CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 135

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3135D135YD953YnonsynGatTat3534353413122-3124
ORF1ab/nsp3135D135DD953DsyngaTgaC1521152113122-3124
ORF1ab/nsp3135D135ND953NnonsynGatAat1278127813122-3124
ORF1ab/nsp3135D135GD953GnonsyngAtgGt2862850.9965033122-3124
ORF1ab/nsp3135D135GD953GnonsyngATgGC28610.00349653122-3124
ORF1ab/nsp3135D135AD953AnonsyngAtgCt1711670.9766083122-3124
ORF1ab/nsp3135D135AD953AnonsyngATgCA17140.02339183122-3124
ORF1ab/nsp3135D135delD953deldelGAT---636313122-3124
ORF1ab/nsp3135D135VD953VnonsyngAtgTt242413122-3124
ORF1ab/nsp3135D135ED953EnonsyngaTgaA18110.6111113122-3124
ORF1ab/nsp3135D135ED953EnonsyngaTgaG1870.3888893122-3124
ORF1ab/nsp3135D135HD953HnonsynGatCat151513122-3124
ORF1ab/nsp3135D135del1D953del1delGat-at540.83122-3124
ORF1ab/nsp3135D135del1D953del1delgaTga-510.23122-3124
ORF1ab/nsp3135D135del2D953del2delGAt--t2213122-3124
ORF1ab/nsp3135D135LD953LnonsynGAtCTt1113122-3124
ORF1ab/nsp3135D135CD953CnonsynGAtTGt1113122-3124
ORF1ab/nsp3135D135RD953RnonsynGAtCGt1113122-3124

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3135D135YGatTat35343534All0.000676
ORF1ab/nsp3135D135DgaTgaC15211521All0.000291
ORF1ab/nsp3135D135NGatAat12781278All0.000244
ORF1ab/nsp3135D135DgaTgaC11531153B.1.1.70.001032
ORF1ab/nsp3135D135NGatAat919919AZ.20.754516
ORF1ab/nsp3135D135YGatTat873873AY.40.001359
ORF1ab/nsp3135D135YGatTat307307B.1.1.5190.012191
ORF1ab/nsp3135D135YGatTat307307B.1.1.70.000275
ORF1ab/nsp3135D135GgAtgGt285286All0.000055
ORF1ab/nsp3135D135GgATgGC1286All0
ORF1ab/nsp3135D135YGatTat271271AY.420.010902
ORF1ab/nsp3135D135AgAtgCt167171All0.000032
ORF1ab/nsp3135D135AgATgCA4171All0.000001
ORF1ab/nsp3135D135YGatTat132132B.1.177.40.02786
ORF1ab/nsp3135D135YGatTat126126B.1.1.4320.159494
ORF1ab/nsp3135D135YGatTat124124B.1.1770.001633
ORF1ab/nsp3135D135NGatAat123123AZ.2.11
ORF1ab/nsp3135D135DgaTgaC114114AY.40.000177
ORF1ab/nsp3135D135YGatTat111111AY.200.004314
ORF1ab/nsp3135D135YGatTat108108B.1.20.000951
ORF1ab/nsp3135D135AgAtgCt106106AY.40.000165
ORF1ab/nsp3135D135YGatTat106106B.10.000971
ORF1ab/nsp3135D135YGatTat8585B.1.177.830.125926
ORF1ab/nsp3135D135YGatTat8080B.1.1.1700.099751
ORF1ab/nsp3135D135YGatTat7171AY.630.027466
ORF1ab/nsp3135D135YGatTat6666B.1.617.20.000249
ORF1ab/nsp3135D135YGatTat6464AY.430.000284
ORF1ab/nsp3135D135delGAT---6363All0.000012
ORF1ab/nsp3135D135YGatTat5959C.160.062566
