CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1329

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31329N1329NN2147NsynaaCaaT212922129216704-6706
ORF1ab/nsp31329N1329DN2147DnonsynAacGac477647730.9993726704-6706
ORF1ab/nsp31329N1329DN2147DnonsynAaCGaT477630.0006281416704-6706
ORF1ab/nsp31329N1329SN2147SnonsynaAcaGc8778750.997726704-6706
ORF1ab/nsp31329N1329SN2147SnonsynaACaGT87710.001140256704-6706
ORF1ab/nsp31329N1329SN2147SnonsynAACTCA87710.001140256704-6706
ORF1ab/nsp31329N1329delN2147deldelAAC---21821816704-6706
ORF1ab/nsp31329N1329KN2147KnonsynaaCaaA97940.9690726704-6706
ORF1ab/nsp31329N1329KN2147KnonsynaaCaaG9730.03092786704-6706
ORF1ab/nsp31329N1329TN2147TnonsynaAcaCc818116704-6706
ORF1ab/nsp31329N1329YN2147YnonsynAacTac505016704-6706
ORF1ab/nsp31329N1329IN2147InonsynaAcaTc7716704-6706
ORF1ab/nsp31329N1329del2N2147del2delaACa--530.66704-6706
ORF1ab/nsp31329N1329del2N2147del2delAAc--c520.46704-6706
ORF1ab/nsp31329N1329GN2147GnonsynAAcGGc320.6666676704-6706
ORF1ab/nsp31329N1329GN2147GnonsynAACGGA310.3333336704-6706
ORF1ab/nsp31329N1329HN2147HnonsynAacCac2216704-6706
ORF1ab/nsp31329N1329XN2147XnonsynAaCTaA210.56704-6706
ORF1ab/nsp31329N1329del1N2147del1delAac-ac210.56704-6706
ORF1ab/nsp31329N1329del1N2147del1delaaCaa-210.56704-6706
ORF1ab/nsp31329N1329XN2147XnonsynAACTGA210.56704-6706
ORF1ab/nsp31329N1329QN2147QnonsynAaCCaA1116704-6706
ORF1ab/nsp31329N1329AN2147AnonsynAACGCA1116704-6706
ORF1ab/nsp31329N1329LN2147LnonsynAAcCTc1116704-6706

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31329N1329NaaCaaT2129221292All0.004072
ORF1ab/nsp31329N1329NaaCaaT1331913319B.1.1.70.011923
ORF1ab/nsp31329N1329DAacGac47734776All0.000913
ORF1ab/nsp31329N1329DAaCGaT34776All0.000001
ORF1ab/nsp31329N1329DAacGac19671968B.1.621.10.994942
ORF1ab/nsp31329N1329DAaCGaT11968B.1.621.10.000506
ORF1ab/nsp31329N1329NaaCaaT16301630AY.40.002537
ORF1ab/nsp31329N1329NaaCaaT14921492B.1.2320.80172
ORF1ab/nsp31329N1329DAacGac11401140P.1.17.10.997375
ORF1ab/nsp31329N1329DAacGac949949P.1.170.15351
ORF1ab/nsp31329N1329NaaCaaT883883AY.4.30.743266
ORF1ab/nsp31329N1329SaAcaGc875877All0.000167
ORF1ab/nsp31329N1329SaACaGT1877All0
ORF1ab/nsp31329N1329SAACTCA1877All0
ORF1ab/nsp31329N1329SaAcaGc577578B.1.20.005081
ORF1ab/nsp31329N1329SaACaGT1578B.1.20.000009
ORF1ab/nsp31329N1329NaaCaaT454454B.1.1770.005978
ORF1ab/nsp31329N1329DAacGac394396AY.90.026632
ORF1ab/nsp31329N1329DAaCGaT2396AY.90.000135
ORF1ab/nsp31329N1329NaaCaaT323323C.36.3.10.877717
ORF1ab/nsp31329N1329NaaCaaT262262AY.370.082807
ORF1ab/nsp31329N1329NaaCaaT245245B.1.617.20.000923
ORF1ab/nsp31329N1329delAAC---218218All0.000042
ORF1ab/nsp31329N1329NaaCaaT138138C.230.802326
ORF1ab/nsp31329N1329NaaCaaT134134AY.1030.000832
ORF1ab/nsp31329N1329NaaCaaT132132AY.30.001313
ORF1ab/nsp31329N1329NaaCaaT132132B.10.001209
ORF1ab/nsp31329N1329SaAcaGc129129AY.40.000201
ORF1ab/nsp31329N1329NaaCaaT125125AY.250.000752
ORF1ab/nsp31329N1329NaaCaaT116116Q.80.019129
ORF1ab/nsp31329N1329NaaCaaT101101B.1.20.000889
ORF1ab/nsp31329N1329delAAC---9898B.1.1.70.000088
ORF1ab/nsp31329N1329KaaCaaA9497All0.000018
ORF1ab/nsp31329N1329KaaCaaG397All0.000001
ORF1ab/nsp31329N1329NaaCaaT9494AY.440.000572
ORF1ab/nsp31329N1329DAacGac8282AY.40.000128
