CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1374

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31374A1374VA2192VnonsyngCagTa286128590.9993016839-6841
ORF1ab/nsp31374A1374VA2192VnonsyngCAgTT286110.0003495286839-6841
ORF1ab/nsp31374A1374VA2192VnonsyngCAgTC286110.0003495286839-6841
ORF1ab/nsp31374A1374AA2192AsyngcAgcG4003390.84756839-6841
ORF1ab/nsp31374A1374AA2192AsyngcAgcT400460.1156839-6841
ORF1ab/nsp31374A1374AA2192AsyngcAgcC400150.03756839-6841
ORF1ab/nsp31374A1374delA2192deldelGCA---14314316839-6841
ORF1ab/nsp31374A1374TA2192TnonsynGcaAca82800.975616839-6841
ORF1ab/nsp31374A1374TA2192TnonsynGcAAcT8220.02439026839-6841
ORF1ab/nsp31374A1374EA2192EnonsyngCagAa606016839-6841
ORF1ab/nsp31374A1374SA2192SnonsynGcaTca48450.93756839-6841
ORF1ab/nsp31374A1374SA2192SnonsynGcATcC4810.02083336839-6841
ORF1ab/nsp31374A1374SA2192SnonsynGcATcT4810.02083336839-6841
ORF1ab/nsp31374A1374SA2192SnonsynGCAAGC4810.02083336839-6841
ORF1ab/nsp31374A1374del2A2192del2delGCa--a760.8571436839-6841
ORF1ab/nsp31374A1374del2A2192del2delGCAA--710.1428576839-6841
ORF1ab/nsp31374A1374del1A2192del1delgcAgc-640.6666676839-6841
ORF1ab/nsp31374A1374del1A2192del1delGca-ca620.3333336839-6841
ORF1ab/nsp31374A1374IA2192InonsynGCaATa530.66839-6841
ORF1ab/nsp31374A1374IA2192InonsynGCAATT510.26839-6841
ORF1ab/nsp31374A1374IA2192InonsynGCAATC510.26839-6841
ORF1ab/nsp31374A1374PA2192PnonsynGcaCca4416839-6841
ORF1ab/nsp31374A1374GA2192GnonsyngCagGa420.56839-6841
ORF1ab/nsp31374A1374GA2192GnonsyngCAgGC410.256839-6841
ORF1ab/nsp31374A1374GA2192GnonsyngCAgGT410.256839-6841
ORF1ab/nsp31374A1374LA2192LnonsynGCaTTa2216839-6841
ORF1ab/nsp31374A1374XA2192XnonsynGCaTAa1116839-6841
ORF1ab/nsp31374A1374DA2192DnonsyngCAgAC1116839-6841
ORF1ab/nsp31374A1374HA2192HnonsynGCACAT1116839-6841
ORF1ab/nsp31374A1374KA2192KnonsynGCaAAa1116839-6841
ORF1ab/nsp31374A1374FA2192FnonsynGCATTT1116839-6841
ORF1ab/nsp31374A1374YA2192YnonsynGCATAC1116839-6841

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31374A1374VgCagTa28592861All0.000547
ORF1ab/nsp31374A1374VgCAgTT12861All0
ORF1ab/nsp31374A1374VgCAgTC12861All0
ORF1ab/nsp31374A1374VgCagTa901901B.1.617.20.003393
ORF1ab/nsp31374A1374VgCagTa536536AY.970.911565
ORF1ab/nsp31374A1374AgcAgcG339400All0.000065
ORF1ab/nsp31374A1374AgcAgcT46400All0.000009
ORF1ab/nsp31374A1374AgcAgcC15400All0.000003
