CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1329

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31329N1329NN2147NsynaaCaaT212922129216704-6706
ORF1ab/nsp31329N1329DN2147DnonsynAacGac477647730.9993726704-6706
ORF1ab/nsp31329N1329DN2147DnonsynAaCGaT477630.0006281416704-6706
ORF1ab/nsp31329N1329SN2147SnonsynaAcaGc8778750.997726704-6706
ORF1ab/nsp31329N1329SN2147SnonsynaACaGT87710.001140256704-6706
ORF1ab/nsp31329N1329SN2147SnonsynAACTCA87710.001140256704-6706
ORF1ab/nsp31329N1329delN2147deldelAAC---21821816704-6706
ORF1ab/nsp31329N1329KN2147KnonsynaaCaaA97940.9690726704-6706
ORF1ab/nsp31329N1329KN2147KnonsynaaCaaG9730.03092786704-6706
ORF1ab/nsp31329N1329TN2147TnonsynaAcaCc818116704-6706
ORF1ab/nsp31329N1329YN2147YnonsynAacTac505016704-6706
ORF1ab/nsp31329N1329IN2147InonsynaAcaTc7716704-6706
ORF1ab/nsp31329N1329del2N2147del2delaACa--530.66704-6706
ORF1ab/nsp31329N1329del2N2147del2delAAc--c520.46704-6706
ORF1ab/nsp31329N1329GN2147GnonsynAAcGGc320.6666676704-6706
ORF1ab/nsp31329N1329GN2147GnonsynAACGGA310.3333336704-6706
ORF1ab/nsp31329N1329HN2147HnonsynAacCac2216704-6706
ORF1ab/nsp31329N1329XN2147XnonsynAaCTaA210.56704-6706
ORF1ab/nsp31329N1329del1N2147del1delAac-ac210.56704-6706
ORF1ab/nsp31329N1329del1N2147del1delaaCaa-210.56704-6706
ORF1ab/nsp31329N1329XN2147XnonsynAACTGA210.56704-6706
ORF1ab/nsp31329N1329QN2147QnonsynAaCCaA1116704-6706
ORF1ab/nsp31329N1329AN2147AnonsynAACGCA1116704-6706
ORF1ab/nsp31329N1329LN2147LnonsynAAcCTc1116704-6706

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31329N1329NaaCaaT2129221292All0.004072
ORF1ab/nsp31329N1329NaaCaaT1331913319B.1.1.70.011923
ORF1ab/nsp31329N1329DAacGac47734776All0.000913
ORF1ab/nsp31329N1329DAaCGaT34776All0.000001
ORF1ab/nsp31329N1329DAacGac19671968B.1.621.10.994942
ORF1ab/nsp31329N1329DAaCGaT11968B.1.621.10.000506
ORF1ab/nsp31329N1329NaaCaaT16301630AY.40.002537
ORF1ab/nsp31329N1329NaaCaaT14921492B.1.2320.80172
ORF1ab/nsp31329N1329DAacGac11401140P.1.17.10.997375
ORF1ab/nsp31329N1329DAacGac949949P.1.170.15351
ORF1ab/nsp31329N1329NaaCaaT883883AY.4.30.743266
ORF1ab/nsp31329N1329SaAcaGc875877All0.000167
ORF1ab/nsp31329N1329SaACaGT1877All0
ORF1ab/nsp31329N1329SAACTCA1877All0
ORF1ab/nsp31329N1329SaAcaGc577578B.1.20.005081
ORF1ab/nsp31329N1329SaACaGT1578B.1.20.000009
ORF1ab/nsp31329N1329NaaCaaT454454B.1.1770.005978
ORF1ab/nsp31329N1329DAacGac394396AY.90.026632
ORF1ab/nsp31329N1329DAaCGaT2396AY.90.000135
ORF1ab/nsp31329N1329NaaCaaT323323C.36.3.10.877717
ORF1ab/nsp31329N1329NaaCaaT262262AY.370.082807
ORF1ab/nsp31329N1329NaaCaaT245245B.1.617.20.000923
ORF1ab/nsp31329N1329delAAC---218218All0.000042
ORF1ab/nsp31329N1329NaaCaaT138138C.230.802326
ORF1ab/nsp31329N1329NaaCaaT134134AY.1030.000832
ORF1ab/nsp31329N1329NaaCaaT132132AY.30.001313
ORF1ab/nsp31329N1329NaaCaaT132132B.10.001209
ORF1ab/nsp31329N1329SaAcaGc129129AY.40.000201
ORF1ab/nsp31329N1329NaaCaaT125125AY.250.000752
ORF1ab/nsp31329N1329NaaCaaT116116Q.80.019129
ORF1ab/nsp31329N1329NaaCaaT101101B.1.20.000889
ORF1ab/nsp31329N1329delAAC---9898B.1.1.70.000088
ORF1ab/nsp31329N1329KaaCaaA9497All0.000018
ORF1ab/nsp31329N1329KaaCaaG397All0.000001
ORF1ab/nsp31329N1329NaaCaaT9494AY.440.000572
ORF1ab/nsp31329N1329DAacGac8282AY.40.000128
