CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1350 | Y1350Y | Y2168Y | syn | taT | taC | 779 | 779 | 1 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350C | Y2168C | nonsyn | tAt | tGt | 180 | 180 | 1 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350del | Y2168del | del | TAT | --- | 151 | 151 | 1 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350H | Y2168H | nonsyn | Tat | Cat | 58 | 58 | 1 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350S | Y2168S | nonsyn | tAt | tCt | 8 | 5 | 0.625 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350S | Y2168S | nonsyn | tAT | tCG | 8 | 2 | 0.25 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350S | Y2168S | nonsyn | tAT | tCA | 8 | 1 | 0.125 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350del1 | Y2168del1 | del | taT | ta- | 7 | 6 | 0.857143 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350del1 | Y2168del1 | del | Tat | -at | 7 | 1 | 0.142857 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350N | Y2168N | nonsyn | Tat | Aat | 5 | 5 | 1 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350D | Y2168D | nonsyn | Tat | Gat | 5 | 5 | 1 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350del2 | Y2168del2 | del | TAt | --t | 4 | 3 | 0.75 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350X | Y2168X | nonsyn | taT | taG | 4 | 2 | 0.5 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350T | Y2168T | nonsyn | TAt | ACt | 4 | 2 | 0.5 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350T | Y2168T | nonsyn | TAT | ACG | 4 | 2 | 0.5 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350X | Y2168X | nonsyn | taT | taA | 4 | 2 | 0.5 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350del2 | Y2168del2 | del | tAT | t-- | 4 | 1 | 0.25 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350F | Y2168F | nonsyn | tAt | tTt | 2 | 2 | 1 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350I | Y2168I | nonsyn | TAt | ATt | 2 | 1 | 0.5 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350I | Y2168I | nonsyn | TAT | ATA | 2 | 1 | 0.5 | 6767-6769 |
ORF1ab/nsp3 | 1350 | Y1350L | Y2168L | nonsyn | TAt | CTt | 1 | 1 | 1 | 6767-6769 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 779 | 779 | All | 0.000149 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 375 | 375 | B.1.36.18 | 0.157563 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 180 | 180 | All | 0.000034 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 151 | 151 | All | 0.000029 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 87 | 87 | B.1.593 | 0.945652 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 60 | 60 | B.1.1.7 | 0.000054 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 60 | 60 | B.1.1.7 | 0.000054 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 58 | 58 | All | 0.000011 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 49 | 49 | B.1.1.317 | 0.020173 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 43 | 43 | AY.4.2 | 0.000933 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 37 | 37 | AY.44 | 0.000225 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 33 | 33 | B.1.577 | 0.02268 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 31 | 31 | B.1.1.7 | 0.000028 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 19 | 19 | AY.43 | 0.000084 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 1350 | Y1350S | tAt | tCt | 5 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1350 | Y1350S | tAT | tCG | 2 | 8 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350S | tAT | tCA | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350del1 | taT | ta- | 6 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1350 | Y1350del1 | Tat | -at | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1350 | Y1350D | Tat | Gat | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1350 | Y1350N | Tat | Aat | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1350 | Y1350D | Tat | Gat | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1350 | Y1350S | tAT | tCG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1350 | Y1350T | TAT | ACG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1350 | Y1350T | TAt | ACt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1350 | Y1350S | tAt | tCt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1350 | Y1350del2 | TAt | --t | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1350 | Y1350X | taT | taA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350T | TAt | ACt | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350T | TAT | ACG | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350X | taT | taG | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350del2 | tAT | t-- | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1350 | Y1350del1 | taT | ta- | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1350 | Y1350del1 | Tat | -at | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 4 | 4 | B.1.177.18 | 0.00464 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1350 | Y1350N | Tat | Aat | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 3 | 3 | B.1.229 | 0.029126 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1350 | Y1350F | tAt | tTt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350I | TAT | ATA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350I | TAt | ATt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | AU.1 | 0.002532 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1350 | Y1350S | tAt | tCt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1350 | Y1350L | TAt | CTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1350 | Y1350S | tAt | tCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1350 | Y1350del1 | taT | ta- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1350 | Y1350X | taT | taG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1350 | Y1350del2 | TAt | --t | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1350 | Y1350F | tAt | tTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1350 | Y1350del1 | taT | ta- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1350 | Y1350I | TAT | ATA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1350 | Y1350X | taT | taG | 1 | 1 | B.1.1.29 | 0.010309 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.1.438 | 0.05 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.1.449 | 0.022727 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1350 | Y1350F | tAt | tTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1350 | Y1350I | TAt | ATt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1350 | Y1350del2 | tAT | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1350 | Y1350N | Tat | Aat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1350 | Y1350X | taT | taA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1350 | Y1350del1 | taT | ta- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1350 | Y1350del2 | TAt | --t | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1350 | Y1350N | Tat | Aat | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1350 | Y1350X | taT | taA | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1350 | Y1350H | Tat | Cat | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 1350 | Y1350S | tAT | tCA | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1350 | Y1350L | TAt | CTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1350 | Y1350del2 | TAt | --t | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1350 | Y1350C | tAt | tGt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1350 | Y1350Y | taT | taC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1350 | Y1350del | TAT | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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