CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1375

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31375S1375FS2193FnonsyntCttTt5680568016842-6844
ORF1ab/nsp31375S1375PS2193PnonsynTctCct2982970.9966446842-6844
ORF1ab/nsp31375S1375PS2193PnonsynTcTCcA29810.00335576842-6844
ORF1ab/nsp31375S1375SS2193SsyntcTtcC2151940.9023266842-6844
ORF1ab/nsp31375S1375SS2193SsyntcTtcA215170.07906986842-6844
ORF1ab/nsp31375S1375SS2193SsyntcTtcG21540.01860476842-6844
ORF1ab/nsp31375S1375delS2193deldelTCT---15015016842-6844
ORF1ab/nsp31375S1375YS2193YnonsyntCttAt959516842-6844
ORF1ab/nsp31375S1375CS2193CnonsyntCttGt666616842-6844
ORF1ab/nsp31375S1375AS2193AnonsynTctGct56550.9821436842-6844
ORF1ab/nsp31375S1375AS2193AnonsynTcTGcA5610.01785716842-6844
ORF1ab/nsp31375S1375NS2193NnonsynTCtAAt494916842-6844
ORF1ab/nsp31375S1375TS2193TnonsynTctAct14130.9285716842-6844
ORF1ab/nsp31375S1375TS2193TnonsynTcTAcA1410.07142866842-6844
ORF1ab/nsp31375S1375del1S2193del1deltcTtc-760.8571436842-6844
ORF1ab/nsp31375S1375del1S2193del1delTct-ct710.1428576842-6844
ORF1ab/nsp31375S1375XS2193XnonsyntCTtAA2216842-6844
ORF1ab/nsp31375S1375del2S2193del2delTCt--t2216842-6844
ORF1ab/nsp31375S1375RS2193RnonsynTCTCGA210.56842-6844
ORF1ab/nsp31375S1375LS2193LnonsyntCTtTA210.56842-6844
ORF1ab/nsp31375S1375IS2193InonsynTCtATt210.56842-6844
ORF1ab/nsp31375S1375IS2193InonsynTCTATA210.56842-6844
ORF1ab/nsp31375S1375LS2193LnonsynTCtCTt210.56842-6844
ORF1ab/nsp31375S1375GS2193GnonsynTCtGGt210.56842-6844
ORF1ab/nsp31375S1375GS2193GnonsynTCTGGA210.56842-6844
ORF1ab/nsp31375S1375RS2193RnonsynTCtCGt210.56842-6844
ORF1ab/nsp31375S1375KS2193KnonsynTCTAAA1116842-6844
ORF1ab/nsp31375S1375WS2193WnonsyntCTtGG1116842-6844

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31375S1375FtCttTt56805680All0.001086
ORF1ab/nsp31375S1375FtCttTt22942294B.1.1.70.002054
ORF1ab/nsp31375S1375FtCttTt303303B.1.4330.968051
ORF1ab/nsp31375S1375PTctCct297298All0.000057
ORF1ab/nsp31375S1375PTcTCcA1298All0
ORF1ab/nsp31375S1375PTctCct274274AY.40.000426
ORF1ab/nsp31375S1375FtCttTt253253AY.40.000394
ORF1ab/nsp31375S1375FtCttTt221221P.1.140.010564
ORF1ab/nsp31375S1375StcTtcC194215All0.000037
ORF1ab/nsp31375S1375StcTtcA17215All0.000003
ORF1ab/nsp31375S1375StcTtcG4215All0.000001
ORF1ab/nsp31375S1375FtCttTt155155B.1.617.20.000584
ORF1ab/nsp31375S1375delTCT---150150All0.000029
ORF1ab/nsp31375S1375FtCttTt147147AY.440.000895
ORF1ab/nsp31375S1375FtCttTt143143AY.4.20.003101
ORF1ab/nsp31375S1375FtCttTt130130AY.30.001293
ORF1ab/nsp31375S1375FtCttTt108108P.10.001701
ORF1ab/nsp31375S1375FtCttTt100100AY.50.002065
ORF1ab/nsp31375S1375YtCttAt9595All0.000018
ORF1ab/nsp31375S1375FtCttTt8989B.1.20.000784
ORF1ab/nsp31375S1375FtCttTt8585AY.250.000511
ORF1ab/nsp31375S1375FtCttTt7474AY.1030.000459
ORF1ab/nsp31375S1375CtCttGt6666All0.000013
ORF1ab/nsp31375S1375FtCttTt6363B.1.4290.001482
ORF1ab/nsp31375S1375CtCttGt6262B.1.1.70.000056
