CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1375

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31375S1375FS2193FnonsyntCttTt5680568016842-6844
ORF1ab/nsp31375S1375PS2193PnonsynTctCct2982970.9966446842-6844
ORF1ab/nsp31375S1375PS2193PnonsynTcTCcA29810.00335576842-6844
ORF1ab/nsp31375S1375SS2193SsyntcTtcC2151940.9023266842-6844
ORF1ab/nsp31375S1375SS2193SsyntcTtcA215170.07906986842-6844
ORF1ab/nsp31375S1375SS2193SsyntcTtcG21540.01860476842-6844
ORF1ab/nsp31375S1375delS2193deldelTCT---15015016842-6844
ORF1ab/nsp31375S1375YS2193YnonsyntCttAt959516842-6844
ORF1ab/nsp31375S1375CS2193CnonsyntCttGt666616842-6844
ORF1ab/nsp31375S1375AS2193AnonsynTctGct56550.9821436842-6844
ORF1ab/nsp31375S1375AS2193AnonsynTcTGcA5610.01785716842-6844
ORF1ab/nsp31375S1375NS2193NnonsynTCtAAt494916842-6844
ORF1ab/nsp31375S1375TS2193TnonsynTctAct14130.9285716842-6844
ORF1ab/nsp31375S1375TS2193TnonsynTcTAcA1410.07142866842-6844
ORF1ab/nsp31375S1375del1S2193del1deltcTtc-760.8571436842-6844
ORF1ab/nsp31375S1375del1S2193del1delTct-ct710.1428576842-6844
ORF1ab/nsp31375S1375XS2193XnonsyntCTtAA2216842-6844
ORF1ab/nsp31375S1375del2S2193del2delTCt--t2216842-6844
ORF1ab/nsp31375S1375RS2193RnonsynTCTCGA210.56842-6844
ORF1ab/nsp31375S1375LS2193LnonsyntCTtTA210.56842-6844
ORF1ab/nsp31375S1375IS2193InonsynTCtATt210.56842-6844
ORF1ab/nsp31375S1375IS2193InonsynTCTATA210.56842-6844
ORF1ab/nsp31375S1375LS2193LnonsynTCtCTt210.56842-6844
ORF1ab/nsp31375S1375GS2193GnonsynTCtGGt210.56842-6844
ORF1ab/nsp31375S1375GS2193GnonsynTCTGGA210.56842-6844
ORF1ab/nsp31375S1375RS2193RnonsynTCtCGt210.56842-6844
ORF1ab/nsp31375S1375KS2193KnonsynTCTAAA1116842-6844
ORF1ab/nsp31375S1375WS2193WnonsyntCTtGG1116842-6844

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31375S1375FtCttTt56805680All0.001086
ORF1ab/nsp31375S1375FtCttTt22942294B.1.1.70.002054
ORF1ab/nsp31375S1375FtCttTt303303B.1.4330.968051
ORF1ab/nsp31375S1375PTctCct297298All0.000057
ORF1ab/nsp31375S1375PTcTCcA1298All0
ORF1ab/nsp31375S1375PTctCct274274AY.40.000426
ORF1ab/nsp31375S1375FtCttTt253253AY.40.000394
ORF1ab/nsp31375S1375FtCttTt221221P.1.140.010564
ORF1ab/nsp31375S1375StcTtcC194215All0.000037
ORF1ab/nsp31375S1375StcTtcA17215All0.000003
ORF1ab/nsp31375S1375StcTtcG4215All0.000001
ORF1ab/nsp31375S1375FtCttTt155155B.1.617.20.000584
ORF1ab/nsp31375S1375delTCT---150150All0.000029
ORF1ab/nsp31375S1375FtCttTt147147AY.440.000895
ORF1ab/nsp31375S1375FtCttTt143143AY.4.20.003101
ORF1ab/nsp31375S1375FtCttTt130130AY.30.001293
ORF1ab/nsp31375S1375FtCttTt108108P.10.001701
ORF1ab/nsp31375S1375FtCttTt100100AY.50.002065
ORF1ab/nsp31375S1375YtCttAt9595All0.000018
ORF1ab/nsp31375S1375FtCttTt8989B.1.20.000784
ORF1ab/nsp31375S1375FtCttTt8585AY.250.000511
ORF1ab/nsp31375S1375FtCttTt7474AY.1030.000459
ORF1ab/nsp31375S1375CtCttGt6666All0.000013
ORF1ab/nsp31375S1375FtCttTt6363B.1.4290.001482
ORF1ab/nsp31375S1375CtCttGt6262B.1.1.70.000056