ORF1ab/nsp31374A1374VgCagTa181181B.1.1.70.000162
ORF1ab/nsp31374A1374AgcAgcG143144B.1.10.002594
ORF1ab/nsp31374A1374AgcAgcC1144B.1.10.000018
ORF1ab/nsp31374A1374delGCA---143143All0.000027
ORF1ab/nsp31374A1374VgCagTa140140AY.4.20.003036
ORF1ab/nsp31374A1374VgCagTa129129AY.50.002664
ORF1ab/nsp31374A1374VgCagTa109109AY.200.004236
ORF1ab/nsp31374A1374VgCagTa8888AY.250.000529
ORF1ab/nsp31374A1374TGcaAca8082All0.000015
ORF1ab/nsp31374A1374TGcAAcT282All0
ORF1ab/nsp31374A1374VgCagTa7878AY.390.001927
ORF1ab/nsp31374A1374VgCagTa6363AY.40.000098
ORF1ab/nsp31374A1374EgCagAa6060All0.000011
ORF1ab/nsp31374A1374delGCA---5555B.1.1.70.000049
ORF1ab/nsp31374A1374VgCagTa5151AY.430.000226
ORF1ab/nsp31374A1374VgCagTa5151AY.440.00031
ORF1ab/nsp31374A1374SGcaTca4548All0.000009
ORF1ab/nsp31374A1374SGcATcT148All0
ORF1ab/nsp31374A1374SGcATcC148All0
ORF1ab/nsp31374A1374SGCAAGC148All0
ORF1ab/nsp31374A1374VgCagTa4848AY.1030.000298
ORF1ab/nsp31374A1374EgCagAa4343AY.40.000067
ORF1ab/nsp31374A1374AgcAgcG3333B.1.1.540.099698
ORF1ab/nsp31374A1374VgCagTa3131AY.30.000308
ORF1ab/nsp31374A1374TGcaAca2424AY.40.000037
ORF1ab/nsp31374A1374VgCagTa2323AY.1200.000855
ORF1ab/nsp31374A1374VgCagTa2222AY.290.000347
ORF1ab/nsp31374A1374AgcAgcG2121AY.1030.00013
ORF1ab/nsp31374A1374SGcaTca1921B.1.1.70.000017
ORF1ab/nsp31374A1374SGcATcT121B.1.1.70.000001
ORF1ab/nsp31374A1374SGCAAGC121B.1.1.70.000001
ORF1ab/nsp31374A1374AgcAgcG1419B.1.1.70.000013
ORF1ab/nsp31374A1374AgcAgcC319B.1.1.70.000003
ORF1ab/nsp31374A1374AgcAgcT219B.1.1.70.000002
ORF1ab/nsp31374A1374VgCagTa1717AD.20.003722
ORF1ab/nsp31374A1374VgCagTa1717AY.1020.000451
ORF1ab/nsp31374A1374VgCagTa1717AY.260.000481
ORF1ab/nsp31374A1374AgcAgcT1517AY.260.000425
ORF1ab/nsp31374A1374AgcAgcG217AY.260.000057
ORF1ab/nsp31374A1374AgcAgcG1616AY.440.000097
ORF1ab/nsp31374A1374VgCagTa1616AY.730.010645
ORF1ab/nsp31374A1374VgCagTa1515B.1.1770.000198
ORF1ab/nsp31374A1374VgCagTa1414AY.340.001358
ORF1ab/nsp31374A1374VgCagTa1414B.1.10.000254
ORF1ab/nsp31374A1374AgcAgcG1414B.1.617.20.000053
ORF1ab/nsp31374A1374VgCagTa1414P.10.000221
ORF1ab/nsp31374A1374delGCA---1313AY.40.00002
ORF1ab/nsp31374A1374VgCagTa1313AY.99.20.001198
ORF1ab/nsp31374A1374VgCagTa1111B.10.000101
ORF1ab/nsp31374A1374VgCagTa1111B.1.1.5190.000437
ORF1ab/nsp31374A1374VgCagTa1111B.1.20.000097
ORF1ab/nsp31374A1374AgcAgcG99AY.250.000054