ORF1ab/nsp31329N1329TaAcaCc8181All0.000015
ORF1ab/nsp31329N1329NaaCaaT7474AY.430.000328
ORF1ab/nsp31329N1329TaAcaCc7474B.1.1.70.000066
ORF1ab/nsp31329N1329DAacGac7171B.1.6210.006285
ORF1ab/nsp31329N1329NaaCaaT6767B.1.4290.001576
ORF1ab/nsp31329N1329NaaCaaT6565B.1.10.001179
ORF1ab/nsp31329N1329NaaCaaT6060B.1.2430.004175
ORF1ab/nsp31329N1329NaaCaaT5959Q.10.007453
ORF1ab/nsp31329N1329NaaCaaT5858B.1.5750.017597
ORF1ab/nsp31329N1329NaaCaaT5353P.1.140.002533
ORF1ab/nsp31329N1329NaaCaaT5252B.1.36.290.026901
ORF1ab/nsp31329N1329NaaCaaT5151B.1.1.4340.017776
ORF1ab/nsp31329N1329YAacTac5050All0.00001
ORF1ab/nsp31329N1329NaaCaaT4949P.10.000772
ORF1ab/nsp31329N1329NaaCaaT4444B.1.5960.003834
ORF1ab/nsp31329N1329NaaCaaT4141AY.390.001013
ORF1ab/nsp31329N1329NaaCaaT3636R.10.00324
ORF1ab/nsp31329N1329DAacGac3434B.1.1.70.00003
ORF1ab/nsp31329N1329NaaCaaT3131C.370.003598
ORF1ab/nsp31329N1329NaaCaaT3030B.1.1600.000936
ORF1ab/nsp31329N1329NaaCaaT2828B.1.2820.41791
ORF1ab/nsp31329N1329NaaCaaT2626AY.740.003007
ORF1ab/nsp31329N1329DAacGac2626B.1.617.20.000098
ORF1ab/nsp31329N1329NaaCaaT2525AY.1020.000663
ORF1ab/nsp31329N1329NaaCaaT2525AY.850.010679
ORF1ab/nsp31329N1329NaaCaaT2525B.1.177.600.005461
ORF1ab/nsp31329N1329NaaCaaT2424AY.200.000933
ORF1ab/nsp31329N1329NaaCaaT2424B.1.177.440.012455
ORF1ab/nsp31329N1329SaAcaGc2323AY.250.000138
ORF1ab/nsp31329N1329DAacGac2222P.10.000347
ORF1ab/nsp31329N1329SaAcaGc2121B.1.1.70.000019
ORF1ab/nsp31329N1329KaaCaaA2020B.1.1.1570.018265
ORF1ab/nsp31329N1329NaaCaaT2020B.1.1.5190.000794
ORF1ab/nsp31329N1329NaaCaaT1919AY.50.000392
ORF1ab/nsp31329N1329NaaCaaT1818B.1.1.3170.00741
ORF1ab/nsp31329N1329NaaCaaT1717AY.420.000684
ORF1ab/nsp31329N1329DAacGac1717AY.440.000103
ORF1ab/nsp31329N1329NaaCaaT1717B.1.2580.001131
ORF1ab/nsp31329N1329YAacTac1717B.1.4290.0004
ORF1ab/nsp31329N1329NaaCaaT1616AY.1190.000565
ORF1ab/nsp31329N1329SaAcaGc1616AY.30.000159
ORF1ab/nsp31329N1329NaaCaaT1616B.1.5090.013853
ORF1ab/nsp31329N1329NaaCaaT1515B.1.3510.000446
ORF1ab/nsp31329N1329NaaCaaT1414AY.1180.000877
ORF1ab/nsp31329N1329delAAC---1414AY.40.000022
ORF1ab/nsp31329N1329DAacGac1414B.10.000128
ORF1ab/nsp31329N1329delAAC---1414B.1.1770.000184
ORF1ab/nsp31329N1329delAAC---1313AY.430.000058
ORF1ab/nsp31329N1329NaaCaaT1313AY.640.007738
ORF1ab/nsp31329N1329NaaCaaT1212AY.330.000801
ORF1ab/nsp31329N1329NaaCaaT1212AY.98.10.000581
ORF1ab/nsp31329N1329NaaCaaT1212B.1.5820.005888
ORF1ab/nsp31329N1329SaAcaGc1112B.1.617.20.000041
ORF1ab/nsp31329N1329SAACTCA112B.1.617.20.000004
ORF1ab/nsp31329N1329NaaCaaT1111B.1.4270.000555
ORF1ab/nsp31329N1329NaaCaaT1111B.1.5260.000259
ORF1ab/nsp31329N1329NaaCaaT1111B.1.5610.004367
ORF1ab/nsp31329N1329NaaCaaT1111B.1.5670.036667
ORF1ab/nsp31329N1329NaaCaaT1010AY.460.001041
ORF1ab/nsp31329N1329NaaCaaT1010AY.9.10.000837
ORF1ab/nsp31329N1329SaAcaGc1010B.10.000092
ORF1ab/nsp31329N1329NaaCaaT1010B.1.1.630.003858
ORF1ab/nsp31329N1329SaAcaGc99AY.1200.000335
ORF1ab/nsp31329N1329NaaCaaT99AY.1200.000335
ORF1ab/nsp31329N1329NaaCaaT99B.1.1.10.00294
ORF1ab/nsp31329N1329NaaCaaT99B.1.1.2140.000499
ORF1ab/nsp31329N1329NaaCaaT99B.1.1.500.00611
ORF1ab/nsp31329N1329NaaCaaT99B.1.177.350.00622
ORF1ab/nsp31329N1329DAacGac99B.1.2400.00194