ORF1ab/nsp31375S1375StcTtcC5757B.1.177.60.055664
ORF1ab/nsp31375S1375ATctGct5556All0.000011
ORF1ab/nsp31375S1375ATcTGcA156All0
ORF1ab/nsp31375S1375FtCttTt5656AY.1160.01606
ORF1ab/nsp31375S1375delTCT---5656B.1.1.70.00005
ORF1ab/nsp31375S1375FtCttTt5454B.1.1.3470.981818
ORF1ab/nsp31375S1375FtCttTt5353P.1.150.012314
ORF1ab/nsp31375S1375FtCttTt5151B.10.000467
ORF1ab/nsp31375S1375NTCtAAt4949All0.000009
ORF1ab/nsp31375S1375FtCttTt4545AY.430.000199
ORF1ab/nsp31375S1375FtCttTt4343B.1.619.10.027582
ORF1ab/nsp31375S1375FtCttTt4040B.1.5130.555556
ORF1ab/nsp31375S1375FtCttTt3939B.1.177.450.014868
ORF1ab/nsp31375S1375FtCttTt3838B.1.3990.073501
ORF1ab/nsp31375S1375FtCttTt3434B.1.1770.000448
ORF1ab/nsp31375S1375FtCttTt3333AY.200.001283
ORF1ab/nsp31375S1375FtCttTt3333B.1.3510.000981
ORF1ab/nsp31375S1375FtCttTt3232AY.470.000995
ORF1ab/nsp31375S1375FtCttTt3232B.1.10.000581
ORF1ab/nsp31375S1375FtCttTt3232R.10.00288
ORF1ab/nsp31375S1375FtCttTt3131B.1.2430.002157
ORF1ab/nsp31375S1375FtCttTt2828AY.350.006525
ORF1ab/nsp31375S1375FtCttTt2828B.1.5260.000658
ORF1ab/nsp31375S1375FtCttTt2626B.1.4270.001313
ORF1ab/nsp31375S1375StcTtcC1325AY.40.00002
ORF1ab/nsp31375S1375StcTtcA1225AY.40.000019
ORF1ab/nsp31375S1375FtCttTt2525B.1.6280.008809
ORF1ab/nsp31375S1375FtCttTt2323B.1.1.5190.000913
ORF1ab/nsp31375S1375FtCttTt2323B.1.5950.006002
ORF1ab/nsp31375S1375FtCttTt2222AY.1020.000583
ORF1ab/nsp31375S1375StcTtcC2222AY.440.000134
ORF1ab/nsp31375S1375FtCttTt2121A.10.005919
ORF1ab/nsp31375S1375FtCttTt2121B.1.1.1700.026185
ORF1ab/nsp31375S1375FtCttTt2121B.1.6370.001535
ORF1ab/nsp31375S1375StcTtcC2020AY.116.10.006229
ORF1ab/nsp31375S1375FtCttTt2020AY.420.000805
ORF1ab/nsp31375S1375NTCtAAt1919B.1.1.70.000017
ORF1ab/nsp31375S1375FtCttTt1717AY.4.50.001827
ORF1ab/nsp31375S1375FtCttTt1717B.1.1.2650.053628
ORF1ab/nsp31375S1375YtCttAt1717P.10.000268
ORF1ab/nsp31375S1375FtCttTt1616AY.1000.000736
ORF1ab/nsp31375S1375StcTtcC1516B.1.10.000272
ORF1ab/nsp31375S1375StcTtcA116B.1.10.000018
ORF1ab/nsp31375S1375FtCttTt1616B.1.6210.001416
ORF1ab/nsp31375S1375YtCttAt1515B.1.1.70.000013
ORF1ab/nsp31375S1375TTctAct1314All0.000002
ORF1ab/nsp31375S1375TTcTAcA114All0
ORF1ab/nsp31375S1375ATctGct1314B.1.1.70.000012
ORF1ab/nsp31375S1375ATcTGcA114B.1.1.70.000001
ORF1ab/nsp31375S1375delTCT---1313AY.40.00002
ORF1ab/nsp31375S1375FtCttTt1313B.1.5960.001133
ORF1ab/nsp31375S1375YtCttAt1212B.1.20.000106
ORF1ab/nsp31375S1375FtCttTt1212C.370.001393
ORF1ab/nsp31375S1375FtCttTt1212Q.10.001516
ORF1ab/nsp31375S1375FtCttTt1111AY.290.000174
ORF1ab/nsp31375S1375StcTtcC911B.1.617.20.000034
ORF1ab/nsp31375S1375StcTtcA111B.1.617.20.000004
ORF1ab/nsp31375S1375StcTtcG111B.1.617.20.000004
ORF1ab/nsp31375S1375FtCttTt1010AY.460.001041
ORF1ab/nsp31375S1375FtCttTt1010B.1.1.5120.285714
ORF1ab/nsp31375S1375FtCttTt1010B.1.177.600.002184
ORF1ab/nsp31375S1375FtCttTt99A.30.018868
ORF1ab/nsp31375S1375FtCttTt99AH.30.034221
