CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1374

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31374A1374VA2192VnonsyngCagTa286128590.9993016839-6841
ORF1ab/nsp31374A1374VA2192VnonsyngCAgTT286110.0003495286839-6841
ORF1ab/nsp31374A1374VA2192VnonsyngCAgTC286110.0003495286839-6841
ORF1ab/nsp31374A1374AA2192AsyngcAgcG4003390.84756839-6841
ORF1ab/nsp31374A1374AA2192AsyngcAgcT400460.1156839-6841
ORF1ab/nsp31374A1374AA2192AsyngcAgcC400150.03756839-6841
ORF1ab/nsp31374A1374delA2192deldelGCA---14314316839-6841
ORF1ab/nsp31374A1374TA2192TnonsynGcaAca82800.975616839-6841
ORF1ab/nsp31374A1374TA2192TnonsynGcAAcT8220.02439026839-6841
ORF1ab/nsp31374A1374EA2192EnonsyngCagAa606016839-6841
ORF1ab/nsp31374A1374SA2192SnonsynGcaTca48450.93756839-6841
ORF1ab/nsp31374A1374SA2192SnonsynGcATcC4810.02083336839-6841
ORF1ab/nsp31374A1374SA2192SnonsynGcATcT4810.02083336839-6841
ORF1ab/nsp31374A1374SA2192SnonsynGCAAGC4810.02083336839-6841
ORF1ab/nsp31374A1374del2A2192del2delGCa--a760.8571436839-6841
ORF1ab/nsp31374A1374del2A2192del2delGCAA--710.1428576839-6841
ORF1ab/nsp31374A1374del1A2192del1delgcAgc-640.6666676839-6841
ORF1ab/nsp31374A1374del1A2192del1delGca-ca620.3333336839-6841
ORF1ab/nsp31374A1374IA2192InonsynGCaATa530.66839-6841
ORF1ab/nsp31374A1374IA2192InonsynGCAATT510.26839-6841
ORF1ab/nsp31374A1374IA2192InonsynGCAATC510.26839-6841
ORF1ab/nsp31374A1374PA2192PnonsynGcaCca4416839-6841
ORF1ab/nsp31374A1374GA2192GnonsyngCagGa420.56839-6841
ORF1ab/nsp31374A1374GA2192GnonsyngCAgGC410.256839-6841
ORF1ab/nsp31374A1374GA2192GnonsyngCAgGT410.256839-6841
ORF1ab/nsp31374A1374LA2192LnonsynGCaTTa2216839-6841
ORF1ab/nsp31374A1374XA2192XnonsynGCaTAa1116839-6841
ORF1ab/nsp31374A1374DA2192DnonsyngCAgAC1116839-6841
ORF1ab/nsp31374A1374HA2192HnonsynGCACAT1116839-6841
ORF1ab/nsp31374A1374KA2192KnonsynGCaAAa1116839-6841
ORF1ab/nsp31374A1374FA2192FnonsynGCATTT1116839-6841
ORF1ab/nsp31374A1374YA2192YnonsynGCATAC1116839-6841

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31374A1374VgCagTa28592861All0.000547
ORF1ab/nsp31374A1374VgCAgTT12861All0
ORF1ab/nsp31374A1374VgCAgTC12861All0
ORF1ab/nsp31374A1374VgCagTa901901B.1.617.20.003393
ORF1ab/nsp31374A1374VgCagTa536536AY.970.911565
ORF1ab/nsp31374A1374AgcAgcG339400All0.000065
ORF1ab/nsp31374A1374AgcAgcT46400All0.000009
ORF1ab/nsp31374A1374AgcAgcC15400All0.000003
