CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1347

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31347C1347WC2165WnonsyntgTtgG3044304416758-6760
ORF1ab/nsp31347C1347FC2165FnonsyntGttTt1235123516758-6760
ORF1ab/nsp31347C1347YC2165YnonsyntGttAt18618616758-6760
ORF1ab/nsp31347C1347delC2165deldelTGT---15615616758-6760
ORF1ab/nsp31347C1347CC2165CsyntgTtgC666616758-6760
ORF1ab/nsp31347C1347RC2165RnonsynTgtCgt25240.966758-6760
ORF1ab/nsp31347C1347RC2165RnonsynTgTAgA2510.046758-6760
ORF1ab/nsp31347C1347SC2165SnonsynTgtAgt13100.7692316758-6760
ORF1ab/nsp31347C1347SC2165SnonsyntGttCt1330.2307696758-6760
ORF1ab/nsp31347C1347XC2165XnonsyntgTtgA430.756758-6760
ORF1ab/nsp31347C1347XC2165XnonsyntGTtAG410.256758-6760
ORF1ab/nsp31347C1347GC2165GnonsynTgtGgt320.6666676758-6760
ORF1ab/nsp31347C1347GC2165GnonsynTgTGgG310.3333336758-6760
ORF1ab/nsp31347C1347del1C2165del1delTgt-gt2216758-6760
ORF1ab/nsp31347C1347EC2165EnonsynTGTGAG1116758-6760
ORF1ab/nsp31347C1347AC2165AnonsynTGTGCG1116758-6760

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31347C1347WtgTtgG30443044All0.000582
ORF1ab/nsp31347C1347WtgTtgG28222822AY.30.028069
ORF1ab/nsp31347C1347FtGttTt12351235All0.000236
ORF1ab/nsp31347C1347FtGttTt551551AY.40.000858
ORF1ab/nsp31347C1347FtGttTt241241AD.10.99177
ORF1ab/nsp31347C1347YtGttAt186186All0.000036
ORF1ab/nsp31347C1347delTGT---156156All0.00003
ORF1ab/nsp31347C1347FtGttTt7171AY.250.000427
ORF1ab/nsp31347C1347delTGT---6767B.1.1.70.00006
ORF1ab/nsp31347C1347CtgTtgC6666All0.000013
ORF1ab/nsp31347C1347WtgTtgG5858AY.1100.006536
ORF1ab/nsp31347C1347FtGttTt4040AY.30.000398
ORF1ab/nsp31347C1347FtGttTt3939B.1.1.70.000035
ORF1ab/nsp31347C1347FtGttTt3939B.1.617.20.000147
ORF1ab/nsp31347C1347YtGttAt3737AY.250.000223
ORF1ab/nsp31347C1347WtgTtgG3030AY.1170.002535
ORF1ab/nsp31347C1347FtGttTt2727AY.440.000164
ORF1ab/nsp31347C1347WtgTtgG2626AY.250.000156
ORF1ab/nsp31347C1347RTgtCgt2425All0.000005
ORF1ab/nsp31347C1347RTgTAgA125All0
ORF1ab/nsp31347C1347WtgTtgG2525B.1.617.20.000094
ORF1ab/nsp31347C1347FtGttTt2323AY.1030.000143
ORF1ab/nsp31347C1347YtGttAt2121AY.98.10.001017
ORF1ab/nsp31347C1347YtGttAt1919AY.1030.000118
ORF1ab/nsp31347C1347YtGttAt1717AY.40.000026
ORF1ab/nsp31347C1347delTGT---1616B.1.1770.000211
ORF1ab/nsp31347C1347FtGttTt1414AY.1200.000521
