CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1374 | A1374V | A2192V | nonsyn | gCa | gTa | 2861 | 2859 | 0.999301 | 6839-6841 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2859 | 2861 | All | 0.000547 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 901 | 901 | B.1.617.2 | 0.003393 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 536 | 536 | AY.97 | 0.911565 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 181 | 181 | B.1.1.7 | 0.000162 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 140 | 140 | AY.4.2 | 0.003036 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 129 | 129 | AY.5 | 0.002664 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 109 | 109 | AY.20 | 0.004236 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 88 | 88 | AY.25 | 0.000529 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 78 | 78 | AY.39 | 0.001927 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 63 | 63 | AY.4 | 0.000098 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 51 | 51 | AY.43 | 0.000226 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 51 | 51 | AY.44 | 0.00031 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 48 | 48 | AY.103 | 0.000298 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 31 | 31 | AY.3 | 0.000308 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 23 | 23 | AY.120 | 0.000855 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 22 | 22 | AY.29 | 0.000347 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 17 | 17 | AD.2 | 0.003722 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 16 | 16 | AY.73 | 0.010645 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 14 | 14 | AY.34 | 0.001358 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 13 | 13 | AY.99.2 | 0.001198 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 8 | 8 | B.1.1.412 | 0.061069 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 5 | 5 | AY.86 | 0.004149 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 5 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 5 | 5 | B.1.221.1 | 0.014535 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 4 | 4 | AY.64 | 0.002381 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.1.83 | 0.00542 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.1.99 | 0.047619 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.347 | 0.018182 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1374 | A1374V | gCa | gTa | 1 | 1 | P.1.17 | 0.000162 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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