ORF1ab/nsp31375S1375StcTtcC5757B.1.177.60.055664
ORF1ab/nsp31375S1375ATctGct5556All0.000011
ORF1ab/nsp31375S1375ATcTGcA156All0
ORF1ab/nsp31375S1375FtCttTt5656AY.1160.01606
ORF1ab/nsp31375S1375delTCT---5656B.1.1.70.00005
ORF1ab/nsp31375S1375FtCttTt5454B.1.1.3470.981818
ORF1ab/nsp31375S1375FtCttTt5353P.1.150.012314
ORF1ab/nsp31375S1375FtCttTt5151B.10.000467
ORF1ab/nsp31375S1375NTCtAAt4949All0.000009
ORF1ab/nsp31375S1375FtCttTt4545AY.430.000199
ORF1ab/nsp31375S1375FtCttTt4343B.1.619.10.027582
ORF1ab/nsp31375S1375FtCttTt4040B.1.5130.555556
ORF1ab/nsp31375S1375FtCttTt3939B.1.177.450.014868
ORF1ab/nsp31375S1375FtCttTt3838B.1.3990.073501
ORF1ab/nsp31375S1375FtCttTt3434B.1.1770.000448
ORF1ab/nsp31375S1375FtCttTt3333AY.200.001283
ORF1ab/nsp31375S1375FtCttTt3333B.1.3510.000981
ORF1ab/nsp31375S1375FtCttTt3232AY.470.000995
ORF1ab/nsp31375S1375FtCttTt3232B.1.10.000581
ORF1ab/nsp31375S1375FtCttTt3232R.10.00288
ORF1ab/nsp31375S1375FtCttTt3131B.1.2430.002157
ORF1ab/nsp31375S1375FtCttTt2828AY.350.006525
ORF1ab/nsp31375S1375FtCttTt2828B.1.5260.000658
ORF1ab/nsp31375S1375FtCttTt2626B.1.4270.001313
ORF1ab/nsp31375S1375StcTtcC1325AY.40.00002
ORF1ab/nsp31375S1375StcTtcA1225AY.40.000019
ORF1ab/nsp31375S1375FtCttTt2525B.1.6280.008809
ORF1ab/nsp31375S1375FtCttTt2323B.1.1.5190.000913
ORF1ab/nsp31375S1375FtCttTt2323B.1.5950.006002
ORF1ab/nsp31375S1375FtCttTt2222AY.1020.000583
ORF1ab/nsp31375S1375StcTtcC2222AY.440.000134
ORF1ab/nsp31375S1375FtCttTt2121A.10.005919
ORF1ab/nsp31375S1375FtCttTt2121B.1.1.1700.026185
ORF1ab/nsp31375S1375FtCttTt2121B.1.6370.001535
ORF1ab/nsp31375S1375StcTtcC2020AY.116.10.006229
ORF1ab/nsp31375S1375FtCttTt2020AY.420.000805
ORF1ab/nsp31375S1375NTCtAAt1919B.1.1.70.000017
ORF1ab/nsp31375S1375FtCttTt1717AY.4.50.001827
ORF1ab/nsp31375S1375FtCttTt1717B.1.1.2650.053628
ORF1ab/nsp31375S1375YtCttAt1717P.10.000268
ORF1ab/nsp31375S1375FtCttTt1616AY.1000.000736
ORF1ab/nsp31375S1375StcTtcC1516B.1.10.000272
ORF1ab/nsp31375S1375StcTtcA116B.1.10.000018
ORF1ab/nsp31375S1375FtCttTt1616B.1.6210.001416
ORF1ab/nsp31375S1375YtCttAt1515B.1.1.70.000013
ORF1ab/nsp31375S1375TTctAct1314All0.000002
ORF1ab/nsp31375S1375TTcTAcA114All0
ORF1ab/nsp31375S1375ATctGct1314B.1.1.70.000012
ORF1ab/nsp31375S1375ATcTGcA114B.1.1.70.000001
ORF1ab/nsp31375S1375delTCT---1313AY.40.00002
ORF1ab/nsp31375S1375FtCttTt1313B.1.5960.001133
ORF1ab/nsp31375S1375YtCttAt1212B.1.20.000106
ORF1ab/nsp31375S1375FtCttTt1212C.370.001393
ORF1ab/nsp31375S1375FtCttTt1212Q.10.001516
ORF1ab/nsp31375S1375FtCttTt1111AY.290.000174
ORF1ab/nsp31375S1375StcTtcC911B.1.617.20.000034
ORF1ab/nsp31375S1375StcTtcA111B.1.617.20.000004
ORF1ab/nsp31375S1375StcTtcG111B.1.617.20.000004
ORF1ab/nsp31375S1375FtCttTt1010AY.460.001041
ORF1ab/nsp31375S1375FtCttTt1010B.1.1.5120.285714
ORF1ab/nsp31375S1375FtCttTt1010B.1.177.600.002184
ORF1ab/nsp31375S1375FtCttTt99A.30.018868
ORF1ab/nsp31375S1375FtCttTt99AH.30.034221