ORF1ab/nsp31329N1329NaaCaaT99B.1.6210.000797
ORF1ab/nsp31329N1329NaaCaaT88AY.1000.000368
ORF1ab/nsp31329N1329NaaCaaT88B.1.5250.000905
ORF1ab/nsp31329N1329SaAcaGc88B.1.6320.053691
ORF1ab/nsp31329N1329IaAcaTc77All0.000001
ORF1ab/nsp31329N1329KaaCaaA77AY.200.000272
ORF1ab/nsp31329N1329NaaCaaT77AY.290.00011
ORF1ab/nsp31329N1329NaaCaaT77AY.450.000852
ORF1ab/nsp31329N1329NaaCaaT77AY.750.000392
ORF1ab/nsp31329N1329SaAcaGc77B.1.10.000127
ORF1ab/nsp31329N1329NaaCaaT77B.1.351.50.004197
ORF1ab/nsp31329N1329NaaCaaT77B.1.360.001021
ORF1ab/nsp31329N1329KaaCaaA77B.1.617.20.000026
ORF1ab/nsp31329N1329NaaCaaT77B.1.6370.000512
ORF1ab/nsp31329N1329NaaCaaT77P.1.60.013619
ORF1ab/nsp31329N1329NaaCaaT77P.20.001306
ORF1ab/nsp31329N1329NaaCaaT66AY.1130.000854
ORF1ab/nsp31329N1329NaaCaaT66AY.1170.000507
ORF1ab/nsp31329N1329NaaCaaT66AY.230.000418
ORF1ab/nsp31329N1329NaaCaaT66AY.270.000388
ORF1ab/nsp31329N1329YAacTac66AY.390.000148
ORF1ab/nsp31329N1329NaaCaaT66AY.39.10.000238
ORF1ab/nsp31329N1329NaaCaaT66AY.4.40.002455
ORF1ab/nsp31329N1329delAAC---66AY.4.50.000645
ORF1ab/nsp31329N1329SaAcaGc66B.1.3510.000178
ORF1ab/nsp31329N1329delAAC---66B.1.617.20.000023
ORF1ab/nsp31329N1329del2aACa--35All0.000001
ORF1ab/nsp31329N1329del2AAc--c25All0
ORF1ab/nsp31329N1329DAacGac55AY.1030.000031
ORF1ab/nsp31329N1329NaaCaaT55AY.1050.003215
ORF1ab/nsp31329N1329NaaCaaT55AY.130.000805
ORF1ab/nsp31329N1329NaaCaaT55AY.16.10.00235
ORF1ab/nsp31329N1329NaaCaaT55AY.340.000485
ORF1ab/nsp31329N1329SaAcaGc55AY.430.000022
ORF1ab/nsp31329N1329NaaCaaT55AY.5.40.001384
ORF1ab/nsp31329N1329NaaCaaT55AY.530.001438
ORF1ab/nsp31329N1329NaaCaaT55AY.610.000524
ORF1ab/nsp31329N1329NaaCaaT55B.1.1.3060.002192
ORF1ab/nsp31329N1329NaaCaaT55B.1.4000.002145
ORF1ab/nsp31329N1329NaaCaaT55B.1.4700.007022
ORF1ab/nsp31329N1329SaAcaGc55B.1.5960.000436
ORF1ab/nsp31329N1329SaAcaGc55B.1.617.10.000645
ORF1ab/nsp31329N1329NaaCaaT55B.1.617.10.000645
ORF1ab/nsp31329N1329SaAcaGc55P.10.000079
ORF1ab/nsp31329N1329KaaCaaA44AY.250.000024
ORF1ab/nsp31329N1329delAAC---44AY.250.000024
ORF1ab/nsp31329N1329KaaCaaA44AY.30.00004
ORF1ab/nsp31329N1329NaaCaaT44AY.3.10.000341
ORF1ab/nsp31329N1329KaaCaaA44AY.40.000006
ORF1ab/nsp31329N1329NaaCaaT44AY.4.20.000087
ORF1ab/nsp31329N1329NaaCaaT44AY.5.30.00135
ORF1ab/nsp31329N1329NaaCaaT44AY.540.000381
ORF1ab/nsp31329N1329NaaCaaT44AY.9.20.000147
ORF1ab/nsp31329N1329NaaCaaT44AY.980.000316
ORF1ab/nsp31329N1329delAAC---44B.10.000037
ORF1ab/nsp31329N1329DAacGac44B.1.10.000073
ORF1ab/nsp31329N1329NaaCaaT44B.1.1.2160.003562
ORF1ab/nsp31329N1329NaaCaaT44B.1.1.3180.001207
ORF1ab/nsp31329N1329NaaCaaT44B.1.1.3480.003185
ORF1ab/nsp31329N1329NaaCaaT44B.1.2340.000528
ORF1ab/nsp31329N1329NaaCaaT44B.1.4040.005208
ORF1ab/nsp31329N1329NaaCaaT44B.1.4650.015209
ORF1ab/nsp31329N1329NaaCaaT44B.1.5950.001044
ORF1ab/nsp31329N1329KaaCaaA44P.20.000747
ORF1ab/nsp31329N1329GAAcGGc23All0
ORF1ab/nsp31329N1329GAACGGA13All0
ORF1ab/nsp31329N1329NaaCaaT33AY.100.00159
ORF1ab/nsp31329N1329YAacTac33AY.40.000005
ORF1ab/nsp31329N1329KaaCaaA33AY.4.30.002525
ORF1ab/nsp31329N1329DAacGac33AY.430.000013
ORF1ab/nsp31329N1329NaaCaaT33AY.46.20.001906
ORF1ab/nsp31329N1329NaaCaaT33AY.560.004815
ORF1ab/nsp31329N1329NaaCaaT33AY.840.001312