ORF1ab/nsp31375S1375FtCttTt99AY.1190.000318
ORF1ab/nsp31375S1375FtCttTt99AY.390.000222
ORF1ab/nsp31375S1375FtCttTt99AY.60.00037
ORF1ab/nsp31375S1375FtCttTt99B.1.1.3180.002716
ORF1ab/nsp31375S1375delTCT---99B.1.1770.000119
ORF1ab/nsp31375S1375FtCttTt99B.1.2580.000599
ORF1ab/nsp31375S1375FtCttTt99B.1.36.310.015762
ORF1ab/nsp31375S1375FtCttTt99B.1.5240.012658
ORF1ab/nsp31375S1375FtCttTt88AY.1200.000297
ORF1ab/nsp31375S1375YtCttAt88AY.40.000012
ORF1ab/nsp31375S1375YtCttAt88B.1.1.5230.0125
ORF1ab/nsp31375S1375FtCttTt88B.1.1600.00025
ORF1ab/nsp31375S1375FtCttTt88B.1.1950.040201
ORF1ab/nsp31375S1375FtCttTt88B.1.2360.016427
ORF1ab/nsp31375S1375FtCttTt88B.1.360.001167
ORF1ab/nsp31375S1375FtCttTt88B.1.3960.005646
ORF1ab/nsp31375S1375del1tcTtc-67All0.000001
ORF1ab/nsp31375S1375del1Tct-ct17All0
ORF1ab/nsp31375S1375ATctGct77AY.1030.000043
ORF1ab/nsp31375S1375FtCttTt77AY.330.000467
ORF1ab/nsp31375S1375FtCttTt77AY.99.20.000645
ORF1ab/nsp31375S1375FtCttTt77AZ.40.02349
ORF1ab/nsp31375S1375StcTtcC66AY.250.000036
ORF1ab/nsp31375S1375FtCttTt66AY.300.002374
ORF1ab/nsp31375S1375FtCttTt66AY.39.10.000238
ORF1ab/nsp31375S1375PTctCct56B.1.1.70.000004
ORF1ab/nsp31375S1375PTcTCcA16B.1.1.70.000001
ORF1ab/nsp31375S1375FtCttTt66B.1.5250.000679
ORF1ab/nsp31375S1375delTCT---66B.1.617.20.000023
ORF1ab/nsp31375S1375YtCttAt66B.1.6270.012121
ORF1ab/nsp31375S1375FtCttTt66C.30.045802
ORF1ab/nsp31375S1375FtCttTt66Q.30.00087
ORF1ab/nsp31375S1375FtCttTt55AY.130.000805
ORF1ab/nsp31375S1375FtCttTt55AY.230.000349
ORF1ab/nsp31375S1375NTCtAAt55AY.250.00003
ORF1ab/nsp31375S1375FtCttTt55AY.260.000142
ORF1ab/nsp31375S1375delTCT---55AY.4.50.000537
ORF1ab/nsp31375S1375StcTtcC55AY.50.000103
ORF1ab/nsp31375S1375FtCttTt55AY.610.000524
ORF1ab/nsp31375S1375FtCttTt55AY.750.00028
ORF1ab/nsp31375S1375StcTtcC45B.1.20.000035
ORF1ab/nsp31375S1375StcTtcG15B.1.20.000009
ORF1ab/nsp31375S1375FtCttTt55B.1.3670.003962
ORF1ab/nsp31375S1375FtCttTt55B.1.4230.05102
ORF1ab/nsp31375S1375ATctGct55P.10.000079
ORF1ab/nsp31375S1375FtCttTt55P.1.70.001596
ORF1ab/nsp31375S1375FtCttTt44AY.1170.000338
ORF1ab/nsp31375S1375FtCttTt44AY.120.20.005141
ORF1ab/nsp31375S1375FtCttTt44AY.340.000388
ORF1ab/nsp31375S1375NTCtAAt44AY.390.000099
ORF1ab/nsp31375S1375YtCttAt44AY.440.000024
ORF1ab/nsp31375S1375ATctGct44AY.440.000024
ORF1ab/nsp31375S1375FtCttTt44AY.450.000487
ORF1ab/nsp31375S1375FtCttTt44B.1.1.280.001245
ORF1ab/nsp31375S1375FtCttTt44B.1.177.70.000659
ORF1ab/nsp31375S1375FtCttTt44B.1.2210.000284
ORF1ab/nsp31375S1375FtCttTt44B.1.2410.003247
ORF1ab/nsp31375S1375FtCttTt44B.1.36.290.002069
ORF1ab/nsp31375S1375FtCttTt44B.1.5090.003463
ORF1ab/nsp31375S1375FtCttTt44B.1.6310.013468
ORF1ab/nsp31375S1375FtCttTt44C.360.003643
ORF1ab/nsp31375S1375FtCttTt44D.20.0003
ORF1ab/nsp31375S1375YtCttAt33AY.1030.000019
ORF1ab/nsp31375S1375StcTtcC33AY.1170.000254
ORF1ab/nsp31375S1375TTctAct33AY.40.000005
ORF1ab/nsp31375S1375NTCtAAt33AY.430.000013