ORF1ab/nsp31374A1374VgCagTa181181B.1.1.70.000162
ORF1ab/nsp31374A1374AgcAgcG143144B.1.10.002594
ORF1ab/nsp31374A1374AgcAgcC1144B.1.10.000018
ORF1ab/nsp31374A1374delGCA---143143All0.000027
ORF1ab/nsp31374A1374VgCagTa140140AY.4.20.003036
ORF1ab/nsp31374A1374VgCagTa129129AY.50.002664
ORF1ab/nsp31374A1374VgCagTa109109AY.200.004236
ORF1ab/nsp31374A1374VgCagTa8888AY.250.000529
ORF1ab/nsp31374A1374TGcaAca8082All0.000015
ORF1ab/nsp31374A1374TGcAAcT282All0
ORF1ab/nsp31374A1374VgCagTa7878AY.390.001927
ORF1ab/nsp31374A1374VgCagTa6363AY.40.000098
ORF1ab/nsp31374A1374EgCagAa6060All0.000011
ORF1ab/nsp31374A1374delGCA---5555B.1.1.70.000049
ORF1ab/nsp31374A1374VgCagTa5151AY.430.000226
ORF1ab/nsp31374A1374VgCagTa5151AY.440.00031
ORF1ab/nsp31374A1374SGcaTca4548All0.000009
ORF1ab/nsp31374A1374SGcATcT148All0
ORF1ab/nsp31374A1374SGcATcC148All0
ORF1ab/nsp31374A1374SGCAAGC148All0
ORF1ab/nsp31374A1374VgCagTa4848AY.1030.000298
ORF1ab/nsp31374A1374EgCagAa4343AY.40.000067
ORF1ab/nsp31374A1374AgcAgcG3333B.1.1.540.099698
ORF1ab/nsp31374A1374VgCagTa3131AY.30.000308
ORF1ab/nsp31374A1374TGcaAca2424AY.40.000037
ORF1ab/nsp31374A1374VgCagTa2323AY.1200.000855
ORF1ab/nsp31374A1374VgCagTa2222AY.290.000347
ORF1ab/nsp31374A1374AgcAgcG2121AY.1030.00013
ORF1ab/nsp31374A1374SGcaTca1921B.1.1.70.000017
ORF1ab/nsp31374A1374SGcATcT121B.1.1.70.000001
ORF1ab/nsp31374A1374SGCAAGC121B.1.1.70.000001
ORF1ab/nsp31374A1374AgcAgcG1419B.1.1.70.000013
ORF1ab/nsp31374A1374AgcAgcC319B.1.1.70.000003
ORF1ab/nsp31374A1374AgcAgcT219B.1.1.70.000002
ORF1ab/nsp31374A1374VgCagTa1717AD.20.003722
ORF1ab/nsp31374A1374VgCagTa1717AY.1020.000451
ORF1ab/nsp31374A1374VgCagTa1717AY.260.000481
ORF1ab/nsp31374A1374AgcAgcT1517AY.260.000425
ORF1ab/nsp31374A1374AgcAgcG217AY.260.000057
ORF1ab/nsp31374A1374AgcAgcG1616AY.440.000097
ORF1ab/nsp31374A1374VgCagTa1616AY.730.010645
ORF1ab/nsp31374A1374VgCagTa1515B.1.1770.000198
ORF1ab/nsp31374A1374VgCagTa1414AY.340.001358
ORF1ab/nsp31374A1374VgCagTa1414B.1.10.000254
ORF1ab/nsp31374A1374AgcAgcG1414B.1.617.20.000053
ORF1ab/nsp31374A1374VgCagTa1414P.10.000221
ORF1ab/nsp31374A1374delGCA---1313AY.40.00002
ORF1ab/nsp31374A1374VgCagTa1313AY.99.20.001198
ORF1ab/nsp31374A1374VgCagTa1111B.10.000101
ORF1ab/nsp31374A1374VgCagTa1111B.1.1.5190.000437
ORF1ab/nsp31374A1374VgCagTa1111B.1.20.000097
ORF1ab/nsp31374A1374AgcAgcG99AY.250.000054
