1ab/nsp31381A1381LGCaTTa8890All0.000017
ORF1ab/nsp31381A1381LGCATTG290All0
ORF1ab/nsp31381A1381SGcaTca7687All0.000015
ORF1ab/nsp31381A1381SGcATcT987All0.000002
ORF1ab/nsp31381A1381SGCAAGT187All0
ORF1ab/nsp31381A1381SGCAAGC187All0
ORF1ab/nsp31381A1381XGCaTAa8486All0.000016
ORF1ab/nsp31381A1381XGCATAG186All0
ORF1ab/nsp31381A1381XGCaTGa186All0
ORF1ab/nsp31381A1381KGCaAAa8585AY.250.000511
ORF1ab/nsp31381A1381delGCA---8484B.1.1.70.000075
ORF1ab/nsp31381A1381VgCagTa8080AY.420.003218
ORF1ab/nsp31381A1381VgCagTa7373B.1.1.3290.280769
ORF1ab/nsp31381A1381VgCagTa6868B.1.1.100.075808
ORF1ab/nsp31381A1381VgCagTa6767AY.30.000666
ORF1ab/nsp31381A1381NGCAAAT6363All0.000012
ORF1ab/nsp31381A1381TGcaAca5960B.1.1.70.000053
ORF1ab/nsp31381A1381TGcAAcT160B.1.1.70.000001
ORF1ab/nsp31381A1381FGCATTT5959All0.000011
ORF1ab/nsp31381A1381YGCATAT5656All0.000011
ORF1ab/nsp31381A1381XGCaTAa5353AY.250.000319
ORF1ab/nsp31381A1381TGcaAca5050AY.40.000078
ORF1ab/nsp31381A1381AgcAgcG5050AY.430.000222
ORF1ab/nsp31381A1381LGCaTTa4848AY.250.000289
ORF1ab/nsp31381A1381TGcaAca4446AY.250.000265
ORF1ab/nsp31381A1381TGcAAcT246AY.250.000012
ORF1ab/nsp31381A1381SGcaTca3542B.1.1.70.000031
ORF1ab/nsp31381A1381SGcATcT742B.1.1.70.000006
ORF1ab/nsp31381A1381AgcAgcT3440B.1.1.70.00003
ORF1ab/nsp31381A1381AgcAgcG540B.1.1.70.000004
ORF1ab/nsp31381A1381AgcAgcC140B.1.1.70.000001
ORF1ab/nsp31381A1381NGCAAAT3535AY.250.000211
ORF1ab/nsp31381A1381YGCATAT3333AY.250.000198
ORF1ab/nsp31381A1381EgCagAa3232AY.250.000192
ORF1ab/nsp31381A1381VgCagTa3131AY.40.000048
ORF1ab/nsp31381A1381FGCATTT2929AY.250.000174
ORF1ab/nsp31381A1381VgCagTa2929B.1.177.600.006335
ORF1ab/nsp31381A1381AgcAgcG2627B.1.4270.001313
ORF1ab/nsp31381A1381AgcAgcC127B.1.4270.00005
ORF1ab/nsp31381A1381VgCagTa2323AY.440.00014
ORF1ab/nsp31381A1381KGCaAAa2323B.1.1.70.000021
ORF1ab/nsp31381A1381VgCagTa2222AY.1110.004029
ORF1ab/nsp31381A1381IGCaATa1221B.1.1.70.000011
ORF1ab/nsp31381A1381IGCAATT921B.1.1.70.000008
ORF1ab/nsp31381A1381VgCagTa1919AY.1030.000118
ORF1ab/nsp31381A1381LGCaTTa1819B.1.1.70.000016
ORF1ab/nsp31381A1381LGCATTG119B.1.1.70.000001
ORF1ab/nsp31381A1381VgCagTa1818L.40.9
ORF1ab/nsp31381A1381VgCagTa1717AY.250.000102
ORF1ab/nsp31381A1381delGCA---1717AY.40.000026
ORF1ab/nsp31381A1381delGCA---1717B.1.1770.000224
ORF1ab/nsp31381A1381EgCagAa1516B.1.1.70.000013
ORF1ab/nsp31381A1381EgCAgAG116B.1.1.70.000001
ORF1ab/nsp31381A1381TGcaAca1616B.1.20.000141
ORF1ab/nsp31381A1381VgCagTa1616P.10.000252
ORF1ab/nsp31381A1381AgcAgcG1515AY.30.000149
ORF1ab/nsp31381A1381AgcAgcG1415AY.440.000085
ORF1ab/nsp31381A1381AgcAgcT115AY.440.000006
ORF1ab/nsp31381A1381VgCagTa1515B.10.000137
ORF1ab/nsp31381A1381VgCagTa1515B.1.617.20.000056
ORF1ab/nsp31381A1381del1gcAgc-1014All0.000002
ORF1ab/nsp31381A1381del1GCa-Ta214All0
ORF1ab/nsp31381A1381del1Gca-ca114All0
ORF1ab/nsp31381A1381del1gCAg-N114All0