ORF1ab/nsp31329N1329NaaCaaT33B0.000383
ORF1ab/nsp31329N1329KaaCaaA23B.10.000018
ORF1ab/nsp31329N1329KaaCaaG13B.10.000009
ORF1ab/nsp31329N1329delAAC---33B.1.10.000054
ORF1ab/nsp31329N1329YAacTac33B.1.1.5190.000119
ORF1ab/nsp31329N1329NaaCaaT33B.1.1.700.001023
ORF1ab/nsp31329N1329NaaCaaT33B.1.110.30.002155
ORF1ab/nsp31329N1329NaaCaaT33B.1.1730.078947
ORF1ab/nsp31329N1329delAAC---33B.1.177.160.001993
ORF1ab/nsp31329N1329delAAC---33B.1.177.40.000633
ORF1ab/nsp31329N1329KaaCaaA33B.1.20.000026
ORF1ab/nsp31329N1329SaAcaGc33B.1.214.20.001799
ORF1ab/nsp31329N1329NaaCaaT33B.1.2400.000647
ORF1ab/nsp31329N1329delAAC---33B.1.36.170.001482
ORF1ab/nsp31329N1329YAacTac33B.1.4970.000944
ORF1ab/nsp31329N1329NaaCaaT33B.60.00273
ORF1ab/nsp31329N1329NaaCaaT33C.36.30.001702
ORF1ab/nsp31329N1329DAacGac33C.370.000348
ORF1ab/nsp31329N1329NaaCaaT33C.90.090909
ORF1ab/nsp31329N1329KaaCaaA33P.10.000047
ORF1ab/nsp31329N1329NaaCaaT33P.1.160.001122
ORF1ab/nsp31329N1329NaaCaaT33P.1.170.000485
ORF1ab/nsp31329N1329NaaCaaT33P.1.20.003468
ORF1ab/nsp31329N1329NaaCaaT22A.10.000564
ORF1ab/nsp31329N1329NaaCaaT22A.290.010638
ORF1ab/nsp31329N1329NaaCaaT22AD.20.000438
ORF1ab/nsp31329N1329HAacCac22All0
ORF1ab/nsp31329N1329XAACTGA12All0
ORF1ab/nsp31329N1329del1Aac-ac12All0
ORF1ab/nsp31329N1329del1aaCaa-12All0
ORF1ab/nsp31329N1329XAaCTaA12All0
ORF1ab/nsp31329N1329KaaCaaA22AY.1030.000012
ORF1ab/nsp31329N1329NaaCaaT22AY.1060.00067
ORF1ab/nsp31329N1329NaaCaaT22AY.1210.000271
ORF1ab/nsp31329N1329NaaCaaT22AY.260.000057
ORF1ab/nsp31329N1329NaaCaaT22AY.29.10.000441
ORF1ab/nsp31329N1329SaAcaGc22AY.340.000194
ORF1ab/nsp31329N1329delAAC---22AY.390.000049
ORF1ab/nsp31329N1329NaaCaaT22AY.4.2.10.000298
ORF1ab/nsp31329N1329SaAcaGc22AY.420.00008
ORF1ab/nsp31329N1329KaaCaaA22AY.430.000009
ORF1ab/nsp31329N1329TaAcaCc22AY.440.000012
ORF1ab/nsp31329N1329KaaCaaA22AY.440.000012
ORF1ab/nsp31329N1329NaaCaaT22AY.46.30.001867
ORF1ab/nsp31329N1329NaaCaaT22AY.46.50.000397
ORF1ab/nsp31329N1329NaaCaaT22AY.46.60.000144
ORF1ab/nsp31329N1329delAAC---22AY.50.000041
ORF1ab/nsp31329N1329KaaCaaA22AY.7.20.001119
ORF1ab/nsp31329N1329NaaCaaT22AY.700.000417
ORF1ab/nsp31329N1329YAacTac22B.1.10.000036
ORF1ab/nsp31329N1329KaaCaaA22B.1.10.000036
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.1590.009346
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.1980.002937
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.2220.000408
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.250.001137
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.2770.001517
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.280.000622
ORF1ab/nsp31329N1329YAacTac22B.1.1.2910.001485
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.3020.004149
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.330.000842
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.370.000386
ORF1ab/nsp31329N1329KaaCaaA22B.1.1.70.000002
ORF1ab/nsp31329N1329NaaCaaT22B.1.160.90.014388
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.100.001756
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.120.000303
ORF1ab/nsp31329N1329delAAC---22B.1.177.170.001642
ORF1ab/nsp31329N1329delAAC---22B.1.177.180.00232
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.420.001789