ORF1ab/nsp31374A1374AgcAgcG99AY.430.00004
ORF1ab/nsp31374A1374AgcAgcT99B.1.1.10.00294
ORF1ab/nsp31374A1374delGCA---99B.1.1770.000119
ORF1ab/nsp31374A1374VgCagTa88B.1.1.4120.061069
ORF1ab/nsp31374A1374del2GCa--a67All0.000001
ORF1ab/nsp31374A1374del2GCAA--17All0
ORF1ab/nsp31374A1374AgcAgcG67AY.40.000009
ORF1ab/nsp31374A1374AgcAgcT17AY.40.000002
ORF1ab/nsp31374A1374AgcAgcT57B.10.000046
ORF1ab/nsp31374A1374AgcAgcG27B.10.000018
ORF1ab/nsp31374A1374AgcAgcG77B.1.1.390.003568
ORF1ab/nsp31374A1374TGcaAca67B.1.1.70.000005
ORF1ab/nsp31374A1374TGcAAcT17B.1.1.70.000001
ORF1ab/nsp31374A1374VgCagTa77B.1.2340.000924
ORF1ab/nsp31374A1374VgCagTa77B.1.4290.000165
ORF1ab/nsp31374A1374del1gcAgc-46All0.000001
ORF1ab/nsp31374A1374del1Gca-ca26All0
ORF1ab/nsp31374A1374VgCagTa66AY.420.000241
ORF1ab/nsp31374A1374VgCagTa66AY.470.000187
ORF1ab/nsp31374A1374del2GCa--a66B.1.1.70.000005
ORF1ab/nsp31374A1374AgcAgcG66B.1.5760.00544
ORF1ab/nsp31374A1374SGcaTca66B.1.617.20.000023
ORF1ab/nsp31374A1374TGcaAca56B.1.617.20.000019
ORF1ab/nsp31374A1374TGcAAcT16B.1.617.20.000004
ORF1ab/nsp31374A1374VgCagTa66D.20.00045
ORF1ab/nsp31374A1374IGCaATa35All0.000001
ORF1ab/nsp31374A1374IGCAATT15All0
ORF1ab/nsp31374A1374IGCAATC15All0
ORF1ab/nsp31374A1374AgcAgcG55AY.1020.000133
ORF1ab/nsp31374A1374VgCagTa55AY.140.00044
ORF1ab/nsp31374A1374delGCA---55AY.4.50.000537
ORF1ab/nsp31374A1374VgCagTa55AY.4.50.000537
ORF1ab/nsp31374A1374TGcaAca55AY.420.000201
ORF1ab/nsp31374A1374VgCagTa55AY.860.004149
ORF1ab/nsp31374A1374VgCagTa55B.1.1600.000156
ORF1ab/nsp31374A1374VgCagTa55B.1.177.860.000917
ORF1ab/nsp31374A1374AgcAgcG55B.1.20.000044
ORF1ab/nsp31374A1374TGcaAca55B.1.20.000044
ORF1ab/nsp31374A1374VgCagTa35B.1.2210.000213
ORF1ab/nsp31374A1374VgCAgTC15B.1.2210.000071
ORF1ab/nsp31374A1374VgCAgTT15B.1.2210.000071
ORF1ab/nsp31374A1374VgCagTa55B.1.221.10.014535
ORF1ab/nsp31374A1374VgCagTa55B.1.4270.000252
ORF1ab/nsp31374A1374VgCagTa55P.20.000933
ORF1ab/nsp31374A1374PGcaCca44All0.000001
ORF1ab/nsp31374A1374GgCagGa24All0
ORF1ab/nsp31374A1374GgCAgGC14All0
ORF1ab/nsp31374A1374GgCAgGT14All0
ORF1ab/nsp31374A1374VgCagTa44AY.1170.000338
ORF1ab/nsp31374A1374VgCagTa44AY.1190.000141
ORF1ab/nsp31374A1374SGcaTca44AY.250.000024
ORF1ab/nsp31374A1374SGcaTca44AY.40.000006
ORF1ab/nsp31374A1374TGcaAca44AY.440.000024
ORF1ab/nsp31374A1374VgCagTa44AY.450.000487