ORF1ab/nsp31381A1381VgCagTa1414AY.430.000062
ORF1ab/nsp31381A1381FGCATTT1414B.1.1.70.000013
ORF1ab/nsp31381A1381VgCagTa1414B.1.20.000123
ORF1ab/nsp31381A1381VgCagTa1414B.1.2430.000974
ORF1ab/nsp31381A1381VgCagTa1213B.1.10.000218
ORF1ab/nsp31381A1381VgCAgTT113B.1.10.000018
ORF1ab/nsp31381A1381PGcaCca1012All0.000002
ORF1ab/nsp31381A1381PGcACcG112All0
ORF1ab/nsp31381A1381PGcACcC112All0
ORF1ab/nsp31381A1381IGCaATa611AY.1030.000037
ORF1ab/nsp31381A1381IGCAATT511AY.1030.000031
ORF1ab/nsp31381A1381TGcaAca1111AY.30.000109
ORF1ab/nsp31381A1381KGCaAAa1111AY.30.000109
ORF1ab/nsp31381A1381AgcAgcG1011AY.40.000016
ORF1ab/nsp31381A1381AgcAgcT111AY.40.000002
ORF1ab/nsp31381A1381NGCAAAT1111B.1.1.70.00001
ORF1ab/nsp31381A1381VgCagTa1010AY.200.000389
ORF1ab/nsp31381A1381delGCA---1010B.10.000092
ORF1ab/nsp31381A1381XGCaTAa1010B.1.1.70.000009
ORF1ab/nsp31381A1381VgCagTa99P.1.150.002091
ORF1ab/nsp31381A1381EgCagAa88AY.30.00008
ORF1ab/nsp31381A1381VgCagTa88AY.850.003417
ORF1ab/nsp31381A1381VgCagTa88AY.99.20.000737
ORF1ab/nsp31381A1381delGCA---88B.1.10.000145
ORF1ab/nsp31381A1381YGCATAT88B.1.1.70.000007
ORF1ab/nsp31381A1381delGCA---88B.1.617.20.00003
ORF1ab/nsp31381A1381AgcAgcG88P.1.150.001859
ORF1ab/nsp31381A1381VgCagTa77B.1.970.179487
ORF1ab/nsp31381A1381RGCaAGa56All0.000001
ORF1ab/nsp31381A1381GgCagGa46All0.000001
ORF1ab/nsp31381A1381DgCAgAC46All0.000001
ORF1ab/nsp31381A1381DgCAgAT26All0
ORF1ab/nsp31381A1381RGCAAGG16All0
ORF1ab/nsp31381A1381GgCAgGC16All0
ORF1ab/nsp31381A1381GgCAgGG16All0
ORF1ab/nsp31381A1381AgcAgcG56AY.1030.000031
ORF1ab/nsp31381A1381AgcAgcT16AY.1030.000006
ORF1ab/nsp31381A1381SGcaTca46AY.250.000024
ORF1ab/nsp31381A1381SGcATcT26AY.250.000012
ORF1ab/nsp31381A1381SGcaTca66AY.40.000009
ORF1ab/nsp31381A1381KGCaAAa66AY.440.000037
ORF1ab/nsp31381A1381TGcaAca66AY.440.000037
ORF1ab/nsp31381A1381AgcAgcG66B.1.20.000053
ORF1ab/nsp31381A1381TGcaAca46B.1.2210.000284
ORF1ab/nsp31381A1381TGcAAcC16B.1.2210.000071
ORF1ab/nsp31381A1381TGcAAcG16B.1.2210.000071
ORF1ab/nsp31381A1381delGCA---66B.1.2580.000399
ORF1ab/nsp31381A1381AgcAgcG46B.1.617.20.000015
ORF1ab/nsp31381A1381AgcAgcT26B.1.617.20.000008
ORF1ab/nsp31381A1381AgcAgcG66P.10.000095
ORF1ab/nsp31381A1381del2gCAg--35All0.000001
ORF1ab/nsp31381A1381del2GCAA--15All0
ORF1ab/nsp31381A1381del2GCa--a15All0
ORF1ab/nsp31381A1381FGCATTT55AY.1030.000031
ORF1ab/nsp31381A1381KGCaAAa55AY.1030.000031
ORF1ab/nsp31381A1381XGCaTAa55AY.1030.000031
ORF1ab/nsp31381A1381NGCAAAT55AY.1030.000031
ORF1ab/nsp31381A1381YGCATAT55AY.1030.000031
ORF1ab/nsp31381A1381LGCaTTa55AY.1030.000031
ORF1ab/nsp31381A1381TGcaAca55AY.1190.000177
ORF1ab/nsp31381A1381KGCaAAa55AY.260.000142
ORF1ab/nsp31381A1381IGCaATa35AY.260.000085
ORF1ab/nsp31381A1381IGCAATT25AY.260.000057
ORF1ab/nsp31381A1381IGCaATa35AY.440.000018
ORF1ab/nsp31381A1381IGCAATT25AY.440.000012
ORF1ab/nsp31381A1381EgCagAa55AY.740.000578
ORF1ab/nsp31381A1381VgCagTa55AY.9.20.000184