ORF1ab/nsp3135D135GgAtgGt5656B.1.177.540.03396
ORF1ab/nsp3135D135GgAtgGt5454B.1.1.70.000048
ORF1ab/nsp3135D135NGatAat4646AY.40.000072
ORF1ab/nsp3135D135NGatAat4545AY.440.000274
ORF1ab/nsp3135D135YGatTat3737AY.610.003877
ORF1ab/nsp3135D135DgaTgaC3636AY.30.000358
ORF1ab/nsp3135D135YGatTat3030AY.290.000473
ORF1ab/nsp3135D135NGatAat3030AY.320.015974
ORF1ab/nsp3135D135DgaTgaC3030B.1.2340.003958
ORF1ab/nsp3135D135DgaTgaC2929AY.430.000128
ORF1ab/nsp3135D135DgaTgaC2929B.1.617.20.000109
ORF1ab/nsp3135D135NGatAat2828B.1.1.70.000025
ORF1ab/nsp3135D135YGatTat2525AY.98.10.001211
ORF1ab/nsp3135D135VgAtgTt2424All0.000005
ORF1ab/nsp3135D135GgAtgGt2323B.1.4290.000541
ORF1ab/nsp3135D135YGatTat2020B.1.5260.00047
ORF1ab/nsp3135D135DgaTgaC1919AY.440.000116
ORF1ab/nsp3135D135YGatTat1919B.1.10.000345
ORF1ab/nsp3135D135YGatTat1919B.1.1.2220.003876
ORF1ab/nsp3135D135EgaTgaA1118All0.000002
ORF1ab/nsp3135D135EgaTgaG718All0.000001
ORF1ab/nsp3135D135delGAT---1818AY.40.000028
ORF1ab/nsp3135D135YGatTat1818AY.440.00011
ORF1ab/nsp3135D135GgAtgGt1818B.10.000165
ORF1ab/nsp3135D135YGatTat1616AY.1030.000099
ORF1ab/nsp3135D135YGatTat1616AY.30.000159
ORF1ab/nsp3135D135HGatCat1515All0.000003
ORF1ab/nsp3135D135AgAtgCt1415AY.250.000084
ORF1ab/nsp3135D135AgATgCA115AY.250.000006
ORF1ab/nsp3135D135NGatAat1515B.1.1.3180.004526
ORF1ab/nsp3135D135YGatTat1515B.1.160.280.04386
ORF1ab/nsp3135D135GgAtgGt1414AY.40.000022
ORF1ab/nsp3135D135DgaTgaC1313AY.1030.000081
ORF1ab/nsp3135D135YGatTat1313AY.360.001927
ORF1ab/nsp3135D135GgAtgGt1313AY.420.000523
ORF1ab/nsp3135D135YGatTat1212AY.1020.000318
ORF1ab/nsp3135D135YGatTat1111AY.50.000227
ORF1ab/nsp3135D135YGatTat1111B.1.390.042969
ORF1ab/nsp3135D135YGatTat1010A.10.002818
ORF1ab/nsp3135D135VgAtgTt1010AY.440.000061
ORF1ab/nsp3135D135AgAtgCt1010R.10.0009
ORF1ab/nsp3135D135YGatTat99AY.140.000792
ORF1ab/nsp3135D135YGatTat99AY.4.20.000195
ORF1ab/nsp3135D135YGatTat99AY.470.00028
ORF1ab/nsp3135D135YGatTat99P.10.000142
ORF1ab/nsp3135D135GgAtgGt99P.1.140.00043
ORF1ab/nsp3135D135YGatTat99P.20.00168
ORF1ab/nsp3135D135NGatAat88AY.260.000226
ORF1ab/nsp3135D135YGatTat88AY.460.000833
ORF1ab/nsp3135D135DgaTgaC88B.10.000073
ORF1ab/nsp3135D135NGatAat88B.10.000073
ORF1ab/nsp3135D135YGatTat88B.1.1.2140.000444
ORF1ab/nsp3135D135NGatAat88B.1.1.370.001543
ORF1ab/nsp3135D135YGatTat88B.1.3510.000238
ORF1ab/nsp3135D135YGatTat77AY.130.001127
ORF1ab/nsp3135D135DgaTgaC77AY.250.000042