ORF1ab/nsp31347C1347STgtAgt1013All0.000002
ORF1ab/nsp31347C1347StGttCt313All0.000001
ORF1ab/nsp31347C1347FtGttTt1212AY.430.000053
ORF1ab/nsp31347C1347CtgTtgC1212B.1.1.70.000011
ORF1ab/nsp31347C1347RTgtCgt1212B.1.1.70.000011
ORF1ab/nsp31347C1347YtGttAt1111AY.9.20.000404
ORF1ab/nsp31347C1347YtGttAt1010AY.440.000061
ORF1ab/nsp31347C1347WtgTtgG1010AY.46.10.010267
ORF1ab/nsp31347C1347WtgTtgG99AY.990.009444
ORF1ab/nsp31347C1347FtGttTt99B.10.000082
ORF1ab/nsp31347C1347FtGttTt99B.1.1770.000119
ORF1ab/nsp31347C1347delTGT---88AY.40.000012
ORF1ab/nsp31347C1347WtgTtgG88AY.70.001568
ORF1ab/nsp31347C1347YtGttAt88B.1.617.20.00003
ORF1ab/nsp31347C1347YtGttAt77AY.1200.00026
ORF1ab/nsp31347C1347FtGttTt77AY.420.000282
ORF1ab/nsp31347C1347CtgTtgC77B.1.10.000127
ORF1ab/nsp31347C1347FtGttTt77B.1.1600.000218
ORF1ab/nsp31347C1347FtGttTt77B.1.20.000062
ORF1ab/nsp31347C1347FtGttTt77P.10.00011
ORF1ab/nsp31347C1347FtGttTt66AY.1190.000212
ORF1ab/nsp31347C1347CtgTtgC66AY.40.000009
ORF1ab/nsp31347C1347YtGttAt66AY.4.20.00013
ORF1ab/nsp31347C1347delTGT---66AY.430.000027
ORF1ab/nsp31347C1347WtgTtgG66AY.98.10.000291
ORF1ab/nsp31347C1347WtgTtgG55AY.1190.000177
ORF1ab/nsp31347C1347FtGttTt55AY.330.000334
ORF1ab/nsp31347C1347delTGT---55AY.4.50.000537
ORF1ab/nsp31347C1347FtGttTt55AY.4.50.000537
ORF1ab/nsp31347C1347YtGttAt55AY.430.000022
ORF1ab/nsp31347C1347FtGttTt55AY.50.000103
ORF1ab/nsp31347C1347FtGttTt55B.1.1.10.001633
ORF1ab/nsp31347C1347YtGttAt55B.1.1.70.000004
ORF1ab/nsp31347C1347delTGT---55B.1.617.20.000019
ORF1ab/nsp31347C1347CtgTtgC55P.10.000079
ORF1ab/nsp31347C1347XtgTtgA34All0.000001
ORF1ab/nsp31347C1347XtGTtAG14All0
ORF1ab/nsp31347C1347FtGttTt44AY.200.000155
ORF1ab/nsp31347C1347YtGttAt44AY.200.000155
ORF1ab/nsp31347C1347FtGttTt44AY.340.000388
ORF1ab/nsp31347C1347FtGttTt44AY.390.000099
ORF1ab/nsp31347C1347WtgTtgG44AY.50.000083
ORF1ab/nsp31347C1347WtgTtgG44AY.920.001149
ORF1ab/nsp31347C1347FtGttTt44B.1.1.5190.000159
ORF1ab/nsp31347C1347CtgTtgC44B.1.1770.000053
ORF1ab/nsp31347C1347FtGttTt44B.1.2580.000266
ORF1ab/nsp31347C1347FtGttTt44B.1.6280.001409
ORF1ab/nsp31347C1347FtGttTt44R.10.00036
ORF1ab/nsp31347C1347GTgtGgt23All0
ORF1ab/nsp31347C1347GTgTGgG13All0
ORF1ab/nsp31347C1347YtGttAt33AY.1000.000138
ORF1ab/nsp31347C1347WtgTtgG33AY.230.000209
ORF1ab/nsp31347C1347CtgTtgC33AY.250.000018
ORF1ab/nsp31347C1347CtgTtgC33AY.430.000013