ORF1ab/nsp31381A1381AgcAgcT35AY.99.20.000276
ORF1ab/nsp31381A1381AgcAgcG25AY.99.20.000184
ORF1ab/nsp31381A1381VgCagTa55B.1.1.5190.000199
ORF1ab/nsp31381A1381delGCA---55B.1.2210.000355
ORF1ab/nsp31381A1381VgCagTa55B.1.5260.000118
ORF1ab/nsp31381A1381VgCagTa44AY.1020.000106
ORF1ab/nsp31381A1381VgCagTa44AY.1170.000338
ORF1ab/nsp31381A1381TGcaAca44AY.270.000259
ORF1ab/nsp31381A1381IGCaATa34AY.30.00003
ORF1ab/nsp31381A1381IGCAATT14AY.30.00001
ORF1ab/nsp31381A1381TGcaAca44AY.4.20.000087
ORF1ab/nsp31381A1381delGCA---44AY.4.50.00043
ORF1ab/nsp31381A1381TGcaAca44AY.470.000124
ORF1ab/nsp31381A1381TGcaAca44AY.9.20.000147
ORF1ab/nsp31381A1381AgcAgcG44B.10.000037
ORF1ab/nsp31381A1381SGcaTca44B.10.000037
ORF1ab/nsp31381A1381VgCagTa44B.1.1.10.001307
ORF1ab/nsp31381A1381VgCagTa44B.1.1.4320.005063
ORF1ab/nsp31381A1381PGcaCca34B.1.1.70.000003
ORF1ab/nsp31381A1381PGcACcG14B.1.1.70.000001
ORF1ab/nsp31381A1381TGcaAca44B.1.1770.000053
ORF1ab/nsp31381A1381AgcAgcG24B.1.1770.000026
ORF1ab/nsp31381A1381AgcAgcT14B.1.1770.000013
ORF1ab/nsp31381A1381AgcAgcC14B.1.1770.000013
ORF1ab/nsp31381A1381GgCagGa24B.1.2210.000142
ORF1ab/nsp31381A1381GgCAgGC14B.1.2210.000071
ORF1ab/nsp31381A1381GgCAgGG14B.1.2210.000071
ORF1ab/nsp31381A1381SGcaTca44B.1.2580.000266
ORF1ab/nsp31381A1381VgCagTa44B.1.5250.000453
ORF1ab/nsp31381A1381IGCaATa24P.10.000032
ORF1ab/nsp31381A1381IGCAATT24P.10.000032
ORF1ab/nsp31381A1381TGcaAca33AY.1000.000138
ORF1ab/nsp31381A1381SGcaTca33AY.1170.000254
ORF1ab/nsp31381A1381LGCaTTa33AY.260.000085
ORF1ab/nsp31381A1381XGCaTAa33AY.260.000085
ORF1ab/nsp31381A1381LGCaTTa33AY.30.00003
ORF1ab/nsp31381A1381XGCaTAa33AY.30.00003
ORF1ab/nsp31381A1381AgcAgcG33AY.340.000291
ORF1ab/nsp31381A1381TGcaAca33AY.350.000699
ORF1ab/nsp31381A1381TGcaAca33AY.390.000074
ORF1ab/nsp31381A1381TGcaAca33AY.430.000013
ORF1ab/nsp31381A1381delGCA---33AY.430.000013
ORF1ab/nsp31381A1381LGCaTTa33AY.440.000018
ORF1ab/nsp31381A1381XGCaTAa33AY.440.000018
ORF1ab/nsp31381A1381EgCagAa33AY.440.000018
ORF1ab/nsp31381A1381IGCaATa23AY.470.000062
ORF1ab/nsp31381A1381IGCAATT13AY.470.000031
ORF1ab/nsp31381A1381TGcaAca33B.10.000027
ORF1ab/nsp31381A1381del1gcAgc-23B.10.000018
ORF1ab/nsp31381A1381del1gCAg-N13B.10.000009
ORF1ab/nsp31381A1381TGcaAca33B.1.10.000054
ORF1ab/nsp31381A1381EgCagAa33B.1.10.000054
ORF1ab/nsp31381A1381TGcaAca33B.1.1.3060.001315
ORF1ab/nsp31381A1381AgcAgcT33B.1.1.3170.001235
ORF1ab/nsp31381A1381AgcAgcG23B.1.1.5190.000079
ORF1ab/nsp31381A1381AgcAgcT13B.1.1.5190.00004
ORF1ab/nsp31381A1381del1gcAgc-33B.1.1.70.000003
ORF1ab/nsp31381A1381del2gCAg--13B.1.1.70.000001
ORF1ab/nsp31381A1381del2GCAA--13B.1.1.70.000001
ORF1ab/nsp31381A1381del2GCa--a13B.1.1.70.000001
ORF1ab/nsp31381A1381delGCA---33B.1.20.000026
ORF1ab/nsp31381A1381VgCagTa33B.1.2210.000213
ORF1ab/nsp31381A1381RGCaAGa23B.1.2210.000142
ORF1ab/nsp31381A1381RGCAAGG13B.1.2210.000071