ORF1ab/nsp31374A1374VgCagTa44AY.460.000416
ORF1ab/nsp31374A1374VgCagTa44AY.640.002381
ORF1ab/nsp31374A1374VgCagTa44AY.710.0019
ORF1ab/nsp31374A1374AgcAgcG34AY.750.000168
ORF1ab/nsp31374A1374AgcAgcT14AY.750.000056
ORF1ab/nsp31374A1374VgCagTa44AY.9.20.000147
ORF1ab/nsp31374A1374VgCagTa44B.1.360.000584
ORF1ab/nsp31374A1374AgcAgcG44B.1.5090.003463
ORF1ab/nsp31374A1374EgCagAa44B.1.5250.000453
ORF1ab/nsp31374A1374TGcaAca330.166667
ORF1ab/nsp31374A1374VgCagTa33AY.1130.000427
ORF1ab/nsp31374A1374VgCagTa33AY.120.10.000963
ORF1ab/nsp31374A1374AgcAgcG33AY.3.10.000256
ORF1ab/nsp31374A1374VgCagTa33AY.360.000445
ORF1ab/nsp31374A1374delGCA---33AY.430.000013
ORF1ab/nsp31374A1374VgCagTa33AY.5.40.00083
ORF1ab/nsp31374A1374VgCagTa33AY.610.000314
ORF1ab/nsp31374A1374VgCagTa33AY.750.000168
ORF1ab/nsp31374A1374AgcAgcG33AY.950.002283
ORF1ab/nsp31374A1374delGCA---33B.10.000027
ORF1ab/nsp31374A1374SGcaTca33B.1.1.4640.004418
ORF1ab/nsp31374A1374AgcAgcG33B.1.1.5210.016043
ORF1ab/nsp31374A1374EgCagAa33B.1.1.70.000003
ORF1ab/nsp31374A1374TGcaAca33B.1.1770.00004
ORF1ab/nsp31374A1374GgCagGa13B.1.2210.000071
ORF1ab/nsp31374A1374GgCAgGC13B.1.2210.000071
ORF1ab/nsp31374A1374GgCAgGT13B.1.2210.000071
ORF1ab/nsp31374A1374delGCA---33B.1.2580.0002
ORF1ab/nsp31374A1374VgCagTa33B.1.258.170.000312
ORF1ab/nsp31374A1374VgCagTa33B.1.5250.000339
ORF1ab/nsp31374A1374VgCagTa33B.1.5260.000071
ORF1ab/nsp31374A1374AgcAgcC33B.1.5960.000261
ORF1ab/nsp31374A1374delGCA---33B.1.617.20.000011
ORF1ab/nsp31374A1374VgCagTa33B.1.6210.000266
ORF1ab/nsp31374A1374delGCA---220.111111
ORF1ab/nsp31374A1374EgCagAa220.111111
ORF1ab/nsp31374A1374SGcaTca120.055556
ORF1ab/nsp31374A1374SGcATcC120.055556
ORF1ab/nsp31374A1374LGCaTTa22All0
ORF1ab/nsp31374A1374AgcAgcG22AY.10.000791
ORF1ab/nsp31374A1374VgCagTa22AY.1000.000092
ORF1ab/nsp31374A1374VgCagTa22AY.1180.000125
ORF1ab/nsp31374A1374VgCagTa22AY.160.000759
ORF1ab/nsp31374A1374EgCagAa22AY.200.000078
ORF1ab/nsp31374A1374AgcAgcG12AY.390.000025
ORF1ab/nsp31374A1374AgcAgcT12AY.390.000025
ORF1ab/nsp31374A1374VgCagTa22AY.39.10.000079
ORF1ab/nsp31374A1374TGcaAca22AY.4.20.000043
ORF1ab/nsp31374A1374AgcAgcT12AY.4.20.000022
ORF1ab/nsp31374A1374AgcAgcG12AY.4.20.000022
ORF1ab/nsp31374A1374TGcaAca22AY.430.000009
ORF1ab/nsp31374A1374delGCA---22AY.50.000041
ORF1ab/nsp31374A1374TGcaAca22AY.620.000871
ORF1ab/nsp31374A1374VgCagTa22AY.7.20.001119