ORF1ab/nsp31375S1375FtCttTt99AY.1190.000318
ORF1ab/nsp31375S1375FtCttTt99AY.390.000222
ORF1ab/nsp31375S1375FtCttTt99AY.60.00037
ORF1ab/nsp31375S1375FtCttTt99B.1.1.3180.002716
ORF1ab/nsp31375S1375delTCT---99B.1.1770.000119
ORF1ab/nsp31375S1375FtCttTt99B.1.2580.000599
ORF1ab/nsp31375S1375FtCttTt99B.1.36.310.015762
ORF1ab/nsp31375S1375FtCttTt99B.1.5240.012658
ORF1ab/nsp31375S1375FtCttTt88AY.1200.000297
ORF1ab/nsp31375S1375YtCttAt88AY.40.000012
ORF1ab/nsp31375S1375YtCttAt88B.1.1.5230.0125
ORF1ab/nsp31375S1375FtCttTt88B.1.1600.00025
ORF1ab/nsp31375S1375FtCttTt88B.1.1950.040201
ORF1ab/nsp31375S1375FtCttTt88B.1.2360.016427
ORF1ab/nsp31375S1375FtCttTt88B.1.360.001167
ORF1ab/nsp31375S1375FtCttTt88B.1.3960.005646
ORF1ab/nsp31375S1375del1tcTtc-67All0.000001
ORF1ab/nsp31375S1375del1Tct-ct17All0
ORF1ab/nsp31375S1375ATctGct77AY.1030.000043
ORF1ab/nsp31375S1375FtCttTt77AY.330.000467
ORF1ab/nsp31375S1375FtCttTt77AY.99.20.000645
ORF1ab/nsp31375S1375FtCttTt77AZ.40.02349
ORF1ab/nsp31375S1375StcTtcC66AY.250.000036
ORF1ab/nsp31375S1375FtCttTt66AY.300.002374
ORF1ab/nsp31375S1375FtCttTt66AY.39.10.000238
ORF1ab/nsp31375S1375PTctCct56B.1.1.70.000004
ORF1ab/nsp31375S1375PTcTCcA16B.1.1.70.000001
ORF1ab/nsp31375S1375FtCttTt66B.1.5250.000679
ORF1ab/nsp31375S1375delTCT---66B.1.617.20.000023
ORF1ab/nsp31375S1375YtCttAt66B.1.6270.012121
ORF1ab/nsp31375S1375FtCttTt66C.30.045802
ORF1ab/nsp31375S1375FtCttTt66Q.30.00087
ORF1ab/nsp31375S1375FtCttTt55AY.130.000805
ORF1ab/nsp31375S1375FtCttTt55AY.230.000349
ORF1ab/nsp31375S1375NTCtAAt55AY.250.00003
ORF1ab/nsp31375S1375FtCttTt55AY.260.000142
ORF1ab/nsp31375S1375delTCT---55AY.4.50.000537
ORF1ab/nsp31375S1375StcTtcC55AY.50.000103
ORF1ab/nsp31375S1375FtCttTt55AY.610.000524
ORF1ab/nsp31375S1375FtCttTt55AY.750.00028
ORF1ab/nsp31375S1375StcTtcC45B.1.20.000035
ORF1ab/nsp31375S1375StcTtcG15B.1.20.000009
ORF1ab/nsp31375S1375FtCttTt55B.1.3670.003962
ORF1ab/nsp31375S1375FtCttTt55B.1.4230.05102
ORF1ab/nsp31375S1375ATctGct55P.10.000079
ORF1ab/nsp31375S1375FtCttTt55P.1.70.001596
ORF1ab/nsp31375S1375FtCttTt44AY.1170.000338
ORF1ab/nsp31375S1375FtCttTt44AY.120.20.005141
ORF1ab/nsp31375S1375FtCttTt44AY.340.000388
ORF1ab/nsp31375S1375NTCtAAt44AY.390.000099
ORF1ab/nsp31375S1375YtCttAt44AY.440.000024
ORF1ab/nsp31375S1375ATctGct44AY.440.000024
ORF1ab/nsp31375S1375FtCttTt44AY.450.000487
ORF1ab/nsp31375S1375FtCttTt44B.1.1.280.001245
ORF1ab/nsp31375S1375FtCttTt44B.1.177.70.000659
ORF1ab/nsp31375S1375FtCttTt44B.1.2210.000284
ORF1ab/nsp31375S1375FtCttTt44B.1.2410.003247
ORF1ab/nsp31375S1375FtCttTt44B.1.36.290.002069
ORF1ab/nsp31375S1375FtCttTt44B.1.5090.003463
ORF1ab/nsp31375S1375FtCttTt44B.1.6310.013468
ORF1ab/nsp31375S1375FtCttTt44C.360.003643
ORF1ab/nsp31375S1375FtCttTt44D.20.0003
ORF1ab/nsp31375S1375YtCttAt33AY.1030.000019
ORF1ab/nsp31375S1375StcTtcC33AY.1170.000254
ORF1ab/nsp31375S1375TTctAct33AY.40.000005
ORF1ab/nsp31375S1375NTCtAAt33AY.430.000013