ORF1ab/nsp31375S1375delTCT---33AY.430.000013
ORF1ab/nsp31375S1375FtCttTt33AY.540.000286
ORF1ab/nsp31375S1375FtCttTt33AY.90.000203
ORF1ab/nsp31375S1375StcTtcC33B.10.000027
ORF1ab/nsp31375S1375delTCT---33B.10.000027
ORF1ab/nsp31375S1375FtCttTt33B.1.1.1070.096774
ORF1ab/nsp31375S1375ATctGct33B.1.1.2990.036585
ORF1ab/nsp31375S1375ATctGct33B.1.1.3260.005282
ORF1ab/nsp31375S1375FtCttTt33B.1.1.330.001263
ORF1ab/nsp31375S1375StcTtcC33B.1.1.70.000003
ORF1ab/nsp31375S1375TTctAct33B.1.1.70.000003
ORF1ab/nsp31375S1375FtCttTt33B.1.177.540.001819
ORF1ab/nsp31375S1375FtCttTt33B.1.177.730.001699
ORF1ab/nsp31375S1375delTCT---33B.1.2210.000213
ORF1ab/nsp31375S1375FtCttTt33B.1.2400.000647
ORF1ab/nsp31375S1375delTCT---33B.1.2580.0002
ORF1ab/nsp31375S1375FtCttTt33B.1.466.20.001174
ORF1ab/nsp31375S1375FtCttTt33B.1.4970.000944
ORF1ab/nsp31375S1375FtCttTt33B.1.4990.003151
ORF1ab/nsp31375S1375StcTtcA23B.1.5250.000226
ORF1ab/nsp31375S1375StcTtcC13B.1.5250.000113
ORF1ab/nsp31375S1375FtCttTt33B.1.5510.003871
ORF1ab/nsp31375S1375FtCttTt33B.1.5610.001191
ORF1ab/nsp31375S1375FtCttTt33B.1.5700.008824
ORF1ab/nsp31375S1375ATctGct33B.1.617.20.000011
ORF1ab/nsp31375S1375FtCttTt33C.37.10.007853
ORF1ab/nsp31375S1375FtCttTt33Q.80.000495
ORF1ab/nsp31375S1375delTCT---220.111111
ORF1ab/nsp31375S1375TTctAct120.055556
ORF1ab/nsp31375S1375ITCTATA120.055556
ORF1ab/nsp31375S1375TTcTAcA120.055556
ORF1ab/nsp31375S1375ITCtATt120.055556
ORF1ab/nsp31375S1375FtCttTt22A.2.50.000998
ORF1ab/nsp31375S1375FtCttTt22A.23.10.001408
ORF1ab/nsp31375S1375XtCTtAA22All0
ORF1ab/nsp31375S1375del2TCt--t22All0
ORF1ab/nsp31375S1375GTCTGGA12All0
ORF1ab/nsp31375S1375LtCTtTA12All0
ORF1ab/nsp31375S1375RTCTCGA12All0
ORF1ab/nsp31375S1375ITCtATt12All0
ORF1ab/nsp31375S1375ITCTATA12All0
ORF1ab/nsp31375S1375RTCtCGt12All0
ORF1ab/nsp31375S1375LTCtCTt12All0
ORF1ab/nsp31375S1375GTCtGGt12All0
ORF1ab/nsp31375S1375FtCttTt22AU.10.002532
ORF1ab/nsp31375S1375FtCttTt22AU.20.004843
ORF1ab/nsp31375S1375StcTtcC22AY.1030.000012
ORF1ab/nsp31375S1375CtCttGt22AY.1190.000071
ORF1ab/nsp31375S1375FtCttTt22AY.120.10.000642
ORF1ab/nsp31375S1375NTCtAAt22AY.1210.000271
ORF1ab/nsp31375S1375FtCttTt22AY.1210.000271
ORF1ab/nsp31375S1375FtCttTt22AY.140.000176
ORF1ab/nsp31375S1375NTCtAAt22AY.200.000078
ORF1ab/nsp31375S1375StcTtcC22AY.230.000139
ORF1ab/nsp31375S1375FtCttTt22AY.360.000296
ORF1ab/nsp31375S1375PTctCct22AY.420.00008
ORF1ab/nsp31375S1375delTCT---22AY.50.000041
ORF1ab/nsp31375S1375FtCttTt22AY.5.40.000553
ORF1ab/nsp31375S1375PTctCct22AY.540.000191
ORF1ab/nsp31375S1375StcTtcC22AY.570.001312
ORF1ab/nsp31375S1375StcTtcC22AY.60.000082
ORF1ab/nsp31375S1375FtCttTt22AY.70.000392
ORF1ab/nsp31375S1375FtCttTt22B0.000256
ORF1ab/nsp31375S1375del1tcTtc-22B.10.000018
ORF1ab/nsp31375S1375delTCT---22B.1.10.000036
ORF1ab/nsp31375S1375FtCttTt22B.1.1.140.034483
ORF1ab/nsp31375S1375YtCttAt22B.1.1.1410.004024
ORF1ab/nsp31375S1375FtCttTt22B.1.1.1760.000879