ORF1ab/nsp31347C1347WtgTtgG33AY.820.004071
ORF1ab/nsp31347C1347WtgTtgG33AY.840.001312
ORF1ab/nsp31347C1347FtGttTt33AY.99.20.000276
ORF1ab/nsp31347C1347delTGT---33B.10.000027
ORF1ab/nsp31347C1347FtGttTt33B.1.10.000054
ORF1ab/nsp31347C1347STgtAgt33B.1.1.70.000003
ORF1ab/nsp31347C1347FtGttTt33B.1.4260.003027
ORF1ab/nsp31347C1347FtGttTt33B.1.4290.000071
ORF1ab/nsp31347C1347CtgTtgC33B.1.617.20.000011
ORF1ab/nsp31347C1347del1Tgt-gt22All0
ORF1ab/nsp31347C1347WtgTtgG22AY.1000.000092
ORF1ab/nsp31347C1347FtGttTt22AY.1020.000053
ORF1ab/nsp31347C1347WtgTtgG22AY.1030.000012
ORF1ab/nsp31347C1347YtGttAt22AY.1090.001479
ORF1ab/nsp31347C1347WtgTtgG22AY.1140.000462
ORF1ab/nsp31347C1347WtgTtgG22AY.1160.000574
ORF1ab/nsp31347C1347CtgTtgC22AY.1180.000125
ORF1ab/nsp31347C1347delTGT---22AY.250.000012
ORF1ab/nsp31347C1347FtGttTt22AY.260.000057
ORF1ab/nsp31347C1347WtgTtgG22AY.320.001065
ORF1ab/nsp31347C1347FtGttTt22AY.39.10.000079
ORF1ab/nsp31347C1347GTgtGgt22AY.40.000003
ORF1ab/nsp31347C1347YtGttAt22AY.4.50.000215
ORF1ab/nsp31347C1347FtGttTt22AY.450.000243
ORF1ab/nsp31347C1347WtgTtgG22AY.460.000208
ORF1ab/nsp31347C1347FtGttTt22AY.470.000062
ORF1ab/nsp31347C1347WtgTtgG22AY.540.000191
ORF1ab/nsp31347C1347CtgTtgC22AY.540.000191
ORF1ab/nsp31347C1347FtGttTt22AY.630.000774
ORF1ab/nsp31347C1347FtGttTt22AY.770.002255
ORF1ab/nsp31347C1347FtGttTt22AY.9.10.000167
ORF1ab/nsp31347C1347YtGttAt22AY.99.20.000184
ORF1ab/nsp31347C1347CtgTtgC22B.10.000018
ORF1ab/nsp31347C1347delTGT---22B.1.10.000036
ORF1ab/nsp31347C1347STgtAgt12B.1.10.000018
ORF1ab/nsp31347C1347StGttCt12B.1.10.000018
ORF1ab/nsp31347C1347RTgtCgt12B.1.10.000018
ORF1ab/nsp31347C1347RTgTAgA12B.1.10.000018
ORF1ab/nsp31347C1347FtGttTt22B.1.177.100.001756
ORF1ab/nsp31347C1347delTGT---22B.1.177.160.001329
ORF1ab/nsp31347C1347delTGT---22B.1.177.560.001335
ORF1ab/nsp31347C1347FtGttTt22B.1.2210.000142
ORF1ab/nsp31347C1347FtGttTt22B.1.2430.000139
ORF1ab/nsp31347C1347CtgTtgC22B.1.438.10.000215
ORF1ab/nsp31347C1347StGttCt12B.1.617.20.000004
ORF1ab/nsp31347C1347STgtAgt12B.1.617.20.000004
ORF1ab/nsp31347C1347STgtAgt22B.1.6370.000146
ORF1ab/nsp31347C1347YtGttAt22N.40.008511
ORF1ab/nsp31347C1347FtGttTt22N.50.003534
ORF1ab/nsp31347C1347FtGttTt22P.1.140.000096
ORF1ab/nsp31347C1347FtGttTt110.055556
ORF1ab/nsp31347C1347YtGttAt110.055556