ORF1ab/nsp31329N1329TaAcaCc8181All0.000015
ORF1ab/nsp31329N1329NaaCaaT7474AY.430.000328
ORF1ab/nsp31329N1329TaAcaCc7474B.1.1.70.000066
ORF1ab/nsp31329N1329DAacGac7171B.1.6210.006285
ORF1ab/nsp31329N1329NaaCaaT6767B.1.4290.001576
ORF1ab/nsp31329N1329NaaCaaT6565B.1.10.001179
ORF1ab/nsp31329N1329NaaCaaT6060B.1.2430.004175
ORF1ab/nsp31329N1329NaaCaaT5959Q.10.007453
ORF1ab/nsp31329N1329NaaCaaT5858B.1.5750.017597
ORF1ab/nsp31329N1329NaaCaaT5353P.1.140.002533
ORF1ab/nsp31329N1329NaaCaaT5252B.1.36.290.026901
ORF1ab/nsp31329N1329NaaCaaT5151B.1.1.4340.017776
ORF1ab/nsp31329N1329YAacTac5050All0.00001
ORF1ab/nsp31329N1329NaaCaaT4949P.10.000772
ORF1ab/nsp31329N1329NaaCaaT4444B.1.5960.003834
ORF1ab/nsp31329N1329NaaCaaT4141AY.390.001013
ORF1ab/nsp31329N1329NaaCaaT3636R.10.00324
ORF1ab/nsp31329N1329DAacGac3434B.1.1.70.00003
ORF1ab/nsp31329N1329NaaCaaT3131C.370.003598
ORF1ab/nsp31329N1329NaaCaaT3030B.1.1600.000936
ORF1ab/nsp31329N1329NaaCaaT2828B.1.2820.41791
ORF1ab/nsp31329N1329NaaCaaT2626AY.740.003007
ORF1ab/nsp31329N1329DAacGac2626B.1.617.20.000098
ORF1ab/nsp31329N1329NaaCaaT2525AY.1020.000663
ORF1ab/nsp31329N1329NaaCaaT2525AY.850.010679
ORF1ab/nsp31329N1329NaaCaaT2525B.1.177.600.005461
ORF1ab/nsp31329N1329NaaCaaT2424AY.200.000933
ORF1ab/nsp31329N1329NaaCaaT2424B.1.177.440.012455
ORF1ab/nsp31329N1329SaAcaGc2323AY.250.000138
ORF1ab/nsp31329N1329DAacGac2222P.10.000347
ORF1ab/nsp31329N1329SaAcaGc2121B.1.1.70.000019
ORF1ab/nsp31329N1329KaaCaaA2020B.1.1.1570.018265
ORF1ab/nsp31329N1329NaaCaaT2020B.1.1.5190.000794
ORF1ab/nsp31329N1329NaaCaaT1919AY.50.000392
ORF1ab/nsp31329N1329NaaCaaT1818B.1.1.3170.00741
ORF1ab/nsp31329N1329NaaCaaT1717AY.420.000684
ORF1ab/nsp31329N1329DAacGac1717AY.440.000103
ORF1ab/nsp31329N1329NaaCaaT1717B.1.2580.001131
ORF1ab/nsp31329N1329YAacTac1717B.1.4290.0004
ORF1ab/nsp31329N1329NaaCaaT1616AY.1190.000565
ORF1ab/nsp31329N1329SaAcaGc1616AY.30.000159
ORF1ab/nsp31329N1329NaaCaaT1616B.1.5090.013853
ORF1ab/nsp31329N1329NaaCaaT1515B.1.3510.000446
ORF1ab/nsp31329N1329NaaCaaT1414AY.1180.000877
ORF1ab/nsp31329N1329delAAC---1414AY.40.000022
ORF1ab/nsp31329N1329DAacGac1414B.10.000128
ORF1ab/nsp31329N1329delAAC---1414B.1.1770.000184
ORF1ab/nsp31329N1329delAAC---1313AY.430.000058
ORF1ab/nsp31329N1329NaaCaaT1313AY.640.007738
ORF1ab/nsp31329N1329NaaCaaT1212AY.330.000801
ORF1ab/nsp31329N1329NaaCaaT1212AY.98.10.000581
ORF1ab/nsp31329N1329NaaCaaT1212B.1.5820.005888
ORF1ab/nsp31329N1329SaAcaGc1112B.1.617.20.000041
ORF1ab/nsp31329N1329SAACTCA112B.1.617.20.000004
ORF1ab/nsp31329N1329NaaCaaT1111B.1.4270.000555
ORF1ab/nsp31329N1329NaaCaaT1111B.1.5260.000259
ORF1ab/nsp31329N1329NaaCaaT1111B.1.5610.004367
ORF1ab/nsp31329N1329NaaCaaT1111B.1.5670.036667
ORF1ab/nsp31329N1329NaaCaaT1010AY.460.001041
ORF1ab/nsp31329N1329NaaCaaT1010AY.9.10.000837
ORF1ab/nsp31329N1329SaAcaGc1010B.10.000092
ORF1ab/nsp31329N1329NaaCaaT1010B.1.1.630.003858
ORF1ab/nsp31329N1329SaAcaGc99AY.1200.000335
ORF1ab/nsp31329N1329NaaCaaT99AY.1200.000335
ORF1ab/nsp31329N1329NaaCaaT99B.1.1.10.00294
ORF1ab/nsp31329N1329NaaCaaT99B.1.1.2140.000499
ORF1ab/nsp31329N1329NaaCaaT99B.1.1.500.00611
ORF1ab/nsp31329N1329NaaCaaT99B.1.177.350.00622
ORF1ab/nsp31329N1329DAacGac99B.1.2400.00194