ORF1ab/nsp31375S1375FtCttTt22B.1.1.2040.006079
ORF1ab/nsp31375S1375FtCttTt22B.1.1.2220.000408
ORF1ab/nsp31375S1375FtCttTt22B.1.1.3060.000877
ORF1ab/nsp31375S1375FtCttTt22B.1.1.390.001019
ORF1ab/nsp31375S1375NTCtAAt22B.1.1.3980.006452
ORF1ab/nsp31375S1375RTCTCGA12B.1.1.70.000001
ORF1ab/nsp31375S1375GTCtGGt12B.1.1.70.000001
ORF1ab/nsp31375S1375RTCtCGt12B.1.1.70.000001
ORF1ab/nsp31375S1375GTCTGGA12B.1.1.70.000001
ORF1ab/nsp31375S1375FtCttTt22B.1.110.30.001437
ORF1ab/nsp31375S1375FtCttTt22B.1.1470.001512
ORF1ab/nsp31375S1375YtCttAt22B.1.1770.000026
ORF1ab/nsp31375S1375FtCttTt22B.1.177.100.001756
ORF1ab/nsp31375S1375delTCT---22B.1.177.180.00232
ORF1ab/nsp31375S1375FtCttTt22B.1.177.40.000422
ORF1ab/nsp31375S1375FtCttTt22B.1.177.650.001331
ORF1ab/nsp31375S1375StcTtcC22B.1.3510.000059
ORF1ab/nsp31375S1375FtCttTt22B.1.36.190.018519
ORF1ab/nsp31375S1375FtCttTt22B.1.36.360.001204
ORF1ab/nsp31375S1375FtCttTt22B.1.438.10.000215
ORF1ab/nsp31375S1375StcTtcC22B.1.5960.000174
ORF1ab/nsp31375S1375YtCttAt22B.1.6090.000959
ORF1ab/nsp31375S1375FtCttTt22B.1.617.10.000258
ORF1ab/nsp31375S1375PTctCct22B.1.617.20.000008
ORF1ab/nsp31375S1375YtCttAt22B.1.617.20.000008
ORF1ab/nsp31375S1375NTCtAAt22B.1.617.20.000008
ORF1ab/nsp31375S1375FtCttTt22B.1.6190.001742
ORF1ab/nsp31375S1375ATctGct22B.1.6210.000177
ORF1ab/nsp31375S1375FtCttTt22B.1.6270.00404
ORF1ab/nsp31375S1375FtCttTt22C.36.30.001134
ORF1ab/nsp31375S1375FtCttTt22P.1.120.000968
ORF1ab/nsp31375S1375YtCttAt22P.20.000373
ORF1ab/nsp31375S1375YtCttAt22Q.10.000253
ORF1ab/nsp31375S1375FtCttTt22Q.70.002222
ORF1ab/nsp31375S1375LtCTtTA110.055556
ORF1ab/nsp31375S1375StcTtcA110.055556
ORF1ab/nsp31375S1375FtCttTt110.055556
ORF1ab/nsp31375S1375YtCttAt110.055556
ORF1ab/nsp31375S1375KTCTAAA110.055556
ORF1ab/nsp31375S1375NTCtAAt110.055556
ORF1ab/nsp31375S1375XtCTtAA110.055556
ORF1ab/nsp31375S1375StcTtcC11A.10.000282
ORF1ab/nsp31375S1375delTCT---11A.280.002646
ORF1ab/nsp31375S1375StcTtcC11A.30.002096
ORF1ab/nsp31375S1375StcTtcC11AE.80.000489
ORF1ab/nsp31375S1375KTCTAAA11All0
ORF1ab/nsp31375S1375WtCTtGG11All0
ORF1ab/nsp31375S1375StcTtcC11AY.1000.000046
ORF1ab/nsp31375S1375PTctCct11AY.1000.000046
ORF1ab/nsp31375S1375delTCT---11AY.1000.000046
ORF1ab/nsp31375S1375FtCttTt11AY.1010.00049
ORF1ab/nsp31375S1375YtCttAt11AY.1020.000027
ORF1ab/nsp31375S1375NTCtAAt11AY.1020.000027
ORF1ab/nsp31375S1375PTctCct11AY.1030.000006
ORF1ab/nsp31375S1375FtCttTt11AY.1050.000643
ORF1ab/nsp31375S1375FtCttTt11AY.1080.001103
ORF1ab/nsp31375S1375FtCttTt11AY.1090.00074
ORF1ab/nsp31375S1375FtCttTt11AY.1100.000113
ORF1ab/nsp31375S1375FtCttTt11AY.1130.000142
ORF1ab/nsp31375S1375FtCttTt11AY.1140.000231
ORF1ab/nsp31375S1375FtCttTt11AY.1180.000063
ORF1ab/nsp31375S1375PTctCct11AY.1190.000035
ORF1ab/nsp31375S1375CtCttGt11AY.140.000088
ORF1ab/nsp31375S1375FtCttTt11AY.160.00038
ORF1ab/nsp31375S1375FtCttTt11AY.16.10.00047
ORF1ab/nsp31375S1375delTCT---11AY.190.00114