ORF1ab/nsp31375S1375delTCT---33AY.430.000013
ORF1ab/nsp31375S1375FtCttTt33AY.540.000286
ORF1ab/nsp31375S1375FtCttTt33AY.90.000203
ORF1ab/nsp31375S1375StcTtcC33B.10.000027
ORF1ab/nsp31375S1375delTCT---33B.10.000027
ORF1ab/nsp31375S1375FtCttTt33B.1.1.1070.096774
ORF1ab/nsp31375S1375ATctGct33B.1.1.2990.036585
ORF1ab/nsp31375S1375ATctGct33B.1.1.3260.005282
ORF1ab/nsp31375S1375FtCttTt33B.1.1.330.001263
ORF1ab/nsp31375S1375StcTtcC33B.1.1.70.000003
ORF1ab/nsp31375S1375TTctAct33B.1.1.70.000003
ORF1ab/nsp31375S1375FtCttTt33B.1.177.540.001819
ORF1ab/nsp31375S1375FtCttTt33B.1.177.730.001699
ORF1ab/nsp31375S1375delTCT---33B.1.2210.000213
ORF1ab/nsp31375S1375FtCttTt33B.1.2400.000647
ORF1ab/nsp31375S1375delTCT---33B.1.2580.0002
ORF1ab/nsp31375S1375FtCttTt33B.1.466.20.001174
ORF1ab/nsp31375S1375FtCttTt33B.1.4970.000944
ORF1ab/nsp31375S1375FtCttTt33B.1.4990.003151
ORF1ab/nsp31375S1375StcTtcA23B.1.5250.000226
ORF1ab/nsp31375S1375StcTtcC13B.1.5250.000113
ORF1ab/nsp31375S1375FtCttTt33B.1.5510.003871
ORF1ab/nsp31375S1375FtCttTt33B.1.5610.001191
ORF1ab/nsp31375S1375FtCttTt33B.1.5700.008824
ORF1ab/nsp31375S1375ATctGct33B.1.617.20.000011
ORF1ab/nsp31375S1375FtCttTt33C.37.10.007853
ORF1ab/nsp31375S1375FtCttTt33Q.80.000495
ORF1ab/nsp31375S1375delTCT---220.111111
ORF1ab/nsp31375S1375TTctAct120.055556
ORF1ab/nsp31375S1375ITCTATA120.055556
ORF1ab/nsp31375S1375TTcTAcA120.055556
ORF1ab/nsp31375S1375ITCtATt120.055556
ORF1ab/nsp31375S1375FtCttTt22A.2.50.000998
ORF1ab/nsp31375S1375FtCttTt22A.23.10.001408
ORF1ab/nsp31375S1375XtCTtAA22All0
ORF1ab/nsp31375S1375del2TCt--t22All0
ORF1ab/nsp31375S1375GTCTGGA12All0
ORF1ab/nsp31375S1375LtCTtTA12All0
ORF1ab/nsp31375S1375RTCTCGA12All0
ORF1ab/nsp31375S1375ITCtATt12All0
ORF1ab/nsp31375S1375ITCTATA12All0
ORF1ab/nsp31375S1375RTCtCGt12All0
ORF1ab/nsp31375S1375LTCtCTt12All0
ORF1ab/nsp31375S1375GTCtGGt12All0
ORF1ab/nsp31375S1375FtCttTt22AU.10.002532
ORF1ab/nsp31375S1375FtCttTt22AU.20.004843
ORF1ab/nsp31375S1375StcTtcC22AY.1030.000012
ORF1ab/nsp31375S1375CtCttGt22AY.1190.000071
ORF1ab/nsp31375S1375FtCttTt22AY.120.10.000642
ORF1ab/nsp31375S1375NTCtAAt22AY.1210.000271
ORF1ab/nsp31375S1375FtCttTt22AY.1210.000271
ORF1ab/nsp31375S1375FtCttTt22AY.140.000176
ORF1ab/nsp31375S1375NTCtAAt22AY.200.000078
ORF1ab/nsp31375S1375StcTtcC22AY.230.000139
ORF1ab/nsp31375S1375FtCttTt22AY.360.000296
ORF1ab/nsp31375S1375PTctCct22AY.420.00008
ORF1ab/nsp31375S1375delTCT---22AY.50.000041
ORF1ab/nsp31375S1375FtCttTt22AY.5.40.000553
ORF1ab/nsp31375S1375PTctCct22AY.540.000191
ORF1ab/nsp31375S1375StcTtcC22AY.570.001312
ORF1ab/nsp31375S1375StcTtcC22AY.60.000082
ORF1ab/nsp31375S1375FtCttTt22AY.70.000392
ORF1ab/nsp31375S1375FtCttTt22B0.000256
ORF1ab/nsp31375S1375del1tcTtc-22B.10.000018
ORF1ab/nsp31375S1375delTCT---22B.1.10.000036
ORF1ab/nsp31375S1375FtCttTt22B.1.1.140.034483
ORF1ab/nsp31375S1375YtCttAt22B.1.1.1410.004024
ORF1ab/nsp31375S1375FtCttTt22B.1.1.1760.000879
