CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1329 | N1329N | N2147N | syn | aaC | aaT | 21292 | 21292 | 1 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329D | N2147D | nonsyn | Aac | Gac | 4776 | 4773 | 0.999372 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329D | N2147D | nonsyn | AaC | GaT | 4776 | 3 | 0.000628141 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329S | N2147S | nonsyn | aAc | aGc | 877 | 875 | 0.99772 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329S | N2147S | nonsyn | aAC | aGT | 877 | 1 | 0.00114025 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329S | N2147S | nonsyn | AAC | TCA | 877 | 1 | 0.00114025 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329del | N2147del | del | AAC | --- | 218 | 218 | 1 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329K | N2147K | nonsyn | aaC | aaA | 97 | 94 | 0.969072 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329K | N2147K | nonsyn | aaC | aaG | 97 | 3 | 0.0309278 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329T | N2147T | nonsyn | aAc | aCc | 81 | 81 | 1 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329Y | N2147Y | nonsyn | Aac | Tac | 50 | 50 | 1 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329I | N2147I | nonsyn | aAc | aTc | 7 | 7 | 1 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329del2 | N2147del2 | del | aAC | a-- | 5 | 3 | 0.6 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329del2 | N2147del2 | del | AAc | --c | 5 | 2 | 0.4 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329G | N2147G | nonsyn | AAc | GGc | 3 | 2 | 0.666667 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329G | N2147G | nonsyn | AAC | GGA | 3 | 1 | 0.333333 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329H | N2147H | nonsyn | Aac | Cac | 2 | 2 | 1 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329X | N2147X | nonsyn | AaC | TaA | 2 | 1 | 0.5 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329del1 | N2147del1 | del | Aac | -ac | 2 | 1 | 0.5 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329del1 | N2147del1 | del | aaC | aa- | 2 | 1 | 0.5 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329X | N2147X | nonsyn | AAC | TGA | 2 | 1 | 0.5 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329Q | N2147Q | nonsyn | AaC | CaA | 1 | 1 | 1 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329A | N2147A | nonsyn | AAC | GCA | 1 | 1 | 1 | 6704-6706 |
ORF1ab/nsp3 | 1329 | N1329L | N2147L | nonsyn | AAc | CTc | 1 | 1 | 1 | 6704-6706 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 21292 | 21292 | All | 0.004072 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 13319 | 13319 | B.1.1.7 | 0.011923 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 4773 | 4776 | All | 0.000913 |
ORF1ab/nsp3 | 1329 | N1329D | AaC | GaT | 3 | 4776 | All | 0.000001 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1967 | 1968 | B.1.621.1 | 0.994942 |
ORF1ab/nsp3 | 1329 | N1329D | AaC | GaT | 1 | 1968 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1630 | 1630 | AY.4 | 0.002537 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1492 | 1492 | B.1.232 | 0.80172 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1140 | 1140 | P.1.17.1 | 0.997375 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 949 | 949 | P.1.17 | 0.15351 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 883 | 883 | AY.4.3 | 0.743266 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 875 | 877 | All | 0.000167 |
ORF1ab/nsp3 | 1329 | N1329S | aAC | aGT | 1 | 877 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329S | AAC | TCA | 1 | 877 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 577 | 578 | B.1.2 | 0.005081 |
ORF1ab/nsp3 | 1329 | N1329S | aAC | aGT | 1 | 578 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 454 | 454 | B.1.177 | 0.005978 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 394 | 396 | AY.9 | 0.026632 |
ORF1ab/nsp3 | 1329 | N1329D | AaC | GaT | 2 | 396 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 323 | 323 | C.36.3.1 | 0.877717 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 262 | 262 | AY.37 | 0.082807 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 245 | 245 | B.1.617.2 | 0.000923 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 218 | 218 | All | 0.000042 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 138 | 138 | C.23 | 0.802326 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 134 | 134 | AY.103 | 0.000832 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 132 | 132 | AY.3 | 0.001313 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 132 | 132 | B.1 | 0.001209 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 129 | 129 | AY.4 | 0.000201 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 125 | 125 | AY.25 | 0.000752 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 116 | 116 | Q.8 | 0.019129 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 101 | 101 | B.1.2 | 0.000889 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 98 | 98 | B.1.1.7 | 0.000088 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 94 | 97 | All | 0.000018 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaG | 3 | 97 | All | 0.000001 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 94 | 94 | AY.44 | 0.000572 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 82 | 82 | AY.4 | 0.000128 |
ORF1ab/nsp3 | 1329 | N1329T | aAc | aCc | 81 | 81 | All | 0.000015 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 74 | 74 | AY.43 | 0.000328 |
ORF1ab/nsp3 | 1329 | N1329T | aAc | aCc | 74 | 74 | B.1.1.7 | 0.000066 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 71 | 71 | B.1.621 | 0.006285 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 67 | 67 | B.1.429 | 0.001576 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 65 | 65 | B.1.1 | 0.001179 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 60 | 60 | B.1.243 | 0.004175 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 59 | 59 | Q.1 | 0.007453 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 58 | 58 | B.1.575 | 0.017597 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 53 | 53 | P.1.14 | 0.002533 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 52 | 52 | B.1.36.29 | 0.026901 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 51 | 51 | B.1.1.434 | 0.017776 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 50 | 50 | All | 0.00001 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 49 | 49 | P.1 | 0.000772 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 44 | 44 | B.1.596 | 0.003834 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 41 | 41 | AY.39 | 0.001013 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 36 | 36 | R.1 | 0.00324 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 34 | 34 | B.1.1.7 | 0.00003 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 31 | 31 | C.37 | 0.003598 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 30 | 30 | B.1.160 | 0.000936 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 28 | 28 | B.1.282 | 0.41791 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 26 | 26 | AY.74 | 0.003007 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 25 | 25 | AY.102 | 0.000663 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 25 | 25 | AY.85 | 0.010679 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 25 | 25 | B.1.177.60 | 0.005461 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 24 | 24 | AY.20 | 0.000933 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 24 | 24 | B.1.177.44 | 0.012455 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 23 | 23 | AY.25 | 0.000138 