ORF1ab/nsp31374A1374AgcAgcG99AY.430.00004
ORF1ab/nsp31374A1374AgcAgcT99B.1.1.10.00294
ORF1ab/nsp31374A1374delGCA---99B.1.1770.000119
ORF1ab/nsp31374A1374VgCagTa88B.1.1.4120.061069
ORF1ab/nsp31374A1374del2GCa--a67All0.000001
ORF1ab/nsp31374A1374del2GCAA--17All0
ORF1ab/nsp31374A1374AgcAgcG67AY.40.000009
ORF1ab/nsp31374A1374AgcAgcT17AY.40.000002
ORF1ab/nsp31374A1374AgcAgcT57B.10.000046
ORF1ab/nsp31374A1374AgcAgcG27B.10.000018
ORF1ab/nsp31374A1374AgcAgcG77B.1.1.390.003568
ORF1ab/nsp31374A1374TGcaAca67B.1.1.70.000005
ORF1ab/nsp31374A1374TGcAAcT17B.1.1.70.000001
ORF1ab/nsp31374A1374VgCagTa77B.1.2340.000924
ORF1ab/nsp31374A1374VgCagTa77B.1.4290.000165
ORF1ab/nsp31374A1374del1gcAgc-46All0.000001
ORF1ab/nsp31374A1374del1Gca-ca26All0
ORF1ab/nsp31374A1374VgCagTa66AY.420.000241
ORF1ab/nsp31374A1374VgCagTa66AY.470.000187
ORF1ab/nsp31374A1374del2GCa--a66B.1.1.70.000005
ORF1ab/nsp31374A1374AgcAgcG66B.1.5760.00544
ORF1ab/nsp31374A1374SGcaTca66B.1.617.20.000023
ORF1ab/nsp31374A1374TGcaAca56B.1.617.20.000019
ORF1ab/nsp31374A1374TGcAAcT16B.1.617.20.000004
ORF1ab/nsp31374A1374VgCagTa66D.20.00045
ORF1ab/nsp31374A1374IGCaATa35All0.000001
ORF1ab/nsp31374A1374IGCAATT15All0
ORF1ab/nsp31374A1374IGCAATC15All0
ORF1ab/nsp31374A1374AgcAgcG55AY.1020.000133
ORF1ab/nsp31374A1374VgCagTa55AY.140.00044
ORF1ab/nsp31374A1374delGCA---55AY.4.50.000537
ORF1ab/nsp31374A1374VgCagTa55AY.4.50.000537
ORF1ab/nsp31374A1374TGcaAca55AY.420.000201
ORF1ab/nsp31374A1374VgCagTa55AY.860.004149
ORF1ab/nsp31374A1374VgCagTa55B.1.1600.000156
ORF1ab/nsp31374A1374VgCagTa55B.1.177.860.000917
ORF1ab/nsp31374A1374AgcAgcG55B.1.20.000044
ORF1ab/nsp31374A1374TGcaAca55B.1.20.000044
ORF1ab/nsp31374A1374VgCagTa35B.1.2210.000213
ORF1ab/nsp31374A1374VgCAgTC15B.1.2210.000071
ORF1ab/nsp31374A1374VgCAgTT15B.1.2210.000071
ORF1ab/nsp31374A1374VgCagTa55B.1.221.10.014535
ORF1ab/nsp31374A1374VgCagTa55B.1.4270.000252
ORF1ab/nsp31374A1374VgCagTa55P.20.000933
ORF1ab/nsp31374A1374PGcaCca44All0.000001
ORF1ab/nsp31374A1374GgCagGa24All0
ORF1ab/nsp31374A1374GgCAgGC14All0
ORF1ab/nsp31374A1374GgCAgGT14All0
ORF1ab/nsp31374A1374VgCagTa44AY.1170.000338
ORF1ab/nsp31374A1374VgCagTa44AY.1190.000141
ORF1ab/nsp31374A1374SGcaTca44AY.250.000024
ORF1ab/nsp31374A1374SGcaTca44AY.40.000006
ORF1ab/nsp31374A1374TGcaAca44AY.440.000024
ORF1ab/nsp31374A1374VgCagTa44AY.450.000487
ORF1ab/nsp31374A1374VgCagTa44AY.460.000416