ORF1ab/nsp31329N1329NaaCaaT99B.1.6210.000797
ORF1ab/nsp31329N1329NaaCaaT88AY.1000.000368
ORF1ab/nsp31329N1329NaaCaaT88B.1.5250.000905
ORF1ab/nsp31329N1329SaAcaGc88B.1.6320.053691
ORF1ab/nsp31329N1329IaAcaTc77All0.000001
ORF1ab/nsp31329N1329KaaCaaA77AY.200.000272
ORF1ab/nsp31329N1329NaaCaaT77AY.290.00011
ORF1ab/nsp31329N1329NaaCaaT77AY.450.000852
ORF1ab/nsp31329N1329NaaCaaT77AY.750.000392
ORF1ab/nsp31329N1329SaAcaGc77B.1.10.000127
ORF1ab/nsp31329N1329NaaCaaT77B.1.351.50.004197
ORF1ab/nsp31329N1329NaaCaaT77B.1.360.001021
ORF1ab/nsp31329N1329KaaCaaA77B.1.617.20.000026
ORF1ab/nsp31329N1329NaaCaaT77B.1.6370.000512
ORF1ab/nsp31329N1329NaaCaaT77P.1.60.013619
ORF1ab/nsp31329N1329NaaCaaT77P.20.001306
ORF1ab/nsp31329N1329NaaCaaT66AY.1130.000854
ORF1ab/nsp31329N1329NaaCaaT66AY.1170.000507
ORF1ab/nsp31329N1329NaaCaaT66AY.230.000418
ORF1ab/nsp31329N1329NaaCaaT66AY.270.000388
ORF1ab/nsp31329N1329YAacTac66AY.390.000148
ORF1ab/nsp31329N1329NaaCaaT66AY.39.10.000238
ORF1ab/nsp31329N1329NaaCaaT66AY.4.40.002455
ORF1ab/nsp31329N1329delAAC---66AY.4.50.000645
ORF1ab/nsp31329N1329SaAcaGc66B.1.3510.000178
ORF1ab/nsp31329N1329delAAC---66B.1.617.20.000023
ORF1ab/nsp31329N1329del2aACa--35All0.000001
ORF1ab/nsp31329N1329del2AAc--c25All0
ORF1ab/nsp31329N1329DAacGac55AY.1030.000031
ORF1ab/nsp31329N1329NaaCaaT55AY.1050.003215
ORF1ab/nsp31329N1329NaaCaaT55AY.130.000805
ORF1ab/nsp31329N1329NaaCaaT55AY.16.10.00235
ORF1ab/nsp31329N1329NaaCaaT55AY.340.000485
ORF1ab/nsp31329N1329SaAcaGc55AY.430.000022
ORF1ab/nsp31329N1329NaaCaaT55AY.5.40.001384
ORF1ab/nsp31329N1329NaaCaaT55AY.530.001438
ORF1ab/nsp31329N1329NaaCaaT55AY.610.000524
ORF1ab/nsp31329N1329NaaCaaT55B.1.1.3060.002192
ORF1ab/nsp31329N1329NaaCaaT55B.1.4000.002145
ORF1ab/nsp31329N1329NaaCaaT55B.1.4700.007022
ORF1ab/nsp31329N1329SaAcaGc55B.1.5960.000436
ORF1ab/nsp31329N1329SaAcaGc55B.1.617.10.000645
ORF1ab/nsp31329N1329NaaCaaT55B.1.617.10.000645
ORF1ab/nsp31329N1329SaAcaGc55P.10.000079
ORF1ab/nsp31329N1329KaaCaaA44AY.250.000024
ORF1ab/nsp31329N1329delAAC---44AY.250.000024
ORF1ab/nsp31329N1329KaaCaaA44AY.30.00004
ORF1ab/nsp31329N1329NaaCaaT44AY.3.10.000341
ORF1ab/nsp31329N1329KaaCaaA44AY.40.000006
ORF1ab/nsp31329N1329NaaCaaT44AY.4.20.000087
ORF1ab/nsp31329N1329NaaCaaT44AY.5.30.00135
ORF1ab/nsp31329N1329NaaCaaT44AY.540.000381
ORF1ab/nsp31329N1329NaaCaaT44AY.9.20.000147
ORF1ab/nsp31329N1329NaaCaaT44AY.980.000316
ORF1ab/nsp31329N1329delAAC---44B.10.000037
ORF1ab/nsp31329N1329DAacGac44B.1.10.000073
ORF1ab/nsp31329N1329NaaCaaT44B.1.1.2160.003562
ORF1ab/nsp31329N1329NaaCaaT44B.1.1.3180.001207
ORF1ab/nsp31329N1329NaaCaaT44B.1.1.3480.003185
ORF1ab/nsp31329N1329NaaCaaT44B.1.2340.000528
ORF1ab/nsp31329N1329NaaCaaT44B.1.4040.005208
ORF1ab/nsp31329N1329NaaCaaT44B.1.4650.015209
ORF1ab/nsp31329N1329NaaCaaT44B.1.5950.001044
ORF1ab/nsp31329N1329KaaCaaA44P.20.000747
ORF1ab/nsp31329N1329GAAcGGc23All0
ORF1ab/nsp31329N1329GAACGGA13All0
ORF1ab/nsp31329N1329NaaCaaT33AY.100.00159
ORF1ab/nsp31329N1329YAacTac33AY.40.000005
ORF1ab/nsp31329N1329KaaCaaA33AY.4.30.002525
ORF1ab/nsp31329N1329DAacGac33AY.430.000013
ORF1ab/nsp31329N1329NaaCaaT33AY.46.20.001906
ORF1ab/nsp31329N1329NaaCaaT33AY.560.004815
