CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1347 & Codon = tTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31347C1347FC2165FnonsyntGttTt1235123516758-6760

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31347C1347FtGttTt12351235All0.000236
ORF1ab/nsp31347C1347FtGttTt551551AY.40.000858
ORF1ab/nsp31347C1347FtGttTt241241AD.10.99177
ORF1ab/nsp31347C1347FtGttTt7171AY.250.000427
ORF1ab/nsp31347C1347FtGttTt4040AY.30.000398
ORF1ab/nsp31347C1347FtGttTt3939B.1.1.70.000035
ORF1ab/nsp31347C1347FtGttTt3939B.1.617.20.000147
ORF1ab/nsp31347C1347FtGttTt2727AY.440.000164
ORF1ab/nsp31347C1347FtGttTt2323AY.1030.000143
ORF1ab/nsp31347C1347FtGttTt1414AY.1200.000521
ORF1ab/nsp31347C1347FtGttTt1212AY.430.000053
ORF1ab/nsp31347C1347FtGttTt99B.10.000082
ORF1ab/nsp31347C1347FtGttTt99B.1.1770.000119
ORF1ab/nsp31347C1347FtGttTt77AY.420.000282
ORF1ab/nsp31347C1347FtGttTt77B.1.1600.000218
ORF1ab/nsp31347C1347FtGttTt77B.1.20.000062
ORF1ab/nsp31347C1347FtGttTt77P.10.00011
ORF1ab/nsp31347C1347FtGttTt66AY.1190.000212
ORF1ab/nsp31347C1347FtGttTt55AY.330.000334
ORF1ab/nsp31347C1347FtGttTt55AY.4.50.000537
ORF1ab/nsp31347C1347FtGttTt55AY.50.000103
ORF1ab/nsp31347C1347FtGttTt55B.1.1.10.001633
ORF1ab/nsp31347C1347FtGttTt44AY.200.000155
ORF1ab/nsp31347C1347FtGttTt44AY.340.000388
ORF1ab/nsp31347C1347FtGttTt44AY.390.000099
ORF1ab/nsp31347C1347FtGttTt44B.1.1.5190.000159
ORF1ab/nsp31347C1347FtGttTt44B.1.2580.000266
ORF1ab/nsp31347C1347FtGttTt44B.1.6280.001409
ORF1ab/nsp31347C1347FtGttTt44R.10.00036
ORF1ab/nsp31347C1347FtGttTt33AY.99.20.000276
ORF1ab/nsp31347C1347FtGttTt33B.1.10.000054
ORF1ab/nsp31347C1347FtGttTt33B.1.4260.003027
ORF1ab/nsp31347C1347FtGttTt33B.1.4290.000071
ORF1ab/nsp31347C1347FtGttTt22AY.1020.000053
ORF1ab/nsp31347C1347FtGttTt22AY.260.000057
ORF1ab/nsp31347C1347FtGttTt22AY.39.10.000079
ORF1ab/nsp31347C1347FtGttTt22AY.450.000243
ORF1ab/nsp31347C1347FtGttTt22AY.470.000062
ORF1ab/nsp31347C1347FtGttTt22AY.630.000774
ORF1ab/nsp31347C1347FtGttTt22AY.770.002255
ORF1ab/nsp31347C1347FtGttTt22AY.9.10.000167
ORF1ab/nsp31347C1347FtGttTt22B.1.177.100.001756
ORF1ab/nsp31347C1347FtGttTt22B.1.2210.000142
ORF1ab/nsp31347C1347FtGttTt22B.1.2430.000139
ORF1ab/nsp31347C1347FtGttTt22N.50.003534
ORF1ab/nsp31347C1347FtGttTt22P.1.140.000096
ORF1ab/nsp31347C1347FtGttTt110.055556
ORF1ab/nsp31347C1347FtGttTt11AY.1050.000643
ORF1ab/nsp31347C1347FtGttTt11AY.1110.000183
ORF1ab/nsp31347C1347FtGttTt11AY.1130.000142
ORF1ab/nsp31347C1347FtGttTt11AY.1180.000063
ORF1ab/nsp31347C1347FtGttTt11AY.160.00038
ORF1ab/nsp31347C1347FtGttTt11AY.230.00007
ORF1ab/nsp31347C1347FtGttTt11AY.3.10.000085
ORF1ab/nsp31347C1347FtGttTt11AY.360.000148
ORF1ab/nsp31347C1347FtGttTt11AY.4.20.000022
ORF1ab/nsp31347C1347FtGttTt11AY.460.000104
ORF1ab/nsp31347C1347FtGttTt11AY.46.40.000165
ORF1ab/nsp31347C1347FtGttTt11AY.46.60.000072
ORF1ab/nsp31347C1347FtGttTt11AY.500.000799
ORF1ab/nsp31347C1347FtGttTt11AY.60.000041
ORF1ab/nsp31347C1347FtGttTt11AY.610.000105
ORF1ab/nsp31347C1347FtGttTt11AY.670.000464
ORF1ab/nsp31347C1347FtGttTt11AY.70.000196
ORF1ab/nsp31347C1347FtGttTt11AY.740.000116
ORF1ab/nsp31347C1347FtGttTt11AY.890.004902
ORF1ab/nsp31347C1347FtGttTt11AY.90.000068
ORF1ab/nsp31347C1347FtGttTt11AY.9.20.000037
ORF1ab/nsp31347C1347FtGttTt11B.1.1.2910.000742
ORF1ab/nsp31347C1347FtGttTt11B.1.1.500.000679
ORF1ab/nsp31347C1347FtGttTt11B.1.1.5130.012346
ORF1ab/nsp31347C1347FtGttTt11B.1.1490.003425
ORF1ab/nsp31347C1347FtGttTt11B.1.177.650.000665
ORF1ab/nsp31347C1347FtGttTt11B.1.2100.002132
ORF1ab/nsp31347C1347FtGttTt11B.1.3490.000715
ORF1ab/nsp31347C1347FtGttTt11B.1.3510.00003
ORF1ab/nsp31347C1347FtGttTt11B.1.36.180.00042
ORF1ab/nsp31347C1347FtGttTt11B.1.4680.005714
ORF1ab/nsp31347C1347FtGttTt11B.1.5760.000907
ORF1ab/nsp31347C1347FtGttTt11B.1.6210.000089
ORF1ab/nsp31347C1347FtGttTt11B.290.003509
ORF1ab/nsp31347C1347FtGttTt11C.370.000116
ORF1ab/nsp31347C1347FtGttTt11D.20.000075
ORF1ab/nsp31347C1347FtGttTt11P.1.150.000232
ORF1ab/nsp31347C1347FtGttTt11P.1.160.000374
ORF1ab/nsp31347C1347FtGttTt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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