ORF1ab/nsp31374A1374VgCagTa44AY.640.002381
ORF1ab/nsp31374A1374VgCagTa44AY.710.0019
ORF1ab/nsp31374A1374AgcAgcG34AY.750.000168
ORF1ab/nsp31374A1374AgcAgcT14AY.750.000056
ORF1ab/nsp31374A1374VgCagTa44AY.9.20.000147
ORF1ab/nsp31374A1374VgCagTa44B.1.360.000584
ORF1ab/nsp31374A1374AgcAgcG44B.1.5090.003463
ORF1ab/nsp31374A1374EgCagAa44B.1.5250.000453
ORF1ab/nsp31374A1374TGcaAca330.166667
ORF1ab/nsp31374A1374VgCagTa33AY.1130.000427
ORF1ab/nsp31374A1374VgCagTa33AY.120.10.000963
ORF1ab/nsp31374A1374AgcAgcG33AY.3.10.000256
ORF1ab/nsp31374A1374VgCagTa33AY.360.000445
ORF1ab/nsp31374A1374delGCA---33AY.430.000013
ORF1ab/nsp31374A1374VgCagTa33AY.5.40.00083
ORF1ab/nsp31374A1374VgCagTa33AY.610.000314
ORF1ab/nsp31374A1374VgCagTa33AY.750.000168
ORF1ab/nsp31374A1374AgcAgcG33AY.950.002283
ORF1ab/nsp31374A1374delGCA---33B.10.000027
ORF1ab/nsp31374A1374SGcaTca33B.1.1.4640.004418
ORF1ab/nsp31374A1374AgcAgcG33B.1.1.5210.016043
ORF1ab/nsp31374A1374EgCagAa33B.1.1.70.000003
ORF1ab/nsp31374A1374TGcaAca33B.1.1770.00004
ORF1ab/nsp31374A1374GgCagGa13B.1.2210.000071
ORF1ab/nsp31374A1374GgCAgGC13B.1.2210.000071
ORF1ab/nsp31374A1374GgCAgGT13B.1.2210.000071
ORF1ab/nsp31374A1374delGCA---33B.1.2580.0002
ORF1ab/nsp31374A1374VgCagTa33B.1.258.170.000312
ORF1ab/nsp31374A1374VgCagTa33B.1.5250.000339
ORF1ab/nsp31374A1374VgCagTa33B.1.5260.000071
ORF1ab/nsp31374A1374AgcAgcC33B.1.5960.000261
ORF1ab/nsp31374A1374delGCA---33B.1.617.20.000011
ORF1ab/nsp31374A1374VgCagTa33B.1.6210.000266
ORF1ab/nsp31374A1374delGCA---220.111111
ORF1ab/nsp31374A1374EgCagAa220.111111
ORF1ab/nsp31374A1374SGcaTca120.055556
ORF1ab/nsp31374A1374SGcATcC120.055556
ORF1ab/nsp31374A1374LGCaTTa22All0
ORF1ab/nsp31374A1374AgcAgcG22AY.10.000791
ORF1ab/nsp31374A1374VgCagTa22AY.1000.000092
ORF1ab/nsp31374A1374VgCagTa22AY.1180.000125
ORF1ab/nsp31374A1374VgCagTa22AY.160.000759
ORF1ab/nsp31374A1374EgCagAa22AY.200.000078
ORF1ab/nsp31374A1374AgcAgcG12AY.390.000025
ORF1ab/nsp31374A1374AgcAgcT12AY.390.000025
ORF1ab/nsp31374A1374VgCagTa22AY.39.10.000079
ORF1ab/nsp31374A1374TGcaAca22AY.4.20.000043
ORF1ab/nsp31374A1374AgcAgcT12AY.4.20.000022
ORF1ab/nsp31374A1374AgcAgcG12AY.4.20.000022
ORF1ab/nsp31374A1374TGcaAca22AY.430.000009
ORF1ab/nsp31374A1374delGCA---22AY.50.000041
ORF1ab/nsp31374A1374TGcaAca22AY.620.000871
ORF1ab/nsp31374A1374VgCagTa22AY.7.20.001119