ORF1ab/nsp31329N1329NaaCaaT33AY.840.001312
ORF1ab/nsp31329N1329NaaCaaT33B0.000383
ORF1ab/nsp31329N1329KaaCaaA23B.10.000018
ORF1ab/nsp31329N1329KaaCaaG13B.10.000009
ORF1ab/nsp31329N1329delAAC---33B.1.10.000054
ORF1ab/nsp31329N1329YAacTac33B.1.1.5190.000119
ORF1ab/nsp31329N1329NaaCaaT33B.1.1.700.001023
ORF1ab/nsp31329N1329NaaCaaT33B.1.110.30.002155
ORF1ab/nsp31329N1329NaaCaaT33B.1.1730.078947
ORF1ab/nsp31329N1329delAAC---33B.1.177.160.001993
ORF1ab/nsp31329N1329delAAC---33B.1.177.40.000633
ORF1ab/nsp31329N1329KaaCaaA33B.1.20.000026
ORF1ab/nsp31329N1329SaAcaGc33B.1.214.20.001799
ORF1ab/nsp31329N1329NaaCaaT33B.1.2400.000647
ORF1ab/nsp31329N1329delAAC---33B.1.36.170.001482
ORF1ab/nsp31329N1329YAacTac33B.1.4970.000944
ORF1ab/nsp31329N1329NaaCaaT33B.60.00273
ORF1ab/nsp31329N1329NaaCaaT33C.36.30.001702
ORF1ab/nsp31329N1329DAacGac33C.370.000348
ORF1ab/nsp31329N1329NaaCaaT33C.90.090909
ORF1ab/nsp31329N1329KaaCaaA33P.10.000047
ORF1ab/nsp31329N1329NaaCaaT33P.1.160.001122
ORF1ab/nsp31329N1329NaaCaaT33P.1.170.000485
ORF1ab/nsp31329N1329NaaCaaT33P.1.20.003468
ORF1ab/nsp31329N1329NaaCaaT22A.10.000564
ORF1ab/nsp31329N1329NaaCaaT22A.290.010638
ORF1ab/nsp31329N1329NaaCaaT22AD.20.000438
ORF1ab/nsp31329N1329HAacCac22All0
ORF1ab/nsp31329N1329XAACTGA12All0
ORF1ab/nsp31329N1329del1Aac-ac12All0
ORF1ab/nsp31329N1329del1aaCaa-12All0
ORF1ab/nsp31329N1329XAaCTaA12All0
ORF1ab/nsp31329N1329KaaCaaA22AY.1030.000012
ORF1ab/nsp31329N1329NaaCaaT22AY.1060.00067
ORF1ab/nsp31329N1329NaaCaaT22AY.1210.000271
ORF1ab/nsp31329N1329NaaCaaT22AY.260.000057
ORF1ab/nsp31329N1329NaaCaaT22AY.29.10.000441
ORF1ab/nsp31329N1329SaAcaGc22AY.340.000194
ORF1ab/nsp31329N1329delAAC---22AY.390.000049
ORF1ab/nsp31329N1329NaaCaaT22AY.4.2.10.000298
ORF1ab/nsp31329N1329SaAcaGc22AY.420.00008
ORF1ab/nsp31329N1329KaaCaaA22AY.430.000009
ORF1ab/nsp31329N1329TaAcaCc22AY.440.000012
ORF1ab/nsp31329N1329KaaCaaA22AY.440.000012
ORF1ab/nsp31329N1329NaaCaaT22AY.46.30.001867
ORF1ab/nsp31329N1329NaaCaaT22AY.46.50.000397
ORF1ab/nsp31329N1329NaaCaaT22AY.46.60.000144
ORF1ab/nsp31329N1329delAAC---22AY.50.000041
ORF1ab/nsp31329N1329KaaCaaA22AY.7.20.001119
ORF1ab/nsp31329N1329NaaCaaT22AY.700.000417
ORF1ab/nsp31329N1329YAacTac22B.1.10.000036
ORF1ab/nsp31329N1329KaaCaaA22B.1.10.000036
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.1590.009346
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.1980.002937
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.2220.000408
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.250.001137
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.2770.001517
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.280.000622
ORF1ab/nsp31329N1329YAacTac22B.1.1.2910.001485
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.3020.004149
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.330.000842
ORF1ab/nsp31329N1329NaaCaaT22B.1.1.370.000386
ORF1ab/nsp31329N1329KaaCaaA22B.1.1.70.000002
ORF1ab/nsp31329N1329NaaCaaT22B.1.160.90.014388
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.100.001756
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.120.000303
ORF1ab/nsp31329N1329delAAC---22B.1.177.170.001642
ORF1ab/nsp31329N1329delAAC---22B.1.177.180.00232