ORF1ab/nsp31375S1375FtCttTt22B.1.1.2040.006079
ORF1ab/nsp31375S1375FtCttTt22B.1.1.2220.000408
ORF1ab/nsp31375S1375FtCttTt22B.1.1.3060.000877
ORF1ab/nsp31375S1375FtCttTt22B.1.1.390.001019
ORF1ab/nsp31375S1375NTCtAAt22B.1.1.3980.006452
ORF1ab/nsp31375S1375RTCTCGA12B.1.1.70.000001
ORF1ab/nsp31375S1375GTCtGGt12B.1.1.70.000001
ORF1ab/nsp31375S1375RTCtCGt12B.1.1.70.000001
ORF1ab/nsp31375S1375GTCTGGA12B.1.1.70.000001
ORF1ab/nsp31375S1375FtCttTt22B.1.110.30.001437
ORF1ab/nsp31375S1375FtCttTt22B.1.1470.001512
ORF1ab/nsp31375S1375YtCttAt22B.1.1770.000026
ORF1ab/nsp31375S1375FtCttTt22B.1.177.100.001756
ORF1ab/nsp31375S1375delTCT---22B.1.177.180.00232
ORF1ab/nsp31375S1375FtCttTt22B.1.177.40.000422
ORF1ab/nsp31375S1375FtCttTt22B.1.177.650.001331
ORF1ab/nsp31375S1375StcTtcC22B.1.3510.000059
ORF1ab/nsp31375S1375FtCttTt22B.1.36.190.018519
ORF1ab/nsp31375S1375FtCttTt22B.1.36.360.001204
ORF1ab/nsp31375S1375FtCttTt22B.1.438.10.000215
ORF1ab/nsp31375S1375StcTtcC22B.1.5960.000174
ORF1ab/nsp31375S1375YtCttAt22B.1.6090.000959
ORF1ab/nsp31375S1375FtCttTt22B.1.617.10.000258
ORF1ab/nsp31375S1375PTctCct22B.1.617.20.000008
ORF1ab/nsp31375S1375YtCttAt22B.1.617.20.000008
ORF1ab/nsp31375S1375NTCtAAt22B.1.617.20.000008
ORF1ab/nsp31375S1375FtCttTt22B.1.6190.001742
ORF1ab/nsp31375S1375ATctGct22B.1.6210.000177
ORF1ab/nsp31375S1375FtCttTt22B.1.6270.00404
ORF1ab/nsp31375S1375FtCttTt22C.36.30.001134
ORF1ab/nsp31375S1375FtCttTt22P.1.120.000968
ORF1ab/nsp31375S1375YtCttAt22P.20.000373
ORF1ab/nsp31375S1375YtCttAt22Q.10.000253
ORF1ab/nsp31375S1375FtCttTt22Q.70.002222
ORF1ab/nsp31375S1375LtCTtTA110.055556
ORF1ab/nsp31375S1375StcTtcA110.055556
ORF1ab/nsp31375S1375FtCttTt110.055556
ORF1ab/nsp31375S1375YtCttAt110.055556
ORF1ab/nsp31375S1375KTCTAAA110.055556
ORF1ab/nsp31375S1375NTCtAAt110.055556
ORF1ab/nsp31375S1375XtCTtAA110.055556
ORF1ab/nsp31375S1375StcTtcC11A.10.000282
ORF1ab/nsp31375S1375delTCT---11A.280.002646
ORF1ab/nsp31375S1375StcTtcC11A.30.002096
ORF1ab/nsp31375S1375StcTtcC11AE.80.000489
ORF1ab/nsp31375S1375KTCTAAA11All0
ORF1ab/nsp31375S1375WtCTtGG11All0
ORF1ab/nsp31375S1375StcTtcC11AY.1000.000046
ORF1ab/nsp31375S1375PTctCct11AY.1000.000046
ORF1ab/nsp31375S1375delTCT---11AY.1000.000046
ORF1ab/nsp31375S1375FtCttTt11AY.1010.00049
ORF1ab/nsp31375S1375YtCttAt11AY.1020.000027
ORF1ab/nsp31375S1375NTCtAAt11AY.1020.000027
ORF1ab/nsp31375S1375PTctCct11AY.1030.000006
ORF1ab/nsp31375S1375FtCttTt11AY.1050.000643
ORF1ab/nsp31375S1375FtCttTt11AY.1080.001103
ORF1ab/nsp31375S1375FtCttTt11AY.1090.00074
ORF1ab/nsp31375S1375FtCttTt11AY.1100.000113
ORF1ab/nsp31375S1375FtCttTt11AY.1130.000142
ORF1ab/nsp31375S1375FtCttTt11AY.1140.000231
ORF1ab/nsp31375S1375FtCttTt11AY.1180.000063
ORF1ab/nsp31375S1375PTctCct11AY.1190.000035
ORF1ab/nsp31375S1375CtCttGt11AY.140.000088
ORF1ab/nsp31375S1375FtCttTt11AY.160.00038
ORF1ab/nsp31375S1375FtCttTt11AY.16.10.00047
ORF1ab/nsp31375S1375delTCT---11AY.190.00114