ORF1ab/nsp3135D135YGatTat77AY.330.000467
ORF1ab/nsp3135D135GgAtgGt77AY.430.000031
ORF1ab/nsp3135D135YGatTat77B.1.1.630.002701
ORF1ab/nsp3135D135delGAT---77B.1.1.70.000006
ORF1ab/nsp3135D135YGatTat77B.1.4290.000165
ORF1ab/nsp3135D135YGatTat77B.1.617.10.000903
ORF1ab/nsp3135D135YGatTat66AY.1050.003859
ORF1ab/nsp3135D135YGatTat66AY.390.000148
ORF1ab/nsp3135D135GgAtgGt66AY.440.000037
ORF1ab/nsp3135D135GgAtgGt66AY.90.000406
ORF1ab/nsp3135D135YGatTat66B.1.1.330.002525
ORF1ab/nsp3135D135AgAtgCt66B.1.1.70.000005
ORF1ab/nsp3135D135GgAtgGt66B.1.1600.000187
ORF1ab/nsp3135D135del1Gat-at45All0.000001
ORF1ab/nsp3135D135del1gaTga-15All0
ORF1ab/nsp3135D135NGatAat55AY.1030.000031
ORF1ab/nsp3135D135YGatTat55AY.540.000477
ORF1ab/nsp3135D135YGatTat55B.1.1.1980.007342
ORF1ab/nsp3135D135YGatTat55B.1.1600.000156
ORF1ab/nsp3135D135DgaTgaC55B.1.177.150.003155
ORF1ab/nsp3135D135YGatTat55B.1.360.00073
ORF1ab/nsp3135D135YGatTat55B.1.5610.001985
ORF1ab/nsp3135D135AgAtgCt55B.1.617.20.000019
ORF1ab/nsp3135D135NGatAat55B.1.617.20.000019
ORF1ab/nsp3135D135GgAtgGt45B.1.617.20.000015
ORF1ab/nsp3135D135GgATgGC15B.1.617.20.000004
ORF1ab/nsp3135D135YGatTat55C.10.011962
ORF1ab/nsp3135D135delGAT---440.222222
ORF1ab/nsp3135D135GgAtgGt44AY.1020.000106
ORF1ab/nsp3135D135DgaTgaC44AY.1020.000106
ORF1ab/nsp3135D135YGatTat44AY.150.008889
ORF1ab/nsp3135D135YGatTat44AY.210.00759
ORF1ab/nsp3135D135GgAtgGt44AY.250.000024
ORF1ab/nsp3135D135YGatTat44AY.250.000024
ORF1ab/nsp3135D135YGatTat44AY.260.000113
ORF1ab/nsp3135D135NGatAat44AY.30.00004
ORF1ab/nsp3135D135AgAtgCt44AY.390.000099
ORF1ab/nsp3135D135YGatTat44AY.46.60.000289
ORF1ab/nsp3135D135YGatTat44AY.60.000165
ORF1ab/nsp3135D135YGatTat44AY.690.000747
ORF1ab/nsp3135D135YGatTat44AY.750.000224
ORF1ab/nsp3135D135delGAT---44B.10.000037
ORF1ab/nsp3135D135GgAtgGt44B.1.1.1530.004381
ORF1ab/nsp3135D135YGatTat44B.1.1.280.001245
ORF1ab/nsp3135D135YGatTat44B.1.1.3060.001754
ORF1ab/nsp3135D135YGatTat44B.1.1.3480.003185
ORF1ab/nsp3135D135DgaTgaC44B.1.1770.000053
ORF1ab/nsp3135D135YGatTat44B.1.177.150.002524
ORF1ab/nsp3135D135YGatTat44B.1.2420.075472
ORF1ab/nsp3135D135DgaTgaC44B.1.258.170.000416
ORF1ab/nsp3135D135DgaTgaC44B.1.4290.000094
ORF1ab/nsp3135D135YGatTat44B.1.4500.045455
ORF1ab/nsp3135D135GgAtgGt44P.20.000747
ORF1ab/nsp3135D135YGatTat44Q.80.00066
ORF1ab/nsp3135D135YGatTat33AY.1000.000138
ORF1ab/nsp3135D135GgAtgGt33AY.1030.000019
ORF1ab/nsp3135D135YGatTat33AY.1170.000254