ORF1ab/nsp31374A1374VgCagTa22AY.700.000417
ORF1ab/nsp31374A1374TGcaAca22AY.880.001768
ORF1ab/nsp31374A1374VgCagTa22AY.90.000135
ORF1ab/nsp31374A1374VgCagTa22AY.980.000158
ORF1ab/nsp31374A1374EgCagAa22B.10.000018
ORF1ab/nsp31374A1374delGCA---22B.1.10.000036
ORF1ab/nsp31374A1374VgCagTa22B.1.1.1980.002937
ORF1ab/nsp31374A1374VgCagTa22B.1.1.2140.000111
ORF1ab/nsp31374A1374TGcaAca22B.1.1.3060.000877
ORF1ab/nsp31374A1374VgCagTa22B.1.1.390.001019
ORF1ab/nsp31374A1374AgcAgcG22B.1.1.4480.004065
ORF1ab/nsp31374A1374IGCAATT12B.1.1.70.000001
ORF1ab/nsp31374A1374IGCaATa12B.1.1.70.000001
ORF1ab/nsp31374A1374VgCagTa22B.1.1.830.00542
ORF1ab/nsp31374A1374VgCagTa22B.1.1.990.047619
ORF1ab/nsp31374A1374AgcAgcG22B.1.1770.000026
ORF1ab/nsp31374A1374delGCA---22B.1.177.180.00232
ORF1ab/nsp31374A1374VgCagTa22B.1.177.600.000437
ORF1ab/nsp31374A1374AgcAgcG22B.1.177.830.002963
ORF1ab/nsp31374A1374delGCA---22B.1.2210.000142
ORF1ab/nsp31374A1374AgcAgcC12B.1.2210.000071
ORF1ab/nsp31374A1374AgcAgcT12B.1.2210.000071
ORF1ab/nsp31374A1374AgcAgcC22B.1.2430.000139
ORF1ab/nsp31374A1374AgcAgcG22B.1.2580.000133
ORF1ab/nsp31374A1374VgCagTa22B.1.3510.000059
ORF1ab/nsp31374A1374VgCagTa22B.1.36.290.001035
ORF1ab/nsp31374A1374VgCagTa22B.1.4000.000858
ORF1ab/nsp31374A1374AgcAgcG22B.1.4290.000047
ORF1ab/nsp31374A1374VgCagTa22B.1.5270.007407
ORF1ab/nsp31374A1374del1gcAgc-22B.1.617.20.000008
ORF1ab/nsp31374A1374VgCagTa22C.370.000232
ORF1ab/nsp31374A1374AgcAgcT22C.370.000232
ORF1ab/nsp31374A1374AgcAgcT22S.10.009901
ORF1ab/nsp31374A1374AgcAgcC110.055556
ORF1ab/nsp31374A1374XGCaTAa110.055556
ORF1ab/nsp31374A1374DgCAgAC110.055556
ORF1ab/nsp31374A1374YGCATAC110.055556
ORF1ab/nsp31374A1374VgCagTa11A.20.000662
ORF1ab/nsp31374A1374SGcaTca11A.20.000662
ORF1ab/nsp31374A1374IGCAATC11A.210.00277
ORF1ab/nsp31374A1374delGCA---11A.280.002646
ORF1ab/nsp31374A1374YGCATAC11All0
ORF1ab/nsp31374A1374XGCaTAa11All0
ORF1ab/nsp31374A1374DgCAgAC11All0
ORF1ab/nsp31374A1374FGCATTT11All0
ORF1ab/nsp31374A1374HGCACAT11All0
ORF1ab/nsp31374A1374KGCaAAa11All0
ORF1ab/nsp31374A1374AgcAgcT11AY.100.00053
ORF1ab/nsp31374A1374delGCA---11AY.1000.000046
ORF1ab/nsp31374A1374VgCagTa11AY.1010.00049
ORF1ab/nsp31374A1374EgCagAa11AY.1030.000006
ORF1ab/nsp31374A1374VgCagTa11AY.1080.001103
ORF1ab/nsp31374A1374VgCagTa11AY.1110.000183
ORF1ab/nsp31374A1374AgcAgcT11AY.1130.000142