ORF1ab/nsp31374A1374VgCagTa22AY.700.000417
ORF1ab/nsp31374A1374TGcaAca22AY.880.001768
ORF1ab/nsp31374A1374VgCagTa22AY.90.000135
ORF1ab/nsp31374A1374VgCagTa22AY.980.000158
ORF1ab/nsp31374A1374EgCagAa22B.10.000018
ORF1ab/nsp31374A1374delGCA---22B.1.10.000036
ORF1ab/nsp31374A1374VgCagTa22B.1.1.1980.002937
ORF1ab/nsp31374A1374VgCagTa22B.1.1.2140.000111
ORF1ab/nsp31374A1374TGcaAca22B.1.1.3060.000877
ORF1ab/nsp31374A1374VgCagTa22B.1.1.390.001019
ORF1ab/nsp31374A1374AgcAgcG22B.1.1.4480.004065
ORF1ab/nsp31374A1374IGCAATT12B.1.1.70.000001
ORF1ab/nsp31374A1374IGCaATa12B.1.1.70.000001
ORF1ab/nsp31374A1374VgCagTa22B.1.1.830.00542
ORF1ab/nsp31374A1374VgCagTa22B.1.1.990.047619
ORF1ab/nsp31374A1374AgcAgcG22B.1.1770.000026
ORF1ab/nsp31374A1374delGCA---22B.1.177.180.00232
ORF1ab/nsp31374A1374VgCagTa22B.1.177.600.000437
ORF1ab/nsp31374A1374AgcAgcG22B.1.177.830.002963
ORF1ab/nsp31374A1374delGCA---22B.1.2210.000142
ORF1ab/nsp31374A1374AgcAgcC12B.1.2210.000071
ORF1ab/nsp31374A1374AgcAgcT12B.1.2210.000071
ORF1ab/nsp31374A1374AgcAgcC22B.1.2430.000139
ORF1ab/nsp31374A1374AgcAgcG22B.1.2580.000133
ORF1ab/nsp31374A1374VgCagTa22B.1.3510.000059
ORF1ab/nsp31374A1374VgCagTa22B.1.36.290.001035
ORF1ab/nsp31374A1374VgCagTa22B.1.4000.000858
ORF1ab/nsp31374A1374AgcAgcG22B.1.4290.000047
ORF1ab/nsp31374A1374VgCagTa22B.1.5270.007407
ORF1ab/nsp31374A1374del1gcAgc-22B.1.617.20.000008
ORF1ab/nsp31374A1374VgCagTa22C.370.000232
ORF1ab/nsp31374A1374AgcAgcT22C.370.000232
ORF1ab/nsp31374A1374AgcAgcT22S.10.009901
ORF1ab/nsp31374A1374AgcAgcC110.055556
ORF1ab/nsp31374A1374XGCaTAa110.055556
ORF1ab/nsp31374A1374DgCAgAC110.055556
ORF1ab/nsp31374A1374YGCATAC110.055556
ORF1ab/nsp31374A1374VgCagTa11A.20.000662
ORF1ab/nsp31374A1374SGcaTca11A.20.000662
ORF1ab/nsp31374A1374IGCAATC11A.210.00277
ORF1ab/nsp31374A1374delGCA---11A.280.002646
ORF1ab/nsp31374A1374YGCATAC11All0
ORF1ab/nsp31374A1374XGCaTAa11All0
ORF1ab/nsp31374A1374DgCAgAC11All0
ORF1ab/nsp31374A1374FGCATTT11All0
ORF1ab/nsp31374A1374HGCACAT11All0
ORF1ab/nsp31374A1374KGCaAAa11All0
ORF1ab/nsp31374A1374AgcAgcT11AY.100.00053
ORF1ab/nsp31374A1374delGCA---11AY.1000.000046
ORF1ab/nsp31374A1374VgCagTa11AY.1010.00049
ORF1ab/nsp31374A1374EgCagAa11AY.1030.000006
ORF1ab/nsp31374A1374VgCagTa11AY.1080.001103
ORF1ab/nsp31374A1374VgCagTa11AY.1110.000183
ORF1ab/nsp31374A1374AgcAgcT11AY.1130.000142
ORF1ab/nsp31374A1374VgCagTa11AY.1160.000287