ORF1ab/nsp3135D135GgAtgGt33AY.1180.000188
ORF1ab/nsp3135D135DgaTgaC33AY.1200.000112
ORF1ab/nsp3135D135NGatAat33AY.1200.000112
ORF1ab/nsp3135D135YGatTat33AY.230.000209
ORF1ab/nsp3135D135DgaTgaC33AY.290.000047
ORF1ab/nsp3135D135YGatTat33AY.3.10.000256
ORF1ab/nsp3135D135YGatTat33AY.39.10.000119
ORF1ab/nsp3135D135YGatTat33AY.9.20.00011
ORF1ab/nsp3135D135EgaTgaA33B.10.000027
ORF1ab/nsp3135D135AgAtgCt23B.10.000018
ORF1ab/nsp3135D135AgATgCA13B.10.000009
ORF1ab/nsp3135D135DgaTgaC33B.1.10.000054
ORF1ab/nsp3135D135NGatAat33B.1.10.000054
ORF1ab/nsp3135D135YGatTat33B.1.1.1530.003286
ORF1ab/nsp3135D135DgaTgaC33B.1.1.1760.001318
ORF1ab/nsp3135D135YGatTat33B.1.1.2200.005576
ORF1ab/nsp3135D135YGatTat33B.1.1.270.016949
ORF1ab/nsp3135D135delGAT---33B.1.1.330.001263
ORF1ab/nsp3135D135HGatCat33B.1.1.70.000003
ORF1ab/nsp3135D135YGatTat33B.1.177.750.003122
ORF1ab/nsp3135D135GgAtgGt33B.1.20.000026
ORF1ab/nsp3135D135DgaTgaC33B.1.20.000026
ORF1ab/nsp3135D135DgaTgaC33B.1.3510.000089
ORF1ab/nsp3135D135YGatTat33B.1.5380.024194
ORF1ab/nsp3135D135delGAT---33B.1.5750.00091
ORF1ab/nsp3135D135NGatAat33B.1.6090.001438
ORF1ab/nsp3135D135VgAtgTt33B.1.617.20.000011
ORF1ab/nsp3135D135YGatTat33B.1.6370.000219
ORF1ab/nsp3135D135YGatTat33B.400.001093
ORF1ab/nsp3135D135GgAtgGt33C.300.005181
ORF1ab/nsp3135D135YGatTat33D.20.000225
ORF1ab/nsp3135D135GgAtgGt33P.1.100.000808
ORF1ab/nsp3135D135DgaTgaC33P.1.140.000143
ORF1ab/nsp3135D135GgAtgGt33P.30.004785
ORF1ab/nsp3135D135AgAtgCt220.111111
ORF1ab/nsp3135D135YGatTat220.111111
ORF1ab/nsp3135D135GgAtgGt220.111111
ORF1ab/nsp3135D135del2GAt--t22All0
ORF1ab/nsp3135D135HGatCat22AY.1030.000012
ORF1ab/nsp3135D135AgAtgCt22AY.1030.000012
ORF1ab/nsp3135D135DgaTgaC22AY.1130.000285
ORF1ab/nsp3135D135YGatTat22AY.1180.000125
ORF1ab/nsp3135D135YGatTat22AY.1190.000071
ORF1ab/nsp3135D135GgAtgGt22AY.1200.000074
ORF1ab/nsp3135D135YGatTat22AY.190.002281
ORF1ab/nsp3135D135DgaTgaC22AY.200.000078
ORF1ab/nsp3135D135delGAT---22AY.330.000134
ORF1ab/nsp3135D135YGatTat22AY.34.10.00102
ORF1ab/nsp3135D135YGatTat22AY.380.000999
ORF1ab/nsp3135D135HGatCat22AY.40.000003
ORF1ab/nsp3135D135YGatTat22AY.4.40.000818
ORF1ab/nsp3135D135YGatTat22AY.410.000588
ORF1ab/nsp3135D135delGAT---22AY.430.000009
ORF1ab/nsp3135D135NGatAat22AY.430.000009
ORF1ab/nsp3135D135AgATgCA12AY.430.000004
ORF1ab/nsp3135D135AgAtgCt12AY.430.000004
ORF1ab/nsp3135D135DgaTgaC22AY.460.000208
ORF1ab/nsp3135D135YGatTat22AY.46.40.000329
