CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1333 & Codon = Ggt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31333S1333GS2151GnonsynAgtGgt1521152116716-6718

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31333S1333GAgtGgt15211521All0.000291
ORF1ab/nsp31333S1333GAgtGgt691691AY.250.004156
ORF1ab/nsp31333S1333GAgtGgt158158B.1.1.3760.940476
ORF1ab/nsp31333S1333GAgtGgt117117AY.430.000518
ORF1ab/nsp31333S1333GAgtGgt112112B.1.1.70.0001
ORF1ab/nsp31333S1333GAgtGgt111111AY.440.000676
ORF1ab/nsp31333S1333GAgtGgt6363AY.40.000098
ORF1ab/nsp31333S1333GAgtGgt4141B.1.177.350.028334
ORF1ab/nsp31333S1333GAgtGgt2929B.1.617.20.000109
ORF1ab/nsp31333S1333GAgtGgt1919B.1.1.2220.003876
ORF1ab/nsp31333S1333GAgtGgt1717P.10.000268
ORF1ab/nsp31333S1333GAgtGgt1313B.1.20.000114
ORF1ab/nsp31333S1333GAgtGgt1111AY.390.000272
ORF1ab/nsp31333S1333GAgtGgt1111B.1.4290.000259
ORF1ab/nsp31333S1333GAgtGgt1010B.10.000092
ORF1ab/nsp31333S1333GAgtGgt88B.1.1.3060.003507
ORF1ab/nsp31333S1333GAgtGgt55B.1.2400.001078
ORF1ab/nsp31333S1333GAgtGgt55P.1.170.000809
ORF1ab/nsp31333S1333GAgtGgt44AY.1030.000025
ORF1ab/nsp31333S1333GAgtGgt44AY.290.000063
ORF1ab/nsp31333S1333GAgtGgt44AY.50.000083
ORF1ab/nsp31333S1333GAgtGgt44B.1.3950.028169
ORF1ab/nsp31333S1333GAgtGgt44B.1.5820.001963
ORF1ab/nsp31333S1333GAgtGgt33AY.1190.000106
ORF1ab/nsp31333S1333GAgtGgt33B.1.1770.00004
ORF1ab/nsp31333S1333GAgtGgt33P.1.140.000143
ORF1ab/nsp31333S1333GAgtGgt22AY.1020.000053
ORF1ab/nsp31333S1333GAgtGgt22AY.140.000176
ORF1ab/nsp31333S1333GAgtGgt22AY.23.10.000835
ORF1ab/nsp31333S1333GAgtGgt22AY.30.00002
ORF1ab/nsp31333S1333GAgtGgt22AY.3.10.000171
ORF1ab/nsp31333S1333GAgtGgt22AY.420.00008
ORF1ab/nsp31333S1333GAgtGgt22AY.450.000243
ORF1ab/nsp31333S1333GAgtGgt22AY.46.60.000144
ORF1ab/nsp31333S1333GAgtGgt22AY.850.000854
ORF1ab/nsp31333S1333GAgtGgt22B0.000256
ORF1ab/nsp31333S1333GAgtGgt22B.1.1.2140.000111
ORF1ab/nsp31333S1333GAgtGgt22B.1.2670.037037
ORF1ab/nsp31333S1333GAgtGgt22B.1.3510.000059
ORF1ab/nsp31333S1333GAgtGgt22B.1.4270.000101
ORF1ab/nsp31333S1333GAgtGgt22B.1.466.20.000782
ORF1ab/nsp31333S1333GAgtGgt22B.1.5240.002813
ORF1ab/nsp31333S1333GAgtGgt22B.1.6090.000959
ORF1ab/nsp31333S1333GAgtGgt11AY.1000.000046
ORF1ab/nsp31333S1333GAgtGgt11AY.1110.000183
ORF1ab/nsp31333S1333GAgtGgt11AY.1200.000037
ORF1ab/nsp31333S1333GAgtGgt11AY.200.000039
ORF1ab/nsp31333S1333GAgtGgt11AY.260.000028
ORF1ab/nsp31333S1333GAgtGgt11AY.330.000067
ORF1ab/nsp31333S1333GAgtGgt11AY.340.000097
ORF1ab/nsp31333S1333GAgtGgt11AY.370.000316
ORF1ab/nsp31333S1333GAgtGgt11AY.46.40.000165
ORF1ab/nsp31333S1333GAgtGgt11AY.470.000031
ORF1ab/nsp31333S1333GAgtGgt11AY.510.000909
ORF1ab/nsp31333S1333GAgtGgt11AY.520.000814
ORF1ab/nsp31333S1333GAgtGgt11AY.540.000095
ORF1ab/nsp31333S1333GAgtGgt11AY.680.000274
ORF1ab/nsp31333S1333GAgtGgt11AY.690.000187
ORF1ab/nsp31333S1333GAgtGgt11AY.740.000116
ORF1ab/nsp31333S1333GAgtGgt11AY.75.10.00018
ORF1ab/nsp31333S1333GAgtGgt11AY.98.10.000048
ORF1ab/nsp31333S1333GAgtGgt11AY.990.001049
ORF1ab/nsp31333S1333GAgtGgt11B.1.10.000018
ORF1ab/nsp31333S1333GAgtGgt11B.1.1.10.000327
ORF1ab/nsp31333S1333GAgtGgt11B.1.1.1920.002309
ORF1ab/nsp31333S1333GAgtGgt11B.1.1.700.000341
ORF1ab/nsp31333S1333GAgtGgt11B.1.1.830.00271
ORF1ab/nsp31333S1333GAgtGgt11B.1.1690.014925
ORF1ab/nsp31333S1333GAgtGgt11B.1.177.860.000183
ORF1ab/nsp31333S1333GAgtGgt11B.1.1790.003759
ORF1ab/nsp31333S1333GAgtGgt11B.1.360.000146
ORF1ab/nsp31333S1333GAgtGgt11B.1.438.10.000107
ORF1ab/nsp31333S1333GAgtGgt11B.1.4970.000315
ORF1ab/nsp31333S1333GAgtGgt11B.1.5050.004386
ORF1ab/nsp31333S1333GAgtGgt11B.1.5260.000024
ORF1ab/nsp31333S1333GAgtGgt11B.1.6050.005952
ORF1ab/nsp31333S1333GAgtGgt11B.1.617.10.000129
ORF1ab/nsp31333S1333GAgtGgt11B.550.00295
ORF1ab/nsp31333S1333GAgtGgt11C.36.30.000567
ORF1ab/nsp31333S1333GAgtGgt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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