ORF1ab/nsp31381A1381AgcAgcT33B.1.2580.0002
ORF1ab/nsp31381A1381TGcaAca23B.1.2580.000133
ORF1ab/nsp31381A1381TGcAAcT13B.1.2580.000067
ORF1ab/nsp31381A1381DgCAgAC33B.1.3510.000089
ORF1ab/nsp31381A1381EgCagAa33B.1.5250.000339
ORF1ab/nsp31381A1381delGCA---33B.1.5250.000339
ORF1ab/nsp31381A1381del1gcAgc-23B.1.617.20.000008
ORF1ab/nsp31381A1381del1Gca-ca13B.1.617.20.000004
ORF1ab/nsp31381A1381VgCagTa33C.370.000348
ORF1ab/nsp31381A1381VgCagTa33D.20.000225
ORF1ab/nsp31381A1381VgCagTa220.111111
ORF1ab/nsp31381A1381delGCA---220.111111
ORF1ab/nsp31381A1381del1GCa-Ta220.111111
ORF1ab/nsp31381A1381AgcAgcT22A.270.003311
ORF1ab/nsp31381A1381QGCaCAa12All0
ORF1ab/nsp31381A1381QGCACAG12All0
ORF1ab/nsp31381A1381VgCagTa22AY.1000.000092
ORF1ab/nsp31381A1381SGcaTca22AY.1020.000053
ORF1ab/nsp31381A1381TGcaAca22AY.1030.000012
ORF1ab/nsp31381A1381AgcAgcG22AY.1100.000225
ORF1ab/nsp31381A1381TGcaAca22AY.1110.000366
ORF1ab/nsp31381A1381VgCagTa22AY.1180.000125
ORF1ab/nsp31381A1381VgCagTa22AY.1190.000071
ORF1ab/nsp31381A1381TGcaAca22AY.1200.000074
ORF1ab/nsp31381A1381VgCagTa22AY.1200.000074
ORF1ab/nsp31381A1381VgCagTa22AY.190.002281
ORF1ab/nsp31381A1381AgcAgcG22AY.200.000078
ORF1ab/nsp31381A1381IGCaATa12AY.200.000039
ORF1ab/nsp31381A1381IGCAATT12AY.200.000039
ORF1ab/nsp31381A1381TGcaAca22AY.230.000139
ORF1ab/nsp31381A1381IGCAATT12AY.230.00007
ORF1ab/nsp31381A1381IGCaATa12AY.230.00007
ORF1ab/nsp31381A1381AgcAgcT12AY.250.000006
ORF1ab/nsp31381A1381AgcAgcG12AY.250.000006
ORF1ab/nsp31381A1381YGCATAT22AY.260.000057
ORF1ab/nsp31381A1381EgCagAa22AY.260.000057
ORF1ab/nsp31381A1381TGcaAca22AY.260.000057
ORF1ab/nsp31381A1381FGCATTT22AY.260.000057
ORF1ab/nsp31381A1381NGCAAAT22AY.260.000057
ORF1ab/nsp31381A1381VgCagTa22AY.270.000129
ORF1ab/nsp31381A1381VgCagTa22AY.390.000049
ORF1ab/nsp31381A1381EgCagAa22AY.40.000003
ORF1ab/nsp31381A1381del1gcAgc-22AY.440.000012
ORF1ab/nsp31381A1381NGCAAAT22AY.440.000012
ORF1ab/nsp31381A1381YGCATAT22AY.440.000012
ORF1ab/nsp31381A1381FGCATTT22AY.440.000012
ORF1ab/nsp31381A1381AgcAgcG22AY.460.000208
ORF1ab/nsp31381A1381XGCaTAa22AY.470.000062
ORF1ab/nsp31381A1381KGCaAAa22AY.470.000062
ORF1ab/nsp31381A1381LGCaTTa22AY.470.000062
ORF1ab/nsp31381A1381delGCA---22AY.50.000041
ORF1ab/nsp31381A1381AgcAgcG12AY.5.40.000277
ORF1ab/nsp31381A1381AgcAgcT12AY.5.40.000277
ORF1ab/nsp31381A1381EgCagAa22B.10.000018
ORF1ab/nsp31381A1381VgCagTa22B.1.1.2140.000111
ORF1ab/nsp31381A1381TGcaAca22B.1.1.390.001019
ORF1ab/nsp31381A1381QGCaCAa12B.1.1.70.000001
ORF1ab/nsp31381A1381QGCACAG12B.1.1.70.000001
ORF1ab/nsp31381A1381delGCA---22B.1.177.180.00232
ORF1ab/nsp31381A1381delGCA---22B.1.177.70.00033
ORF1ab/nsp31381A1381AgcAgcC12B.1.2210.000071
ORF1ab/nsp31381A1381AgcAgcG12B.1.2210.000071
ORF1ab/nsp31381A1381VgCagTa22B.1.2410.001623
ORF1ab/nsp31381A1381VgCagTa22B.1.2580.000133
ORF1ab/nsp31381A1381VgCagTa22B.1.258.170.000208