ORF1ab/nsp3135D135GgAtgGt22AY.470.000062
ORF1ab/nsp3135D135YGatTat22AY.530.000575
ORF1ab/nsp3135D135NGatAat22AY.620.000871
ORF1ab/nsp3135D135YGatTat22AY.670.000929
ORF1ab/nsp3135D135YGatTat22AY.70.000392
ORF1ab/nsp3135D135YGatTat22AY.740.000231
ORF1ab/nsp3135D135DgaTgaC22AY.910.001461
ORF1ab/nsp3135D135YGatTat22AY.980.000158
ORF1ab/nsp3135D135HGatCat22B.10.000018
ORF1ab/nsp3135D135delGAT---22B.1.10.000036
ORF1ab/nsp3135D135EgaTgaG12B.1.10.000018
ORF1ab/nsp3135D135EgaTgaA12B.1.10.000018
ORF1ab/nsp3135D135YGatTat22B.1.1.1350.00939
ORF1ab/nsp3135D135DgaTgaC22B.1.1.2400.00939
ORF1ab/nsp3135D135GgAtgGt22B.1.1.2890.004167
ORF1ab/nsp3135D135VgAtgTt22B.1.1.3060.000877
ORF1ab/nsp3135D135YGatTat22B.1.1.3110.000716
ORF1ab/nsp3135D135YGatTat22B.1.1.3220.017544
ORF1ab/nsp3135D135delGAT---22B.1.1.3480.001592
ORF1ab/nsp3135D135HGatCat22B.1.1.4160.00181
ORF1ab/nsp3135D135DgaTgaC22B.1.1.630.000772
ORF1ab/nsp3135D135EgaTgaA22B.1.1.70.000002
ORF1ab/nsp3135D135VgAtgTt22B.1.1.70.000002
ORF1ab/nsp3135D135YGatTat22B.1.1570.00597
ORF1ab/nsp3135D135AgAtgCt22B.1.1770.000026
ORF1ab/nsp3135D135YGatTat22B.1.177.310.022989
ORF1ab/nsp3135D135delGAT---22B.1.20.000018
ORF1ab/nsp3135D135del1Gat-at22B.1.20.000018
ORF1ab/nsp3135D135EgaTgaG12B.1.20.000009
ORF1ab/nsp3135D135EgaTgaA12B.1.20.000009
ORF1ab/nsp3135D135YGatTat22B.1.2340.000264
ORF1ab/nsp3135D135GgAtgGt22B.1.2580.000133
ORF1ab/nsp3135D135YGatTat22B.1.3320.006993
ORF1ab/nsp3135D135YGatTat22B.1.4000.000858
ORF1ab/nsp3135D135YGatTat22B.1.4700.002809
ORF1ab/nsp3135D135YGatTat22B.1.5250.000226
ORF1ab/nsp3135D135YGatTat22B.1.5950.000522
ORF1ab/nsp3135D135DgaTgaC22B.1.5960.000174
ORF1ab/nsp3135D135DgaTgaC22B.1.596.10.018692
ORF1ab/nsp3135D135GgAtgGt22B.400.000729
ORF1ab/nsp3135D135NGatAat22C.370.000232
ORF1ab/nsp3135D135YGatTat22L.20.022727
ORF1ab/nsp3135D135delGAT---22N.60.014184
ORF1ab/nsp3135D135GgAtgGt22P.10.000032
ORF1ab/nsp3135D135AgAtgCt22P.1.140.000096
ORF1ab/nsp3135D135YGatTat22P.1.70.000639
ORF1ab/nsp3135D135VgAtgTt22P.20.000373
ORF1ab/nsp3135D135AgAtgCt22Q.10.000253
ORF1ab/nsp3135D135YGatTat22Q.30.00029
ORF1ab/nsp3135D135NGatAat110.055556
ORF1ab/nsp3135D135EgaTgaA11A0.000387
ORF1ab/nsp3135D135DgaTgaC11A0.000387
ORF1ab/nsp3135D135GgAtgGt11A.2.50.000499
ORF1ab/nsp3135D135AgAtgCt11A.23.10.000704
ORF1ab/nsp3135D135EgaTgaG11A.60.005128
ORF1ab/nsp3135D135VgAtgTt11AD.20.000219
ORF1ab/nsp3135D135YGatTat11AD.20.000219
ORF1ab/nsp3135D135CGAtTGt11All0