ORF1ab/nsp31347C1347delTGT---11AD.20.000219
ORF1ab/nsp31347C1347delTGT---11AH.30.003802
ORF1ab/nsp31347C1347ATGTGCG11All0
ORF1ab/nsp31347C1347ETGTGAG11All0
ORF1ab/nsp31347C1347delTGT---11AY.1000.000046
ORF1ab/nsp31347C1347YtGttAt11AY.1020.000027
ORF1ab/nsp31347C1347WtgTtgG11AY.1020.000027
ORF1ab/nsp31347C1347CtgTtgC11AY.1020.000027
ORF1ab/nsp31347C1347CtgTtgC11AY.1030.000006
ORF1ab/nsp31347C1347YtGttAt11AY.1040.001984
ORF1ab/nsp31347C1347WtgTtgG11AY.1050.000643
ORF1ab/nsp31347C1347FtGttTt11AY.1050.000643
ORF1ab/nsp31347C1347FtGttTt11AY.1110.000183
ORF1ab/nsp31347C1347FtGttTt11AY.1130.000142
ORF1ab/nsp31347C1347YtGttAt11AY.1130.000142
ORF1ab/nsp31347C1347FtGttTt11AY.1180.000063
ORF1ab/nsp31347C1347WtgTtgG11AY.1180.000063
ORF1ab/nsp31347C1347delTGT---11AY.1200.000037
ORF1ab/nsp31347C1347CtgTtgC11AY.1210.000135
ORF1ab/nsp31347C1347RTgtCgt11AY.140.000088
ORF1ab/nsp31347C1347FtGttTt11AY.160.00038
ORF1ab/nsp31347C1347YtGttAt11AY.16.10.00047
ORF1ab/nsp31347C1347delTGT---11AY.190.00114
ORF1ab/nsp31347C1347RTgtCgt11AY.200.000039
ORF1ab/nsp31347C1347CtgTtgC11AY.230.00007
ORF1ab/nsp31347C1347FtGttTt11AY.230.00007
ORF1ab/nsp31347C1347YtGttAt11AY.230.00007
ORF1ab/nsp31347C1347XtGTtAG11AY.250.000006
ORF1ab/nsp31347C1347STgtAgt11AY.250.000006
ORF1ab/nsp31347C1347YtGttAt11AY.260.000028
ORF1ab/nsp31347C1347RTgtCgt11AY.290.000016
ORF1ab/nsp31347C1347CtgTtgC11AY.290.000016
ORF1ab/nsp31347C1347YtGttAt11AY.30.00001
ORF1ab/nsp31347C1347FtGttTt11AY.3.10.000085
ORF1ab/nsp31347C1347WtgTtgG11AY.340.000097
ORF1ab/nsp31347C1347delTGT---11AY.360.000148
ORF1ab/nsp31347C1347FtGttTt11AY.360.000148
ORF1ab/nsp31347C1347YtGttAt11AY.360.000148
ORF1ab/nsp31347C1347delTGT---11AY.390.000025
ORF1ab/nsp31347C1347WtgTtgG11AY.390.000025
ORF1ab/nsp31347C1347STgtAgt11AY.40.000002
ORF1ab/nsp31347C1347WtgTtgG11AY.40.000002
ORF1ab/nsp31347C1347RTgtCgt11AY.40.000002
ORF1ab/nsp31347C1347XtgTtgA11AY.40.000002
ORF1ab/nsp31347C1347CtgTtgC11AY.4.20.000022
ORF1ab/nsp31347C1347FtGttTt11AY.4.20.000022
ORF1ab/nsp31347C1347WtgTtgG11AY.410.000294
ORF1ab/nsp31347C1347WtgTtgG11AY.420.00004
ORF1ab/nsp31347C1347RTgtCgt11AY.430.000004
ORF1ab/nsp31347C1347WtgTtgG11AY.440.000006
ORF1ab/nsp31347C1347FtGttTt11AY.460.000104
ORF1ab/nsp31347C1347YtGttAt11AY.460.000104
ORF1ab/nsp31347C1347delTGT---11AY.46.20.000635
