CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1334 | T1334I | T2152I | nonsyn | aCa | aTa | 2966 | 2964 | 0.999326 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334I | T2152I | nonsyn | aCA | aTT | 2966 | 2 | 0.000674309 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334T | T2152T | syn | acA | acC | 254 | 144 | 0.566929 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334T | T2152T | syn | acA | acG | 254 | 90 | 0.354331 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334T | T2152T | syn | acA | acT | 254 | 20 | 0.0787402 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334A | T2152A | nonsyn | Aca | Gca | 250 | 250 | 1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334del | T2152del | del | ACA | --- | 204 | 204 | 1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334del1 | T2152del1 | del | Aca | -ca | 82 | 79 | 0.963415 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334del1 | T2152del1 | del | aCa | a-a | 82 | 1 | 0.0121951 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334del1 | T2152del1 | del | ACA | -TT | 82 | 1 | 0.0121951 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334del1 | T2152del1 | del | acA | ac- | 82 | 1 | 0.0121951 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334K | T2152K | nonsyn | aCa | aAa | 26 | 23 | 0.884615 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334K | T2152K | nonsyn | aCA | aAG | 26 | 3 | 0.115385 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334S | T2152S | nonsyn | aCA | aGT | 10 | 5 | 0.5 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334S | T2152S | nonsyn | Aca | Tca | 10 | 4 | 0.4 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334S | T2152S | nonsyn | AcA | TcC | 10 | 1 | 0.1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334V | T2152V | nonsyn | ACa | GTa | 3 | 3 | 1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334R | T2152R | nonsyn | aCa | aGa | 3 | 3 | 1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334P | T2152P | nonsyn | Aca | Cca | 2 | 2 | 1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334F | T2152F | nonsyn | ACA | TTT | 1 | 1 | 1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334L | T2152L | nonsyn | ACa | TTa | 1 | 1 | 1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334C | T2152C | nonsyn | ACA | TGT | 1 | 1 | 1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334X | T2152X | nonsyn | ACa | TGa | 1 | 1 | 1 | 6719-6721 |
ORF1ab/nsp3 | 1334 | T1334del2 | T2152del2 | del | ACa | --a | 1 | 1 | 1 | 6719-6721 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2964 | 2966 | All | 0.000567 |
ORF1ab/nsp3 | 1334 | T1334I | aCA | aTT | 2 | 2966 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 590 | 590 | B.1.1.7 | 0.000528 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 291 | 291 | AY.47 | 0.009052 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 267 | 267 | AY.4 | 0.000416 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acC | 144 | 254 | All | 0.000028 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 90 | 254 | All | 0.000017 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 20 | 254 | All | 0.000004 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 250 | 250 | All | 0.000048 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 204 | 204 | All | 0.000039 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acC | 137 | 140 | B.1.1.7 | 0.000123 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 3 | 140 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 139 | 139 | AY.23 | 0.009695 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 96 | 96 | B.1.526 | 0.002256 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 86 | 86 | B.1.1.7 | 0.000077 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 84 | 85 | B.1.617.2 | 0.000316 |
ORF1ab/nsp3 | 1334 | T1334I | aCA | aTT | 1 | 85 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1334 | T1334del1 | Aca | -ca | 79 | 82 | All | 0.000015 |
ORF1ab/nsp3 | 1334 | T1334del1 | aCa | a-a | 1 | 82 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334del1 | ACA | -TT | 1 | 82 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334del1 | acA | ac- | 1 | 82 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 80 | 80 | B.1.2 | 0.000704 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 78 | 78 | B.1.1.7 | 0.00007 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 75 | 75 | AY.25 | 0.000451 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 75 | 75 | AY.43 | 0.000332 |
ORF1ab/nsp3 | 1334 | T1334del1 | Aca | -ca | 66 | 67 | B.1.1.7 | 0.000059 |
ORF1ab/nsp3 | 1334 | T1334del1 | acA | ac- | 1 | 67 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 64 | 64 | AY.44 | 0.00039 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 63 | 63 | B.6.8 | 0.520661 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 56 | 56 | B.1.1.519 | 0.002224 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 56 | 56 | P.1 | 0.000882 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 49 | 49 | AY.4.2 | 0.001063 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 44 | 44 | B.1.177 | 0.000579 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 41 | 41 | B.1 | 0.000376 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 39 | 39 | B.1.258.9 | 0.195 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 38 | 38 | AY.26 | 0.001076 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 31 | 31 | AY.25 | 0.000186 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 29 | 29 | B.1.1 | 0.000526 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 28 | 28 | AY.103 | 0.000174 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 28 | 28 | B.1.351.3 | 0.02454 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 27 | 27 | B.1.565 | 0.02188 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 23 | 26 | All | 0.000004 |