ORF1ab/nsp31374A1374AgcAgcG11AY.1170.000085
ORF1ab/nsp31374A1374AgcAgcC11AY.1200.000037
ORF1ab/nsp31374A1374VgCagTa11AY.16.10.00047
ORF1ab/nsp31374A1374delGCA---11AY.190.00114
ORF1ab/nsp31374A1374AgcAgcG11AY.200.000039
ORF1ab/nsp31374A1374TGcaAca11AY.200.000039
ORF1ab/nsp31374A1374VgCagTa11AY.230.00007
ORF1ab/nsp31374A1374TGcaAca11AY.260.000028
ORF1ab/nsp31374A1374VgCagTa11AY.29.10.000221
ORF1ab/nsp31374A1374AgcAgcT11AY.30.00001
ORF1ab/nsp31374A1374VgCagTa11AY.3.10.000085
ORF1ab/nsp31374A1374VgCagTa11AY.330.000067
ORF1ab/nsp31374A1374delGCA---11AY.360.000148
ORF1ab/nsp31374A1374VgCagTa11AY.370.000316
ORF1ab/nsp31374A1374delGCA---11AY.390.000025
ORF1ab/nsp31374A1374PGcaCca11AY.40.000002
ORF1ab/nsp31374A1374EgCagAa11AY.4.50.000107
ORF1ab/nsp31374A1374AgcAgcG11AY.460.000104
ORF1ab/nsp31374A1374delGCA---11AY.46.20.000635
ORF1ab/nsp31374A1374VgCagTa11AY.46.40.000165
ORF1ab/nsp31374A1374AgcAgcG11AY.46.60.000072
ORF1ab/nsp31374A1374AgcAgcG11AY.470.000031
ORF1ab/nsp31374A1374AgcAgcG11AY.50.000021
ORF1ab/nsp31374A1374delGCA---11AY.520.000814
ORF1ab/nsp31374A1374VgCagTa11AY.590.00053
ORF1ab/nsp31374A1374TGcaAca11AY.60.000041
ORF1ab/nsp31374A1374delGCA---11AY.600.000938
ORF1ab/nsp31374A1374delGCA---11AY.650.000533
ORF1ab/nsp31374A1374VgCagTa11AY.650.000533
ORF1ab/nsp31374A1374VgCagTa11AY.7.10.000113
ORF1ab/nsp31374A1374delGCA---11AY.730.000665
ORF1ab/nsp31374A1374VgCagTa11AY.740.000116
ORF1ab/nsp31374A1374delGCA---11AY.750.000056
ORF1ab/nsp31374A1374VgCagTa11AY.770.001127
ORF1ab/nsp31374A1374VgCagTa11AY.780.001541
ORF1ab/nsp31374A1374delGCA---11AY.9.20.000037
ORF1ab/nsp31374A1374VgCagTa11AY.910.00073
ORF1ab/nsp31374A1374VgCagTa11AY.920.000287
ORF1ab/nsp31374A1374SGcaTca11AY.930.000273
ORF1ab/nsp31374A1374AgcAgcC11AY.980.000079
ORF1ab/nsp31374A1374VgCagTa11AY.98.10.000048
ORF1ab/nsp31374A1374AgcAgcT11B0.000128
ORF1ab/nsp31374A1374VgCagTa11B0.000128
ORF1ab/nsp31374A1374TGcaAca11B.10.000009
ORF1ab/nsp31374A1374IGCaATa11B.10.000009
ORF1ab/nsp31374A1374LGCaTTa11B.10.000009
ORF1ab/nsp31374A1374del1Gca-ca11B.10.000009
ORF1ab/nsp31374A1374SGcaTca11B.10.000009
ORF1ab/nsp31374A1374SGcaTca11B.1.10.000018
ORF1ab/nsp31374A1374GgCagGa11B.1.10.000018
ORF1ab/nsp31374A1374TGcaAca11B.1.10.000018
ORF1ab/nsp31374A1374AgcAgcG11B.1.1.120.007463
ORF1ab/nsp31374A1374VgCagTa11B.1.1.1530.001095