ORF1ab/nsp31347C1347YtGttAt11AY.46.40.000165
ORF1ab/nsp31347C1347FtGttTt11AY.46.40.000165
ORF1ab/nsp31347C1347FtGttTt11AY.46.60.000072
ORF1ab/nsp31347C1347delTGT---11AY.50.000021
ORF1ab/nsp31347C1347FtGttTt11AY.500.000799
ORF1ab/nsp31347C1347WtgTtgG11AY.550.000917
ORF1ab/nsp31347C1347FtGttTt11AY.60.000041
ORF1ab/nsp31347C1347delTGT---11AY.60.000041
ORF1ab/nsp31347C1347delTGT---11AY.600.000938
ORF1ab/nsp31347C1347FtGttTt11AY.610.000105
ORF1ab/nsp31347C1347RTgtCgt11AY.610.000105
ORF1ab/nsp31347C1347YtGttAt11AY.640.000595
ORF1ab/nsp31347C1347delTGT---11AY.650.000533
ORF1ab/nsp31347C1347FtGttTt11AY.670.000464
ORF1ab/nsp31347C1347RTgtCgt11AY.680.000274
ORF1ab/nsp31347C1347FtGttTt11AY.70.000196
ORF1ab/nsp31347C1347del1Tgt-gt11AY.70.000196
ORF1ab/nsp31347C1347STgtAgt11AY.710.000475
ORF1ab/nsp31347C1347FtGttTt11AY.740.000116
ORF1ab/nsp31347C1347RTgtCgt11AY.740.000116
ORF1ab/nsp31347C1347delTGT---11AY.750.000056
ORF1ab/nsp31347C1347FtGttTt11AY.890.004902
ORF1ab/nsp31347C1347FtGttTt11AY.90.000068
ORF1ab/nsp31347C1347delTGT---11AY.90.000068
ORF1ab/nsp31347C1347CtgTtgC11AY.9.10.000084
ORF1ab/nsp31347C1347delTGT---11AY.9.10.000084
ORF1ab/nsp31347C1347FtGttTt11AY.9.20.000037
ORF1ab/nsp31347C1347delTGT---11AY.9.20.000037
ORF1ab/nsp31347C1347YtGttAt11AY.900.000684
ORF1ab/nsp31347C1347WtgTtgG11AY.910.00073
ORF1ab/nsp31347C1347WtgTtgG11AY.950.000761
ORF1ab/nsp31347C1347delTGT---11AY.99.10.001553
ORF1ab/nsp31347C1347CtgTtgC11AY.99.20.000092
ORF1ab/nsp31347C1347WtgTtgG11B0.000128
ORF1ab/nsp31347C1347YtGttAt11B.10.000009
ORF1ab/nsp31347C1347RTgtCgt11B.10.000009
ORF1ab/nsp31347C1347WtgTtgG11B.10.000009
ORF1ab/nsp31347C1347XtgTtgA11B.1.10.000018
ORF1ab/nsp31347C1347ETGTGAG11B.1.10.000018
ORF1ab/nsp31347C1347ATGTGCG11B.1.10.000018
ORF1ab/nsp31347C1347GTgTGgG11B.1.10.000018
ORF1ab/nsp31347C1347CtgTtgC11B.1.1.100.001115
ORF1ab/nsp31347C1347YtGttAt11B.1.1.2220.000204
ORF1ab/nsp31347C1347FtGttTt11B.1.1.2910.000742
ORF1ab/nsp31347C1347YtGttAt11B.1.1.3110.000358
ORF1ab/nsp31347C1347delTGT---11B.1.1.3110.000358
ORF1ab/nsp31347C1347delTGT---11B.1.1.3120.001912
ORF1ab/nsp31347C1347delTGT---11B.1.1.3480.000796
ORF1ab/nsp31347C1347delTGT---11B.1.1.3610.045455
ORF1ab/nsp31347C1347StGttCt11B.1.1.4090.002833
ORF1ab/nsp31347C1347delTGT---11B.1.1.4090.002833
ORF1ab/nsp31347C1347FtGttTt11B.1.1.500.000679