ORF1ab/nsp31381A1381IGCaATa12B.1.5760.000907
ORF1ab/nsp31381A1381IGCAATT12B.1.5760.000907
ORF1ab/nsp31381A1381TGcaAca22B.1.5960.000174
ORF1ab/nsp31381A1381VgCagTa22B.1.5960.000174
ORF1ab/nsp31381A1381IGCAATT12B.1.6210.000089
ORF1ab/nsp31381A1381IGCaATa12B.1.6210.000089
ORF1ab/nsp31381A1381TGcaAca22B.1.6370.000146
ORF1ab/nsp31381A1381EgCagAa22C.370.000232
ORF1ab/nsp31381A1381KGCaAAa22C.370.000232
ORF1ab/nsp31381A1381XGCaTAa22P.10.000032
ORF1ab/nsp31381A1381delGCA---22P.10.000032
ORF1ab/nsp31381A1381NGCAAAT22P.10.000032
ORF1ab/nsp31381A1381LGCaTTa22P.10.000032
ORF1ab/nsp31381A1381FGCATTT22P.10.000032
ORF1ab/nsp31381A1381KGCaAAa22P.10.000032
ORF1ab/nsp31381A1381YGCATAT22P.10.000032
ORF1ab/nsp31381A1381AgcAgcG12R.10.00009
ORF1ab/nsp31381A1381AgcAgcT12R.10.00009
ORF1ab/nsp31381A1381PGcaCca110.055556
ORF1ab/nsp31381A1381TGcaAca110.055556
ORF1ab/nsp31381A1381EgCagAa110.055556
ORF1ab/nsp31381A1381KGCaAAa110.055556
ORF1ab/nsp31381A1381VgCagTa11A0.000387
ORF1ab/nsp31381A1381TGcaAca11A.20.000662
ORF1ab/nsp31381A1381del2gCAg--11A.2.40.003367
ORF1ab/nsp31381A1381AgcAgcT11A.2.40.003367
ORF1ab/nsp31381A1381delGCA---11A.280.002646
ORF1ab/nsp31381A1381VgCagTa11AD.20.000219
ORF1ab/nsp31381A1381CGCATGT11All0
ORF1ab/nsp31381A1381delGCA---11AV.10.005051
ORF1ab/nsp31381A1381KGCaAAa11AY.1000.000046
ORF1ab/nsp31381A1381EgCagAa11AY.1000.000046
ORF1ab/nsp31381A1381delGCA---11AY.1000.000046
ORF1ab/nsp31381A1381TGcaAca11AY.1020.000027
ORF1ab/nsp31381A1381SGcaTca11AY.1030.000006
ORF1ab/nsp31381A1381EgCagAa11AY.1050.000643
ORF1ab/nsp31381A1381TGcaAca11AY.1050.000643
ORF1ab/nsp31381A1381KGCaAAa11AY.1050.000643
ORF1ab/nsp31381A1381delGCA---11AY.1060.000335
ORF1ab/nsp31381A1381VgCagTa11AY.1070.000466
ORF1ab/nsp31381A1381VgCagTa11AY.1090.00074
ORF1ab/nsp31381A1381AgcAgcT11AY.1180.000063
ORF1ab/nsp31381A1381TGcaAca11AY.120.10.000321
ORF1ab/nsp31381A1381AgcAgcG11AY.130.000161
ORF1ab/nsp31381A1381TGcaAca11AY.130.000161
ORF1ab/nsp31381A1381KGCaAAa11AY.20.000356
ORF1ab/nsp31381A1381TGcaAca11AY.20.000356
ORF1ab/nsp31381A1381EgCagAa11AY.20.000356
ORF1ab/nsp31381A1381NGCAAAT11AY.200.000039
ORF1ab/nsp31381A1381LGCaTTa11AY.200.000039
ORF1ab/nsp31381A1381KGCaAAa11AY.200.000039
ORF1ab/nsp31381A1381FGCATTT11AY.200.000039
ORF1ab/nsp31381A1381XGCaTAa11AY.200.000039
ORF1ab/nsp31381A1381YGCATAT11AY.200.000039
ORF1ab/nsp31381A1381EgCagAa11AY.200.000039
ORF1ab/nsp31381A1381VgCagTa11AY.230.00007
ORF1ab/nsp31381A1381KGCaAAa11AY.230.00007
ORF1ab/nsp31381A1381NGCAAAT11AY.230.00007
ORF1ab/nsp31381A1381AgcAgcG11AY.23.10.000417
ORF1ab/nsp31381A1381AgcAgcT11AY.240.000431
ORF1ab/nsp31381A1381VgCagTa11AY.290.000016
ORF1ab/nsp31381A1381NGCAAAT11AY.30.00001
ORF1ab/nsp31381A1381YGCATAT11AY.30.00001
ORF1ab/nsp31381A1381FGCATTT11AY.30.00001
ORF1ab/nsp31381A1381EgCagAa11AY.3.10.000085
ORF1ab/nsp31381A1381TGcaAca11AY.3.10.000085
ORF1ab/nsp31381A1381KGCaAAa11AY.3.10.000085