ORF1ab/nsp3 | 1334 | T1334K | aCA | aAG | 3 | 26 | All | 0.000001 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 23 | 23 | AY.98.1 | 0.001114 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 21 | 21 | B.1.429 | 0.000494 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 20 | 20 | AY.120 | 0.000744 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 20 | 20 | AY.4.2.1 | 0.00298 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 18 | 18 | B.1.1.317 | 0.00741 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 18 | 18 | B.1.36 | 0.002626 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 17 | 17 | B.1.1.306 | 0.007453 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 16 | 16 | AY.4.2 | 0.000347 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 14 | 14 | AY.3.1 | 0.001194 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 12 | 12 | B.1.243 | 0.000835 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 11 | 11 | AY.88 | 0.009726 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 11 | 11 | B.1.438.1 | 0.00118 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp3 | 1334 | T1334S | aCA | aGT | 5 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 1334 | T1334S | Aca | Tca | 4 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 1334 | T1334S | AcA | TcC | 1 | 10 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 10 | 10 | B.1.1.298 | 0.008621 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 10 | 10 | P.3 | 0.015949 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 9 | 9 | B.1.177.86 | 0.001651 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 8 | 8 | A | 0.003096 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 8 | 8 | AY.79 | 0.009685 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 8 | 8 | B.1.632 | 0.053691 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 8 | 8 | C.31 | 0.142857 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 7 | 7 | B.1.1.136 | 0.148936 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 7 | 7 | B.1.1.322 | 0.061404 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 7 | 7 | B.6 | 0.006369 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 4 | 6 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 2 | 6 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acC | 4 | 6 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 2 | 6 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 6 | 6 | B.1.621.1 | 0.003035 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 6 | 6 | B.1.625 | 0.014118 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 1334 | T1334R | aCa | aGa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1334 | T1334V | ACa | GTa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 3 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1334 | T1334I | aCA | aTT | 1 | 3 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | B.1.1.269 | 0.00406 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | B.1.1.452 | 0.333333 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | B.1.160.17 | 0.005102 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 3 | 3 | B.1.177.16 | 0.001993 |
ORF1ab/nsp3 | 1334 | T1334del1 | Aca | -ca | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp3 | 1334 | T1334del1 | Aca | -ca | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1334 | T1334K | aCA | aAG | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1334 | T1334S | AcA | TcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1334 | T1334S | Aca | Tca | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp3 | 1334 | T1334P | Aca | Cca | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.5.2 | 0.004926 |
ORF1ab/nsp3 | 1334 | T1334del1 | Aca | -ca | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.1.5 | 0.016667 |
ORF1ab/nsp3 | 1334 | T1334del1 | Aca | -ca | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.160.8 | 0.002577 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.36.34 | 0.042553 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.469 | 0.00722 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1334 | T1334P | Aca | Cca | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1334 | T1334T | acA | acC | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1334 | T1334del2 | ACa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334L | ACa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334C | ACA | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334X | ACa | TGa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334F | ACA | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp3 | 1334 | T1334S | Aca | Tca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1334 | T1334R | aCa | aGa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1334 | T1334S | aCA | aGT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1334 | T1334V | ACa | GTa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1334 | T1334S | Aca | Tca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1334 | T1334del1 | ACA | -TT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1334 | T1334S | aCA | aGT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1334 | T1334R | aCa | aGa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1334 | T1334X | ACa | TGa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1334 | T1334F | ACA | TTT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1334 | T1334C | ACA | TGT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1334 | T1334L | ACa | TTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1334 | T1334K | aCA | aAG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1334 | T1334V | ACa | GTa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1334 | T1334K | aCA | aAG | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1334 | T1334V | ACa | GTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1334 | T1334S | Aca | Tca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1334 | T1334P | Aca | Cca | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1334 | T1334del1 | aCa | a-a | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1334 | T1334del2 | ACa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.177.30 | 0.002513 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1334 | T1334del1 | Aca | -ca | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1334 | T1334S | aCA | aGT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1334 | T1334S | aCA | aGT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.328 | 0.03125 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 1334 | T1334R | aCa | aGa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1334 | T1334del1 | Aca | -ca | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1334 | T1334S | aCA | aGT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | C.34 | 0.037037 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1334 | T1334A | Aca | Gca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1334 | T1334T | acA | acG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1334 | T1334K | aCa | aAa | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1334 | T1334del1 | Aca | -ca | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1334 | T1334del | ACA | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 1334 | T1334I | aCa | aTa | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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