ORF1ab/nsp31374A1374VgCagTa11AY.1160.000287
ORF1ab/nsp31374A1374AgcAgcG11AY.1170.000085
ORF1ab/nsp31374A1374AgcAgcC11AY.1200.000037
ORF1ab/nsp31374A1374VgCagTa11AY.16.10.00047
ORF1ab/nsp31374A1374delGCA---11AY.190.00114
ORF1ab/nsp31374A1374AgcAgcG11AY.200.000039
ORF1ab/nsp31374A1374TGcaAca11AY.200.000039
ORF1ab/nsp31374A1374VgCagTa11AY.230.00007
ORF1ab/nsp31374A1374TGcaAca11AY.260.000028
ORF1ab/nsp31374A1374VgCagTa11AY.29.10.000221
ORF1ab/nsp31374A1374AgcAgcT11AY.30.00001
ORF1ab/nsp31374A1374VgCagTa11AY.3.10.000085
ORF1ab/nsp31374A1374VgCagTa11AY.330.000067
ORF1ab/nsp31374A1374delGCA---11AY.360.000148
ORF1ab/nsp31374A1374VgCagTa11AY.370.000316
ORF1ab/nsp31374A1374delGCA---11AY.390.000025
ORF1ab/nsp31374A1374PGcaCca11AY.40.000002
ORF1ab/nsp31374A1374EgCagAa11AY.4.50.000107
ORF1ab/nsp31374A1374AgcAgcG11AY.460.000104
ORF1ab/nsp31374A1374delGCA---11AY.46.20.000635
ORF1ab/nsp31374A1374VgCagTa11AY.46.40.000165
ORF1ab/nsp31374A1374AgcAgcG11AY.46.60.000072
ORF1ab/nsp31374A1374AgcAgcG11AY.470.000031
ORF1ab/nsp31374A1374AgcAgcG11AY.50.000021
ORF1ab/nsp31374A1374delGCA---11AY.520.000814
ORF1ab/nsp31374A1374VgCagTa11AY.590.00053
ORF1ab/nsp31374A1374TGcaAca11AY.60.000041
ORF1ab/nsp31374A1374delGCA---11AY.600.000938
ORF1ab/nsp31374A1374delGCA---11AY.650.000533
ORF1ab/nsp31374A1374VgCagTa11AY.650.000533
ORF1ab/nsp31374A1374VgCagTa11AY.7.10.000113
ORF1ab/nsp31374A1374delGCA---11AY.730.000665
ORF1ab/nsp31374A1374VgCagTa11AY.740.000116
ORF1ab/nsp31374A1374delGCA---11AY.750.000056
ORF1ab/nsp31374A1374VgCagTa11AY.770.001127
ORF1ab/nsp31374A1374VgCagTa11AY.780.001541
ORF1ab/nsp31374A1374delGCA---11AY.9.20.000037
ORF1ab/nsp31374A1374VgCagTa11AY.910.00073
ORF1ab/nsp31374A1374VgCagTa11AY.920.000287
ORF1ab/nsp31374A1374SGcaTca11AY.930.000273
ORF1ab/nsp31374A1374AgcAgcC11AY.980.000079
ORF1ab/nsp31374A1374VgCagTa11AY.98.10.000048
ORF1ab/nsp31374A1374AgcAgcT11B0.000128
ORF1ab/nsp31374A1374VgCagTa11B0.000128
ORF1ab/nsp31374A1374TGcaAca11B.10.000009
ORF1ab/nsp31374A1374IGCaATa11B.10.000009
ORF1ab/nsp31374A1374LGCaTTa11B.10.000009
ORF1ab/nsp31374A1374del1Gca-ca11B.10.000009
ORF1ab/nsp31374A1374SGcaTca11B.10.000009
ORF1ab/nsp31374A1374SGcaTca11B.1.10.000018
ORF1ab/nsp31374A1374GgCagGa11B.1.10.000018
ORF1ab/nsp31374A1374TGcaAca11B.1.10.000018
ORF1ab/nsp31374A1374AgcAgcG11B.1.1.120.007463
ORF1ab/nsp31374A1374VgCagTa11B.1.1.1530.001095