ORF1ab/nsp31375S1375ATctGct11AY.230.00007
ORF1ab/nsp31375S1375StcTtcC11AY.260.000028
ORF1ab/nsp31375S1375StcTtcC11AY.290.000016
ORF1ab/nsp31375S1375ATctGct11AY.290.000016
ORF1ab/nsp31375S1375PTctCct11AY.30.00001
ORF1ab/nsp31375S1375ATctGct11AY.30.00001
ORF1ab/nsp31375S1375FtCttTt11AY.3.10.000085
ORF1ab/nsp31375S1375delTCT---11AY.360.000148
ORF1ab/nsp31375S1375FtCttTt11AY.370.000316
ORF1ab/nsp31375S1375ATctGct11AY.390.000025
ORF1ab/nsp31375S1375delTCT---11AY.390.000025
ORF1ab/nsp31375S1375PTctCct11AY.390.000025
ORF1ab/nsp31375S1375ATctGct11AY.40.000002
ORF1ab/nsp31375S1375del2TCt--t11AY.40.000002
ORF1ab/nsp31375S1375TTctAct11AY.4.20.000022
ORF1ab/nsp31375S1375FtCttTt11AY.4.40.000409
ORF1ab/nsp31375S1375FtCttTt11AY.400.000964
ORF1ab/nsp31375S1375PTctCct11AY.430.000004
ORF1ab/nsp31375S1375ATctGct11AY.430.000004
ORF1ab/nsp31375S1375NTCtAAt11AY.440.000006
ORF1ab/nsp31375S1375delTCT---11AY.46.20.000635
ORF1ab/nsp31375S1375YtCttAt11AY.46.30.000934
ORF1ab/nsp31375S1375YtCttAt11AY.46.60.000072
ORF1ab/nsp31375S1375ATctGct11AY.46.60.000072
ORF1ab/nsp31375S1375NTCtAAt11AY.46.60.000072
ORF1ab/nsp31375S1375FtCttTt11AY.46.60.000072
ORF1ab/nsp31375S1375ATctGct11AY.470.000031
ORF1ab/nsp31375S1375delTCT---11AY.520.000814
ORF1ab/nsp31375S1375PTctCct11AY.530.000288
ORF1ab/nsp31375S1375FtCttTt11AY.590.00053
ORF1ab/nsp31375S1375StcTtcC11AY.590.00053
ORF1ab/nsp31375S1375delTCT---11AY.600.000938
ORF1ab/nsp31375S1375delTCT---11AY.650.000533
ORF1ab/nsp31375S1375FtCttTt11AY.680.000274
ORF1ab/nsp31375S1375FtCttTt11AY.690.000187
ORF1ab/nsp31375S1375FtCttTt11AY.7.10.000113
ORF1ab/nsp31375S1375FtCttTt11AY.710.000475
ORF1ab/nsp31375S1375delTCT---11AY.730.000665
ORF1ab/nsp31375S1375ATctGct11AY.750.000056
ORF1ab/nsp31375S1375delTCT---11AY.750.000056
ORF1ab/nsp31375S1375NTCtAAt11AY.820.001357
ORF1ab/nsp31375S1375FtCttTt11AY.820.001357
ORF1ab/nsp31375S1375StcTtcC11AY.840.000437
ORF1ab/nsp31375S1375FtCttTt11AY.9.20.000037
ORF1ab/nsp31375S1375delTCT---11AY.9.20.000037
ORF1ab/nsp31375S1375FtCttTt11AY.930.000273
ORF1ab/nsp31375S1375FtCttTt11AY.940.000443
ORF1ab/nsp31375S1375PTctCct11AY.98.10.000048
ORF1ab/nsp31375S1375YtCttAt11B.10.000009
ORF1ab/nsp31375S1375PTctCct11B.10.000009
ORF1ab/nsp31375S1375PTctCct11B.1.10.000018
ORF1ab/nsp31375S1375FtCttTt11B.1.1.1590.004673
ORF1ab/nsp31375S1375FtCttTt11B.1.1.1740.003378
ORF1ab/nsp31375S1375FtCttTt11B.1.1.1960.005714
ORF1ab/nsp31375S1375FtCttTt11B.1.1.2280.003049
ORF1ab/nsp31375S1375FtCttTt11B.1.1.250.000569
ORF1ab/nsp31375S1375FtCttTt11B.1.1.2630.001558
ORF1ab/nsp31375S1375CtCttGt11B.1.1.2790.001121
ORF1ab/nsp31375S1375TTctAct11B.1.1.280.000311
ORF1ab/nsp31375S1375FtCttTt11B.1.1.2820.011628
ORF1ab/nsp31375S1375FtCttTt11B.1.1.2990.012195
ORF1ab/nsp31375S1375TTctAct11B.1.1.3060.000438
ORF1ab/nsp31375S1375delTCT---11B.1.1.3110.000358
ORF1ab/nsp31375S1375delTCT---11B.1.1.3120.001912
ORF1ab/nsp31375S1375ATctGct11B.1.1.3400.045455
ORF1ab/nsp31375S1375LTCtCTt11B.1.1.3470.018182