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.420.001789
ORF1ab/nsp31329N1329delAAC---22B.1.177.560.001335
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.560.001335
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.730.001133
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.770.001452
ORF1ab/nsp31329N1329NaaCaaT22B.1.177.860.000367
ORF1ab/nsp31329N1329IaAcaTc22B.1.20.000018
ORF1ab/nsp31329N1329NaaCaaT22B.1.258.170.000208
ORF1ab/nsp31329N1329NaaCaaT22B.1.258.70.003824
ORF1ab/nsp31329N1329NaaCaaT22B.1.3150.012121
ORF1ab/nsp31329N1329SaAcaGc22B.1.351.30.001753
ORF1ab/nsp31329N1329delAAC---22B.1.360.000292
ORF1ab/nsp31329N1329NaaCaaT22B.1.36.100.009569
ORF1ab/nsp31329N1329SaAcaGc22B.1.3960.001411
ORF1ab/nsp31329N1329NaaCaaT22B.1.5500.027397
ORF1ab/nsp31329N1329KaaCaaA22B.1.5540.008811
ORF1ab/nsp31329N1329NaaCaaT22B.1.5760.001813
ORF1ab/nsp31329N1329NaaCaaT22B.1.5770.001375
ORF1ab/nsp31329N1329IaAcaTc22B.1.617.20.000008
ORF1ab/nsp31329N1329SaAcaGc22B.1.6210.000177
ORF1ab/nsp31329N1329DAacGac22B.1.6230.001073
ORF1ab/nsp31329N1329NaaCaaT22D.20.00015
ORF1ab/nsp31329N1329NaaCaaT22N.90.011905
ORF1ab/nsp31329N1329NaaCaaT22P.1.120.000968
ORF1ab/nsp31329N1329DAacGac22P.1.120.000968
ORF1ab/nsp31329N1329NaaCaaT22P.1.150.000465
ORF1ab/nsp31329N1329DAacGac22P.20.000373
ORF1ab/nsp31329N1329NaaCaaT22Q.70.002222
ORF1ab/nsp31329N1329NaaCaaT110.055556
ORF1ab/nsp31329N1329HAacCac11A0.000387
ORF1ab/nsp31329N1329delAAC---11A.210.00277
ORF1ab/nsp31329N1329AAACGCA11All0
ORF1ab/nsp31329N1329QAaCCaA11All0
ORF1ab/nsp31329N1329LAAcCTc11All0
ORF1ab/nsp31329N1329NaaCaaT11AY.10.000396
ORF1ab/nsp31329N1329SaAcaGc11AY.1020.000027
ORF1ab/nsp31329N1329KaaCaaA11AY.1020.000027
ORF1ab/nsp31329N1329SaAcaGc11AY.1030.000006
ORF1ab/nsp31329N1329NaaCaaT11AY.1070.000466
ORF1ab/nsp31329N1329NaaCaaT11AY.1080.001103
ORF1ab/nsp31329N1329DAacGac11AY.1080.001103
ORF1ab/nsp31329N1329SaAcaGc11AY.1080.001103
ORF1ab/nsp31329N1329SaAcaGc11AY.1130.000142
ORF1ab/nsp31329N1329GAAcGGc11AY.1130.000142
ORF1ab/nsp31329N1329SaAcaGc11AY.1160.000287
ORF1ab/nsp31329N1329NaaCaaT11AY.1160.000287
ORF1ab/nsp31329N1329NaaCaaT11AY.116.10.000311
ORF1ab/nsp31329N1329YAacTac11AY.1190.000035
ORF1ab/nsp31329N1329KaaCaaA11AY.120.000316
ORF1ab/nsp31329N1329KaaCaaA11AY.1200.000037
ORF1ab/nsp31329N1329DAacGac11AY.130.000161
ORF1ab/nsp31329N1329NaaCaaT11AY.150.002222
ORF1ab/nsp31329N1329NaaCaaT11AY.160.00038
ORF1ab/nsp31329N1329SaAcaGc11AY.16.10.00047
ORF1ab/nsp31329N1329delAAC---11AY.190.00114
ORF1ab/nsp31329N1329TaAcaCc11AY.230.00007
ORF1ab/nsp31329N1329NaaCaaT11AY.23.10.000417
ORF1ab/nsp31329N1329YAacTac11AY.250.000006
ORF1ab/nsp31329N1329DAacGac11AY.250.000006
ORF1ab/nsp31329N1329NaaCaaT11AY.280.00189
ORF1ab/nsp31329N1329SaAcaGc11AY.290.000016
ORF1ab/nsp31329N1329delAAC---11AY.30.00001
ORF1ab/nsp31329N1329DAacGac11AY.3.10.000085
ORF1ab/nsp31329N1329KaaCaaG11AY.330.000067
ORF1ab/nsp31329N1329DAacGac11AY.34.10.00051
ORF1ab/nsp31329N1329NaaCaaT11AY.350.000233
ORF1ab/nsp31329N1329delAAC---11AY.360.000148
ORF1ab/nsp31329N1329SaAcaGc11AY.380.000499
ORF1ab/nsp31329N1329TaAcaCc11AY.40.000002
ORF1ab/nsp31329N1329KaaCaaA11AY.4.20.000022
ORF1ab/nsp31329N1329KaaCaaA11AY.4.2.10.000149
ORF1ab/nsp31329N1329NaaCaaT11AY.4.50.000107