ORF1ab/nsp31374A1374AgcAgcG11B.1.1.1870.00885
ORF1ab/nsp31374A1374AgcAgcT11B.1.1.2010.02439
ORF1ab/nsp31374A1374VgCagTa11B.1.1.2220.000204
ORF1ab/nsp31374A1374VgCagTa11B.1.1.2650.003155
ORF1ab/nsp31374A1374TGcaAca11B.1.1.2940.001266
ORF1ab/nsp31374A1374delGCA---11B.1.1.3110.000358
ORF1ab/nsp31374A1374delGCA---11B.1.1.3120.001912
ORF1ab/nsp31374A1374VgCagTa11B.1.1.3370.003597
ORF1ab/nsp31374A1374VgCagTa11B.1.1.3430.020833
ORF1ab/nsp31374A1374VgCagTa11B.1.1.3470.018182
ORF1ab/nsp31374A1374delGCA---11B.1.1.3480.000796
ORF1ab/nsp31374A1374delGCA---11B.1.1.3610.045455
ORF1ab/nsp31374A1374VgCagTa11B.1.1.370.000193
ORF1ab/nsp31374A1374AgcAgcG11B.1.1.3720.000689
ORF1ab/nsp31374A1374VgCagTa11B.1.1.3750.011905
ORF1ab/nsp31374A1374delGCA---11B.1.1.4090.002833
ORF1ab/nsp31374A1374TGcaAca11B.1.1.4090.002833
ORF1ab/nsp31374A1374PGcaCca11B.1.1.5190.00004
ORF1ab/nsp31374A1374VgCagTa11B.1.1.5230.001563
ORF1ab/nsp31374A1374VgCagTa11B.1.1.540.003021
ORF1ab/nsp31374A1374TGcaAca11B.1.1.590.006494
ORF1ab/nsp31374A1374VgCagTa11B.1.1.670.004566
ORF1ab/nsp31374A1374FGCATTT11B.1.1.70.000001
ORF1ab/nsp31374A1374LGCaTTa11B.1.1.70.000001
ORF1ab/nsp31374A1374del1gcAgc-11B.1.1.70.000001
ORF1ab/nsp31374A1374VgCagTa11B.1.1390.000733
ORF1ab/nsp31374A1374delGCA---11B.1.1600.000031
ORF1ab/nsp31374A1374delGCA---11B.1.1610.017241
ORF1ab/nsp31374A1374del1Gca-ca11B.1.1770.000013
ORF1ab/nsp31374A1374delGCA---11B.1.177.150.000631
ORF1ab/nsp31374A1374VgCagTa11B.1.177.150.000631
ORF1ab/nsp31374A1374delGCA---11B.1.177.160.000664
ORF1ab/nsp31374A1374VgCagTa11B.1.177.40.000211
ORF1ab/nsp31374A1374delGCA---11B.1.177.40.000211
ORF1ab/nsp31374A1374AgcAgcG11B.1.177.40.000211
ORF1ab/nsp31374A1374VgCagTa11B.1.177.440.000519
ORF1ab/nsp31374A1374delGCA---11B.1.177.540.000606
ORF1ab/nsp31374A1374delGCA---11B.1.177.560.000668
ORF1ab/nsp31374A1374VgCagTa11B.1.177.570.000281
ORF1ab/nsp31374A1374delGCA---11B.1.177.630.002703
ORF1ab/nsp31374A1374delGCA---11B.1.177.70.000165
ORF1ab/nsp31374A1374VgCagTa11B.1.177.750.001041
ORF1ab/nsp31374A1374TGcaAca11B.1.177.810.000189
ORF1ab/nsp31374A1374delGCA---11B.1.177.810.000189
ORF1ab/nsp31374A1374delGCA---11B.1.177.870.000728
ORF1ab/nsp31374A1374delGCA---11B.1.177.90.001332
ORF1ab/nsp31374A1374SGcaTca11B.1.20.000009
ORF1ab/nsp31374A1374delGCA---11B.1.20.000009
ORF1ab/nsp31374A1374VgCagTa11B.1.2060.000816