ORF1ab/nsp31329N1329delAAC---22B.1.177.560.001335
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.560.001335
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.730.001133
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.770.001452
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.860.000367
ORF1ab/nsp31329N1329IaAcaTc22B.1.20.000018
ORF1ab/nsp31329N1329NaaCaaT22B.1.258.170.000208
ORF1ab/nsp31329N1329NaaCaaT22B.1.258.70.003824
ORF1ab/nsp31329N1329NaaCaaT22B.1.3150.012121
ORF1ab/nsp31329N1329SaAcaGc22B.1.351.30.001753
ORF1ab/nsp31329N1329delAAC---22B.1.360.000292
ORF1ab/nsp31329N1329NaaCaaT22B.1.36.100.009569
ORF1ab/nsp31329N1329SaAcaGc22B.1.3960.001411
ORF1ab/nsp31329N1329NaaCaaT22B.1.5500.027397
ORF1ab/nsp31329N1329KaaCaaA22B.1.5540.008811
ORF1ab/nsp31329N1329NaaCaaT22B.1.5760.001813
ORF1ab/nsp31329N1329NaaCaaT22B.1.5770.001375
ORF1ab/nsp31329N1329IaAcaTc22B.1.617.20.000008
ORF1ab/nsp31329N1329SaAcaGc22B.1.6210.000177
ORF1ab/nsp31329N1329DAacGac22B.1.6230.001073
ORF1ab/nsp31329N1329NaaCaaT22D.20.00015
ORF1ab/nsp31329N1329NaaCaaT22N.90.011905
ORF1ab/nsp31329N1329NaaCaaT22P.1.120.000968
ORF1ab/nsp31329N1329DAacGac22P.1.120.000968
ORF1ab/nsp31329N1329NaaCaaT22P.1.150.000465
ORF1ab/nsp31329N1329DAacGac22P.20.000373
ORF1ab/nsp31329N1329NaaCaaT22Q.70.002222
ORF1ab/nsp31329N1329NaaCaaT110.055556
ORF1ab/nsp31329N1329HAacCac11A0.000387
ORF1ab/nsp31329N1329delAAC---11A.210.00277
ORF1ab/nsp31329N1329AAACGCA11All0
ORF1ab/nsp31329N1329QAaCCaA11All0
ORF1ab/nsp31329N1329LAAcCTc11All0
ORF1ab/nsp31329N1329NaaCaaT11AY.10.000396
ORF1ab/nsp31329N1329SaAcaGc11AY.1020.000027
ORF1ab/nsp31329N1329KaaCaaA11AY.1020.000027
ORF1ab/nsp31329N1329SaAcaGc11AY.1030.000006
ORF1ab/nsp31329N1329NaaCaaT11AY.1070.000466
ORF1ab/nsp31329N1329NaaCaaT11AY.1080.001103
ORF1ab/nsp31329N1329DAacGac11AY.1080.001103
ORF1ab/nsp31329N1329SaAcaGc11AY.1080.001103
ORF1ab/nsp31329N1329SaAcaGc11AY.1130.000142
ORF1ab/nsp31329N1329GAAcGGc11AY.1130.000142
ORF1ab/nsp31329N1329SaAcaGc11AY.1160.000287
ORF1ab/nsp31329N1329NaaCaaT11AY.1160.000287
ORF1ab/nsp31329N1329NaaCaaT11AY.116.10.000311
ORF1ab/nsp31329N1329YAacTac11AY.1190.000035
ORF1ab/nsp31329N1329KaaCaaA11AY.120.000316
ORF1ab/nsp31329N1329KaaCaaA11AY.1200.000037
ORF1ab/nsp31329N1329DAacGac11AY.130.000161
ORF1ab/nsp31329N1329NaaCaaT11AY.150.002222
ORF1ab/nsp31329N1329NaaCaaT11AY.160.00038
ORF1ab/nsp31329N1329SaAcaGc11AY.16.10.00047
ORF1ab/nsp31329N1329delAAC---11AY.190.00114
ORF1ab/nsp31329N1329TaAcaCc11AY.230.00007
ORF1ab/nsp31329N1329NaaCaaT11AY.23.10.000417
ORF1ab/nsp31329N1329YAacTac11AY.250.000006
ORF1ab/nsp31329N1329DAacGac11AY.250.000006
ORF1ab/nsp31329N1329NaaCaaT11AY.280.00189
ORF1ab/nsp31329N1329SaAcaGc11AY.290.000016
ORF1ab/nsp31329N1329delAAC---11AY.30.00001
ORF1ab/nsp31329N1329DAacGac11AY.3.10.000085
ORF1ab/nsp31329N1329KaaCaaG11AY.330.000067
ORF1ab/nsp31329N1329DAacGac11AY.34.10.00051
ORF1ab/nsp31329N1329NaaCaaT11AY.350.000233
ORF1ab/nsp31329N1329delAAC---11AY.360.000148
ORF1ab/nsp31329N1329SaAcaGc11AY.380.000499
ORF1ab/nsp31329N1329TaAcaCc11AY.40.000002
ORF1ab/nsp31329N1329KaaCaaA11AY.4.20.000022
ORF1ab/nsp31329N1329KaaCaaA11AY.4.2.10.000149
ORF1ab/nsp31329N1329NaaCaaT11AY.4.50.000107