ORF1ab/nsp31329N1329KaaCaaA11AY.420.00004
ORF1ab/nsp31329N1329YAacTac11AY.440.000006
ORF1ab/nsp31329N1329SaAcaGc11AY.440.000006
ORF1ab/nsp31329N1329delAAC---11AY.440.000006
ORF1ab/nsp31329N1329SaAcaGc11AY.460.000104
ORF1ab/nsp31329N1329delAAC---11AY.46.20.000635
ORF1ab/nsp31329N1329NaaCaaT11AY.46.40.000165
ORF1ab/nsp31329N1329DAacGac11AY.470.000031
ORF1ab/nsp31329N1329NaaCaaT11AY.470.000031
ORF1ab/nsp31329N1329YAacTac11AY.480.000465
ORF1ab/nsp31329N1329DAacGac11AY.50.000021
ORF1ab/nsp31329N1329SaAcaGc11AY.50.000021
ORF1ab/nsp31329N1329NaaCaaT11AY.500.000799
ORF1ab/nsp31329N1329NaaCaaT11AY.580.000907
ORF1ab/nsp31329N1329NaaCaaT11AY.590.00053
ORF1ab/nsp31329N1329NaaCaaT11AY.60.000041
ORF1ab/nsp31329N1329delAAC---11AY.60.000041
ORF1ab/nsp31329N1329delAAC---11AY.600.000938
ORF1ab/nsp31329N1329KaaCaaA11AY.610.000105
ORF1ab/nsp31329N1329DAacGac11AY.680.000274
ORF1ab/nsp31329N1329NaaCaaT11AY.690.000187
ORF1ab/nsp31329N1329delAAC---11AY.70.000196
ORF1ab/nsp31329N1329NaaCaaT11AY.7.20.000559
ORF1ab/nsp31329N1329DAacGac11AY.710.000475
ORF1ab/nsp31329N1329delAAC---11AY.720.001361
ORF1ab/nsp31329N1329delAAC---11AY.750.000056
ORF1ab/nsp31329N1329DAacGac11AY.75.10.00018
ORF1ab/nsp31329N1329NaaCaaT11AY.75.10.00018
ORF1ab/nsp31329N1329NaaCaaT11AY.810.001992
ORF1ab/nsp31329N1329del2AAc--c11AY.840.000437
ORF1ab/nsp31329N1329NaaCaaT11AY.870.000833
ORF1ab/nsp31329N1329NaaCaaT11AY.890.004902
ORF1ab/nsp31329N1329delAAC---11AY.90.000068
ORF1ab/nsp31329N1329KaaCaaA11AY.9.20.000037
ORF1ab/nsp31329N1329IaAcaTc11AY.9.20.000037
ORF1ab/nsp31329N1329YAacTac11AY.910.00073
ORF1ab/nsp31329N1329NaaCaaT11AY.920.000287
ORF1ab/nsp31329N1329DAacGac11AY.98.10.000048
ORF1ab/nsp31329N1329delAAC---11AY.98.10.000048
ORF1ab/nsp31329N1329del2AAc--c11AY.990.001049
ORF1ab/nsp31329N1329delAAC---11AY.99.10.001553
ORF1ab/nsp31329N1329NaaCaaT11AY.99.20.000092
ORF1ab/nsp31329N1329DAacGac11B0.000128
ORF1ab/nsp31329N1329YAacTac11B0.000128
ORF1ab/nsp31329N1329del1aaCaa-11B.10.000009
ORF1ab/nsp31329N1329YAacTac11B.10.000009
ORF1ab/nsp31329N1329IaAcaTc11B.1.10.000018
ORF1ab/nsp31329N1329QAaCCaA11B.1.10.000018
ORF1ab/nsp31329N1329del1Aac-ac11B.1.10.000018
ORF1ab/nsp31329N1329HAacCac11B.1.10.000018
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.150.013514
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.1530.001095
ORF1ab/nsp31329N1329KaaCaaA11B.1.1.2160.00089
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2170.003636
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2200.001859
ORF1ab/nsp31329N1329SaAcaGc11B.1.1.2220.000204
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2370.005405
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2790.001121
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2820.011628
ORF1ab/nsp31329N1329DAacGac11B.1.1.2840.000107
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2840.000107
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.2940.001266
ORF1ab/nsp31329N1329YAacTac11B.1.1.2980.000862
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3030.002762
ORF1ab/nsp31329N1329delAAC---11B.1.1.3110.000358
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3110.000358
ORF1ab/nsp31329N1329delAAC---11B.1.1.3120.001912