ORF1ab/nsp31347C1347FtGttTt11B.1.1.5130.012346
ORF1ab/nsp31347C1347CtgTtgC11B.1.1.5260.003546
ORF1ab/nsp31347C1347del1Tgt-gt11B.1.1.70.000001
ORF1ab/nsp31347C1347FtGttTt11B.1.1490.003425
ORF1ab/nsp31347C1347delTGT---11B.1.1600.000031
ORF1ab/nsp31347C1347RTgtCgt11B.1.160.90.007194
ORF1ab/nsp31347C1347delTGT---11B.1.177.150.000631
ORF1ab/nsp31347C1347delTGT---11B.1.177.180.00116
ORF1ab/nsp31347C1347delTGT---11B.1.177.40.000211
ORF1ab/nsp31347C1347delTGT---11B.1.177.60.000977
ORF1ab/nsp31347C1347FtGttTt11B.1.177.650.000665
ORF1ab/nsp31347C1347delTGT---11B.1.177.70.000165
ORF1ab/nsp31347C1347delTGT---11B.1.177.810.000189
ORF1ab/nsp31347C1347delTGT---11B.1.177.870.000728
ORF1ab/nsp31347C1347YtGttAt11B.1.20.000009
ORF1ab/nsp31347C1347YtGttAt11B.1.2010.005682
ORF1ab/nsp31347C1347FtGttTt11B.1.2100.002132
ORF1ab/nsp31347C1347CtgTtgC11B.1.214.10.02
ORF1ab/nsp31347C1347delTGT---11B.1.2210.000071
ORF1ab/nsp31347C1347YtGttAt11B.1.2210.000071
ORF1ab/nsp31347C1347YtGttAt11B.1.258.40.003448
ORF1ab/nsp31347C1347FtGttTt11B.1.3490.000715
ORF1ab/nsp31347C1347FtGttTt11B.1.3510.00003
ORF1ab/nsp31347C1347YtGttAt11B.1.3510.00003
ORF1ab/nsp31347C1347delTGT---11B.1.360.000146
ORF1ab/nsp31347C1347delTGT---11B.1.36.170.000494
ORF1ab/nsp31347C1347FtGttTt11B.1.36.180.00042
ORF1ab/nsp31347C1347RTgtCgt11B.1.4230.010204
ORF1ab/nsp31347C1347FtGttTt11B.1.4680.005714
ORF1ab/nsp31347C1347FtGttTt11B.1.5760.000907
ORF1ab/nsp31347C1347YtGttAt11B.1.5950.000261
ORF1ab/nsp31347C1347CtgTtgC11B.1.5960.000087
ORF1ab/nsp31347C1347YtGttAt11B.1.617.10.000129
ORF1ab/nsp31347C1347XtgTtgA11B.1.617.20.000004
ORF1ab/nsp31347C1347FtGttTt11B.1.6210.000089
ORF1ab/nsp31347C1347delTGT---11B.1.6210.000089
ORF1ab/nsp31347C1347delTGT---11B.1.6300.005236
ORF1ab/nsp31347C1347FtGttTt11B.290.003509
ORF1ab/nsp31347C1347CtgTtgC11B.400.000364
ORF1ab/nsp31347C1347delTGT---11B.400.000364
ORF1ab/nsp31347C1347YtGttAt11C.370.000116
ORF1ab/nsp31347C1347FtGttTt11C.370.000116
ORF1ab/nsp31347C1347FtGttTt11D.20.000075
ORF1ab/nsp31347C1347delTGT---11P.10.000016
ORF1ab/nsp31347C1347CtgTtgC11P.1.10.000318
ORF1ab/nsp31347C1347YtGttAt11P.1.140.000048
ORF1ab/nsp31347C1347FtGttTt11P.1.150.000232
ORF1ab/nsp31347C1347FtGttTt11P.1.160.000374
ORF1ab/nsp31347C1347delTGT---11Q.20.000613
ORF1ab/nsp31347C1347FtGttTt11Q.40.000455
ORF1ab/nsp31347C1347CtgTtgC11Q.80.000165