CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1375 | S1375F | S2193F | nonsyn | tCt | tTt | 5680 | 5680 | 1 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375P | S2193P | nonsyn | Tct | Cct | 298 | 297 | 0.996644 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375P | S2193P | nonsyn | TcT | CcA | 298 | 1 | 0.0033557 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375S | S2193S | syn | tcT | tcC | 215 | 194 | 0.902326 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375S | S2193S | syn | tcT | tcA | 215 | 17 | 0.0790698 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375S | S2193S | syn | tcT | tcG | 215 | 4 | 0.0186047 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375del | S2193del | del | TCT | --- | 150 | 150 | 1 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375Y | S2193Y | nonsyn | tCt | tAt | 95 | 95 | 1 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375C | S2193C | nonsyn | tCt | tGt | 66 | 66 | 1 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375A | S2193A | nonsyn | Tct | Gct | 56 | 55 | 0.982143 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375A | S2193A | nonsyn | TcT | GcA | 56 | 1 | 0.0178571 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375N | S2193N | nonsyn | TCt | AAt | 49 | 49 | 1 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375T | S2193T | nonsyn | Tct | Act | 14 | 13 | 0.928571 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375T | S2193T | nonsyn | TcT | AcA | 14 | 1 | 0.0714286 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375del1 | S2193del1 | del | tcT | tc- | 7 | 6 | 0.857143 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375del1 | S2193del1 | del | Tct | -ct | 7 | 1 | 0.142857 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375X | S2193X | nonsyn | tCT | tAA | 2 | 2 | 1 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375del2 | S2193del2 | del | TCt | --t | 2 | 2 | 1 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375R | S2193R | nonsyn | TCT | CGA | 2 | 1 | 0.5 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375L | S2193L | nonsyn | tCT | tTA | 2 | 1 | 0.5 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375I | S2193I | nonsyn | TCt | ATt | 2 | 1 | 0.5 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375I | S2193I | nonsyn | TCT | ATA | 2 | 1 | 0.5 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375L | S2193L | nonsyn | TCt | CTt | 2 | 1 | 0.5 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375G | S2193G | nonsyn | TCt | GGt | 2 | 1 | 0.5 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375G | S2193G | nonsyn | TCT | GGA | 2 | 1 | 0.5 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375R | S2193R | nonsyn | TCt | CGt | 2 | 1 | 0.5 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375K | S2193K | nonsyn | TCT | AAA | 1 | 1 | 1 | 6842-6844 |
ORF1ab/nsp3 | 1375 | S1375W | S2193W | nonsyn | tCT | tGG | 1 | 1 | 1 | 6842-6844 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 5680 | 5680 | All | 0.001086 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2294 | 2294 | B.1.1.7 | 0.002054 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 303 | 303 | B.1.433 | 0.968051 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 297 | 298 | All | 0.000057 |
ORF1ab/nsp3 | 1375 | S1375P | TcT | CcA | 1 | 298 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 274 | 274 | AY.4 | 0.000426 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 253 | 253 | AY.4 | 0.000394 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 221 | 221 | P.1.14 | 0.010564 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 194 | 215 | All | 0.000037 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcA | 17 | 215 | All | 0.000003 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcG | 4 | 215 | All | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 155 | 155 | B.1.617.2 | 0.000584 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 150 | 150 | All | 0.000029 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 147 | 147 | AY.44 | 0.000895 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 143 | 143 | AY.4.2 | 0.003101 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 130 | 130 | AY.3 | 0.001293 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 108 | 108 | P.1 | 0.001701 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 100 | 100 | AY.5 | 0.002065 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 95 | 95 | All | 0.000018 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 89 | 89 | B.1.2 | 0.000784 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 85 | 85 | AY.25 | 0.000511 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 74 | 74 | AY.103 | 0.000459 |
ORF1ab/nsp3 | 1375 | S1375C | tCt | tGt | 66 | 66 | All | 0.000013 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 63 | 63 | B.1.429 | 0.001482 |
ORF1ab/nsp3 | 1375 | S1375C | tCt | tGt | 62 | 62 | B.1.1.7 | 0.000056 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 57 | 57 | B.1.177.6 | 0.055664 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 55 | 56 | All | 0.000011 |
ORF1ab/nsp3 | 1375 | S1375A | TcT | GcA | 1 | 56 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 56 | 56 | AY.116 | 0.01606 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 56 | 56 | B.1.1.7 | 0.00005 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 54 | 54 | B.1.1.347 | 0.981818 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 53 | 53 | P.1.15 | 0.012314 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 51 | 51 | B.1 | 0.000467 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 49 | 49 | All | 0.000009 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 45 | 45 | AY.43 | 0.000199 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 43 | 43 | B.1.619.1 | 0.027582 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 40 | 40 | B.1.513 | 0.555556 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 39 | 39 | B.1.177.45 | 0.014868 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 38 | 38 | B.1.399 | 0.073501 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 34 | 34 | B.1.177 | 0.000448 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 33 | 33 | AY.20 | 0.001283 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 33 | 33 | B.1.351 | 0.000981 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 32 | 32 | AY.47 | 0.000995 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 32 | 32 | B.1.1 | 0.000581 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 32 | 32 | R.1 | 0.00288 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 31 | 31 | B.1.243 | 0.002157 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 28 | 28 | AY.35 | 0.006525 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 28 | 28 | B.1.526 | 0.000658 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 26 | 26 | B.1.427 | 0.001313 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 13 | 25 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcA | 12 | 25 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 25 | 25 | B.1.628 | 0.008809 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 23 | 23 | B.1.595 | 0.006002 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 21 | 21 | A.1 | 0.005919 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 21 | 21 | B.1.1.170 | 0.026185 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 21 | 21 | B.1.637 | 0.001535 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 20 | 20 | AY.116.1 | 0.006229 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 20 | 20 | AY.42 | 0.000805 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 17 | 17 | AY.4.5 | 0.001827 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 17 | 17 | B.1.1.265 | 0.053628 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 16 | 16 | AY.100 | 0.000736 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 15 | 16 | B.1.1 | 0.000272 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcA | 1 | 16 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 16 | 16 | B.1.621 | 0.001416 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 13 | 14 | All | 0.000002 |