ORF1ab/nsp31374A1374AgcAgcG11B.1.1.1870.00885
ORF1ab/nsp31374A1374AgcAgcT11B.1.1.2010.02439
ORF1ab/nsp31374A1374VgCagTa11B.1.1.2220.000204
ORF1ab/nsp31374A1374VgCagTa11B.1.1.2650.003155
ORF1ab/nsp31374A1374TGcaAca11B.1.1.2940.001266
ORF1ab/nsp31374A1374delGCA---11B.1.1.3110.000358
ORF1ab/nsp31374A1374delGCA---11B.1.1.3120.001912
ORF1ab/nsp31374A1374VgCagTa11B.1.1.3370.003597
ORF1ab/nsp31374A1374VgCagTa11B.1.1.3430.020833
ORF1ab/nsp31374A1374VgCagTa11B.1.1.3470.018182
ORF1ab/nsp31374A1374delGCA---11B.1.1.3480.000796
ORF1ab/nsp31374A1374delGCA---11B.1.1.3610.045455
ORF1ab/nsp31374A1374VgCagTa11B.1.1.370.000193
ORF1ab/nsp31374A1374AgcAgcG11B.1.1.3720.000689
ORF1ab/nsp31374A1374VgCagTa11B.1.1.3750.011905
ORF1ab/nsp31374A1374delGCA---11B.1.1.4090.002833
ORF1ab/nsp31374A1374TGcaAca11B.1.1.4090.002833
ORF1ab/nsp31374A1374PGcaCca11B.1.1.5190.00004
ORF1ab/nsp31374A1374VgCagTa11B.1.1.5230.001563
ORF1ab/nsp31374A1374VgCagTa11B.1.1.540.003021
ORF1ab/nsp31374A1374TGcaAca11B.1.1.590.006494
ORF1ab/nsp31374A1374VgCagTa11B.1.1.670.004566
ORF1ab/nsp31374A1374FGCATTT11B.1.1.70.000001
ORF1ab/nsp31374A1374LGCaTTa11B.1.1.70.000001
ORF1ab/nsp31374A1374del1gcAgc-11B.1.1.70.000001
ORF1ab/nsp31374A1374VgCagTa11B.1.1390.000733
ORF1ab/nsp31374A1374delGCA---11B.1.1600.000031
ORF1ab/nsp31374A1374delGCA---11B.1.1610.017241
ORF1ab/nsp31374A1374del1Gca-ca11B.1.1770.000013
ORF1ab/nsp31374A1374delGCA---11B.1.177.150.000631
ORF1ab/nsp31374A1374VgCagTa11B.1.177.150.000631
ORF1ab/nsp31374A1374delGCA---11B.1.177.160.000664
ORF1ab/nsp31374A1374VgCagTa11B.1.177.40.000211
ORF1ab/nsp31374A1374delGCA---11B.1.177.40.000211
ORF1ab/nsp31374A1374AgcAgcG11B.1.177.40.000211
ORF1ab/nsp31374A1374VgCagTa11B.1.177.440.000519
ORF1ab/nsp31374A1374delGCA---11B.1.177.540.000606
ORF1ab/nsp31374A1374delGCA---11B.1.177.560.000668
ORF1ab/nsp31374A1374VgCagTa11B.1.177.570.000281
ORF1ab/nsp31374A1374delGCA---11B.1.177.630.002703
ORF1ab/nsp31374A1374delGCA---11B.1.177.70.000165
ORF1ab/nsp31374A1374VgCagTa11B.1.177.750.001041
ORF1ab/nsp31374A1374TGcaAca11B.1.177.810.000189
ORF1ab/nsp31374A1374delGCA---11B.1.177.810.000189
ORF1ab/nsp31374A1374delGCA---11B.1.177.870.000728
ORF1ab/nsp31374A1374delGCA---11B.1.177.90.001332
ORF1ab/nsp31374A1374SGcaTca11B.1.20.000009
ORF1ab/nsp31374A1374delGCA---11B.1.20.000009
ORF1ab/nsp31374A1374VgCagTa11B.1.2060.000816
ORF1ab/nsp31374A1374KGCaAAa11B.1.2210.000071