ORF1ab/nsp3135D135RGAtCGt11All0
ORF1ab/nsp3135D135LGAtCTt11All0
ORF1ab/nsp3135D135delGAT---11AY.1000.000046
ORF1ab/nsp3135D135NGatAat11AY.1020.000027
ORF1ab/nsp3135D135delGAT---11AY.1030.000006
ORF1ab/nsp3135D135GgAtgGt11AY.1060.000335
ORF1ab/nsp3135D135YGatTat11AY.1090.00074
ORF1ab/nsp3135D135GgAtgGt11AY.1100.000113
ORF1ab/nsp3135D135YGatTat11AY.1160.000287
ORF1ab/nsp3135D135AgAtgCt11AY.1160.000287
ORF1ab/nsp3135D135DgaTgaC11AY.1190.000035
ORF1ab/nsp3135D135GgAtgGt11AY.1190.000035
ORF1ab/nsp3135D135YGatTat11AY.120.000316
ORF1ab/nsp3135D135YGatTat11AY.1200.000037
ORF1ab/nsp3135D135DgaTgaC11AY.120.20.001285
ORF1ab/nsp3135D135GgAtgGt11AY.140.000088
ORF1ab/nsp3135D135YGatTat11AY.16.10.00047
ORF1ab/nsp3135D135VgAtgTt11AY.200.000039
ORF1ab/nsp3135D135EgaTgaG11AY.200.000039
ORF1ab/nsp3135D135YGatTat11AY.240.000431
ORF1ab/nsp3135D135NGatAat11AY.250.000006
ORF1ab/nsp3135D135GgAtgGt11AY.260.000028
ORF1ab/nsp3135D135EgaTgaA11AY.270.000065
ORF1ab/nsp3135D135CGAtTGt11AY.290.000016
ORF1ab/nsp3135D135YGatTat11AY.29.10.000221
ORF1ab/nsp3135D135del2GAt--t11AY.30.00001
ORF1ab/nsp3135D135GgAtgGt11AY.30.00001
ORF1ab/nsp3135D135delGAT---11AY.300.000396
ORF1ab/nsp3135D135YGatTat11AY.320.000532
ORF1ab/nsp3135D135YGatTat11AY.370.000316
ORF1ab/nsp3135D135VgAtgTt11AY.390.000025
ORF1ab/nsp3135D135DgaTgaC11AY.390.000025
ORF1ab/nsp3135D135DgaTgaC11AY.39.10.00004
ORF1ab/nsp3135D135EgaTgaA11AY.39.10.00004
ORF1ab/nsp3135D135EgaTgaA11AY.40.000002
ORF1ab/nsp3135D135del1gaTga-11AY.40.000002
ORF1ab/nsp3135D135GgAtgGt11AY.4.20.000022
ORF1ab/nsp3135D135delGAT---11AY.4.20.000022
ORF1ab/nsp3135D135AgAtgCt11AY.4.20.000022
ORF1ab/nsp3135D135NGatAat11AY.4.20.000022
ORF1ab/nsp3135D135YGatTat11AY.4.2.10.000149
ORF1ab/nsp3135D135YGatTat11AY.4.50.000107
ORF1ab/nsp3135D135delGAT---11AY.4.50.000107
ORF1ab/nsp3135D135del1Gat-at11AY.430.000004
ORF1ab/nsp3135D135HGatCat11AY.440.000006
ORF1ab/nsp3135D135DgaTgaC11AY.50.000021
ORF1ab/nsp3135D135YGatTat11AY.5.30.000337
ORF1ab/nsp3135D135YGatTat11AY.5.40.000277
ORF1ab/nsp3135D135DgaTgaC11AY.530.000288
ORF1ab/nsp3135D135NGatAat11AY.540.000095
ORF1ab/nsp3135D135DgaTgaC11AY.550.000917
ORF1ab/nsp3135D135DgaTgaC11AY.590.00053
ORF1ab/nsp3135D135DgaTgaC11AY.60.000041
ORF1ab/nsp3135D135GgAtgGt11AY.610.000105
ORF1ab/nsp3135D135YGatTat11AY.620.000436
ORF1ab/nsp3135D135NGatAat11AY.670.000464
ORF1ab/nsp3135D135YGatTat11AY.7.10.000113
ORF1ab/nsp3135D135DgaTgaC11AY.7.20.000559