ORF1ab/nsp31375S1375delTCT---11B.1.1.3480.000796
ORF1ab/nsp31375S1375delTCT---11B.1.1.3610.045455
ORF1ab/nsp31375S1375FtCttTt11B.1.1.3720.000689
ORF1ab/nsp31375S1375FtCttTt11B.1.1.3890.006061
ORF1ab/nsp31375S1375StcTtcC11B.1.1.3890.006061
ORF1ab/nsp31375S1375FtCttTt11B.1.1.4010.066667
ORF1ab/nsp31375S1375FtCttTt11B.1.1.4090.002833
ORF1ab/nsp31375S1375delTCT---11B.1.1.4090.002833
ORF1ab/nsp31375S1375del1tcTtc-11B.1.1.4480.002033
ORF1ab/nsp31375S1375FtCttTt11B.1.1.4490.022727
ORF1ab/nsp31375S1375FtCttTt11B.1.1.500.000679
ORF1ab/nsp31375S1375StcTtcC11B.1.1.500.000679
ORF1ab/nsp31375S1375XtCTtAA11B.1.1.70.000001
ORF1ab/nsp31375S1375del1tcTtc-11B.1.1.70.000001
ORF1ab/nsp31375S1375del2TCt--t11B.1.1.70.000001
ORF1ab/nsp31375S1375FtCttTt11B.1.1110.001175
ORF1ab/nsp31375S1375FtCttTt11B.1.1430.021277
ORF1ab/nsp31375S1375delTCT---11B.1.1600.000031
ORF1ab/nsp31375S1375delTCT---11B.1.1610.017241
ORF1ab/nsp31375S1375FtCttTt11B.1.1700.00431
ORF1ab/nsp31375S1375StcTtcC11B.1.1770.000013
ORF1ab/nsp31375S1375delTCT---11B.1.177.150.000631
ORF1ab/nsp31375S1375delTCT---11B.1.177.160.000664
ORF1ab/nsp31375S1375FtCttTt11B.1.177.180.00116
ORF1ab/nsp31375S1375FtCttTt11B.1.177.210.000076
ORF1ab/nsp31375S1375FtCttTt11B.1.177.260.006993
ORF1ab/nsp31375S1375FtCttTt11B.1.177.30.007634
ORF1ab/nsp31375S1375StcTtcC11B.1.177.40.000211
ORF1ab/nsp31375S1375delTCT---11B.1.177.40.000211
ORF1ab/nsp31375S1375FtCttTt11B.1.177.430.001477
ORF1ab/nsp31375S1375delTCT---11B.1.177.540.000606
ORF1ab/nsp31375S1375delTCT---11B.1.177.560.000668
ORF1ab/nsp31375S1375delTCT---11B.1.177.630.002703
ORF1ab/nsp31375S1375del1tcTtc-11B.1.177.70.000165
ORF1ab/nsp31375S1375delTCT---11B.1.177.70.000165
ORF1ab/nsp31375S1375FtCttTt11B.1.177.750.001041
ORF1ab/nsp31375S1375FtCttTt11B.1.177.770.000726
ORF1ab/nsp31375S1375FtCttTt11B.1.177.810.000189
ORF1ab/nsp31375S1375delTCT---11B.1.177.810.000189
ORF1ab/nsp31375S1375FtCttTt11B.1.177.840.006667
ORF1ab/nsp31375S1375FtCttTt11B.1.177.850.005435
ORF1ab/nsp31375S1375FtCttTt11B.1.177.860.000183
ORF1ab/nsp31375S1375delTCT---11B.1.177.870.000728
ORF1ab/nsp31375S1375delTCT---11B.1.177.90.001332
ORF1ab/nsp31375S1375FtCttTt11B.1.1790.003759
ORF1ab/nsp31375S1375StcTtcC11B.1.1990.004132
ORF1ab/nsp31375S1375delTCT---11B.1.20.000009
ORF1ab/nsp31375S1375TTctAct11B.1.20.000009
ORF1ab/nsp31375S1375TTctAct11B.1.2010.005682
ORF1ab/nsp31375S1375FtCttTt11B.1.2140.003663
ORF1ab/nsp31375S1375NTCtAAt11B.1.2210.000071
ORF1ab/nsp31375S1375FtCttTt11B.1.2340.000132
ORF1ab/nsp31375S1375StcTtcC11B.1.2430.00007
ORF1ab/nsp31375S1375FtCttTt11B.1.2520.006623
ORF1ab/nsp31375S1375ATctGct11B.1.2580.000067
ORF1ab/nsp31375S1375FtCttTt11B.1.258.110.000396
ORF1ab/nsp31375S1375delTCT---11B.1.258.160.001637
ORF1ab/nsp31375S1375FtCttTt11B.1.258.170.000104
ORF1ab/nsp31375S1375FtCttTt11B.1.3110.000275
ORF1ab/nsp31375S1375YtCttAt11B.1.3300.028571
ORF1ab/nsp31375S1375FtCttTt11B.1.3490.000715