ORF1ab/nsp31329N1329KaaCaaA11AY.420.00004
ORF1ab/nsp31329N1329YAacTac11AY.440.000006
ORF1ab/nsp31329N1329SaAcaGc11AY.440.000006
ORF1ab/nsp31329N1329delAAC---11AY.440.000006
ORF1ab/nsp31329N1329SaAcaGc11AY.460.000104
ORF1ab/nsp31329N1329delAAC---11AY.46.20.000635
ORF1ab/nsp31329N1329NaaCaaT11AY.46.40.000165
ORF1ab/nsp31329N1329DAacGac11AY.470.000031
ORF1ab/nsp31329N1329NaaCaaT11AY.470.000031
ORF1ab/nsp31329N1329YAacTac11AY.480.000465
ORF1ab/nsp31329N1329DAacGac11AY.50.000021
ORF1ab/nsp31329N1329SaAcaGc11AY.50.000021
ORF1ab/nsp31329N1329NaaCaaT11AY.500.000799
ORF1ab/nsp31329N1329NaaCaaT11AY.580.000907
ORF1ab/nsp31329N1329NaaCaaT11AY.590.00053
ORF1ab/nsp31329N1329NaaCaaT11AY.60.000041
ORF1ab/nsp31329N1329delAAC---11AY.60.000041
ORF1ab/nsp31329N1329delAAC---11AY.600.000938
ORF1ab/nsp31329N1329KaaCaaA11AY.610.000105
ORF1ab/nsp31329N1329DAacGac11AY.680.000274
ORF1ab/nsp31329N1329NaaCaaT11AY.690.000187
ORF1ab/nsp31329N1329delAAC---11AY.70.000196
ORF1ab/nsp31329N1329NaaCaaT11AY.7.20.000559
ORF1ab/nsp31329N1329DAacGac11AY.710.000475
ORF1ab/nsp31329N1329delAAC---11AY.720.001361
ORF1ab/nsp31329N1329delAAC---11AY.750.000056
ORF1ab/nsp31329N1329DAacGac11AY.75.10.00018
ORF1ab/nsp31329N1329NaaCaaT11AY.75.10.00018
ORF1ab/nsp31329N1329NaaCaaT11AY.810.001992
ORF1ab/nsp31329N1329del2AAc--c11AY.840.000437
ORF1ab/nsp31329N1329NaaCaaT11AY.870.000833
ORF1ab/nsp31329N1329NaaCaaT11AY.890.004902
ORF1ab/nsp31329N1329delAAC---11AY.90.000068
ORF1ab/nsp31329N1329KaaCaaA11AY.9.20.000037
ORF1ab/nsp31329N1329IaAcaTc11AY.9.20.000037
ORF1ab/nsp31329N1329YAacTac11AY.910.00073
ORF1ab/nsp31329N1329NaaCaaT11AY.920.000287
ORF1ab/nsp31329N1329DAacGac11AY.98.10.000048
ORF1ab/nsp31329N1329delAAC---11AY.98.10.000048
ORF1ab/nsp31329N1329del2AAc--c11AY.990.001049
ORF1ab/nsp31329N1329delAAC---11AY.99.10.001553
ORF1ab/nsp31329N1329NaaCaaT11AY.99.20.000092
ORF1ab/nsp31329N1329DAacGac11B0.000128
ORF1ab/nsp31329N1329YAacTac11B0.000128
ORF1ab/nsp31329N1329del1aaCaa-11B.10.000009
ORF1ab/nsp31329N1329YAacTac11B.10.000009
ORF1ab/nsp31329N1329IaAcaTc11B.1.10.000018
ORF1ab/nsp31329N1329QAaCCaA11B.1.10.000018
ORF1ab/nsp31329N1329del1Aac-ac11B.1.10.000018
ORF1ab/nsp31329N1329HAacCac11B.1.10.000018
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.150.013514
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.1530.001095
ORF1ab/nsp31329N1329KaaCaaA11B.1.1.2160.00089
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2170.003636
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2200.001859
ORF1ab/nsp31329N1329SaAcaGc11B.1.1.2220.000204
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2370.005405
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2790.001121
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2820.011628
ORF1ab/nsp31329N1329DAacGac11B.1.1.2840.000107
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2840.000107
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2940.001266
ORF1ab/nsp31329N1329YAacTac11B.1.1.2980.000862
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3030.002762
ORF1ab/nsp31329N1329delAAC---11B.1.1.3110.000358
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3110.000358
ORF1ab/nsp31329N1329delAAC---11B.1.1.3120.001912
ORF1ab/nsp31329N1329delAAC---11B.1.1.3480.000796