ORF1ab/nsp3135D135YGatTat11AY.710.000475
ORF1ab/nsp3135D135DgaTgaC11AY.750.000056
ORF1ab/nsp3135D135YGatTat11AY.75.10.00018
ORF1ab/nsp3135D135GgAtgGt11AY.75.10.00018
ORF1ab/nsp3135D135del2GAt--t11AY.840.000437
ORF1ab/nsp3135D135YGatTat11AY.840.000437
ORF1ab/nsp3135D135YGatTat11AY.90.000068
ORF1ab/nsp3135D135AgAtgCt11AY.90.000068
ORF1ab/nsp3135D135YGatTat11AY.9.10.000084
ORF1ab/nsp3135D135YGatTat11AY.9.2.10.001976
ORF1ab/nsp3135D135DgaTgaC11AY.920.000287
ORF1ab/nsp3135D135YGatTat11AY.920.000287
ORF1ab/nsp3135D135NGatAat11AY.920.000287
ORF1ab/nsp3135D135GgAtgGt11AY.98.10.000048
ORF1ab/nsp3135D135delGAT---11AY.990.001049
ORF1ab/nsp3135D135YGatTat11AY.99.20.000092
ORF1ab/nsp3135D135DgaTgaC11B0.000128
ORF1ab/nsp3135D135GgAtgGt11B0.000128
ORF1ab/nsp3135D135LGAtCTt11B.10.000009
ORF1ab/nsp3135D135HGatCat11B.1.10.000018
ORF1ab/nsp3135D135AgAtgCt11B.1.10.000018
ORF1ab/nsp3135D135delGAT---11B.1.1.1450.037037
ORF1ab/nsp3135D135GgAtgGt11B.1.1.2200.001859
ORF1ab/nsp3135D135GgAtgGt11B.1.1.2220.000204
ORF1ab/nsp3135D135YGatTat11B.1.1.2410.00207
ORF1ab/nsp3135D135YGatTat11B.1.1.3010.001179
ORF1ab/nsp3135D135del1Gat-at11B.1.1.3060.000438
ORF1ab/nsp3135D135YGatTat11B.1.1.3260.001761
ORF1ab/nsp3135D135NGatAat11B.1.1.3260.001761
ORF1ab/nsp3135D135NGatAat11B.1.1.3480.000796
ORF1ab/nsp3135D135YGatTat11B.1.1.390.00051
ORF1ab/nsp3135D135YGatTat11B.1.1.4190.007407
ORF1ab/nsp3135D135YGatTat11B.1.1.4200.001006
ORF1ab/nsp3135D135AgAtgCt11B.1.1.500.000679
ORF1ab/nsp3135D135DgaTgaC11B.1.1.5250.005464
ORF1ab/nsp3135D135YGatTat11B.1.1.5260.003546
ORF1ab/nsp3135D135RGAtCGt11B.1.1.70.000001
ORF1ab/nsp3135D135YGatTat11B.1.1.700.000341
ORF1ab/nsp3135D135YGatTat11B.1.1030.019231
ORF1ab/nsp3135D135YGatTat11B.1.1270.002198
ORF1ab/nsp3135D135NGatAat11B.1.1670.007812
ORF1ab/nsp3135D135GgAtgGt11B.1.1770.000013
ORF1ab/nsp3135D135HGatCat11B.1.1770.000013
ORF1ab/nsp3135D135DgaTgaC11B.1.177.190.001431
ORF1ab/nsp3135D135YGatTat11B.1.177.190.001431
ORF1ab/nsp3135D135NGatAat11B.1.177.530.002392
ORF1ab/nsp3135D135YGatTat11B.1.177.560.000668
ORF1ab/nsp3135D135NGatAat11B.1.177.570.000281
ORF1ab/nsp3135D135YGatTat11B.1.177.720.00339
ORF1ab/nsp3135D135GgAtgGt11B.1.177.820.000477
ORF1ab/nsp3135D135YGatTat11B.1.177.850.005435
ORF1ab/nsp3135D135YGatTat11B.1.177.860.000183
ORF1ab/nsp3135D135EgaTgaG11B.1.177.860.000183
ORF1ab/nsp3135D135NGatAat11B.1.177.860.000183
ORF1ab/nsp3135D135AgAtgCt11B.1.20.000009
