CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1354 | F1354F | F2172F | syn | ttC | ttT | 8522 | 8522 | 1 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354L | F2172L | nonsyn | Ttc | Ctc | 198 | 167 | 0.843434 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354L | F2172L | nonsyn | ttC | ttA | 198 | 28 | 0.141414 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354L | F2172L | nonsyn | ttC | ttG | 198 | 3 | 0.0151515 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354del | F2172del | del | TTC | --- | 171 | 171 | 1 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354S | F2172S | nonsyn | tTc | tCc | 39 | 37 | 0.948718 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354S | F2172S | nonsyn | tTC | tCT | 39 | 2 | 0.0512821 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354del1 | F2172del1 | del | ttC | tt- | 14 | 13 | 0.928571 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354del1 | F2172del1 | del | Ttc | -tc | 14 | 1 | 0.0714286 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354C | F2172C | nonsyn | tTc | tGc | 12 | 12 | 1 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354I | F2172I | nonsyn | Ttc | Atc | 9 | 6 | 0.666667 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354I | F2172I | nonsyn | TtC | AtA | 9 | 2 | 0.222222 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354I | F2172I | nonsyn | TtC | AtT | 9 | 1 | 0.111111 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354Y | F2172Y | nonsyn | tTc | tAc | 6 | 6 | 1 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354V | F2172V | nonsyn | Ttc | Gtc | 4 | 4 | 1 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354del2 | F2172del2 | del | tTC | t-- | 1 | 1 | 1 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354D | F2172D | nonsyn | TTC | GAT | 1 | 1 | 1 | 6779-6781 |
ORF1ab/nsp3 | 1354 | F1354P | F2172P | nonsyn | TTc | CCc | 1 | 1 | 1 | 6779-6781 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 8522 | 8522 | All | 0.00163 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1893 | 1893 | B.1.617.2 | 0.007128 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1207 | 1207 | B.1.1.7 | 0.001081 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 852 | 852 | AY.4 | 0.001326 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 493 | 493 | AY.103 | 0.003061 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 260 | 260 | AY.43 | 0.001152 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 247 | 247 | AY.39 | 0.006104 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 167 | 198 | All | 0.000032 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 28 | 198 | All | 0.000005 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttG | 3 | 198 | All | 0.000001 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 176 | 176 | AY.47 | 0.005475 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 171 | 171 | All | 0.000033 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 164 | 164 | B.1 | 0.001502 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 161 | 161 | B.1.526 | 0.003784 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 159 | 159 | B.1.232 | 0.085438 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 139 | 139 | AY.54 | 0.013253 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 130 | 130 | B.1.2 | 0.001145 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 118 | 118 | B.1.1.128 | 0.836879 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 114 | 114 | B.1.1.222 | 0.023256 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 105 | 105 | P.1 | 0.001654 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 101 | 101 | AY.120 | 0.003755 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 90 | 90 | AY.25 | 0.000541 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 90 | 90 | B.1.427 | 0.004545 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 74 | 74 | AY.5 | 0.001528 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 74 | 74 | B.1.1.7 | 0.000066 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 73 | 73 | B.1.1.375 | 0.869048 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 72 | 72 | AY.36 | 0.010671 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 67 | 71 | B.1.617.2 | 0.000252 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 3 | 71 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttG | 1 | 71 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 70 | 70 | B.1.1 | 0.00127 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 69 | 69 | AY.14 | 0.006073 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 68 | 68 | AY.3 | 0.000676 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 68 | 68 | B.1.160 | 0.002121 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 63 | 63 | AY.44 | 0.000383 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 62 | 62 | P.2 | 0.011571 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 49 | 49 | B.1.429 | 0.001153 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 47 | 47 | AY.70 | 0.0098 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 40 | 40 | B.1.177.45 | 0.01525 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 37 | 39 | All | 0.000007 |
ORF1ab/nsp3 | 1354 | F1354S | tTC | tCT | 2 | 39 | All | 0 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 34 | 34 | B.1.234 | 0.004486 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 33 | 33 | B.1.177 | 0.000435 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 33 | 33 | B.1.177.60 | 0.007208 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 31 | 31 | AY.29 | 0.000489 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 30 | 30 | B.1.243 | 0.002088 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 30 | 30 | B.1.348 | 0.545455 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 28 | 28 | B.1.1.519 | 0.001112 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 25 | 28 | B.1.1.7 | 0.000022 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 2 | 28 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttG | 1 | 28 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 27 | 27 | AY.33 | 0.001803 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 24 | 24 | AY.26 | 0.000679 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 19 | 22 | B.1.1 | 0.000345 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 3 | 22 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 21 | 21 | AY.20 | 0.000816 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 21 | 21 | B.1.637 | 0.001535 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 19 | 19 | AY.9 | 0.001284 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 19 | 19 | B.1.1.214 | 0.001054 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 19 | 19 | B.1.564 | 0.008092 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 19 | 19 | B.1.588 | 0.017288 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 17 | 17 | AY.92 | 0.004884 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 16 | 16 | AY.114 | 0.003698 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 16 | 16 | C.37 | 0.001857 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 15 | 15 | AY.34.1 | 0.007649 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 15 | 15 | AY.98.1 | 0.000726 |
ORF1ab/nsp3 | 1354 | F1354del1 | ttC | tt- | 13 | 14 | All | 0.000002 |
ORF1ab/nsp3 | 1354 | F1354del1 | Ttc | -tc | 1 | 14 | All | 0 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 14 | 14 | B.1.582 | 0.006869 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 13 | 13 | AY.34 | 0.001261 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 12 | 13 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 1 | 13 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 13 | 13 | B.1.221 | 0.000923 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 13 | 13 | C.1.1 | 1 |