ORF1ab/nsp31381A1381VgCagTa11AY.320.000532
ORF1ab/nsp31381A1381SGcaTca11AY.330.000067
ORF1ab/nsp31381A1381VgCagTa11AY.340.000097
ORF1ab/nsp31381A1381delGCA---11AY.360.000148
ORF1ab/nsp31381A1381delGCA---11AY.390.000025
ORF1ab/nsp31381A1381EgCagAa11AY.390.000025
ORF1ab/nsp31381A1381KGCaAAa11AY.390.000025
ORF1ab/nsp31381A1381AgcAgcT11AY.4.20.000022
ORF1ab/nsp31381A1381VgCagTa11AY.4.20.000022
ORF1ab/nsp31381A1381SGcaTca11AY.430.000004
ORF1ab/nsp31381A1381AgcAgcT11AY.450.000122
ORF1ab/nsp31381A1381TGcaAca11AY.460.000104
ORF1ab/nsp31381A1381delGCA---11AY.46.20.000635
ORF1ab/nsp31381A1381VgCagTa11AY.470.000031
ORF1ab/nsp31381A1381AgcAgcT11AY.470.000031
ORF1ab/nsp31381A1381SGcaTca11AY.470.000031
ORF1ab/nsp31381A1381YGCATAT11AY.470.000031
ORF1ab/nsp31381A1381NGCAAAT11AY.470.000031
ORF1ab/nsp31381A1381FGCATTT11AY.470.000031
ORF1ab/nsp31381A1381VgCagTa11AY.480.000465
ORF1ab/nsp31381A1381VgCagTa11AY.50.000021
ORF1ab/nsp31381A1381SGcaTca11AY.50.000021
ORF1ab/nsp31381A1381TGcaAca11AY.50.000021
ORF1ab/nsp31381A1381TGcaAca11AY.5.20.002463
ORF1ab/nsp31381A1381delGCA---11AY.520.000814
ORF1ab/nsp31381A1381TGcaAca11AY.550.000917
ORF1ab/nsp31381A1381delGCA---11AY.600.000938
ORF1ab/nsp31381A1381delGCA---11AY.650.000533
ORF1ab/nsp31381A1381SGcaTca11AY.710.000475
ORF1ab/nsp31381A1381delGCA---11AY.730.000665
ORF1ab/nsp31381A1381VgCagTa11AY.740.000116
ORF1ab/nsp31381A1381TGcaAca11AY.750.000056
ORF1ab/nsp31381A1381delGCA---11AY.75.10.00018
ORF1ab/nsp31381A1381VgCagTa11AY.790.001211
ORF1ab/nsp31381A1381VgCagTa11AY.840.000437
ORF1ab/nsp31381A1381VgCagTa11AY.90.000068
ORF1ab/nsp31381A1381delGCA---11AY.9.20.000037
ORF1ab/nsp31381A1381SGcaTca11AY.930.000273
ORF1ab/nsp31381A1381delGCA---11B0.000128
ORF1ab/nsp31381A1381SGcaTca11B0.000128
ORF1ab/nsp31381A1381KGCaAAa11B.10.000009
ORF1ab/nsp31381A1381del2gCAg--11B.10.000009
ORF1ab/nsp31381A1381LGCaTTa11B.10.000009
ORF1ab/nsp31381A1381PGcaCca11B.10.000009
ORF1ab/nsp31381A1381GgCagGa11B.10.000009
ORF1ab/nsp31381A1381RGCaAGa11B.10.000009
ORF1ab/nsp31381A1381IGCaATa11B.1.10.000018
ORF1ab/nsp31381A1381GgCagGa11B.1.10.000018
ORF1ab/nsp31381A1381PGcaCca11B.1.10.000018
ORF1ab/nsp31381A1381XGCaTAa11B.1.10.000018
ORF1ab/nsp31381A1381KGCaAAa11B.1.10.000018
ORF1ab/nsp31381A1381AgcAgcT11B.1.10.000018
ORF1ab/nsp31381A1381SGcaTca11B.1.10.000018
ORF1ab/nsp31381A1381del1gcAgc-11B.1.10.000018
ORF1ab/nsp31381A1381delGCA---11B.1.1.1700.001247
ORF1ab/nsp31381A1381delGCA---11B.1.1.2180.007692
ORF1ab/nsp31381A1381delGCA---11B.1.1.2320.001815
ORF1ab/nsp31381A1381VgCagTa11B.1.1.280.000311
ORF1ab/nsp31381A1381VgCagTa11B.1.1.2940.001266
ORF1ab/nsp31381A1381PGcaCca11B.1.1.3060.000438
ORF1ab/nsp31381A1381delGCA---11B.1.1.3110.000358
ORF1ab/nsp31381A1381delGCA---11B.1.1.3120.001912
ORF1ab/nsp31381A1381delGCA---11B.1.1.3150.008475
ORF1ab/nsp31381A1381delGCA---11B.1.1.3480.000796
ORF1ab/nsp31381A1381VgCagTa11B.1.1.3810.04