ORF1ab/nsp31329N1329delAAC---11B.1.1.3480.000796
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3530.020833
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3560.008547
ORF1ab/nsp31329N1329SaAcaGc11B.1.1.370.000193
ORF1ab/nsp31329N1329delAAC---11B.1.1.370.000193
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.3720.000689
ORF1ab/nsp31329N1329DAacGac11B.1.1.390.00051
ORF1ab/nsp31329N1329delAAC---11B.1.1.4090.002833
ORF1ab/nsp31329N1329del2aACa--11B.1.1.4340.000349
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.440.00241
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.4400.011765
ORF1ab/nsp31329N1329SaAcaGc11B.1.1.4480.002033
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.4640.001473
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.470.005348
ORF1ab/nsp31329N1329SaAcaGc11B.1.1.5190.00004
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.5210.005348
ORF1ab/nsp31329N1329GAAcGGc11B.1.1.70.000001
ORF1ab/nsp31329N1329YAacTac11B.1.1.70.000001
ORF1ab/nsp31329N1329IaAcaTc11B.1.1.70.000001
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.720.030303
ORF1ab/nsp31329N1329NaaCaaT11B.1.1.890.006061
ORF1ab/nsp31329N1329DAacGac11B.1.1110.001175
ORF1ab/nsp31329N1329DAacGac11B.1.1510.011111
ORF1ab/nsp31329N1329NaaCaaT11B.1.1570.002985
ORF1ab/nsp31329N1329delAAC---11B.1.1600.000031
ORF1ab/nsp31329N1329NaaCaaT11B.1.160.160.000929
ORF1ab/nsp31329N1329NaaCaaT11B.1.160.230.004831
ORF1ab/nsp31329N1329delAAC---11B.1.177.150.000631
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.170.000821
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.270.009434
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.330.001645
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.40.000211
ORF1ab/nsp31329N1329DAacGac11B.1.177.430.001477
ORF1ab/nsp31329N1329delAAC---11B.1.177.580.001332
ORF1ab/nsp31329N1329delAAC---11B.1.177.60.000977
ORF1ab/nsp31329N1329DAacGac11B.1.177.60.000977
ORF1ab/nsp31329N1329YAacTac11B.1.177.600.000218
ORF1ab/nsp31329N1329delAAC---11B.1.177.690.001484
ORF1ab/nsp31329N1329delAAC---11B.1.177.70.000165
ORF1ab/nsp31329N1329KaaCaaA11B.1.177.70.000165
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.70.000165
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.80.000752
ORF1ab/nsp31329N1329delAAC---11B.1.177.810.000189
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.810.000189
ORF1ab/nsp31329N1329SaAcaGc11B.1.177.810.000189
ORF1ab/nsp31329N1329NaaCaaT11B.1.177.820.000477
ORF1ab/nsp31329N1329delAAC---11B.1.177.870.000728
ORF1ab/nsp31329N1329del2aACa--11B.1.20.000009
ORF1ab/nsp31329N1329NaaCaaT11B.1.2060.000816
ORF1ab/nsp31329N1329delAAC---11B.1.2100.002132
ORF1ab/nsp31329N1329SaAcaGc11B.1.2100.002132
ORF1ab/nsp31329N1329NaaCaaT11B.1.2140.003663
ORF1ab/nsp31329N1329NaaCaaT11B.1.2210.000071
ORF1ab/nsp31329N1329KaaCaaA11B.1.2210.000071
ORF1ab/nsp31329N1329KaaCaaA11B.1.2320.000537
ORF1ab/nsp31329N1329NaaCaaT11B.1.2410.000812
ORF1ab/nsp31329N1329DAacGac11B.1.2430.00007
ORF1ab/nsp31329N1329NaaCaaT11B.1.2470.014925
ORF1ab/nsp31329N1329SaAcaGc11B.1.2580.000067
ORF1ab/nsp31329N1329delAAC---11B.1.258.100.011364
ORF1ab/nsp31329N1329NaaCaaT11B.1.3110.000275