ORF1ab/nsp31374A1374KGCaAAa11B.1.2210.000071
ORF1ab/nsp31374A1374del1gcAgc-11B.1.2210.000071
ORF1ab/nsp31374A1374EgCagAa11B.1.2210.000071
ORF1ab/nsp31374A1374TGcaAca11B.1.2210.000071
ORF1ab/nsp31374A1374VgCagTa11B.1.2320.000537
ORF1ab/nsp31374A1374VgCagTa11B.1.2430.00007
ORF1ab/nsp31374A1374TGcaAca11B.1.2430.00007
ORF1ab/nsp31374A1374SGcaTca11B.1.2580.000067
ORF1ab/nsp31374A1374delGCA---11B.1.258.160.001637
ORF1ab/nsp31374A1374AgcAgcG11B.1.3150.006061
ORF1ab/nsp31374A1374AgcAgcG11B.1.3460.001311
ORF1ab/nsp31374A1374VgCagTa11B.1.3490.000715
ORF1ab/nsp31374A1374SGcaTca11B.1.3510.00003
ORF1ab/nsp31374A1374VgCagTa11B.1.36.170.000494
ORF1ab/nsp31374A1374delGCA---11B.1.36.170.000494
ORF1ab/nsp31374A1374VgCagTa11B.1.3620.001541
ORF1ab/nsp31374A1374IGCaATa11B.1.4150.014286
ORF1ab/nsp31374A1374TGcaAca11B.1.4290.000024
ORF1ab/nsp31374A1374VgCagTa11B.1.438.10.000107
ORF1ab/nsp31374A1374AgcAgcC11B.1.4620.007246
ORF1ab/nsp31374A1374delGCA---11B.1.5170.000427
ORF1ab/nsp31374A1374HGCACAT11B.1.5240.001406
ORF1ab/nsp31374A1374AgcAgcT11B.1.5250.000113
ORF1ab/nsp31374A1374AgcAgcC11B.1.5260.000024
ORF1ab/nsp31374A1374PGcaCca11B.1.5260.000024
ORF1ab/nsp31374A1374VgCagTa11B.1.5510.00129
ORF1ab/nsp31374A1374AgcAgcG11B.1.5750.000303
ORF1ab/nsp31374A1374VgCagTa11B.1.5820.000491
ORF1ab/nsp31374A1374VgCagTa11B.1.5950.000261
ORF1ab/nsp31374A1374VgCagTa11B.1.5960.000087
ORF1ab/nsp31374A1374TGcaAca11B.1.5960.000087
ORF1ab/nsp31374A1374AgcAgcG11B.1.6210.000089
ORF1ab/nsp31374A1374delGCA---11B.1.6210.000089
ORF1ab/nsp31374A1374delGCA---11B.1.6300.005236
ORF1ab/nsp31374A1374VgCagTa11B.1.9.50.005682
ORF1ab/nsp31374A1374AgcAgcG11B.310.003731
ORF1ab/nsp31374A1374delGCA---11B.4.40.018868
ORF1ab/nsp31374A1374delGCA---11B.400.000364
ORF1ab/nsp31374A1374TGcaAca11B.6.60.000889
ORF1ab/nsp31374A1374del2GCAA--11C.350.000774
ORF1ab/nsp31374A1374EgCagAa11D.20.000075
ORF1ab/nsp31374A1374PGcaCca11D.20.000075
ORF1ab/nsp31374A1374VgCagTa11N.30.005814
ORF1ab/nsp31374A1374delGCA---11P.10.000016
ORF1ab/nsp31374A1374VgCagTa11P.1.10.000318
ORF1ab/nsp31374A1374TGcaAca11P.1.130.000898
ORF1ab/nsp31374A1374SGcaTca11P.1.140.000048
ORF1ab/nsp31374A1374VgCagTa11P.1.140.000048
ORF1ab/nsp31374A1374VgCagTa11P.1.170.000162
ORF1ab/nsp31374A1374AgcAgcG11P.20.000187
ORF1ab/nsp31374A1374delGCA---11Q.80.000165
ORF1ab/nsp31374A1374AgcAgcG11R.10.00009