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3530.020833
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3560.008547
ORF1ab/nsp31329N1329SaAcaGc11B.1.1.370.000193
ORF1ab/nsp31329N1329delAAC---11B.1.1.370.000193
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3720.000689
ORF1ab/nsp31329N1329DAacGac11B.1.1.390.00051
ORF1ab/nsp31329N1329delAAC---11B.1.1.4090.002833
ORF1ab/nsp31329N1329del2aACa--11B.1.1.4340.000349
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.440.00241
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.4400.011765
ORF1ab/nsp31329N1329SaAcaGc11B.1.1.4480.002033
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.4640.001473
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.470.005348
ORF1ab/nsp31329N1329SaAcaGc11B.1.1.5190.00004
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.5210.005348
ORF1ab/nsp31329N1329GAAcGGc11B.1.1.70.000001
ORF1ab/nsp31329N1329YAacTac11B.1.1.70.000001
ORF1ab/nsp31329N1329IaAcaTc11B.1.1.70.000001
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.720.030303
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.890.006061
ORF1ab/nsp31329N1329DAacGac11B.1.1110.001175
ORF1ab/nsp31329N1329DAacGac11B.1.1510.011111
ORF1ab/nsp31329N1329NaaCaaT11B.1.1570.002985
ORF1ab/nsp31329N1329delAAC---11B.1.1600.000031
ORF1ab/nsp31329N1329NaaCaaT11B.1.160.160.000929
ORF1ab/nsp31329N1329NaaCaaT11B.1.160.230.004831
ORF1ab/nsp31329N1329delAAC---11B.1.177.150.000631
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.170.000821
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.270.009434
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.330.001645
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.40.000211
ORF1ab/nsp31329N1329DAacGac11B.1.177.430.001477
ORF1ab/nsp31329N1329delAAC---11B.1.177.580.001332
ORF1ab/nsp31329N1329delAAC---11B.1.177.60.000977
ORF1ab/nsp31329N1329DAacGac11B.1.177.60.000977
ORF1ab/nsp31329N1329YAacTac11B.1.177.600.000218
ORF1ab/nsp31329N1329delAAC---11B.1.177.690.001484
ORF1ab/nsp31329N1329delAAC---11B.1.177.70.000165
ORF1ab/nsp31329N1329KaaCaaA11B.1.177.70.000165
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.70.000165
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.80.000752
ORF1ab/nsp31329N1329delAAC---11B.1.177.810.000189
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.810.000189
ORF1ab/nsp31329N1329SaAcaGc11B.1.177.810.000189
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.820.000477
ORF1ab/nsp31329N1329delAAC---11B.1.177.870.000728
ORF1ab/nsp31329N1329del2aACa--11B.1.20.000009
ORF1ab/nsp31329N1329NaaCaaT11B.1.2060.000816
ORF1ab/nsp31329N1329delAAC---11B.1.2100.002132
ORF1ab/nsp31329N1329SaAcaGc11B.1.2100.002132
ORF1ab/nsp31329N1329NaaCaaT11B.1.2140.003663
ORF1ab/nsp31329N1329NaaCaaT11B.1.2210.000071
ORF1ab/nsp31329N1329KaaCaaA11B.1.2210.000071
ORF1ab/nsp31329N1329KaaCaaA11B.1.2320.000537
ORF1ab/nsp31329N1329NaaCaaT11B.1.2410.000812
ORF1ab/nsp31329N1329DAacGac11B.1.2430.00007
ORF1ab/nsp31329N1329NaaCaaT11B.1.2470.014925
ORF1ab/nsp31329N1329SaAcaGc11B.1.2580.000067
ORF1ab/nsp31329N1329delAAC---11B.1.258.100.011364
ORF1ab/nsp31329N1329NaaCaaT11B.1.3110.000275
ORF1ab/nsp31329N1329DAacGac11B.1.3490.000715