ORF1ab/nsp31375S1375StcTtcC11B.1.351.20.000303
ORF1ab/nsp31375S1375YtCttAt11B.1.351.20.000303
ORF1ab/nsp31375S1375FtCttTt11B.1.351.20.000303
ORF1ab/nsp31375S1375FtCttTt11B.1.351.30.000876
ORF1ab/nsp31375S1375PTctCct11B.1.360.000146
ORF1ab/nsp31375S1375PTctCct11B.1.36.160.001425
ORF1ab/nsp31375S1375delTCT---11B.1.36.170.000494
ORF1ab/nsp31375S1375FtCttTt11B.1.3690.000285
ORF1ab/nsp31375S1375del1tcTtc-11B.1.3690.000285
ORF1ab/nsp31375S1375FtCttTt11B.1.3810.007812
ORF1ab/nsp31375S1375FtCttTt11B.1.3980.002976
ORF1ab/nsp31375S1375FtCttTt11B.1.4050.012346
ORF1ab/nsp31375S1375FtCttTt11B.1.4080.00369
ORF1ab/nsp31375S1375FtCttTt11B.1.415.10.007576
ORF1ab/nsp31375S1375FtCttTt11B.1.4260.001009
ORF1ab/nsp31375S1375ATctGct11B.1.4270.00005
ORF1ab/nsp31375S1375NTCtAAt11B.1.4290.000024
ORF1ab/nsp31375S1375ATctGct11B.1.4290.000024
ORF1ab/nsp31375S1375StcTtcC11B.1.4290.000024
ORF1ab/nsp31375S1375StcTtcC11B.1.438.10.000107
ORF1ab/nsp31375S1375FtCttTt11B.1.4560.003268
ORF1ab/nsp31375S1375StcTtcG11B.1.466.20.000391
ORF1ab/nsp31375S1375FtCttTt11B.1.4680.005714
ORF1ab/nsp31375S1375FtCttTt11B.1.4700.001404
ORF1ab/nsp31375S1375StcTtcC11B.1.4730.019231
ORF1ab/nsp31375S1375FtCttTt11B.1.5030.002488
ORF1ab/nsp31375S1375delTCT---11B.1.5170.000427
ORF1ab/nsp31375S1375delTCT---11B.1.5250.000113
ORF1ab/nsp31375S1375YtCttAt11B.1.5250.000113
ORF1ab/nsp31375S1375YtCttAt11B.1.5260.000024
ORF1ab/nsp31375S1375NTCtAAt11B.1.5260.000024
ORF1ab/nsp31375S1375FtCttTt11B.1.575.10.002439
ORF1ab/nsp31375S1375FtCttTt11B.1.5760.000907
ORF1ab/nsp31375S1375FtCttTt11B.1.5850.027778
ORF1ab/nsp31375S1375TTctAct11B.1.5950.000261
ORF1ab/nsp31375S1375delTCT---11B.1.6210.000089
ORF1ab/nsp31375S1375delTCT---11B.1.6300.005236
ORF1ab/nsp31375S1375ATctGct11B.1.6370.000073
ORF1ab/nsp31375S1375FtCttTt11B.280.003279
ORF1ab/nsp31375S1375delTCT---11B.4.40.018868
ORF1ab/nsp31375S1375delTCT---11B.400.000364
ORF1ab/nsp31375S1375FtCttTt11B.550.00295
ORF1ab/nsp31375S1375WtCTtGG11B.60.00091
ORF1ab/nsp31375S1375StcTtcC11C.160.00106
ORF1ab/nsp31375S1375delTCT---11C.350.000774
ORF1ab/nsp31375S1375del1Tct-ct11C.360.000911
ORF1ab/nsp31375S1375StcTtcG11C.36.30.000567
ORF1ab/nsp31375S1375StcTtcC11C.370.000116
ORF1ab/nsp31375S1375YtCttAt11C.40.01
ORF1ab/nsp31375S1375ATctGct11D.20.000075
ORF1ab/nsp31375S1375FtCttTt11N.40.004255
ORF1ab/nsp31375S1375FtCttTt11N.50.001767
ORF1ab/nsp31375S1375delTCT---11P.10.000016
ORF1ab/nsp31375S1375StcTtcC11P.10.000016
ORF1ab/nsp31375S1375FtCttTt11P.1.160.000374
ORF1ab/nsp31375S1375FtCttTt11P.1.170.000162
ORF1ab/nsp31375S1375FtCttTt11P.1.17.10.000875
ORF1ab/nsp31375S1375FtCttTt11P.1.20.001156
ORF1ab/nsp31375S1375FtCttTt11P.1.80.004785
ORF1ab/nsp31375S1375FtCttTt11P.20.000187
ORF1ab/nsp31375S1375NTCtAAt11Q.10.000126
ORF1ab/nsp31375S1375FtCttTt11Q.40.000455
ORF1ab/nsp31375S1375delTCT---11Q.80.000165
ORF1ab/nsp31375S1375NTCtAAt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.