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 22 | 22 | P.1 | 0.000347 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 20 | 20 | B.1.1.157 | 0.018265 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 20 | 20 | B.1.1.519 | 0.000794 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 18 | 18 | B.1.1.317 | 0.00741 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 17 | 17 | B.1.258 | 0.001131 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 17 | 17 | B.1.429 | 0.0004 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 16 | 16 | B.1.509 | 0.013853 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 15 | 15 | B.1.351 | 0.000446 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 13 | 13 | AY.64 | 0.007738 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 12 | 12 | AY.98.1 | 0.000581 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 12 | 12 | B.1.582 | 0.005888 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 11 | 12 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 1329 | N1329S | AAC | TCA | 1 | 12 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 11 | 11 | B.1.561 | 0.004367 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 11 | 11 | B.1.567 | 0.036667 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 10 | 10 | AY.46 | 0.001041 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 10 | 10 | AY.9.1 | 0.000837 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 10 | 10 | B.1.1.63 | 0.003858 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 9 | 9 | B.1.1.1 | 0.00294 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 9 | 9 | B.1.1.214 | 0.000499 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 9 | 9 | B.1.1.50 | 0.00611 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 9 | 9 | B.1.177.35 | 0.00622 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 8 | 8 | B.1.632 | 0.053691 |
ORF1ab/nsp3 | 1329 | N1329I | aAc | aTc | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 7 | 7 | B.1.351.5 | 0.004197 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 7 | 7 | P.1.6 | 0.013619 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1329 | N1329del2 | aAC | a-- | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1329 | N1329del2 | AAc | --c | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | AY.105 | 0.003215 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | B.1.400 | 0.002145 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | B.1.470 | 0.007022 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | AY.5.3 | 0.00135 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | B.1.404 | 0.005208 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | B.1.465 | 0.015209 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1329 | N1329G | AAc | GGc | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329G | AAC | GGA | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 3 | 3 | AY.4.3 | 0.002525 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | AY.56 | 0.004815 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | B.1.173 | 0.078947 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 3 | 3 | B.1.177.16 | 0.001993 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | C.9 | 0.090909 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | P.1.16 | 0.001122 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | A.29 | 0.010638 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1329 | N1329H | Aac | Cac | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329X | AAC | TGA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329del1 | Aac | -ac | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329del1 | aaC | aa- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329X | AaC | TaA | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1329 | N1329T | aAc | aCc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.1.302 | 0.004149 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.160.9 | 0.014388 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1329 | N1329I | aAc | aTc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.258.7 | 0.003824 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.315 | 0.012121 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.550 | 0.027397 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 2 | 2 | B.1.554 | 0.008811 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 1329 | N1329I | aAc | aTc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 2 | 2 | Q.7 | 0.002222 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1329 | N1329H | Aac | Cac | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 1329 | N1329A | AAC | GCA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329Q | AaC | CaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329L | AAc | CTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1329 | N1329G | AAc | GGc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1329 | N1329T | aAc | aCc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1329 | N1329T | aAc | aCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1329 | N1329del2 | AAc | --c | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1329 | N1329I | aAc | aTc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1329 | N1329del2 | AAc | --c | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1329 | N1329del1 | aaC | aa- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1329 | N1329I | aAc | aTc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1329 | N1329Q | AaC | CaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1329 | N1329del1 | Aac | -ac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1329 | N1329H | Aac | Cac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.353 | 0.020833 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1329 | N1329del2 | aAC | a-- | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 1329 | N1329G | AAc | GGc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1329 | N1329I | aAc | aTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.72 | 0.030303 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.151 | 0.011111 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.177.27 | 0.009434 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1329 | N1329del2 | aAC | a-- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1329 | N1329T | aAc | aCc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1329 | N1329T | aAc | aCc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.499.1 | 0.111111 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1329 | N1329X | AAC | TGA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1329 | N1329del2 | aAC | a-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1329 | N1329A | AAC | GCA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1329 | N1329T | aAc | aCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1329 | N1329G | AAC | GGA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1329 | N1329L | AAc | CTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | C.29 | 0.0625 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1329 | N1329Y | Aac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1329 | N1329X | AaC | TaA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaG | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1329 | N1329N | aaC | aaT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1329 | N1329D | Aac | Gac | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1329 | N1329K | aaC | aaA | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1329 | N1329S | aAc | aGc | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1329 | N1329del | AAC | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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