ORF1ab/nsp31381A1381VgCagTa11B.1.1.390.00051
ORF1ab/nsp31381A1381delGCA---11B.1.1.4090.002833
ORF1ab/nsp31381A1381AgcAgcG11B.1.1.4320.001266
ORF1ab/nsp31381A1381TGcaAca11B.1.1.4320.001266
ORF1ab/nsp31381A1381TGcaAca11B.1.1.4420.018519
ORF1ab/nsp31381A1381DgCAgAC11B.1.1.4590.015385
ORF1ab/nsp31381A1381AgcAgcG11B.1.1.470.005348
ORF1ab/nsp31381A1381TGcaAca11B.1.1.4860.001577
ORF1ab/nsp31381A1381TGcaAca11B.1.1.5190.00004
ORF1ab/nsp31381A1381PGcaCca11B.1.1.5190.00004
ORF1ab/nsp31381A1381DgCAgAT11B.1.1.70.000001
ORF1ab/nsp31381A1381SGcaTca11B.1.1.700.000341
ORF1ab/nsp31381A1381TGcaAca11B.1.110.30.000718
ORF1ab/nsp31381A1381delGCA---11B.1.1600.000031
ORF1ab/nsp31381A1381AgcAgcC11B.1.1600.000031
ORF1ab/nsp31381A1381delGCA---11B.1.1610.017241
ORF1ab/nsp31381A1381PGcaCca11B.1.1770.000013
ORF1ab/nsp31381A1381delGCA---11B.1.177.150.000631
ORF1ab/nsp31381A1381delGCA---11B.1.177.160.000664
ORF1ab/nsp31381A1381delGCA---11B.1.177.40.000211
ORF1ab/nsp31381A1381TGcaAca11B.1.177.440.000519
ORF1ab/nsp31381A1381PGcaCca11B.1.177.440.000519
ORF1ab/nsp31381A1381delGCA---11B.1.177.500.004695
ORF1ab/nsp31381A1381SGcaTca11B.1.177.540.000606
ORF1ab/nsp31381A1381delGCA---11B.1.177.540.000606
ORF1ab/nsp31381A1381delGCA---11B.1.177.560.000668
ORF1ab/nsp31381A1381delGCA---11B.1.177.60.000977
ORF1ab/nsp31381A1381delGCA---11B.1.177.620.001192
ORF1ab/nsp31381A1381delGCA---11B.1.177.680.015152
ORF1ab/nsp31381A1381SGcaTca11B.1.177.80.000752
ORF1ab/nsp31381A1381delGCA---11B.1.177.810.000189
ORF1ab/nsp31381A1381delGCA---11B.1.177.870.000728
ORF1ab/nsp31381A1381delGCA---11B.1.177.90.001332
ORF1ab/nsp31381A1381TGcaAca11B.1.2010.005682
ORF1ab/nsp31381A1381PGcACcC11B.1.214.20.0006
ORF1ab/nsp31381A1381IGCaATa11B.1.2210.000071
ORF1ab/nsp31381A1381EgCagAa11B.1.2210.000071
ORF1ab/nsp31381A1381SGCAAGC11B.1.2210.000071
ORF1ab/nsp31381A1381VgCagTa11B.1.2350.002519
ORF1ab/nsp31381A1381TGcaAca11B.1.2400.000216
ORF1ab/nsp31381A1381SGcaTca11B.1.2430.00007
ORF1ab/nsp31381A1381DgCAgAT11B.1.2580.000067
ORF1ab/nsp31381A1381IGCaATa11B.1.2580.000067
ORF1ab/nsp31381A1381NGCAAAT11B.1.2580.000067
ORF1ab/nsp31381A1381KGCaAAa11B.1.2580.000067
ORF1ab/nsp31381A1381EgCagAa11B.1.2580.000067
ORF1ab/nsp31381A1381delGCA---11B.1.258.160.001637
ORF1ab/nsp31381A1381TGcaAca11B.1.258.30.001675
ORF1ab/nsp31381A1381delGCA---11B.1.3250.006897
ORF1ab/nsp31381A1381VgCagTa11B.1.3490.000715
ORF1ab/nsp31381A1381VgCagTa11B.1.3510.00003
ORF1ab/nsp31381A1381AgcAgcT11B.1.3510.00003
ORF1ab/nsp31381A1381SGcaTca11B.1.360.000146
ORF1ab/nsp31381A1381delGCA---11B.1.36.170.000494
ORF1ab/nsp31381A1381AgcAgcG11B.1.36.220.001208
ORF1ab/nsp31381A1381delGCA---11B.1.36.380.001642
ORF1ab/nsp31381A1381TGcaAca11B.1.3630.012987
ORF1ab/nsp31381A1381TGcaAca11B.1.3690.000285
ORF1ab/nsp31381A1381VgCagTa11B.1.3960.000706
ORF1ab/nsp31381A1381TGcaAca11B.1.3990.001934
ORF1ab/nsp31381A1381delGCA---11B.1.4000.000429