ORF1ab/nsp3135D135VgAtgTt11B.1.20.000009
ORF1ab/nsp3135D135HGatCat11B.1.20.000009
ORF1ab/nsp3135D135NGatAat11B.1.2210.000071
ORF1ab/nsp3135D135YGatTat11B.1.2430.00007
ORF1ab/nsp3135D135DgaTgaC11B.1.2430.00007
ORF1ab/nsp3135D135DgaTgaC11B.1.2580.000067
ORF1ab/nsp3135D135YGatTat11B.1.2580.000067
ORF1ab/nsp3135D135GgAtgGt11B.1.3110.000275
ORF1ab/nsp3135D135YGatTat11B.1.3110.000275
ORF1ab/nsp3135D135delGAT---11B.1.3510.00003
ORF1ab/nsp3135D135GgAtgGt11B.1.360.000146
ORF1ab/nsp3135D135NGatAat11B.1.36.290.000517
ORF1ab/nsp3135D135DgaTgaC11B.1.36.290.000517
ORF1ab/nsp3135D135AgAtgCt11B.1.36.310.001751
ORF1ab/nsp3135D135YGatTat11B.1.36.80.001
ORF1ab/nsp3135D135YGatTat11B.1.3910.001127
ORF1ab/nsp3135D135YGatTat11B.1.4050.012346
ORF1ab/nsp3135D135DgaTgaC11B.1.4160.001269
ORF1ab/nsp3135D135delGAT---11B.1.416.10.001563
ORF1ab/nsp3135D135YGatTat11B.1.4270.00005
ORF1ab/nsp3135D135delGAT---11B.1.4290.000024
ORF1ab/nsp3135D135NGatAat11B.1.4290.000024
ORF1ab/nsp3135D135NGatAat11B.1.4520.013699
ORF1ab/nsp3135D135YGatTat11B.1.4620.007246
ORF1ab/nsp3135D135YGatTat11B.1.466.20.000391
ORF1ab/nsp3135D135YGatTat11B.1.4800.002488
ORF1ab/nsp3135D135YGatTat11B.1.4970.000315
ORF1ab/nsp3135D135YGatTat11B.1.5050.004386
ORF1ab/nsp3135D135NGatAat11B.1.5260.000024
ORF1ab/nsp3135D135VgAtgTt11B.1.5260.000024
ORF1ab/nsp3135D135delGAT---11B.1.5610.000397
ORF1ab/nsp3135D135AgAtgCt11B.1.5640.000426
ORF1ab/nsp3135D135YGatTat11B.1.5750.000303
ORF1ab/nsp3135D135YGatTat11B.1.5760.000907
ORF1ab/nsp3135D135YGatTat11B.1.5800.004065
ORF1ab/nsp3135D135YGatTat11B.1.5880.00091
ORF1ab/nsp3135D135DgaTgaC11B.1.6090.000479
ORF1ab/nsp3135D135YGatTat11B.1.6090.000479
ORF1ab/nsp3135D135EgaTgaG11B.1.6090.000479
ORF1ab/nsp3135D135delGAT---11B.1.617.20.000004
ORF1ab/nsp3135D135DgaTgaC11B.1.6190.000871
ORF1ab/nsp3135D135YGatTat11B.1.6250.002353
ORF1ab/nsp3135D135YGatTat11B.1.9.50.005682
ORF1ab/nsp3135D135YGatTat11C.350.000774
ORF1ab/nsp3135D135YGatTat11C.36.30.000567
ORF1ab/nsp3135D135YGatTat11C.370.000116
ORF1ab/nsp3135D135DgaTgaC11P.10.000016
ORF1ab/nsp3135D135NGatAat11P.10.000016
ORF1ab/nsp3135D135AgATgCA11P.10.000016
ORF1ab/nsp3135D135EgaTgaG11P.1.140.000048
ORF1ab/nsp3135D135GgAtgGt11P.1.70.000319
ORF1ab/nsp3135D135YGatTat11Q.10.000126
ORF1ab/nsp3135D135DgaTgaC11Q.10.000126
ORF1ab/nsp3135D135DgaTgaC11Q.40.000455
ORF1ab/nsp3135D135GgAtgGt11Q.80.000165
ORF1ab/nsp3135D135GgAtgGt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.