ORF1ab/nsp31329N1329KaaCaaA11B.1.360.000146
ORF1ab/nsp31329N1329TaAcaCc11B.1.36.170.000494
ORF1ab/nsp31329N1329NaaCaaT11B.1.36.180.00042
ORF1ab/nsp31329N1329NaaCaaT11B.1.36.350.002604
ORF1ab/nsp31329N1329SaAcaGc11B.1.36.380.001642
ORF1ab/nsp31329N1329NaaCaaT11B.1.3610.001289
ORF1ab/nsp31329N1329NaaCaaT11B.1.3690.000285
ORF1ab/nsp31329N1329YAacTac11B.1.3690.000285
ORF1ab/nsp31329N1329DAacGac11B.1.3950.007042
ORF1ab/nsp31329N1329NaaCaaT11B.1.3960.000706
ORF1ab/nsp31329N1329NaaCaaT11B.1.4260.001009
ORF1ab/nsp31329N1329DAacGac11B.1.4270.00005
ORF1ab/nsp31329N1329TaAcaCc11B.1.4290.000024
ORF1ab/nsp31329N1329NaaCaaT11B.1.438.10.000107
ORF1ab/nsp31329N1329NaaCaaT11B.1.466.20.000391
ORF1ab/nsp31329N1329NaaCaaT11B.1.4680.005714
ORF1ab/nsp31329N1329NaaCaaT11B.1.4970.000315
ORF1ab/nsp31329N1329NaaCaaT11B.1.499.10.111111
ORF1ab/nsp31329N1329NaaCaaT11B.1.5240.001406
ORF1ab/nsp31329N1329DAacGac11B.1.5260.000024
ORF1ab/nsp31329N1329KaaCaaA11B.1.5260.000024
ORF1ab/nsp31329N1329NaaCaaT11B.1.564.10.001577
ORF1ab/nsp31329N1329KaaCaaA11B.1.5820.000491
ORF1ab/nsp31329N1329DAacGac11B.1.5900.004545
ORF1ab/nsp31329N1329NaaCaaT11B.1.5900.004545
ORF1ab/nsp31329N1329SaAcaGc11B.1.5950.000261
ORF1ab/nsp31329N1329YAacTac11B.1.5960.000087
ORF1ab/nsp31329N1329NaaCaaT11B.1.5990.00365
ORF1ab/nsp31329N1329NaaCaaT11B.1.6000.005848
ORF1ab/nsp31329N1329NaaCaaT11B.1.6050.005952
ORF1ab/nsp31329N1329NaaCaaT11B.1.6090.000479
ORF1ab/nsp31329N1329XAACTGA11B.1.617.20.000004
ORF1ab/nsp31329N1329del2aACa--11B.1.617.20.000004
ORF1ab/nsp31329N1329AAACGCA11B.1.617.20.000004
ORF1ab/nsp31329N1329TaAcaCc11B.1.617.20.000004
ORF1ab/nsp31329N1329GAACGGA11B.1.617.20.000004
ORF1ab/nsp31329N1329LAAcCTc11B.1.617.20.000004
ORF1ab/nsp31329N1329NaaCaaT11B.1.619.10.000641
ORF1ab/nsp31329N1329NaaCaaT11B.1.6200.000946
ORF1ab/nsp31329N1329delAAC---11B.1.6210.000089
ORF1ab/nsp31329N1329NaaCaaT11B.1.6230.000536
ORF1ab/nsp31329N1329delAAC---11B.1.6300.005236
ORF1ab/nsp31329N1329NaaCaaT11B.1.80.001972
ORF1ab/nsp31329N1329NaaCaaT11B.370.028571
ORF1ab/nsp31329N1329NaaCaaT11B.400.000364
ORF1ab/nsp31329N1329NaaCaaT11C.290.0625
ORF1ab/nsp31329N1329NaaCaaT11C.300.001727
ORF1ab/nsp31329N1329delAAC---11C.350.000774
ORF1ab/nsp31329N1329SaAcaGc11C.370.000116
ORF1ab/nsp31329N1329YAacTac11C.370.000116
ORF1ab/nsp31329N1329NaaCaaT11C.390.018868
ORF1ab/nsp31329N1329KaaCaaA11D.20.000075
ORF1ab/nsp31329N1329YAacTac11D.20.000075
ORF1ab/nsp31329N1329XAaCTaA11D.20.000075
ORF1ab/nsp31329N1329KaaCaaA11N.50.001767
ORF1ab/nsp31329N1329NaaCaaT11N.60.007092
ORF1ab/nsp31329N1329KaaCaaG11N.60.007092
ORF1ab/nsp31329N1329delAAC---11P.10.000016
ORF1ab/nsp31329N1329NaaCaaT11P.1.10.000318
ORF1ab/nsp31329N1329DAacGac11P.1.10.000318
ORF1ab/nsp31329N1329SaAcaGc11P.1.10.000318
ORF1ab/nsp31329N1329delAAC---11P.1.150.000232
ORF1ab/nsp31329N1329KaaCaaA11P.1.160.000374
ORF1ab/nsp31329N1329DAacGac11P.1.20.001156
ORF1ab/nsp31329N1329NaaCaaT11P.1.90.004808
ORF1ab/nsp31329N1329SaAcaGc11P.20.000187
ORF1ab/nsp31329N1329SaAcaGc11Q.10.000126
ORF1ab/nsp31329N1329DAacGac11Q.10.000126
ORF1ab/nsp31329N1329KaaCaaA11Q.40.000455
ORF1ab/nsp31329N1329SaAcaGc11R.10.00009
ORF1ab/nsp31329N1329delAAC---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.