CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1333 & Codon = agC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31333S1333SS2151SsynagTagC11311316716-6718

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31333S1333SagTagC113113All0.000022
ORF1ab/nsp31333S1333SagTagC2020B.1.1.70.000018
ORF1ab/nsp31333S1333SagTagC1919C.370.002205
ORF1ab/nsp31333S1333SagTagC1212AY.40.000019
ORF1ab/nsp31333S1333SagTagC1111B.1.617.20.000041
ORF1ab/nsp31333S1333SagTagC1010B.1.20.000088
ORF1ab/nsp31333S1333SagTagC88AY.1190.000282
ORF1ab/nsp31333S1333SagTagC55AY.30.00005
ORF1ab/nsp31333S1333SagTagC55B.10.000046
ORF1ab/nsp31333S1333SagTagC22AY.1210.000271
ORF1ab/nsp31333S1333SagTagC22AY.260.000057
ORF1ab/nsp31333S1333SagTagC22B.1.1770.000026
ORF1ab/nsp31333S1333SagTagC22P.10.000032
ORF1ab/nsp31333S1333SagTagC11A0.000387
ORF1ab/nsp31333S1333SagTagC11A.280.002646
ORF1ab/nsp31333S1333SagTagC11AY.110.001339
ORF1ab/nsp31333S1333SagTagC11AY.23.10.000417
ORF1ab/nsp31333S1333SagTagC11AY.250.000006
ORF1ab/nsp31333S1333SagTagC11AY.390.000025
ORF1ab/nsp31333S1333SagTagC11AY.39.10.00004
ORF1ab/nsp31333S1333SagTagC11AY.430.000004
ORF1ab/nsp31333S1333SagTagC11AY.440.000006
ORF1ab/nsp31333S1333SagTagC11B0.000128
ORF1ab/nsp31333S1333SagTagC11B.1.10.000018
ORF1ab/nsp31333S1333SagTagC11B.1.3290.000608
ORF1ab/nsp31333S1333SagTagC11B.1.4220.000812
ORF1ab/nsp31333S1333SagTagC11B.1.5760.000907
ORF1ab/nsp31333S1333SagTagC11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.