ORF1ab/nsp31375S1375ATctGct11AY.230.00007
ORF1ab/nsp31375S1375StcTtcC11AY.260.000028
ORF1ab/nsp31375S1375StcTtcC11AY.290.000016
ORF1ab/nsp31375S1375ATctGct11AY.290.000016
ORF1ab/nsp31375S1375PTctCct11AY.30.00001
ORF1ab/nsp31375S1375ATctGct11AY.30.00001
ORF1ab/nsp31375S1375FtCttTt11AY.3.10.000085
ORF1ab/nsp31375S1375delTCT---11AY.360.000148
ORF1ab/nsp31375S1375FtCttTt11AY.370.000316
ORF1ab/nsp31375S1375ATctGct11AY.390.000025
ORF1ab/nsp31375S1375delTCT---11AY.390.000025
ORF1ab/nsp31375S1375PTctCct11AY.390.000025
ORF1ab/nsp31375S1375ATctGct11AY.40.000002
ORF1ab/nsp31375S1375del2TCt--t11AY.40.000002
ORF1ab/nsp31375S1375TTctAct11AY.4.20.000022
ORF1ab/nsp31375S1375FtCttTt11AY.4.40.000409
ORF1ab/nsp31375S1375FtCttTt11AY.400.000964
ORF1ab/nsp31375S1375PTctCct11AY.430.000004
ORF1ab/nsp31375S1375ATctGct11AY.430.000004
ORF1ab/nsp31375S1375NTCtAAt11AY.440.000006
ORF1ab/nsp31375S1375delTCT---11AY.46.20.000635
ORF1ab/nsp31375S1375YtCttAt11AY.46.30.000934
ORF1ab/nsp31375S1375YtCttAt11AY.46.60.000072
ORF1ab/nsp31375S1375ATctGct11AY.46.60.000072
ORF1ab/nsp31375S1375NTCtAAt11AY.46.60.000072
ORF1ab/nsp31375S1375FtCttTt11AY.46.60.000072
ORF1ab/nsp31375S1375ATctGct11AY.470.000031
ORF1ab/nsp31375S1375delTCT---11AY.520.000814
ORF1ab/nsp31375S1375PTctCct11AY.530.000288
ORF1ab/nsp31375S1375FtCttTt11AY.590.00053
ORF1ab/nsp31375S1375StcTtcC11AY.590.00053
ORF1ab/nsp31375S1375delTCT---11AY.600.000938
ORF1ab/nsp31375S1375delTCT---11AY.650.000533
ORF1ab/nsp31375S1375FtCttTt11AY.680.000274
ORF1ab/nsp31375S1375FtCttTt11AY.690.000187
ORF1ab/nsp31375S1375FtCttTt11AY.7.10.000113
ORF1ab/nsp31375S1375FtCttTt11AY.710.000475
ORF1ab/nsp31375S1375delTCT---11AY.730.000665
ORF1ab/nsp31375S1375ATctGct11AY.750.000056
ORF1ab/nsp31375S1375delTCT---11AY.750.000056
ORF1ab/nsp31375S1375NTCtAAt11AY.820.001357
ORF1ab/nsp31375S1375FtCttTt11AY.820.001357
ORF1ab/nsp31375S1375StcTtcC11AY.840.000437
ORF1ab/nsp31375S1375FtCttTt11AY.9.20.000037
ORF1ab/nsp31375S1375delTCT---11AY.9.20.000037
ORF1ab/nsp31375S1375FtCttTt11AY.930.000273
ORF1ab/nsp31375S1375FtCttTt11AY.940.000443
ORF1ab/nsp31375S1375PTctCct11AY.98.10.000048
ORF1ab/nsp31375S1375YtCttAt11B.10.000009
ORF1ab/nsp31375S1375PTctCct11B.10.000009
ORF1ab/nsp31375S1375PTctCct11B.1.10.000018
ORF1ab/nsp31375S1375FtCttTt11B.1.1.1590.004673
ORF1ab/nsp31375S1375FtCttTt11B.1.1.1740.003378
ORF1ab/nsp31375S1375FtCttTt11B.1.1.1960.005714
ORF1ab/nsp31375S1375FtCttTt11B.1.1.2280.003049
ORF1ab/nsp31375S1375FtCttTt11B.1.1.250.000569
ORF1ab/nsp31375S1375FtCttTt11B.1.1.2630.001558
ORF1ab/nsp31375S1375CtCttGt11B.1.1.2790.001121
ORF1ab/nsp31375S1375TTctAct11B.1.1.280.000311
ORF1ab/nsp31375S1375FtCttTt11B.1.1.2820.011628
ORF1ab/nsp31375S1375FtCttTt11B.1.1.2990.012195
ORF1ab/nsp31375S1375TTctAct11B.1.1.3060.000438
ORF1ab/nsp31375S1375delTCT---11B.1.1.3110.000358
ORF1ab/nsp31375S1375delTCT---11B.1.1.3120.001912
ORF1ab/nsp31375S1375ATctGct11B.1.1.3400.045455