ORF1ab/nsp31381A1381RGCaAGa11B.1.4150.014286
ORF1ab/nsp31381A1381VgCagTa11B.1.4270.00005
ORF1ab/nsp31381A1381TGcaAca11B.1.4270.00005
ORF1ab/nsp31381A1381EgCagAa11B.1.4280.00102
ORF1ab/nsp31381A1381VgCagTa11B.1.4290.000024
ORF1ab/nsp31381A1381AgcAgcT11B.1.4290.000024
ORF1ab/nsp31381A1381SGcaTca11B.1.4290.000024
ORF1ab/nsp31381A1381VgCagTa11B.1.466.20.000391
ORF1ab/nsp31381A1381SGcaTca11B.1.466.20.000391
ORF1ab/nsp31381A1381VgCagTa11B.1.4690.00361
ORF1ab/nsp31381A1381delGCA---11B.1.5170.000427
ORF1ab/nsp31381A1381AgcAgcG11B.1.5240.001406
ORF1ab/nsp31381A1381EgCagAa11B.1.5260.000024
ORF1ab/nsp31381A1381TGcaAca11B.1.5640.000426
ORF1ab/nsp31381A1381AgcAgcC11B.1.5750.000303
ORF1ab/nsp31381A1381LGCaTTa11B.1.5760.000907
ORF1ab/nsp31381A1381AgcAgcG11B.1.5760.000907
ORF1ab/nsp31381A1381CGCATGT11B.1.5760.000907
ORF1ab/nsp31381A1381XGCaTGa11B.1.5760.000907
ORF1ab/nsp31381A1381SGCAAGT11B.1.5760.000907
ORF1ab/nsp31381A1381FGCATTT11B.1.5760.000907
ORF1ab/nsp31381A1381RGCaAGa11B.1.5760.000907
ORF1ab/nsp31381A1381EgCagAa11B.1.5820.000491
ORF1ab/nsp31381A1381VgCagTa11B.1.5880.00091
ORF1ab/nsp31381A1381delGCA---11B.1.5890.007576
ORF1ab/nsp31381A1381delGCA---11B.1.5960.000087
ORF1ab/nsp31381A1381EgCagAa11B.1.5960.000087
ORF1ab/nsp31381A1381VgCagTa11B.1.6120.002653
ORF1ab/nsp31381A1381delGCA---11B.1.617.10.000129
ORF1ab/nsp31381A1381VgCAgTG11B.1.617.10.000129
ORF1ab/nsp31381A1381KGCaAAa11B.1.617.10.000129
ORF1ab/nsp31381A1381SGcaTca11B.1.617.20.000004
ORF1ab/nsp31381A1381XGCATAG11B.1.617.20.000004
ORF1ab/nsp31381A1381EgCagAa11B.1.617.20.000004
ORF1ab/nsp31381A1381KGCaAAa11B.1.617.20.000004
ORF1ab/nsp31381A1381SGcaTca11B.1.619.10.000641
ORF1ab/nsp31381A1381FGCATTT11B.1.6210.000089
ORF1ab/nsp31381A1381delGCA---11B.1.6210.000089
ORF1ab/nsp31381A1381TGcaAca11B.1.6210.000089
ORF1ab/nsp31381A1381YGCATAT11B.1.6210.000089
ORF1ab/nsp31381A1381KGCaAAa11B.1.6210.000089
ORF1ab/nsp31381A1381LGCaTTa11B.1.6210.000089
ORF1ab/nsp31381A1381NGCAAAT11B.1.6210.000089
ORF1ab/nsp31381A1381XGCaTAa11B.1.6210.000089
ORF1ab/nsp31381A1381VgCagTa11B.1.621.10.000506
ORF1ab/nsp31381A1381delGCA---11B.1.6300.005236
ORF1ab/nsp31381A1381delGCA---11B.340.013699
ORF1ab/nsp31381A1381delGCA---11B.4.40.018868
ORF1ab/nsp31381A1381delGCA---11B.400.000364
ORF1ab/nsp31381A1381EgCagAa11B.60.00091
ORF1ab/nsp31381A1381VgCagTa11C.360.000911
ORF1ab/nsp31381A1381IGCaATa11C.370.000116
ORF1ab/nsp31381A1381TGcaAca11C.370.000116
ORF1ab/nsp31381A1381AgcAgcC11C.370.000116
ORF1ab/nsp31381A1381LGCATTG11P.1.100.000269
ORF1ab/nsp31381A1381VgCagTa11P.1.130.000898
ORF1ab/nsp31381A1381AgcAgcG11P.1.140.000048
ORF1ab/nsp31381A1381TGcaAca11P.1.170.000162
ORF1ab/nsp31381A1381VgCagTa11Q.10.000126
ORF1ab/nsp31381A1381delGCA---11Q.40.000455
ORF1ab/nsp31381A1381VgCagTa11Q.80.000165
ORF1ab/nsp31381A1381delGCA---11Q.80.000165
ORF1ab/nsp31381A1381TGcaAca11R.10.00009