ORF1ab/nsp31329N1329DAacGac11B.1.3490.000715
ORF1ab/nsp31329N1329KaaCaaA11B.1.360.000146
ORF1ab/nsp31329N1329TaAcaCc11B.1.36.170.000494
ORF1ab/nsp31329N1329NaaCaaT11B.1.36.180.00042
ORF1ab/nsp31329N1329NaaCaaT11B.1.36.350.002604
ORF1ab/nsp31329N1329SaAcaGc11B.1.36.380.001642
ORF1ab/nsp31329N1329NaaCaaT11B.1.3610.001289
ORF1ab/nsp31329N1329NaaCaaT11B.1.3690.000285
ORF1ab/nsp31329N1329YAacTac11B.1.3690.000285
ORF1ab/nsp31329N1329DAacGac11B.1.3950.007042
ORF1ab/nsp31329N1329NaaCaaT11B.1.3960.000706
ORF1ab/nsp31329N1329NaaCaaT11B.1.4260.001009
ORF1ab/nsp31329N1329DAacGac11B.1.4270.00005
ORF1ab/nsp31329N1329TaAcaCc11B.1.4290.000024
ORF1ab/nsp31329N1329NaaCaaT11B.1.438.10.000107
ORF1ab/nsp31329N1329NaaCaaT11B.1.466.20.000391
ORF1ab/nsp31329N1329NaaCaaT11B.1.4680.005714
ORF1ab/nsp31329N1329NaaCaaT11B.1.4970.000315
ORF1ab/nsp31329N1329NaaCaaT11B.1.499.10.111111
ORF1ab/nsp31329N1329NaaCaaT11B.1.5240.001406
ORF1ab/nsp31329N1329DAacGac11B.1.5260.000024
ORF1ab/nsp31329N1329KaaCaaA11B.1.5260.000024
ORF1ab/nsp31329N1329NaaCaaT11B.1.564.10.001577
ORF1ab/nsp31329N1329KaaCaaA11B.1.5820.000491
ORF1ab/nsp31329N1329DAacGac11B.1.5900.004545
ORF1ab/nsp31329N1329NaaCaaT11B.1.5900.004545
ORF1ab/nsp31329N1329SaAcaGc11B.1.5950.000261
ORF1ab/nsp31329N1329YAacTac11B.1.5960.000087
ORF1ab/nsp31329N1329NaaCaaT11B.1.5990.00365
ORF1ab/nsp31329N1329NaaCaaT11B.1.6000.005848
ORF1ab/nsp31329N1329NaaCaaT11B.1.6050.005952
ORF1ab/nsp31329N1329NaaCaaT11B.1.6090.000479
ORF1ab/nsp31329N1329XAACTGA11B.1.617.20.000004
ORF1ab/nsp31329N1329del2aACa--11B.1.617.20.000004
ORF1ab/nsp31329N1329AAACGCA11B.1.617.20.000004
ORF1ab/nsp31329N1329TaAcaCc11B.1.617.20.000004
ORF1ab/nsp31329N1329GAACGGA11B.1.617.20.000004
ORF1ab/nsp31329N1329LAAcCTc11B.1.617.20.000004
ORF1ab/nsp31329N1329NaaCaaT11B.1.619.10.000641
ORF1ab/nsp31329N1329NaaCaaT11B.1.6200.000946
ORF1ab/nsp31329N1329delAAC---11B.1.6210.000089
ORF1ab/nsp31329N1329NaaCaaT11B.1.6230.000536
ORF1ab/nsp31329N1329delAAC---11B.1.6300.005236
ORF1ab/nsp31329N1329NaaCaaT11B.1.80.001972
ORF1ab/nsp31329N1329NaaCaaT11B.370.028571
ORF1ab/nsp31329N1329NaaCaaT11B.400.000364
ORF1ab/nsp31329N1329NaaCaaT11C.290.0625
ORF1ab/nsp31329N1329NaaCaaT11C.300.001727
ORF1ab/nsp31329N1329delAAC---11C.350.000774
ORF1ab/nsp31329N1329SaAcaGc11C.370.000116
ORF1ab/nsp31329N1329YAacTac11C.370.000116
ORF1ab/nsp31329N1329NaaCaaT11C.390.018868
ORF1ab/nsp31329N1329KaaCaaA11D.20.000075
ORF1ab/nsp31329N1329YAacTac11D.20.000075
ORF1ab/nsp31329N1329XAaCTaA11D.20.000075
ORF1ab/nsp31329N1329KaaCaaA11N.50.001767
ORF1ab/nsp31329N1329NaaCaaT11N.60.007092
ORF1ab/nsp31329N1329KaaCaaG11N.60.007092
ORF1ab/nsp31329N1329delAAC---11P.10.000016
ORF1ab/nsp31329N1329NaaCaaT11P.1.10.000318
ORF1ab/nsp31329N1329DAacGac11P.1.10.000318
ORF1ab/nsp31329N1329SaAcaGc11P.1.10.000318
ORF1ab/nsp31329N1329delAAC---11P.1.150.000232
ORF1ab/nsp31329N1329KaaCaaA11P.1.160.000374
ORF1ab/nsp31329N1329DAacGac11P.1.20.001156
ORF1ab/nsp31329N1329NaaCaaT11P.1.90.004808
ORF1ab/nsp31329N1329SaAcaGc11P.20.000187
ORF1ab/nsp31329N1329SaAcaGc11Q.10.000126
ORF1ab/nsp31329N1329DAacGac11Q.10.000126
ORF1ab/nsp31329N1329KaaCaaA11Q.40.000455
ORF1ab/nsp31329N1329SaAcaGc11R.10.00009
ORF1ab/nsp31329N1329delAAC---11U.30.003861