ORF1ab/nsp31375S1375LTCtCTt11B.1.1.3470.018182
ORF1ab/nsp31375S1375delTCT---11B.1.1.3480.000796
ORF1ab/nsp31375S1375delTCT---11B.1.1.3610.045455
ORF1ab/nsp31375S1375FtCttTt11B.1.1.3720.000689
ORF1ab/nsp31375S1375FtCttTt11B.1.1.3890.006061
ORF1ab/nsp31375S1375StcTtcC11B.1.1.3890.006061
ORF1ab/nsp31375S1375FtCttTt11B.1.1.4010.066667
ORF1ab/nsp31375S1375FtCttTt11B.1.1.4090.002833
ORF1ab/nsp31375S1375delTCT---11B.1.1.4090.002833
ORF1ab/nsp31375S1375del1tcTtc-11B.1.1.4480.002033
ORF1ab/nsp31375S1375FtCttTt11B.1.1.4490.022727
ORF1ab/nsp31375S1375FtCttTt11B.1.1.500.000679
ORF1ab/nsp31375S1375StcTtcC11B.1.1.500.000679
ORF1ab/nsp31375S1375XtCTtAA11B.1.1.70.000001
ORF1ab/nsp31375S1375del1tcTtc-11B.1.1.70.000001
ORF1ab/nsp31375S1375del2TCt--t11B.1.1.70.000001
ORF1ab/nsp31375S1375FtCttTt11B.1.1110.001175
ORF1ab/nsp31375S1375FtCttTt11B.1.1430.021277
ORF1ab/nsp31375S1375delTCT---11B.1.1600.000031
ORF1ab/nsp31375S1375delTCT---11B.1.1610.017241
ORF1ab/nsp31375S1375FtCttTt11B.1.1700.00431
ORF1ab/nsp31375S1375StcTtcC11B.1.1770.000013
ORF1ab/nsp31375S1375delTCT---11B.1.177.150.000631
ORF1ab/nsp31375S1375delTCT---11B.1.177.160.000664
ORF1ab/nsp31375S1375FtCttTt11B.1.177.180.00116
ORF1ab/nsp31375S1375FtCttTt11B.1.177.210.000076
ORF1ab/nsp31375S1375FtCttTt11B.1.177.260.006993
ORF1ab/nsp31375S1375FtCttTt11B.1.177.30.007634
ORF1ab/nsp31375S1375StcTtcC11B.1.177.40.000211
ORF1ab/nsp31375S1375delTCT---11B.1.177.40.000211
ORF1ab/nsp31375S1375FtCttTt11B.1.177.430.001477
ORF1ab/nsp31375S1375delTCT---11B.1.177.540.000606
ORF1ab/nsp31375S1375delTCT---11B.1.177.560.000668
ORF1ab/nsp31375S1375delTCT---11B.1.177.630.002703
ORF1ab/nsp31375S1375del1tcTtc-11B.1.177.70.000165
ORF1ab/nsp31375S1375delTCT---11B.1.177.70.000165
ORF1ab/nsp31375S1375FtCttTt11B.1.177.750.001041
ORF1ab/nsp31375S1375FtCttTt11B.1.177.770.000726
ORF1ab/nsp31375S1375FtCttTt11B.1.177.810.000189
ORF1ab/nsp31375S1375delTCT---11B.1.177.810.000189
ORF1ab/nsp31375S1375FtCttTt11B.1.177.840.006667
ORF1ab/nsp31375S1375FtCttTt11B.1.177.850.005435
ORF1ab/nsp31375S1375FtCttTt11B.1.177.860.000183
ORF1ab/nsp31375S1375delTCT---11B.1.177.870.000728
ORF1ab/nsp31375S1375delTCT---11B.1.177.90.001332
ORF1ab/nsp31375S1375FtCttTt11B.1.1790.003759
ORF1ab/nsp31375S1375StcTtcC11B.1.1990.004132
ORF1ab/nsp31375S1375delTCT---11B.1.20.000009
ORF1ab/nsp31375S1375TTctAct11B.1.20.000009
ORF1ab/nsp31375S1375TTctAct11B.1.2010.005682
ORF1ab/nsp31375S1375FtCttTt11B.1.2140.003663
ORF1ab/nsp31375S1375NTCtAAt11B.1.2210.000071
ORF1ab/nsp31375S1375FtCttTt11B.1.2340.000132
ORF1ab/nsp31375S1375StcTtcC11B.1.2430.00007
ORF1ab/nsp31375S1375FtCttTt11B.1.2520.006623
ORF1ab/nsp31375S1375ATctGct11B.1.2580.000067
ORF1ab/nsp31375S1375FtCttTt11B.1.258.110.000396
ORF1ab/nsp31375S1375delTCT---11B.1.258.160.001637
ORF1ab/nsp31375S1375FtCttTt11B.1.258.170.000104
ORF1ab/nsp31375S1375FtCttTt11B.1.3110.000275
ORF1ab/nsp31375S1375YtCttAt11B.1.3300.028571