ORF1ab/nsp3 | 1354 | F1354C | tTc | tGc | 12 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 12 | 12 | AY.118 | 0.000752 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 12 | 12 | B.1.1.63 | 0.00463 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 12 | 12 | P.1.7 | 0.003831 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 11 | 11 | AY.3.1 | 0.000938 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 11 | 11 | AY.6 | 0.000452 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 11 | 11 | B.1.111 | 0.012926 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 11 | 11 | B.1.93 | 0.010271 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 11 | 11 | P.1.15 | 0.002556 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 10 | 10 | B.1.1.176 | 0.004394 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp3 | 1354 | F1354I | Ttc | Atc | 6 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 1354 | F1354I | TtC | AtA | 2 | 9 | All | 0 |
ORF1ab/nsp3 | 1354 | F1354I | TtC | AtT | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 9 | 9 | AY.71 | 0.004276 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 9 | 9 | B.1.1.10 | 0.010033 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 9 | 9 | B.1.311 | 0.002471 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 9 | 9 | B.1.36.17 | 0.004447 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 8 | 8 | AY.107 | 0.003728 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 8 | 8 | B.1.1.1 | 0.002614 |
ORF1ab/nsp3 | 1354 | F1354del1 | ttC | tt- | 7 | 8 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1354 | F1354del1 | Ttc | -tc | 1 | 8 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 8 | 8 | B.1.177.44 | 0.004152 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 8 | 8 | B.1.177.62 | 0.009535 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 8 | 8 | B.1.436 | 0.00823 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 7 | 7 | AY.116 | 0.002007 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 7 | 7 | AY.65 | 0.003731 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 6 | 7 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1354 | F1354S | tTC | tCT | 1 | 7 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 7 | 7 | B.1.128 | 0.004447 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 7 | 7 | B.1.177.15 | 0.004416 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 7 | 7 | P.1.5 | 0.538462 |
ORF1ab/nsp3 | 1354 | F1354Y | tTc | tAc | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | AY.62 | 0.002614 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | AY.73 | 0.003992 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 3 | 6 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 3 | 6 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | B.1.1.25 | 0.003411 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | B.1.1.306 | 0.00263 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | B.1.439 | 0.035503 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 6 | 6 | B.3 | 0.004983 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | B | 0.000639 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | B.1.400 | 0.002145 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | B.1.470 | 0.007022 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp3 | 1354 | F1354I | TtC | AtA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1354 | F1354I | Ttc | Atc | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1354 | F1354V | Ttc | Gtc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1354 | F1354S | tTC | tCT | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 4 | 4 | B.1.104 | 0.01476 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 4 | 4 | B.1.177.43 | 0.005908 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 4 | 4 | B.1.229 | 0.038835 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp3 | 1354 | F1354C | tTc | tGc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | AY.63 | 0.001161 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | B.1.1.174 | 0.010135 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | B.1.1.243 | 0.012245 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1354 | F1354Y | tTc | tAc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | B.1.597 | 0.013889 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | P.1.9 | 0.014423 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | Q.2 | 0.00184 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 3 | 3 | Q.7 | 0.003333 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | A.2.5.3 | 0.020619 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AH.3 | 0.007605 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 2 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 1 | 2 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1354 | F1354C | tTc | tGc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1354 | F1354I | Ttc | Atc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 1354 | F1354del1 | ttC | tt- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.135 | 0.00939 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.304 | 0.005618 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.307 | 0.005063 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.355 | 0.030769 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 1354 | F1354del1 | ttC | tt- | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.486 | 0.003155 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 1354 | F1354V | Ttc | Gtc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.451 | 0.016393 |
ORF1ab/nsp3 | 1354 | F1354C | tTc | tGc | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | C.6 | 0.074074 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | A.18 | 0.05 |
ORF1ab/nsp3 | 1354 | F1354C | tTc | tGc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1354 | F1354Y | tTc | tAc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1354 | F1354D | TTC | GAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1354 | F1354P | TTc | CCc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1354 | F1354del2 | tTC | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 1354 | F1354I | Ttc | Atc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1354 | F1354C | tTc | tGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1354 | F1354C | tTc | tGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1354 | F1354V | Ttc | Gtc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | AZ.6 | 0.008403 |
ORF1ab/nsp3 | 1354 | F1354C | tTc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1354 | F1354I | Ttc | Atc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1354 | F1354del2 | tTC | t-- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1354 | F1354del1 | ttC | tt- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1354 | F1354I | TtC | AtT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1354 | F1354P | TTc | CCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1354 | F1354C | tTc | tGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.106 | 0.03125 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.74 | 0.015152 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 1354 | F1354Y | tTc | tAc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.227 | 0.047619 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.274 | 0.011905 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1354 | F1354del1 | ttC | tt- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1354 | F1354Y | tTc | tAc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1354 | F1354L | ttC | ttA | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1354 | F1354V | Ttc | Gtc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp3 | 1354 | F1354D | TTC | GAT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1354 | F1354S | tTc | tCc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | L.2 | 0.011364 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1354 | F1354L | Ttc | Ctc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp3 | 1354 | F1354del | TTC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1354 | F1354F | ttC | ttT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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