ORF1ab/nsp3 | 1375 | S1375T | TcT | AcA | 1 | 14 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 13 | 14 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 1375 | S1375A | TcT | GcA | 1 | 14 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 13 | 13 | B.1.596 | 0.001133 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 12 | 12 | Q.1 | 0.001516 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 9 | 11 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcA | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcG | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 10 | 10 | AY.46 | 0.001041 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 10 | 10 | B.1.1.512 | 0.285714 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 10 | 10 | B.1.177.60 | 0.002184 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 9 | 9 | A.3 | 0.018868 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 9 | 9 | AH.3 | 0.034221 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 9 | 9 | B.1.1.318 | 0.002716 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 9 | 9 | B.1.36.31 | 0.015762 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 9 | 9 | B.1.524 | 0.012658 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 8 | 8 | B.1.1.523 | 0.0125 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 8 | 8 | B.1.195 | 0.040201 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 8 | 8 | B.1.236 | 0.016427 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 8 | 8 | B.1.396 | 0.005646 |
ORF1ab/nsp3 | 1375 | S1375del1 | tcT | tc- | 6 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375del1 | Tct | -ct | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 7 | 7 | AZ.4 | 0.02349 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 6 | 6 | AY.30 | 0.002374 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 5 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1375 | S1375P | TcT | CcA | 1 | 6 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 6 | 6 | B.1.627 | 0.012121 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 6 | 6 | C.3 | 0.045802 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 4 | 5 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcG | 1 | 5 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 5 | 5 | B.1.367 | 0.003962 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 5 | 5 | B.1.423 | 0.05102 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | AY.120.2 | 0.005141 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | B.1.509 | 0.003463 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | B.1.631 | 0.013468 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.1.107 | 0.096774 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 3 | 3 | B.1.1.299 | 0.036585 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.177.54 | 0.001819 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcA | 2 | 3 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 3 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | B.1.570 | 0.008824 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | C.37.1 | 0.007853 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375I | TCT | ATA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375T | TcT | AcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375I | TCt | ATt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1375 | S1375X | tCT | tAA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375del2 | TCt | --t | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375G | TCT | GGA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375L | tCT | tTA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375R | TCT | CGA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375I | TCt | ATt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375I | TCT | ATA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375R | TCt | CGt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375L | TCt | CTt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375G | TCt | GGt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | AU.1 | 0.002532 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1375 | S1375C | tCt | tGt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1375 | S1375del1 | tcT | tc- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.1.14 | 0.034483 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.1.204 | 0.006079 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 1375 | S1375R | TCT | CGA | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375G | TCt | GGt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375R | TCt | CGt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375G | TCT | GGA | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 2 | 2 | Q.7 | 0.002222 |
ORF1ab/nsp3 | 1375 | S1375L | tCT | tTA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375K | TCT | AAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375X | tCT | tAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1375 | S1375K | TCT | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375W | tCT | tGG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1375 | S1375C | tCt | tGt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1375 | S1375del2 | TCt | --t | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1375 | S1375C | tCt | tGt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp3 | 1375 | S1375L | TCt | CTt | 1 | 1 | B.1.1.347 | 0.018182 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.401 | 0.066667 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1375 | S1375del1 | tcT | tc- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.449 | 0.022727 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1375 | S1375X | tCT | tAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375del1 | tcT | tc- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375del2 | TCt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.26 | 0.006993 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1375 | S1375del1 | tcT | tc- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.252 | 0.006623 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | B.1.330 | 0.028571 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1375 | S1375P | Tct | Cct | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1375 | S1375del1 | tcT | tc- | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp3 | 1375 | S1375T | Tct | Act | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 1375 | S1375W | tCT | tGG | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1375 | S1375del1 | Tct | -ct | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcG | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1375 | S1375Y | tCt | tAt | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 1375 | S1375A | Tct | Gct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1375 | S1375S | tcT | tcC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1375 | S1375F | tCt | tTt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1375 | S1375del | TCT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1375 | S1375N | TCt | AAt | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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