ORF1ab/nsp31374A1374del1gcAgc-11B.1.2210.000071
ORF1ab/nsp31374A1374EgCagAa11B.1.2210.000071
ORF1ab/nsp31374A1374TGcaAca11B.1.2210.000071
ORF1ab/nsp31374A1374VgCagTa11B.1.2320.000537
ORF1ab/nsp31374A1374VgCagTa11B.1.2430.00007
ORF1ab/nsp31374A1374TGcaAca11B.1.2430.00007
ORF1ab/nsp31374A1374SGcaTca11B.1.2580.000067
ORF1ab/nsp31374A1374delGCA---11B.1.258.160.001637
ORF1ab/nsp31374A1374AgcAgcG11B.1.3150.006061
ORF1ab/nsp31374A1374AgcAgcG11B.1.3460.001311
ORF1ab/nsp31374A1374VgCagTa11B.1.3490.000715
ORF1ab/nsp31374A1374SGcaTca11B.1.3510.00003
ORF1ab/nsp31374A1374VgCagTa11B.1.36.170.000494
ORF1ab/nsp31374A1374delGCA---11B.1.36.170.000494
ORF1ab/nsp31374A1374VgCagTa11B.1.3620.001541
ORF1ab/nsp31374A1374IGCaATa11B.1.4150.014286
ORF1ab/nsp31374A1374TGcaAca11B.1.4290.000024
ORF1ab/nsp31374A1374VgCagTa11B.1.438.10.000107
ORF1ab/nsp31374A1374AgcAgcC11B.1.4620.007246
ORF1ab/nsp31374A1374delGCA---11B.1.5170.000427
ORF1ab/nsp31374A1374HGCACAT11B.1.5240.001406
ORF1ab/nsp31374A1374AgcAgcT11B.1.5250.000113
ORF1ab/nsp31374A1374AgcAgcC11B.1.5260.000024
ORF1ab/nsp31374A1374PGcaCca11B.1.5260.000024
ORF1ab/nsp31374A1374VgCagTa11B.1.5510.00129
ORF1ab/nsp31374A1374AgcAgcG11B.1.5750.000303
ORF1ab/nsp31374A1374VgCagTa11B.1.5820.000491
ORF1ab/nsp31374A1374VgCagTa11B.1.5950.000261
ORF1ab/nsp31374A1374VgCagTa11B.1.5960.000087
ORF1ab/nsp31374A1374TGcaAca11B.1.5960.000087
ORF1ab/nsp31374A1374AgcAgcG11B.1.6210.000089
ORF1ab/nsp31374A1374delGCA---11B.1.6210.000089
ORF1ab/nsp31374A1374delGCA---11B.1.6300.005236
ORF1ab/nsp31374A1374VgCagTa11B.1.9.50.005682
ORF1ab/nsp31374A1374AgcAgcG11B.310.003731
ORF1ab/nsp31374A1374delGCA---11B.4.40.018868
ORF1ab/nsp31374A1374delGCA---11B.400.000364
ORF1ab/nsp31374A1374TGcaAca11B.6.60.000889
ORF1ab/nsp31374A1374del2GCAA--11C.350.000774
ORF1ab/nsp31374A1374EgCagAa11D.20.000075
ORF1ab/nsp31374A1374PGcaCca11D.20.000075
ORF1ab/nsp31374A1374VgCagTa11N.30.005814
ORF1ab/nsp31374A1374delGCA---11P.10.000016
ORF1ab/nsp31374A1374VgCagTa11P.1.10.000318
ORF1ab/nsp31374A1374TGcaAca11P.1.130.000898
ORF1ab/nsp31374A1374SGcaTca11P.1.140.000048
ORF1ab/nsp31374A1374VgCagTa11P.1.140.000048
ORF1ab/nsp31374A1374VgCagTa11P.1.170.000162
ORF1ab/nsp31374A1374AgcAgcG11P.20.000187
ORF1ab/nsp31374A1374delGCA---11Q.80.000165
ORF1ab/nsp31374A1374AgcAgcG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.