ORF1ab/nsp31375S1375FtCttTt11B.1.3490.000715
ORF1ab/nsp31375S1375StcTtcC11B.1.351.20.000303
ORF1ab/nsp31375S1375YtCttAt11B.1.351.20.000303
ORF1ab/nsp31375S1375FtCttTt11B.1.351.20.000303
ORF1ab/nsp31375S1375FtCttTt11B.1.351.30.000876
ORF1ab/nsp31375S1375PTctCct11B.1.360.000146
ORF1ab/nsp31375S1375PTctCct11B.1.36.160.001425
ORF1ab/nsp31375S1375delTCT---11B.1.36.170.000494
ORF1ab/nsp31375S1375FtCttTt11B.1.3690.000285
ORF1ab/nsp31375S1375del1tcTtc-11B.1.3690.000285
ORF1ab/nsp31375S1375FtCttTt11B.1.3810.007812
ORF1ab/nsp31375S1375FtCttTt11B.1.3980.002976
ORF1ab/nsp31375S1375FtCttTt11B.1.4050.012346
ORF1ab/nsp31375S1375FtCttTt11B.1.4080.00369
ORF1ab/nsp31375S1375FtCttTt11B.1.415.10.007576
ORF1ab/nsp31375S1375FtCttTt11B.1.4260.001009
ORF1ab/nsp31375S1375ATctGct11B.1.4270.00005
ORF1ab/nsp31375S1375NTCtAAt11B.1.4290.000024
ORF1ab/nsp31375S1375ATctGct11B.1.4290.000024
ORF1ab/nsp31375S1375StcTtcC11B.1.4290.000024
ORF1ab/nsp31375S1375StcTtcC11B.1.438.10.000107
ORF1ab/nsp31375S1375FtCttTt11B.1.4560.003268
ORF1ab/nsp31375S1375StcTtcG11B.1.466.20.000391
ORF1ab/nsp31375S1375FtCttTt11B.1.4680.005714
ORF1ab/nsp31375S1375FtCttTt11B.1.4700.001404
ORF1ab/nsp31375S1375StcTtcC11B.1.4730.019231
ORF1ab/nsp31375S1375FtCttTt11B.1.5030.002488
ORF1ab/nsp31375S1375delTCT---11B.1.5170.000427
ORF1ab/nsp31375S1375delTCT---11B.1.5250.000113
ORF1ab/nsp31375S1375YtCttAt11B.1.5250.000113
ORF1ab/nsp31375S1375YtCttAt11B.1.5260.000024
ORF1ab/nsp31375S1375NTCtAAt11B.1.5260.000024
ORF1ab/nsp31375S1375FtCttTt11B.1.575.10.002439
ORF1ab/nsp31375S1375FtCttTt11B.1.5760.000907
ORF1ab/nsp31375S1375FtCttTt11B.1.5850.027778
ORF1ab/nsp31375S1375TTctAct11B.1.5950.000261
ORF1ab/nsp31375S1375delTCT---11B.1.6210.000089
ORF1ab/nsp31375S1375delTCT---11B.1.6300.005236
ORF1ab/nsp31375S1375ATctGct11B.1.6370.000073
ORF1ab/nsp31375S1375FtCttTt11B.280.003279
ORF1ab/nsp31375S1375delTCT---11B.4.40.018868
ORF1ab/nsp31375S1375delTCT---11B.400.000364
ORF1ab/nsp31375S1375FtCttTt11B.550.00295
ORF1ab/nsp31375S1375WtCTtGG11B.60.00091
ORF1ab/nsp31375S1375StcTtcC11C.160.00106
ORF1ab/nsp31375S1375delTCT---11C.350.000774
ORF1ab/nsp31375S1375del1Tct-ct11C.360.000911
ORF1ab/nsp31375S1375StcTtcG11C.36.30.000567
ORF1ab/nsp31375S1375StcTtcC11C.370.000116
ORF1ab/nsp31375S1375YtCttAt11C.40.01
ORF1ab/nsp31375S1375ATctGct11D.20.000075
ORF1ab/nsp31375S1375FtCttTt11N.40.004255
ORF1ab/nsp31375S1375FtCttTt11N.50.001767
ORF1ab/nsp31375S1375delTCT---11P.10.000016
ORF1ab/nsp31375S1375StcTtcC11P.10.000016
ORF1ab/nsp31375S1375FtCttTt11P.1.160.000374
ORF1ab/nsp31375S1375FtCttTt11P.1.170.000162
ORF1ab/nsp31375S1375FtCttTt11P.1.17.10.000875
ORF1ab/nsp31375S1375FtCttTt11P.1.20.001156
ORF1ab/nsp31375S1375FtCttTt11P.1.80.004785
ORF1ab/nsp31375S1375FtCttTt11P.20.000187
ORF1ab/nsp31375S1375NTCtAAt11Q.10.000126
ORF1ab/nsp31375S1375FtCttTt11Q.40.000455
ORF1ab/nsp31375S1375delTCT---11Q.80.000165
ORF1ab/nsp31375S1375NTCtAAt11Q.80.000165